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82 results on '"Bioglio, Livio"'

1. Modelling Biological and Ecological Systems with the Calculus of Wrapped Compartments

Author

Aldinucci, Marco, Bioglio, Livio, Calcagno, Cristina, Coppo, Mario, Damiani, Ferruccio, Drocco, Maurizio, Grassi, Elena, Ramón, Pablo, Sciacca, Eva, Spinella, Salvatore, and Troina, Angelo

Subjects
Quantitative Biology - Quantitative Methods, Computer Science - Formal Languages and Automata Theory
Abstract

The modelling and analysis of biological systems has deep roots in Mathematics, specifically in the field of Ordinary Differential Equations. Alternative approaches based on formal calculi, often derived from process algebras or term rewriting systems, provide a quite complementary way to analyse the behaviour of biological systems. These calculi allow to cope in a natural way with notions like compartments and membranes, which are not easy (sometimes impossible) to handle with purely numerical approaches, and are often based on stochastic simulation methods. The Calculus of Wrapped Compartments is a framework based on stochastic multiset rewriting in a compartmentalised setting used for the description of biological and ecological systems. We provide an extended presentation of the Calculus of Wrapped Compartments, sketch a few modelling guidelines to encode biological and ecological interactions, show how spatial properties can be handled within the framework and define a hybrid simulation algorithm. Several applications in Biology and Ecology are proposed as modelling case studies., Comment: arXiv admin note: text overlap with arXiv:1505.01985

Published
2022

3. Towards Content Sensitivity Analysis

Author

Battaglia, Elena, Bioglio, Livio, Pensa, Ruggero G., Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Berthold, Michael R., editor, Feelders, Ad, editor, and Krempl, Georg, editor

Published
2020
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4. A Social Network Simulation Game to Raise Awareness of Privacy among School Children

Author

Bioglio, Livio, Capecchi, Sara, Peiretti, Federico, Sayed, Dennis, Torasso, Antonella, and Pensa, Ruggero G.

Abstract

In this paper, we address the problem of enhancing young people's awareness of the mechanisms involving privacy in online social networks by presenting an innovative approach based on gamification. In particular, we propose a web application that allows kids and teenagers to experience the typical dynamics of information spread through a realistic interactive simulation. Under the supervision of the teacher, the students are inserted in a small artificial social graph, and through the different stages of game, they can post sentences with different levels of sensitivity, and "like" or share messages published by friends. At the end of game session, the application calculate multiple behavioral scores that can be used by the teacher to raise the curiosity of the students and stimulate discussions. Moreover, a complete interactive report is generated to analyze every individual action of the terminated game sessions. Our educational tool has been employed within an extensive experimental study involving more than 450 kids and 22 teachers in seven Italian primary school institutes. The results show that our approach is stimulating and supports teachers in helping kids discover and recognize potential privacy risks in social network activities.

Published
2019
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7. A Calculus of Looping Sequences with Local Rules

Author

Bioglio, Livio, Dezani-Ciancaglini, Mariangiola, Giannini, Paola, and Troina, Angelo

Subjects
Computer Science - Computational Engineering, Finance, and Science, Computer Science - Formal Languages and Automata Theory, F.4.2, F.4.3
Abstract

In this paper we present a variant of the Calculus of Looping Sequences (CLS for short) with global and local rewrite rules. While global rules, as in CLS, are applied anywhere in a given term, local rules can only be applied in the compartment on which they are defined. Local rules are dynamic: they can be added, moved and erased. We enrich the new calculus with a parallel semantics where a reduction step is lead by any number of global and local rules that could be performed in parallel. A type system is developed to enforce the property that a compartment must contain only local rules with specific features. As a running example we model some interactions happening in a cell starting from its nucleus and moving towards its mitochondria., Comment: In Proceedings DCM 2011, arXiv:1207.6821

Published
2012
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8. A Minimal OO Calculus for Modelling Biological Systems

Author

Bioglio, Livio

Subjects
Computer Science - Computational Engineering, Finance, and Science, Computer Science - Logic in Computer Science
Abstract

In this paper we present a minimal object oriented core calculus for modelling the biological notion of type that arises from biological ontologies in formalisms based on term rewriting. This calculus implements encapsulation, method invocation, subtyping and a simple formof overriding inheritance, and it is applicable to models designed in the most popular term-rewriting formalisms. The classes implemented in a formalism can be used in several models, like programming libraries., Comment: In Proceedings CompMod 2011, arXiv:1109.1044

Published
2011
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9. A Spatial Calculus of Wrapped Compartments

Author

Bioglio, Livio, Calcagno, Cristina, Coppo, Mario, Damiani, Ferruccio, Sciacca, Eva, Spinella, Salvatore, and Troina, Angelo

Subjects
Computer Science - Logic in Computer Science, Computer Science - Computational Engineering, Finance, and Science, Computer Science - Emerging Technologies, Quantitative Biology - Quantitative Methods
Abstract

