77 results on '"Boštjančič E"'
Search Results
2. MicroRNAs, miR-1, miR-133a/b and miR-208 in infarcted and remote myocardium of human myocardial infarction with the focus on the ventricular fibrilation and/or tachycardia: P13-74
- Author
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Boštjančič, E., Zidar, N., Štajer, D., and Glavac, D.
- Published
- 2012
3. Explicit and Implicit Trust Criteria in Business Partnerships
- Author
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Ismagilova, F., Boštjančič, E., Ismagilova, F., and Boštjančič, E.
- Abstract
Identifying and understanding the similarities and differences between subjective trust criteria in Russian and European business can help offer scientific recommendations for the development of long-term international business cooperation, based on mutual trust, despite the differences between both cultures. The purpose of this study is to describe the relations between the implicit and explicit trust criteria presented in Russian and European studies, and to compare how these criteria are expressed in Russian and European publications from a quantitative perspective. Using the content analysis of European and Russian publications for the period 2005–2015, the following main research questions are considered: (1) Are more references made to explicit trust criteria than implicit trust criteria? (2) Are the explicit criteria focused on a partner’s business mentioned more often than the explicit criteria focused on a partner’s competences and personality? (3) Are more references made to implicit trust criteria in Russian or European scientific articles? As the results reveal, although implicit criteria do not dominate in the subjective trust criteria for business partnerships, they nevertheless have a significant presence. Trust criteria based on characteristics related to business dominate the criteria for a partner’s competences and personality. The differences between explicit and implicit trust criteria in Russian and European publications are not statistically significant. Nevertheless, on average, the difference between implicit and explicit assumptions of confidence is 0.13 in Russian studies and 0.34 in European studies. The study revealed that small companies entering the international market should consider the risks associated with a failure to understand what a business partner considers an implicit sign for triggering business relations and trust.
- Published
- 2018
4. Explicit and Implicit Trust Criteria in Business Partnerships
- Author
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Ismagilova, F, primary and Boštjančič, E, additional
- Published
- 2018
- Full Text
- View/download PDF
5. Comparative Study of Russian and Slovenian Managers Using Subjective Criteria to Control Their Professional Performance
- Author
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Boštjančič, E., Ismagilova, F. S., Mirolyubova, G., Janza, N., Boštjančič, E., Ismagilova, F. S., Mirolyubova, G., and Janza, N.
- Abstract
In this article, the first stage results of a Russian-Slovenian cross-cultural study are presented. The main purpose of the study is to describe key structural factors in the subjective criteria of performance monitoring used by Russian and Slovenian managers. The study, which comprises three steps, is of a comparative nature. In the first stage, differences between the monitoring systems of Russian and Slovenian managers are investigated. In terms of the theoretical background of the study, the Model of subjective criteria used by managers to control their performance efficiency (G. Myroliubova & F. Ismagilova) was applied. In order to collect empirical data, a Questionnaire was developed and implemented on the basis of that Model. The study discovered that the measurable and weakly measurable monitoring criteria used by Russians and Slovenians are similar. Significant differences were identified: (a) between the mean values of measurable criteria for Russian (56.11) and Slovenian (60.39) samples; (b) within the structure of measurable criteria for the performance monitoring of Russian and Slovenian managers; (c) between the mean values of all measurable criteria (natural, binary, relational and conformity criteria) in the Russian and Slovenian samples.
- Published
- 2017
6. SUBJECTIVE CRITERIA OF SELF-ACTIVITY CONTROL OF THE RUSSIAN AND SLOVENIAN MANAGERS: COMPARATIVE ANALYSIS OF PROFESSIONAL COMPETENCE
- Author
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Boštjančič, E., Ismagilova, F. S., Miroljubova, G. S., and Jansha, N.
- Subjects
EFFICIENCY ,MEASURABLE AND WEAKLY-MEASURABLE SUBJECTIVE CRITERIA OF CONTROL ,ИЗМЕРИМЫЕ И СЛАБОИЗМЕРИМЫЕ СУБЪЕКТИВНЫЕ КРИТЕРИИ КОНТРОЛЯ ,ЭФФЕКТИВНОСТЬ ,КОНТРОЛЬ ДЕЯТЕЛЬНОСТИ ,ACTIVITIES CONTROL - Abstract
Aim. The results of the first stage of the Russian-Slovenian crosscultural research are provided in the present article; the purpose is identification of the key factors that have an impact on the choice of control criteria of a management activity by the Russian and Slovenian leaders.Methods. Empirical information acquisition was made on the basis of the questionnaire «Subjective criteria of monitoring of activities performance» by G. Miroljubova and F. Ismagilova. The correlation analysis using nonparametric criteria (Kendall’s tau-b and Spearman’s rho), Mann – Whitney U-test and a method of descriptive statistics were used to process the received results of the research. Calculation of data was performed by means of a software package SPSS Statistics 17,0.Results. The research unit which is stated in the publication has comparative character and includes three stages. The difference of managers’ positions in Russia and Slovenia concerning self-checking of managerial activities was studied at the first stage. When researching the Russian managerial activity, listeners and graduates of the Presidential program of preparation of a managerial personnel provided by the Business School of the Ural State Federal University named after B. N. Yeltsin (Ekaterinburg) were engaged. The research has showed that both groups of measurable and weakly-measurable parameters are equally presented in the structure of subjective control criteria among managers. The significant differences are revealed between average values of the measured criteria of all types (natural, binary, criteria of a ratio and fitting) in the Russian (56,11) and Slovenian (60,39) samples. Scientific novelty. Activities control is a capability of a person to influence on the process and result of own work that is an extremely important aspect of professional competence of leading experts and managers. This aspect should be considered in programs of managerial professional training; unfortunately, it is poorly considered when training the Russian managers. The research confirmed and expanded theoretical theses on national cultural differences in managerial processes of work evaluation efficiency.Practical significance. The proposed diagnostic model which has confirmed its practical consistency, and the questionnaire developed on its basis can be considered as working tools for monitoring of the content of activity and measurement of indicators of its control among managers of various organizations. The results of diagnostics can serve as the material for correction of educational programs for training of managers in higher educational institutions, and the academic content of further vocational training courses. В статье представлены результаты первого этапа российско-словенского кросс-культурного исследования, целью которого является выявление ключевых факторов, оказывающих влияние на выбор российскими и словенскими руководителями критериев контроля управленческой деятельности. Методика исследования. Сбор эмпирической информации производился на основе опросника «Субъективные критерии контроля эффективности деятельности» («СКК») Г. Миролюбовой, Ф. Исмагиловой. Для обработки результатов исследования использовались корреляционный анализ с применением непараметрических критериев (тау-b Кендалла и ро Спирмена), Mann – Whitney U-test и метод описательной статистики. Расчет данных осуществлялся с помощью программного пакета SPSS Statistics 17,0. Результаты. Исследование, часть которого изложена в публикации, носит сравнительный характер и включает три этапа. На первом изучалось различие позиций руководящих работников России и Словении относительно самоконтроля управленческой деятельности. В российской части исследования к участию были привлечены слушатели и выпускники Президентской программы подготовки управленческих кадров, которая осуществляется на базе Бизнес-школы Уральского государственного федерального университета им. Б. Н. Ельцина (Екатеринбург). Исследование показало, что в структуре субъективных критериев контроля у менеджеров примерно в равном соотношении представлены обе группы как измеряемых, так и слабоизмеряемых параметров. Достоверные различия выявлены между средними значениями измеряемых критериев всех видов (натуральных, бинарных критериев соотношения и соответствия) в российской (56,11) и словенской (60,39) выборках. Научная новизна. Контроль деятельности – способность человека влиять на процесс и результат собственной работы – чрезвычайно важный аспект профессиональной компетенции ведущих специалистов и управленцев, который следует учитывать в программах их профессиональной подготовки и который, к сожалению, пока слабо представлен в содержании обучения российских менеджеров. Исследование подтвердило и расширило теоретические положения о национальных культурных различиях в управленческих практиках оценки эффективности своей работы. Практическая значимость. Предложенная диагностическая модель, подтвердившая свою практическую состоятельность, и разработанный на ее основе опросник могут рассматриваться как рабочие инструменты для мониторинга содержания деятельности и измерения показателей ее контроля у руководителей различных организаций. Результаты диагностики, в свою очередь, могут служить материалом для коррекции образовательных программ по подготовке менеджеров в вузах и содержания курсов повышения квалификации.
- Published
- 2016
7. Building resilience after suffering from burnout syndrome: percieved changes in personality, views, values and behaviours connected with work
- Author
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Boštjančič, E.
- Subjects
BURNOUT RECOVERY ,WORK ,PERSONALITY ,VALUES ,RESILIENCE ,EMPLOYEE - Abstract
Рукопись поступила в редакцию 1 июня 2016 г. Burnout is recognized as a syndrome that has a long-term impact on the employee, on his/her peers at work, and also on the productivity and efficiency. Returning to work after suffering from burnout syndrome is a big challenge for the employee, and for the employer also. The person who recovered usually has changed personality, views, values, and behaviours connected with work. She or he has to receive the necessary support from co-workers and leaders, especially in terms of understanding him/her and partially adapting his/her responsibilities at work when they return. A part of building resilience consists of an inner strength, which is the sum of the personality traits that supports the employee to deal successfully with stressful situations once back to work. In Slovenia the study focused on building resilience after suffering from burnout syndrome was conducted. Its results indicated a need for implementing organized and systematic forms of assistance spread between leaders, peers, friends, family, and the system as a whole.
- Published
- 2016
8. Субъективные критерии контроля собственной деятельности российских и словенских руководителей: сравнительный анализ профессиональной компетенции
- Author
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Boštjančič, E., Ismagilova, F. S., Miroljubova, G. S., Jansha, N., Боштянчич, Е., Исмагилова, Ф. С., Миролюбова, Г. С., Янша, Н., Boštjančič, E., Ismagilova, F. S., Miroljubova, G. S., Jansha, N., Боштянчич, Е., Исмагилова, Ф. С., Миролюбова, Г. С., and Янша, Н.
- Abstract
Aim. The results of the first stage of the Russian-Slovenian crosscultural research are provided in the present article; the purpose is identification of the key factors that have an impact on the choice of control criteria of a management activity by the Russian and Slovenian leaders.Methods. Empirical information acquisition was made on the basis of the questionnaire «Subjective criteria of monitoring of activities performance» by G. Miroljubova and F. Ismagilova. The correlation analysis using nonparametric criteria (Kendall’s tau-b and Spearman’s rho), Mann – Whitney U-test and a method of descriptive statistics were used to process the received results of the research. Calculation of data was performed by means of a software package SPSS Statistics 17,0.Results. The research unit which is stated in the publication has comparative character and includes three stages. The difference of managers’ positions in Russia and Slovenia concerning self-checking of managerial activities was studied at the first stage. When researching the Russian managerial activity, listeners and graduates of the Presidential program of preparation of a managerial personnel provided by the Business School of the Ural State Federal University named after B. N. Yeltsin (Ekaterinburg) were engaged. The research has showed that both groups of measurable and weakly-measurable parameters are equally presented in the structure of subjective control criteria among managers. The significant differences are revealed between average values of the measured criteria of all types (natural, binary, criteria of a ratio and fitting) in the Russian (56,11) and Slovenian (60,39) samples. Scientific novelty. Activities control is a capability of a person to influence on the process and result of own work that is an extremely important aspect of professional competence of leading experts and managers. This aspect should be considered in programs of managerial professional training; unfortunately, it is poorly, В статье представлены результаты первого этапа российско-словенского кросс-культурного исследования, целью которого является выявление ключевых факторов, оказывающих влияние на выбор российскими и словенскими руководителями критериев контроля управленческой деятельности. Методика исследования. Сбор эмпирической информации производился на основе опросника «Субъективные критерии контроля эффективности деятельности» («СКК») Г. Миролюбовой, Ф. Исмагиловой. Для обработки результатов исследования использовались корреляционный анализ с применением непараметрических критериев (тау-b Кендалла и ро Спирмена), Mann – Whitney U-test и метод описательной статистики. Расчет данных осуществлялся с помощью программного пакета SPSS Statistics 17,0. Результаты. Исследование, часть которого изложена в публикации, носит сравнительный характер и включает три этапа. На первом изучалось различие позиций руководящих работников России и Словении относительно самоконтроля управленческой деятельности. В российской части исследования к участию были привлечены слушатели и выпускники Президентской программы подготовки управленческих кадров, которая осуществляется на базе Бизнес-школы Уральского государственного федерального университета им. Б. Н. Ельцина (Екатеринбург). Исследование показало, что в структуре субъективных критериев контроля у менеджеров примерно в равном соотношении представлены обе группы как измеряемых, так и слабоизмеряемых параметров. Достоверные различия выявлены между средними значениями измеряемых критериев всех видов (натуральных, бинарных критериев соотношения и соответствия) в российской (56,11) и словенской (60,39) выборках. Научная новизна. Контроль деятельности – способность человека влиять на процесс и результат собственной работы – чрезвычайно важный аспект профессиональной компетенции ведущих специалистов и управленцев, который следует учитывать в программах их профессиональной подготовки и который, к сожалению, пока слабо представлен в содержании обучения российс
- Published
- 2016
9. SUBJECTIVE CRITERIA OF SELF-ACTIVITY CONTROL OF THE RUSSIAN AND SLOVENIAN MANAGERS: COMPARATIVE ANALYSIS OF PROFESSIONAL COMPETENCE
- Author
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Boštjančič, E., primary, Ismagilova, F. S., additional, Miroljubova, G. S., additional, and Jansha, N., additional
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- 2016
- Full Text
- View/download PDF
10. Hepatic expression of miR-122, miR-126, miR-136 and miR-181a and their correlation to histopathological and clinical characteristics of patients with hepatitis C
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Boštjančič, E., primary, Bandelj, E., additional, Luzar, B., additional, Poljak, M., additional, and Glavač, D., additional
- Published
- 2014
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11. The Relationship between Control over a Deal and Cognitive-Based Trust in an International Business Partnership
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Boštjančič Eva, Ismagilova Fayruza, and Maltcev Alexey
- Subjects
trust ,business relationships ,business partner ,control over deal ,obligations ,slovenia ,russia ,Business ,HF5001-6182 - Abstract
Background and purpose: Trust is embedded into the national culture. It is a tool that helps create strategic partnerships and facilitates deals that carry certain risks. Cultural differences and norms can affect business relations, but more often focus is on the obvious differences. Although trust in a business partner may be due to non-obvious differences, for example, which part of the deal the partner wants to control himself and which part of the deal he wants to give to the partner to control. If the difference between the real and desired levels of the partner’s control over the deal is large, then is trust possible, especially in intercultural business relations?
- Published
- 2020
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12. Dynamic expression of 11 miRNAs in 83 consecutive primary and corresponding recurrent glioblastoma: correlation to treatment, time to recurrence, overall survival and MGMT methylation status
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Matos Bostjan, Bostjancic Emanuela, Matjasic Alenka, Popovic Mara, and Glavac Damjan
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glioblastoma ,recurrent ,radiotherapy ,chemotherapy ,mirna ,expression ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Glioblastoma (GBM) is the most common and the most malignant glioma subtype. Among numerous genetic alterations, miRNAs contribute to pathogenesis of GBM and it is suggested that also to GBM recurrence and resistance to therapy. Based on publications, we have selected 11 miRNAs and analyzed their expression in GBM. We hypothesized that selected miRNAs are differentially expressed and involved in primary as well as in recurrent GBM, that show significant expressional differences when different treatment options are in question, and that are related to certain patients and tumor characteristics.