The Calculus of Wrapped Compartments (CWC) is a recently proposed modelling language for the representation and simulation of biological systems behaviour. Although CWC has no explicit structure modelling a spatial geometry, its compartment labelling feature can be exploited to model various examples of spatial interactions in a natural way. However, specifying large networks of compartments may require a long modelling phase. In this work we present a surface language for CWC that provides basic constructs for modelling spatial interactions. These constructs can be compiled away to obtain a standard CWC model, thus exploiting the existing CWC simulation tool. A case study concerning the modelling of Arbuscular Mychorrizal fungi growth is discussed., Comment: Presented at MeCBIC 2011

Published
2011

11. Your Privacy, My Privacy? On Leakage Risk Assessment in Online Social Networks

Author

Pensa, Ruggero Gaetano, Bioglio, Livio, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Guidotti, Riccardo, editor, Monreale, Anna, editor, Pedreschi, Dino, editor, and Abiteboul, Serge, editor

Published
2017
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12. TrAnET: Tracking and Analyzing the Evolution of Topics in Information Networks

Author

Bioglio, Livio, Pensa, Ruggero G., Rho, Valentina, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Altun, Yasemin, editor, Das, Kamalika, editor, Mielikäinen, Taneli, editor, Malerba, Donato, editor, Stefanowski, Jerzy, editor, Read, Jesse, editor, Žitnik, Marinka, editor, Ceci, Michelangelo, editor, and Džeroski, Sašo, editor

Published
2017
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13. Measuring the Inspiration Rate of Topics in Bibliographic Networks

Author

Bioglio, Livio, Rho, Valentina, Pensa, Ruggero G., Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Yamamoto, Akihiro, editor, Kida, Takuya, editor, Uno, Takeaki, editor, and Kuboyama, Tetsuji, editor

Published
2017
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15. Three Is the Charm: A New Architecture, New Features and New Projects in EVT 3

Author

Bioglio, Livio, Cerretini, Giacomo, D'Agostino, Giulia, Magnanti, Elisabetta, Rosselli Del Turco, Roberto, Scholger, Walter, Vogeler, Georg, Tasovac, Toma, Baillot, Anne, Raunig, Elisabeth, Scholger, Martina, Steiner, Elisabeth, Centre for Information Modelling, and Helling, Patrick

Subjects
Paper, and methods, analysis, analysis and methods, scholarly editing and editions development, Computer science, digital scholarly editions, software development, systems, text encoding and markup language creation, deployment, Philology, information retrieval, Interface design, Poster, and analysis, development, EVT, data modeling
Abstract

In this poster we would like to present the new architecture and features of EVT 3 (Edition Visualization Technology), an open source Angular-based tool for the visualization of TEI-XML Digital Scholarly Editions. We will use and showcase two digital philology projects as test bed for the new functionalities.

Published
2023
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25. Anatomy of digital contact tracing: Role of age, transmission setting, adoption and case detection

Author

Arregui García, Beatriz, Moreno López, Jesús A., Bentkowski, Piotr, Bioglio, Livio, Pinotti, Francesco, Boëlle, Pierre-Yves, Barrat, Alain, Colizza, Vittoria, Poletto, Chiara, Arregui García, Beatriz, Moreno López, Jesús A., Bentkowski, Piotr, Bioglio, Livio, Pinotti, Francesco, Boëlle, Pierre-Yves, Barrat, Alain, Colizza, Vittoria, and Poletto, Chiara

Abstract

The efficacy of digital contact tracing against coronavirus disease 2019 (COVID-19) epidemic is debated: Smartphone penetration is limited in many countries, with low coverage among the elderly, the most vulnerable to COVID-19. We developed an agent-based model to precise the impact of digital contact tracing and household isolation on COVID-19 transmission [1]. The model, calibrated on French population, integrates demographic, contact and epidemiological information to describe exposure and transmission of COVID- 19. We explored realistic levels of case detection, app adoption, population immunity, and transmissibility. Assuming a reproductive ratio R = 2.6 and 50% detection of clinical cases, a ~20% app adoption reduces peak incidence by ~35%. With R = 1.7, >30% app adoption lowers the epidemic to manageable levels. Higher coverage among adults, playing a central role in COVID-19 transmission, yields an indirect benefit for the elderly. These results may inform the inclusion of digital contact tracing within a response plan against COVID-19 and future emerging disease epidemics.