- Published
- 2018
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13. Sclerosing melanocytic lesions (sclerosing melanomas with nevoid features and sclerosing nevi with pseudomelanomatous features) – an analysis of 90 lesions
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Grcar-Kuzmanov Biljana, Bostjancic Emanuela, Bandres Juan Antonio Contreras, and Pizem Joze
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sclerosing melanoma ,sclerosing nevus ,fibrosis ,regression ,trauma ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Sclerosing melanocytic lesions, which are characterized by either focal or diffuse sclerosis in the dermal component and atypical proliferation of predominantly nevoid melanocytes, remain poorly defined. Our aim was to analyze systematically their morphologic spectrum, especially the distinction between sclerosing melanocytic nevus and sclerosing melanoma, which has not been well documented.
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- 2018
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14. Long-term survival in glioblastoma: methyl guanine methyl transferase (MGMT) promoter methylation as independent favourable prognostic factor
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Smrdel Uros, Popovic Mara, Zwitter Matjaz, Bostjancic Emanuela, Zupan Andrej, Kovac Viljem, Glavac Damjan, Bokal Drago, and Jerebic Janja
- Subjects
glioblastoma ,long-term survival ,methyl guanine methyl transferase ,prognostic factor ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
In spite of significant improvement after multi-modality treatment, prognosis of most patients with glioblastoma remains poor. Standard clinical prognostic factors (age, gender, extent of surgery and performance status) do not clearly predict long-term survival. The aim of this case-control study was to evaluate immuno-histochemical and genetic characteristics of the tumour as additional prognostic factors in glioblastoma.
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- 2016
- Full Text
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15. Returning to work after suffering from burnout syndrome: Perceived changes in personality, views, values, and behaviors connected with work
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Boštjančič Eva and Koračin Nika
- Subjects
job burnout ,burnout recovery ,vocational rehabilitation ,working population ,personality ,values ,Psychology ,BF1-990 - Abstract
To date only a few studies have focused on returning to work after suffering from burnout syndrome. Participants were asked about their perceived work effectiveness, changes in their personal values, and obstacles and support factors that they encountered when they returned to work. Among the 27 individuals of various professions included in the study, 18 achieved an average or a high score on the Maslach Burnout Inventory, which was used to conduct a semi-structured interview. The answers were later processed by analyzing the content. The results showed that burned-out individuals only slowly return to work after recovery. When they return to work, they encounter changes in personality, personal values, and work effectiveness, and they only receive partial support from the environment. The results draw attention to insufficient detection of the disease by medical staff and employers in Slovenia. Recovering from burnout is a long-term process, which depends most on individuals themselves. At the same time, they can receive the necessary support from their family and coworkers, especially in terms of understanding them and partially adapting their responsibilities at work when they return. This study draws attention to a number of factors that can influence an individual’s process of returning to work and can be used as a basis for developing systematic rehabilitation programs.
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- 2014
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16. Working women's roles in Slovenia: Conflict or enrichment?
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Boštjančič Eva
- Subjects
women ,work ,role ,life orientation ,life satisfaction ,Slovenia ,Psychology ,BF1-990 - Abstract
In the past, men and women had different experiences in balancing their professional and family lives. This is why they see their roles differently today. Our scope of interest in this article is employed women in Slovenia. Working women's various roles today may lead to conflict or enrichment. This study seeks to determine the connection between their multiple roles, life orientation, and life satisfaction. This study was carried out through Internet questionnaires and it surveyed 1,298 working women. Their average age was 35.6 years. A total of 43% of participants at least had a college degree. The results show that working women are the least satisfied with their leisure time and the most satisfied with their maternal role. Women with higher career satisfaction report about higher life satisfaction. Women with multiple roles are more satisfied with their maternal role but less satisfied with their partners and leisure time. They are also more optimistic.
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- 2010
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17. MicroRNAs and cardiac sarcoplasmic reticulum calcium ATPase-2 in human myocardial infarction: expression and bioinformatic analysis
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Boštjančič Emanuela, Zidar Nina, and Glavač Damjan
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Human myocardial infarction ,Expression ,SERCA2 ,miRNA ,Bioinformatics ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Cardiac sarco(endo)plasmic reticulum calcium ATPase-2 (SERCA2) plays one of the central roles in myocardial contractility. Both, SERCA2 mRNA and protein are reduced in myocardial infarction (MI), but the correlation has not been always observed. MicroRNAs (miRNAs) act by targeting 3'-UTR mRNA, causing translational repression in physiological and pathological conditions, including cardiovascular diseases. One of the aims of our study was to identify miRNAs that could influence SERCA2 expression in human MI. Results The protein SERCA2 was decreased and 43 miRNAs were deregulated in infarcted myocardium compared to corresponding remote myocardium, analyzed by western blot and microRNA microarrays, respectively. All the samples were stored as FFPE tissue and in RNAlater. miRNAs binding prediction to SERCA2 including four prediction algorithms (TargetScan, PicTar, miRanda and mirTarget2) identified 213 putative miRNAs. TAM and miRNApath annotation of deregulated miRNAs identified 18 functional and 21 diseased states related to heart diseases, and association of the half of the deregulated miRNAs to SERCA2. Free-energy of binding and flanking regions (RNA22, RNAfold) was calculated for 10 up-regulated miRNAs from microarray analysis (miR-122, miR-320a/b/c/d, miR-574-3p/-5p, miR-199a, miR-140, and miR-483), and nine miRNAs deregulated from microarray analysis were used for validation with qPCR (miR-21, miR-122, miR-126, miR-1, miR-133, miR-125a/b, and miR-98). Based on qPCR results, the comparison between FFPE and RNAlater stored tissue samples, between Sybr Green and TaqMan approaches, as well as between different reference genes were also performed. Conclusion Combing all the results, we identified certain miRNAs as potential regulators of SERCA2; however, further functional studies are needed for verification. Using qPCR, we confirmed deregulation of nine miRNAs in human MI, and show that qPCR normalization strategy is important for the outcome of miRNA expression analysis in human MI.
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- 2012
- Full Text
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18. Tumour budding and poorly differentiated clusters in colon cancer – different manifestations of partial epithelial-mesenchymal transition
- Author
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Ana Pavlič, Emanuela Boštjančič, Rajko Kavalar, Bojan Ilijevec, Serena Bonin, Fabrizio Zanconati, Nina Zidar, Pavlič, A., Boštjančič, E., Kavalar, R., Ilijevec, B., Bonin, S., Zanconati, F., and Zidar, N.
- Subjects
epitheliall–mesenchymal transition ,Epithelial-Mesenchymal Transition ,epitelno-mezenhimski prehod ,epithelial-mesenchymal transition ,colorectal cancer ,udc:616 ,United Kingdom ,Pathology and Forensic Medicine ,Gene Expression Regulation, Neoplastic ,partial epithelial–mesenchymal transition ,MicroRNAs ,tumour budding ,kolorektalni rak ,colon cancer ,miRNA ,partial epithelial-mesenchymal transition ,poorly differentiated clusters ,Cell Line, Tumor ,Colonic Neoplasms ,Humans ,rak debelega črevesa ,Colorectal Neoplasms ,poorly differentiated cluster - Abstract
Morphological features including infiltrative growth, tumour budding (TB), and poorly differentiated clusters (PDCs) have a firmly established negative predictive value in colorectal cancer (CRC). Despite extensive research, the mechanisms underlying different tumour growth patterns remain poorly understood. The aim of this study was to investigate the involvement of epithelial-mesenchymal transition (EMT) in TB and PDCs in CRC. Using laser-capture microdissection, we obtained distinct parts of the primary CRC including TB, PDCs, expansive tumour front, and the central part of the tumour, and analysed the expression of EMT-related markers, i.e. the miR-200 family, ZEB1/2, RND3, and CDH1. In TB, the miR-200 family and CDH1 were significantly downregulated, while ZEB2 was significantly upregulated. In PDCs, miR-141, miR-200c, and CDH1 were significantly downregulated. No significant differences were observed in the expression of any EMT-related markers between the expansive tumour front and the central part of the tumour. Our results suggest that both TB and PDCs are related to partial EMT. Discrete differences in morphology and expression of EMT-related markers between TB and PDCs indicate that they represent different manifestations of partial EMT. TB seems to be closer to complete EMT than PDCs. © 2022 The Authors. The Journal of Pathology published by John WileySons Ltd on behalf of The Pathological Society of Great Britain and Ireland.
- Published
- 2022
19. Multifocal vascular neoplasm with an EWSR1::NFATC2 gene fusion and progression to epithelioid angiosarcoma - a case report.
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Pižem J, Boštjančič E, Zupan A, Salapura V, Mavčič B, Blatnik A, Blatnik O, Unk M, Kern I, Švarc M, and Matjašič A
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- 2024
- Full Text
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20. Epithelial-mesenchymal transition associated markers in sarcomatoid transformation of clear cell renal cell carcinoma.
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Čugura T, Boštjančič E, Uhan S, Hauptman N, and Jeruc J
- Subjects
- Humans, Male, Middle Aged, Female, Aged, Cadherins genetics, Cadherins metabolism, Gene Expression Regulation, Neoplastic, Antigens, CD genetics, Antigens, CD metabolism, Twist-Related Protein 1 genetics, Twist-Related Protein 1 metabolism, Snail Family Transcription Factors genetics, Snail Family Transcription Factors metabolism, Zinc Finger E-box-Binding Homeobox 1 genetics, Zinc Finger E-box-Binding Homeobox 1 metabolism, Repressor Proteins genetics, Repressor Proteins metabolism, Cell Transformation, Neoplastic genetics, Cell Transformation, Neoplastic pathology, Cell Transformation, Neoplastic metabolism, Adult, Nuclear Proteins, Epithelial-Mesenchymal Transition genetics, Carcinoma, Renal Cell pathology, Carcinoma, Renal Cell genetics, Carcinoma, Renal Cell metabolism, Kidney Neoplasms pathology, Kidney Neoplasms genetics, Kidney Neoplasms metabolism, MicroRNAs genetics, Biomarkers, Tumor genetics, Biomarkers, Tumor metabolism, Vimentin metabolism, Vimentin genetics, Zinc Finger E-box Binding Homeobox 2 genetics, Zinc Finger E-box Binding Homeobox 2 metabolism
- Abstract
Epithelial-mesenchymal transition (EMT) plays a pivotal role in the development and progression of many cancers. Partial EMT (pEMT) could represent a critical step in tumor migration and dissemination. Sarcomatoid renal cell carcinoma (sRCC) is an aggressive form of renal cell carcinoma (RCC) composed of a carcinomatous (sRCC-Ca) and sarcomatous (sRCC-Sa) component. The role of (p)EMT in the progression of RCC to sRCC remains unclear. The aim of this study was to investigate the involvement of (p)EMT in RCC and sRCC. Tissue samples from 10 patients with clear cell RCC (ccRCC) and 10 patients with sRCC were selected. The expression of main EMT markers (miR-200 family, miR-205, SNAI1/2, TWIST1/2, ZEB1/2, CDH1/2, VIM) was analyzed by qPCR in ccRCC, sRCC-Ca, and sRCC-Sa and compared to non-neoplastic tissue and between both groups. Expression of E-cadherin, N-cadherin, vimentin and ZEB2 was analyzed using immunohistochemistry. miR-200c was downregulated in sRCC-Ca compared to ccRCC, while miR-200a was downregulated in sRCC-Sa compared to ccRCC. CDH1 was downregulated in sRCC-Sa when compared to any other group. ZEB2 was downregulated in ccRCC and sRCC compared to corresponding non-neoplastic kidney. A positive correlation was observed between CDH1 expression and miR-200a/b/c. Our results suggest that full EMT is not present in sRCC. Instead, discreet molecular differences exist between ccRCC, sRCC-Ca, and sRCC-Sa, possibly representing distinct intermediary states undergoing pEMT., Competing Interests: Declaration of competing interest The authors declare that there are no conflicts of interest., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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21. Differential influence of basic psychological needs on burnout and academic achievement in three southeast European countries.
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Zupančič N, Palanović A, Ružojčić M, Boštjančič E, Popov B, Jelić D, and Galić Z
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- Humans, Cross-Sectional Studies, Burnout, Psychological, Surveys and Questionnaires, Academic Success, Students, Medical psychology, Burnout, Professional psychology, Psychological Tests, Self Report
- Abstract
Several studies show the importance of basic psychological needs (BPN) for decreasing burnout and increasing grade point average (GPA), but, to our knowledge, no prior study has explored the potential contextual differences in Southeastern European countries. Moreover, even less is known about how this relationship may differ during stressful (exam) and less stressful (beginning of the semester) periods. Measures of the Maslach Burnout Inventory-Student Survey and BPN Satisfaction and Frustration Scale were translated and adapted. The study included a cross-sectional sample of students from Croatia, Serbia and Slovenia during beginning of the semester and exam period. Across all countries and both contexts, students with high autonomy need satisfaction showed the strongest decrease in burnout, followed by those with high competence need satisfaction. Students with high academic achievement showed an increase due to competence need satisfaction. Competence and autonomy need satisfaction were higher beginning of a semester, while burnout was higher during the exam period. BPN play an important role in educational settings-satisfaction of the need for autonomy and competence protects students from burnout, and the need for competence predicts greater academic achievement regardless of culture or time of the semester., (© 2023 The Authors. International Journal of Psychology published by John Wiley & Sons Ltd on behalf of International Union of Psychological Science.)
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- 2024
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22. Tissue miRNA Profile Is Associated with Acute Tubular Necrosis, Rejection Phenotypes and BK Polyomavirus-Associated Nephropathy in Human Kidney Allografts.
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Bezeljak N, Kojc N, Arnol M, Večerić-Haler Ž, and Boštjančič E
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- Humans, Male, Female, Middle Aged, Adult, Phenotype, Aged, Tumor Virus Infections genetics, Tumor Virus Infections pathology, Tumor Virus Infections complications, Kidney Diseases genetics, Kidney Diseases pathology, Kidney Diseases virology, Kidney pathology, Kidney virology, MicroRNAs genetics, Kidney Transplantation adverse effects, Graft Rejection genetics, Graft Rejection pathology, BK Virus genetics, Polyomavirus Infections genetics, Polyomavirus Infections complications, Polyomavirus Infections pathology, Allografts, Kidney Tubular Necrosis, Acute pathology, Kidney Tubular Necrosis, Acute genetics
- Abstract
Introduction: MicroRNAs (miRNAs), short noncoding RNAs, are involved in the modulation of gene expression, mainly by inhibiting the translation of mRNAs. Under physiological conditions, miRNAs are involved in viral infections and immune responses, among others; aberrant miRNA expression has been associated with kidney transplant pathologies, but a comprehensive comparison of later, particularly in tissue sections, is still pending., Methods: We used the genome-wide screening of miRNAs to identify those potentially involved in the disease processes after kidney transplantation. RNA was isolated from formalin-fixed paraffin-embedded kidney biopsy samples. Study included 8 patients with acute tubular necrosis (ATN), 8 patients with antibody-mediated rejection (ABMR), 10 patients with T-cell-mediated rejection (TCMR), 10 patients with BK polyomavirus-associated nephropathy (BKPyVAN), and 12 surveillance biopsies from patients with stable allograft function and no major abnormalities (normal allografts, CTRL)., Results: We found 136 miRNAs differentially expressed in diseased kidney transplant tissue compared with normal allografts; of these, 74 miRNAs were differentially expressed in ABMR, 65 in ATN, 62 in BKPyVAN, 69 in TCMR, and 16 miRNAs were not associated with a specific disease phenotype. In addition, 29 miRNAs were differently expressed between ABMR and ATN, 39 between BKPyVAN and TCMR, and 20 between BKPyVAN and ABMR, and 38 between ABMR and TCMR., Conclusion: Our findings show that miRNA derived from kidney allograft biopsy samples represent an additional diagnostic tool to distinguish different disease phenotypes. This finding has the potential to assist clinicians in therapeutic decision-making and to translate to noninvasive monitoring of patients, e.g., blood samples., (© 2023 S. Karger AG, Basel.)