Published
2021

26. Anatomy of digital contact tracing: Role of age, transmission setting, adoption, and case detection

Author

Agence Nationale de la Recherche (France), European Commission, Fondation de France, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Moreno López, Jesús A., Arregui García, Beatriz, Bentkowski, Piotr, Bioglio, Livio, Pinotti, Francesco, Boëlle, Pierre-Yves, Barrat, Alain, Colizza, Vittoria, Poletto, Chiara, Agence Nationale de la Recherche (France), European Commission, Fondation de France, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Moreno López, Jesús A., Arregui García, Beatriz, Bentkowski, Piotr, Bioglio, Livio, Pinotti, Francesco, Boëlle, Pierre-Yves, Barrat, Alain, Colizza, Vittoria, and Poletto, Chiara

Abstract

The efficacy of digital contact tracing against coronavirus disease 2019 (COVID-19) epidemic is debated: Smartphone penetration is limited in many countries, with low coverage among the elderly, the most vulnerable to COVID-19. We developed an agent-based model to precise the impact of digital contact tracing and household isolation on COVID-19 transmission. The model, calibrated on French population, integrates demographic, contact and epidemiological information to describe exposure and transmission of COVID-19. We explored realistic levels of case detection, app adoption, population immunity, and transmissibility. Assuming a reproductive ratio R = 2.6 and 50% detection of clinical cases, a ~20% app adoption reduces peak incidence by ~35%. With R = 1.7, >30% app adoption lowers the epidemic to manageable levels. Higher coverage among adults, playing a central role in COVID-19 transmission, yields an indirect benefit for the elderly. These results may inform the inclusion of digital contact tracing within a COVID-19 response plan.

Published
2021

38. Type Directed Semantics for the Calculus of Looping Sequences.

Author

Bioglio, Livio, Dezani-Ciancaglini, Mariangiola, Giannini, Paola, and Troina, Angelo

Subjects
SYSTEMS biology, SEMANTICS, CALCULUS, MATHEMATICAL analysis, MATHEMATICAL functions, COMPUTATIONAL biology
Abstract

The calculus of looping sequences is a formalism for describing the evolution of biological systems by means of term rewriting rules. Here we enrich this calculus with a type discipline which preserves some biological properties deriving from the requirement of certain elements, and the repellency of others. In particular, the type system guarantees the soundness of the application of reduction rules with respect to the elements which are required (all requirements must be satisfied) and to the elements which are excluded (two elements which repel each other cannot occur in the same compartment). As an example, we model the possible interactions (and compatibility) of different blood types with different antigens. The type system does not allow transfusion with incompatible blood types. [ABSTRACT FROM AUTHOR]

Published
2013

41. Exploring Students Eating Habits Through Individual Profiling and Clustering Analysis

Author

Natilli, Michela, Monreale, Anna, Guidotti, Riccardo, Pappalardo, Luca, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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42. A Differential Privacy Workflow for Inference of Parameters in the Rasch Model

Author

Steiner, Teresa Anna, Nyrnberg, David Enslev, Hansen, Lars Kai, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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43. Deep Factor Model : Explaining Deep Learning Decisions for Forecasting Stock Returns with Layer-Wise Relevance Propagation

Author

Nakagawa, Kei, Uchida, Takumi, Aoshima, Tomohisa, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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44. A Web Crawling Environment to Support Financial Strategies and Trend Correlation : – Extended Abstract –

Author

Ponti, Giovanni, Santomauro, Giuseppe, Ambrosino, Fiorenzo, Bracco, Giovanni, Colavincenzo, Antonio, De Rosa, Matteo, Funel, Agostino, Giammattei, Dante, Guarnieri, Guido, Migliori, Silvio, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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45. Privacy Risk for Individual Basket Patterns

Author

Pellungrini, Roberto, Monreale, Anna, Guidotti, Riccardo, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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46. Testing for Self-excitation in Financial Events: A Bayesian Approach

Author

Türkmen, Ali Caner, Cemgil, Ali Taylan, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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47. ICIE 1.0: A Novel Tool for Interactive Contextual Interaction Explanations

Author

van der Zon, Simon B., Duivesteijn, Wouter, van Ipenburg, Werner, Veldsink, Jan, Pechenizkiy, Mykola, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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48. Privacy Preserving Client/Vertical-Servers Classification

Author

Boer, Derian, Ahmadi, Zahra, Kramer, Stefan, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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49. A Comparison of Neural Network Methods for Accurate Sentiment Analysis of Stock Market Tweets

Author

Tabari, Narges, Seyeditabari, Armin, Peddi, Tanya, Hadzikadic, Mirsad, Zadrozny, Wlodek, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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50. A Multivariate and Multi-step Ahead Machine Learning Approach to Traditional and Cryptocurrencies Volatility Forecasting

Author

De Stefani, Jacopo, Caelen, Olivier, Hattab, Dalila, Le Borgne, Yann-Aël, Bontempi, Gianluca, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Alzate, Carlos, editor, Monreale, Anna, editor, Bioglio, Livio, editor, Bitetta, Valerio, editor, Bordino, Ilaria, editor, Caldarelli, Guido, editor, Ferretti, Andrea, editor, Guidotti, Riccardo, editor, Gullo, Francesco, editor, Pascolutti, Stefano, editor, Pensa, Ruggero G., editor, Robardet, Celine, editor, and Squartini, Tiziano, editor

Published
2019
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