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- 2024
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23. Analyzing the invasive front of colorectal cancer - By punching tissue block or laser capture microdissection?
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Pavlič A, Urh K, Boštjančič E, and Zidar N
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- Humans, Laser Capture Microdissection, Down-Regulation, Epithelial-Mesenchymal Transition genetics, Gene Expression Regulation, Neoplastic, MicroRNAs metabolism, Colorectal Neoplasms genetics, Colorectal Neoplasms pathology, Colonic Neoplasms pathology
- Abstract
The aim of this study was to determine the advantages and limitations of two commonly used sampling techniques, i.e., punching tissue block (PTB) and laser capture microdissection (LCM) when investigating tumor cell-derived gene expression patterns at the invasive front of colorectal cancer (CRC). We obtained samples from 20 surgically removed CRCs at locations crucial for tumor progression, i.e., the central part, the expansive front and the infiltrative front exhibiting tumor budding (TB), using both sampling techniques. At each location, we separately analyzed the expressions of miR-200 family (miR-141, miR-200a, miR-200b, miR-200c and miR-429), known as reliable markers of epithelial-mesenchymal transition (EMT). We found significant downregulation of all members of miR-200 family at the infiltrative front in comparison to the central part regardless of the used sampling technique. However, when comparing miR-200 expression between the expansive and the infiltrative front, we found significant downregulation of all tested miR-200 at the infiltrative front only in samples obtained by LCM. Our results suggest that, PTB is an adequate technique for studying the differences in tumor gene expression between the central part and the invasive front of CRC, but is insufficient to analyze and compare morphologically distinct patterns along the invasive front including TB. For this purpose, the use of LCM is essential., Competing Interests: Declaration of Competing Interest None., (Copyright © 2023. Published by Elsevier GmbH.)
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- 2023
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24. Selection and Evaluation of mRNA and miRNA Reference Genes for Expression Studies (qPCR) in Archived Formalin-Fixed and Paraffin-Embedded (FFPE) Colon Samples of DSS-Induced Colitis Mouse Model.
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Unkovič A, Boštjančič E, Belič A, and Perše M
- Abstract
The choice of appropriate reference genes is essential for correctly interpreting qPCR data and results. However, the majority of animal studies use a single reference gene without any prior evaluation. Therefore, many qPCR results from rodent studies can be misleading, affecting not only reproducibility but also translatability. In this study, the expression stability of reference genes for mRNA and miRNA in archived FFPE samples of 117 C57BL/6JOlaHsd mice (males and females) from 9 colitis experiments (dextran sulfate sodium; DSS) were evaluated and their expression analysis was performed. In addition, we investigated whether normalization reduced/neutralized the influence of inter/intra-experimental factors which we systematically included in the study. Two statistical algorithms (NormFinder and Bestkeeper) were used to determine the stability of reference genes. Multivariate analysis was made to evaluate the influence of normalization with different reference genes on target gene expression in regard to inter/intra-experimental factors. Results show that archived FFPE samples are a reliable source of RNA and imply that the FFPE procedure does not change the ranking of stability of reference genes obtained in fresh tissues. Multivariate analysis showed that the histological picture is an important factor affecting the expression levels of target genes., Competing Interests: The authors declare no conflict of interest.
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- 2023
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25. Autologous Mesenchymal Stem Cells for Treatment of Chronic Active Antibody-Mediated Kidney Graft Rejection: Report of the Phase I/II Clinical Trial Case Series.
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Večerić-Haler Ž, Sever M, Kojc N, Halloran PF, Boštjančič E, Mlinšek G, Oblak M, Poženel P, Švajger U, Hartman K, Kneževič M, Barlič A, Girandon L, Aleš Rigler A, Zver S, Buturović Ponikvar J, and Arnol M
- Subjects
- Humans, Kidney, Graft Rejection, Mesenchymal Stem Cells
- Abstract
Mesenchymal stem cell (MSCs) therapy has already been studied in kidney transplant recipients (KTRs), and the available data showed that it is safe and well tolerated. The aim of this study was to evaluate the safety and efficacy of autologous MSCs in combination with standard therapy in KTRs with biopsy-proven chronic active antibody-mediated rejection (AMR). Patients with biopsy-proven chronic active AMR received treatment with autologous bone marrow-derived MSCs (3 × 10
6 cells/kg iv) after completion of standard therapy and were followed for up to 12 months. The primary endpoints were safety by assessment of adverse events. Secondary endpoints included assessment of kidney graft function, immunological and histological changes related to AMR activity and chronicity assessed by conventional microscopy and molecular transcripts. A total of 3 patients were enrolled in the study before it was terminated prematurely because of adverse events. We found that AMR did not improve in any of the patients after treatment with MSCs. In addition, serious adverse events were observed in one case when autologous MSCs therapy was administered in the late phase after kidney transplantation, which requires further elucidation., Competing Interests: Authors MK, AB, and LG were employed by the company Educell d.o.o Cell Therapy Service. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Večerić-Haler, Sever, Kojc, Halloran, Boštjančič, Mlinšek, Oblak, Poženel, Švajger, Hartman, Kneževič, Barlič, Girandon, Aleš Rigler, Zver, Buturović Ponikvar and Arnol.)- Published
- 2022
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26. Intra‑tumor heterogeneity of cancer stem cell‑related genes and their potential regulatory microRNAs in metastasizing colorectal carcinoma.
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Urh K, Zidar N, Tomažič A, and Boštjančič E
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- Formaldehyde, Gene Expression Regulation, Neoplastic, Humans, Lymphatic Metastasis genetics, Neoplastic Stem Cells pathology, Colorectal Neoplasms genetics, Colorectal Neoplasms pathology, Liver Neoplasms genetics, MicroRNAs genetics
- Abstract
Intra‑tumor heterogeneity (ITH) is related to cancer progression, therapy resistance and recurrences, and is one of the challenging fields in cancerogenesis research. Cancer stem cells (CSC) are thought to be crucially involved in the pathogenesis of several cancer types, including colorectal carcinoma (CRC), and associated with ITH. In the present study, the expression gradient of four genes related to CSC ( L1TD1, SLITRK6, ST6GALNAC1 and TCEA3 ) and their potential regulatory microRNAs (miRNAs) were investigated in the central part and invasive front of the primary tumor, as well as in lymph node and liver metastases. In total, 63 formalin‑fixed paraffin‑embedded biopsy samples of primary tumor (central part, invasive tumor front), as well as lymph node and liver metastases from 19 patients with CRC, were analyzed. The expression of selected genes ( L1TD1, SLITRK6, ST6GALNAC1 and TCEA3 ) and miRNAs (miR‑199a‑3p, miR‑425‑5p, miR‑1225‑3p, miR‑1233‑3p and miR‑1303) was evaluated using reverse transcription‑quantitative PCR. Significant differences in expression were identified for all investigated genes in lymph node metastasis, but not in the liver metastases. All investigated miRNAs were significantly differentially expressed in lymph node metastasis, and miR‑199a‑3p, miR‑425‑5p and miR‑1233‑3p in liver metastasis. Furthermore, a negative correlation between the expression of miR‑199a‑3p and expression of its potential target gene SLITRK6 was confirmed. The present results provide further evidence that expression of CSC‑related genes and their potential regulatory miRNAs contribute to ITH in CRC, lymph node and liver metastasis. The SLITRK6 gene and its regulatory miRNA miR‑199a‑3p are promising for further validation in functional studies to deepen the present understanding of the regulation of CSC‑related genes in CRC.
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- 2022
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27. Tumour budding and poorly differentiated clusters in colon cancer - different manifestations of partial epithelial-mesenchymal transition.
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Pavlič A, Boštjančič E, Kavalar R, Ilijevec B, Bonin S, Zanconati F, and Zidar N
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- Cell Line, Tumor, Epithelial-Mesenchymal Transition, Gene Expression Regulation, Neoplastic, Humans, United Kingdom, Colonic Neoplasms genetics, Colorectal Neoplasms pathology, MicroRNAs genetics, MicroRNAs metabolism
- Abstract
Morphological features including infiltrative growth, tumour budding (TB), and poorly differentiated clusters (PDCs) have a firmly established negative predictive value in colorectal cancer (CRC). Despite extensive research, the mechanisms underlying different tumour growth patterns remain poorly understood. The aim of this study was to investigate the involvement of epithelial-mesenchymal transition (EMT) in TB and PDCs in CRC. Using laser-capture microdissection, we obtained distinct parts of the primary CRC including TB, PDCs, expansive tumour front, and the central part of the tumour, and analysed the expression of EMT-related markers, i.e. the miR-200 family, ZEB1/2, RND3, and CDH1. In TB, the miR-200 family and CDH1 were significantly downregulated, while ZEB2 was significantly upregulated. In PDCs, miR-141, miR-200c, and CDH1 were significantly downregulated. No significant differences were observed in the expression of any EMT-related markers between the expansive tumour front and the central part of the tumour. Our results suggest that both TB and PDCs are related to partial EMT. Discrete differences in morphology and expression of EMT-related markers between TB and PDCs indicate that they represent different manifestations of partial EMT. TB seems to be closer to complete EMT than PDCs. © 2022 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland., (© 2022 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.)
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- 2022
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28. Bioinformatics Analysis of RNA-seq Data Reveals Genes Related to Cancer Stem Cells in Colorectal Cancerogenesis.
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Urh K, Zidar N, and Boštjančič E
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- Humans, Computational Biology, Lymphatic Metastasis pathology, RNA-Seq, Neoplastic Stem Cells metabolism, Colorectal Neoplasms pathology, Adenoma metabolism, Carcinoma metabolism
- Abstract
Cancer stem cells (CSC) play one of the crucial roles in the pathogenesis of various cancers, including colorectal cancer (CRC). Although great efforts have been made regarding our understanding of the cancerogenesis of CRC, CSC involvement in CRC development is still poorly understood. Using bioinformatics and RNA-seq data of normal mucosa, colorectal adenoma, and carcinoma ( n = 106) from GEO and TCGA, we identified candidate CSC genes and analyzed pathway enrichment analysis (PEI) and protein-protein interaction analysis (PPI). Identified CSC-related genes were validated using qPCR and tissue samples from 47 patients with adenoma, adenoma with early carcinoma, and carcinoma without and with lymph node metastasis and were compared to normal mucosa. Six CSC-related genes were identified: ANLN , CDK1 , ECT2 , PDGFD , TNC , and TNXB . ANLN , CDK1, ECT2, and TNC were differentially expressed between adenoma and adenoma with early carcinoma. TNC was differentially expressed in CRC without lymph node metastases whereas ANLN , CDK1, and PDGFD were differentially expressed in CRC with lymph node metastases compared to normal mucosa. ANLN and PDGFD were differentially expressed between carcinoma without and with lymph node metastasis. Our study identified and validated CSC-related genes that might be involved in early stages of CRC development (ANLN, CDK1, ECT2, TNC) and in development of metastasis (ANLN, PDGFD).
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- 2022
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29. miR-200b , ZEB2 and PTPN13 Are Downregulated in Colorectal Carcinoma with Serosal Invasion.
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Ranković B, Boštjančič E, Zidar N, Žlajpah M, and Jeruc J
- Abstract
Serosal invasion is an independent negative prognostic factor in certain cancers, including CRC. However, the mechanisms behind serosal invasion are poorly understood. We therefore assumed that epithelial-mesenchymal transition (EMT) might be involved. Our study included 34 patients with CRC, 3 stage pT2, 14 stage pT3 and 17 showing serosal invasion (stage pT4a according to TNM staging system). RNA isolated from formalin-fixed paraffin-embedded tissue samples was analysed for expression of the miR-200 family and their target genes CDKN1B, ONECUT2, PTPN13, RND3, SOX2, TGFB2 and ZEB2 using real-time PCR. We found upregulation of miR-200b and ONECUT2 in CRC pT3 and pT4a compared to normal mucosa, and downregulation of CDKN1B in CRC pT3. Moreover, we observed, downregulation of miR-200b, PTPN13 and ZEB2 in CRC with serosal invasion (pT4a) compared to pT3. Our results suggest the involvement of partial EMT in serosal invasion of CRC. In addition, PTPN13 seems to be one of the important regulators involved in serosal invasion, and ONECUT2 in tumour growth.
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- 2022
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30. Long Non-Coding RNAs as Potential Regulators of EMT-Related Transcription Factors in Colorectal Cancer-A Systematic Review and Bioinformatics Analysis.
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Pavlič A, Hauptman N, Boštjančič E, and Zidar N
- Abstract
Epithelial-mesenchymal transition (EMT) plays a pivotal role in carcinogenesis, influencing cancer progression, metastases, stemness, immune evasion, metabolic reprogramming and therapeutic resistance. EMT in most carcinomas, including colorectal carcinoma (CRC), is only partial, and can be evidenced by identification of the underlying molecular drivers and their regulatory molecules. During EMT, cellular reprogramming is orchestrated by core EMT transcription factors (EMT-TFs), namely ZEB1/2 , TWIST1/2 , SNAI1 ( SNAIL ) and SNAI2 ( SLUG ). While microRNAs have been clearly defined as regulators of EMT, the role of long non-coding RNAs (lncRNAs) in EMT is poorly defined and controversial. Determining the role of lncRNAs in EMT remains a challenge, because they are involved in a number of cellular pathways and are operating through various mechanisms. Adding to the complexity, some lncRNAs have controversial functions across different tumor types, acting as EMT promotors in some tumors and as EMT suppressors in others. The aim of this review is to summarize the role of lncRNAs involved in the regulation of EMT-TFs in human CRC. Additional candidate lncRNAs were identified through a bioinformatics analysis.
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- 2022
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31. Differential Expression of Decorin in Metastasising Colorectal Carcinoma Is Regulated by miR-200c and Long Non-Coding RNAs.
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Žlajpah M, Urh K, Grosek J, Zidar N, and Boštjančič E
- Abstract
Decorin (DCN) is one of the matricellular proteins that participate in normal cells' function as well as in cancerogenesis. While its expression in primary tumours is well known, there is limited data about its expression in metastases. Furthermore, the post-transcriptional regulation of DCN is still questionable, although it is well accepted that it is an important mechanism of developing metastatic cancer. The aim of our study was to analyse the expression of DCN and its potential regulatory ncRNAs in metastatic colorectal carcinoma (CRC). Nineteen patients with metastatic CRC were included. Using qPCR, we analysed the expression of DCN , miR-200c and five lncRNAs ( LUCAT1 , MALAT1 , lncTCF7 , XIST , and ZFAS1 ) in lymph node and liver metastases in comparison to the invasive front and central part of a primary tumour. Our results showed insignificant upregulation of DCN and significant upregulation for miR-200c , MALAT1 , lncTCF7 and ZFAS1 in metastases compared to the primary tumour. miR-200c showed a positive correlation with DCN , and the aforementioned lncRNAs exhibited a significant positive correlation with miR-200c expression in metastatic CRC. Our results suggest that DCN as well as miR-200c , MALAT1 , lncTCF7 and ZFAS1 contribute to the development of metastases in CRC and that regulation of DCN expression in CRC by ncRNAs is accomplished in an indirect manner.
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- 2022
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32. Renal Tissue miRNA Expression Profiles in ANCA-Associated Vasculitis-A Comparative Analysis.
- Author
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Bošnjak M, Večerić-Haler Ž, Boštjančič E, and Kojc N
- Subjects
- Adult, Aged, Female, Humans, Inflammation genetics, Inflammation pathology, Lymphocytes pathology, Macrophages pathology, Male, Middle Aged, Signal Transduction genetics, Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis genetics, Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis pathology, Antibodies, Antineutrophil Cytoplasmic genetics, Kidney pathology, MicroRNAs genetics, Transcriptome genetics
- Abstract
Anti-neutrophil cytoplasm antibody (ANCA)-associated vasculitis (AAV) comprises autoimmune disease entities that cause target organ damage due to relapsing-remitting small vessel necrotizing vasculitis, and which affects various vascular beds. The pathogenesis of AAV is incompletely understood, which translates to considerable disease- and treatment-related morbidity and mortality. Recent advances have implicated microRNAs (miRNAs) in AAV; however, their accurate characterization in renal tissue is lacking. The goal of this study was to identify the intrarenal miRNA expression profile in AAV relative to healthy, non-inflammatory and inflammatory controls to identify candidate-specific miRNAs. Formalin-fixed, paraffin-embedded renal biopsy tissue samples from 85 patients were obtained. Comprehensive miRNA expression profiles were performed using panels with 752 miRNAs and revealed 17 miRNA that differentiated AAV from both controls. Identified miRNAs were annotated to characterize their involvement in pathways and to define their targets. A considerable subset of differentially expressed miRNAs was related to macrophage and lymphocyte polarization and cytokines previously deemed important in AAV pathogenesis, lending credence to the obtained results. Interestingly, several members of the miR-30 family were detected. However, a validation study of these differentially expressed miRNAs in an independent, larger sample cohort is needed to establish their potential diagnostic utility.
- Published
- 2021
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33. The role of molecular diagnostics in aneurysmal and simple bone cysts - a prospective analysis of 19 lesions.
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Pižem J, Šekoranja D, Matjašič A, Zupan A, Boštjančič E, Limpel Novak KA, Salapura V, Mavčič B, Gazič B, and Dimnik K
- Subjects
- Adolescent, Adult, Bone Cysts metabolism, Bone Cysts, Aneurysmal metabolism, Cell Cycle Proteins metabolism, Child, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Fasciitis pathology, Female, Gene Fusion physiology, Humans, In Situ Hybridization, Fluorescence methods, Male, Middle Aged, NFATC Transcription Factors genetics, NFATC Transcription Factors metabolism, Pathology, Molecular methods, Promoter Regions, Genetic genetics, Prospective Studies, RNA-Binding Proteins metabolism, Tumor Suppressor Proteins metabolism, Ubiquitin Thiolesterase genetics, Ubiquitin Thiolesterase metabolism, Bone Cysts diagnosis, Bone Cysts, Aneurysmal diagnosis
- Abstract
Aneurysmal (ABC) and simple bone cysts (SBC) have been traditionally distinguished by radiological and histopathological features. However, there is some radiological and histopathological overlap between ABC and SBC. ABC is characterised by USP6 fusions while, recently, NFATC2 fusions have been found in a large proportion of SBC. Identifying these fusions may assist in confirming the diagnosis of either ABC or SBC. To elaborate the potential benefit of molecular testing, we report a prospective series of 19 consecutive bone cysts with comprehensive radiological, histopathological and molecular diagnostics. Integrating radiological, histopathological and molecular findings, 11 cysts were diagnosed as SBC and 8 as ABC. Radiologically, 6 of 11 SBC and 6 of 8 ABC were diagnosed as ABC. Fibrin-like collagen deposits were identified in 8 of 11 (73%) SBC and 3 of 8 (38%) ABC. Nodular fasciitis-like areas were identified in 6 of 8 (75%) ABC and in 7 of 11 (64%) SBC. A USP6 fusion was identified in all 8 ABC, including a novel RBM5-USP6 fusion. An NFATC2 fusion was found in 7 of 11 SBC (FUS-NFATC2 fusion in 5 and EWSR1-NFATC2 in 2 cases). There is radiological and histopathological overlap between SBC and ABC in a significant proportion of cases. A diagnosis of ABC is frequently suggested radiologically in SBC, and fibrin-like deposits, thought to be specific for SBC, may be found in some ABC. Molecular testing may significantly improve diagnostic accuracy in bone cysts., (© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2021
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34. The Role of Immune-Related miRNAs in the Pathology of Kidney Transplantation.
- Author
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Boštjančič E, Večerić-Haler Ž, and Kojc N
- Subjects
- Bacterial Infections diagnosis, Bacterial Infections genetics, Bacterial Infections immunology, Graft Rejection diagnosis, Graft Rejection genetics, Humans, Kidney Diseases diagnosis, Kidney Diseases immunology, Kidney Diseases surgery, Kidney Transplantation trends, MicroRNAs genetics, Postoperative Complications diagnosis, Postoperative Complications genetics, Graft Rejection immunology, Immunity, Cellular immunology, Kidney Transplantation adverse effects, MicroRNAs immunology, Postoperative Complications immunology
- Abstract
MicroRNAs (miRNAs) are members of the non-coding regulatory RNA family that play pivotal roles in physiological and pathological conditions, including immune response. They are particularly interesting as promising therapeutic targets, prognostic and diagnostic markers due to their easy detection in body fluids and stability. There is accumulating evidence that different miRNAs provide disease-specific signatures in liquid samples of distinct kidney injuries. Using experimental models and human samples, there have been numerous suggestions that immune-related miRNAs are also important contributors to the development of different kidney diseases as well as important markers for monitoring response after kidney transplantation. However, there are limited data for understanding their function in the molecular pathways of allograft pathologies. In our review, we focused on microRNAs that are related to different aspects of immune response after kidney transplantation.
- Published
- 2021
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35. Epithelial-Mesenchymal Transition in Colorectal Carcinoma: Comparison Between Primary Tumor, Lymph Node and Liver Metastases.
- Author
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Pavlič A, Urh K, Štajer K, Boštjančič E, and Zidar N
- Abstract
There is emerging evidence suggesting that epithelial-mesenchymal transition (EMT) and mesenchymal-epithelial transition (MET) play an important role in colorectal carcinoma (CRC), but their exact role remains controversial. Our aim was to analyze the miR-200 family as EMT markers and their target genes expression at invasive tumor front and in nodal and liver metastases. Sixty-three formalin-fixed paraffin-embedded tissue samples from 19 patients with CRC were included. Using a micropuncture technique, tissue was obtained from central part and invasive front of the primary tumor, and nodal and liver metastases. Expression of the miR-200 family and their target genes CDKN1B, ONECUT2, PTPN13, RND3, SOX2, TGFB2 and ZEB2 was analyzed using real-time PCR. We found miR-200 family down-regulation at invasive front compared to central part, and up-regulation of miRNA-200a/b/c and miR-429 in metastases compared to invasive front. At invasive front, TGFB2 was the only gene with inverse expression to the miR-200 family, whereas in metastases inverse expression was found for ONECUT2 and SOX2. CDKN1B, PTPN13 and ZEB2 were down-regulated at invasive front and up-regulated in metastases. Our results suggest the involvement of partial EMT at invasive tumor front, and partial MET in metastases in CRC, based on miR-200 family and its target genes expression., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Pavlič, Urh, Štajer, Boštjančič and Zidar.)
- Published
- 2021
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36. MicroRNAs and Long Non-Coding RNAs as Regulators of NANOG Expression in the Development of Oral Squamous Cell Carcinoma.
- Author
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Grubelnik G, Boštjančič E, Aničin A, Dovšak T, and Zidar N
- Abstract
NANOG is a stem cell transcription factor that is believed to play an important role in the development of oral squamous cell carcinoma (OSCC), but there is limited data regarding the role of long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) in the regulation of NANOG expression. We therefore analyzed expression of NANOG, NANOG-regulating miRNAs and lncRNAs in OSCC cancerogenesis, using oral biopsy samples from 66 patients including normal mucosa, dysplasia, and OSCC. Expression analysis of NANOG , miR-34a , miR-145 , RoR , SNHG1 , AB209630 , and TP53 was performed using qPCR and immunohistochemistry for NANOG protein detection. NANOG protein showed no staining in normal mucosa, very weak in low-grade dysplasia, and strong staining in high-grade dysplasia and OSCC. NANOG , miR-145 , RoR , and SNHG1 showed up-regulation, TP53 and miR-34a showed down-regulation, and AB209630 showed variable expression during cancerogenesis. NANOG mRNA was up-regulated early in cancerogenesis, before strong protein expression can be detected. NANOG was in correlation with miR-145 and RoR . Our results suggest that miRNAs and lncRNAs, particularly miR-145 and RoR , might be important post-transcription regulatory mechanisms of NANOG in OSCC cancerogenesis. Furthermore, NANOG protein detection has a diagnostic potential for oral high-grade dysplasia, distinguishing it from low-grade dysplasia and non-neoplastic reactive lesions., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Grubelnik, Boštjančič, Aničin, Dovšak and Zidar.)
- Published
- 2021
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37. Identification and Validation of New Cancer Stem Cell-Related Genes and Their Regulatory microRNAs in Colorectal Cancerogenesis.
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Urh K, Žlajpah M, Zidar N, and Boštjančič E
- Abstract
Significant progress has been made in the last decade in our understanding of the pathogenetic mechanisms of colorectal cancer (CRC). Cancer stem cells (CSC) have gained much attention and are now believed to play a crucial role in the pathogenesis of various cancers, including CRC. In the current study, we validated gene expression of four genes related to CSC, L1TD1 , SLITRK6 , ST6GALNAC1 and TCEA3 , identified in a previous bioinformatics analysis. Using bioinformatics, potential miRNA-target gene correlations were prioritized. In total, 70 formalin-fixed paraffin-embedded biopsy samples from 47 patients with adenoma, adenoma with early carcinoma and CRC without and with lymph node metastases were included. The expression of selected genes and microRNAs (miRNAs) was evaluated using quantitative PCR. Differential expression of all investigated genes and four of six prioritized miRNAs ( hsa-miR-199a-3p , hsa-miR-335-5p , hsa-miR-425-5p , hsa-miR-1225-3p , hsa-miR-1233-3p and hsa-miR-1303 ) was found in at least one group of CRC cancerogenesis. L1TD1 , SLITRK6 , miR-1233-3p and miR-1225-3p were correlated to the level of malignancy. A negative correlation between miR-199a-3p and its predicted target SLITRK6 was observed, showing potential for further experimental validation in CRC. Our results provide further evidence that CSC-related genes and their regulatory miRNAs are involved in CRC development and progression and suggest that some them, particularly miR-199a-3p and its SLITRK6 target gene, are promising for further validation in CRC.
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- 2021
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38. Expression of Extracellular Matrix-Related Genes and Their Regulatory microRNAs in Problematic Colorectal Polyps.
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Žlajpah M, Boštjančič E, Tepeš B, and Zidar N
- Abstract
Colorectal carcinoma usually evolves gradually, forming a spectrum of lesions, due to accumulation of genetic mutations and epigenetic alterations. Many early lesions are detected since the introduction of screening programs. The greatest challenge is to distinguish between adenomas with epithelial misplacement (AEM) and adenomas with early carcinoma (AEC), considering the diagnosis affects prognosis and treatment. We analyzed the expression of selected extracellular matrix (ECM)-related genes and proteins, and their regulatory microRNAs using RT-qPCR and immunohistochemistry in biopsies from 44 patients. Differences were observed in AEM in comparison to AEC for DCN , EPHA4 , FN1 , SPON2 , and SPP1 , reflecting inflammatory stromal reaction to traumatisation and misplacement of dysplastic glands in the submucosa in the former, and desmoplastic stromal reaction to true invasion of dysplastic glands in the submucosa in the latter. Expression of regulatory microRNAs hsa-miR-200c and hsa-miR-146a significantly negatively correlated with the expression of their regulated genes, while significant difference between AEM and AEC was observed only for hsa-miR-29c . The described expression patterns are too complex to be used in diagnostic work, but might contribute to better understanding ECM changes in colorectal carcinoma development, helping to find new markers in the future.
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- 2020
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39. Exploring the role of the complement system, endothelial injury, and microRNAs in thrombotic microangiopathy after kidney transplantation.
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Aleš Rigler A, Večerić-Haler Ž, Arnol M, Perše M, Boštjančič E, Pleško J, Simčič S, and Kojc N
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- Biopsy, Humans, Kidney, Kidney Transplantation adverse effects, MicroRNAs genetics, Thrombotic Microangiopathies genetics
- Abstract
Objective: We investigated whether the recipient's complement system function, kidney graft endothelial ultrastructural injury, and microRNA (miRNA) expression before transplantation may be associated with the risk of posttransplant de novo thrombotic microangiopathy (TMA)., Methods: Complement system function assessment, histological and ultrastructural examination of preimplantation and kidney graft biopsies, and microRNA assessment were performed on kidney transplant recipients (KTRs) with de novo TMA., Results: On the basis of the clinical course, histological findings, and miRNA patterns, the following two de novo TMA phenotypes were observed: a self-limiting disease that was localized to the kidney graft and a systemic disease that progressed to graft failure without timely treatment. Decreased alternative complement pathway activity and ultrastructural endothelial injury before transplantation were confirmed in all five KTRs and four of five KTRs, respectively, but they did not correlate with de novo TMA severity., Conclusions: Alternative complement pathway abnormalities in KTRs and endothelial ultrastructural injury on preimplantation biopsy might be associated with de novo posttransplant TMA, although they did not predict posttransplant TMA severity (localized vs. systemic). The specific miRNA expression patterns in preimplantation kidney graft biopsies demonstrated a borderline statistically significant difference and might provide more accurate information on posttransplant TMA severity.
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- 2020
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40. FUS-NFATC2 or EWSR1-NFATC2 Fusions Are Present in a Large Proportion of Simple Bone Cysts.
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Pižem J, Šekoranja D, Zupan A, Boštjančič E, Matjašič A, Mavčič B, Contreras JA, Gazič B, Martinčič D, Snoj Ž, Limpel Novak KA, and Salapura V
- Subjects
- Adolescent, Adult, Bone Cysts diagnostic imaging, Bone Cysts pathology, Bone Cysts, Aneurysmal genetics, Bone Cysts, Aneurysmal pathology, Child, Diagnosis, Differential, Female, Genetic Markers, Humans, In Situ Hybridization, Fluorescence, Male, Predictive Value of Tests, Recurrence, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, RNA, Bone Cysts genetics, Gene Fusion, NFATC Transcription Factors genetics, Oncogene Proteins, Fusion genetics, RNA-Binding Protein FUS genetics
- Abstract
A simple bone cyst (SBC) is a benign bone lesion of unknown etiology. It can be differentiated from an aneurysmal bone cyst (ABC) by radiologic and histopathologic features, as well as by the absence of fusions of the USP6 gene characteristic of an ABC. In an attempt to differentiate between ABC and SBC in a recurrent bone cyst, we performed targeted RNA sequencing and found an EWSR1-NFATC2 fusion and no fusion of the USP6 gene. We subsequently analyzed additional 10 cysts, consistent with SBCs after radiologic-pathologic correlation, for the presence of an NFATC2 gene fusion, by targeted RNA sequencing, reverse-transcription polymerase chain reaction (RT-PCR) and Sanger sequencing, and fluorescent in situ hybridization. Targeted RNA sequencing showed a FUS-NFATC2 fusion in 4 of 11 SBCs and an EWSR1-NFATC2 fusion in 2 of 11 SBCs. No fusion was identified in 3 SBCs and the analysis was not successful in 2 SBCs because of the low quantity or poor quality of isolated RNA. All the 6 fusions detected by targeted RNA sequencing were confirmed by RT-PCR and Sanger sequencing, and 5 of the 6 fusions by fluorescent in situ hybridization. An additional FUS-NFATC2 fusion was identified by RT-PCR, Sanger sequencing, and fluorescent in situ hybridization in 1 of the 3 cases negative for fusions by targeted RNA sequencing. At least a large subset of SBCs represents cystic neoplasms characterized by FUS-NFATC2 or EWSR1-NFATC2 fusions, which also define a group of distinct, rare "Ewing-like" sarcomas that predominantly arise in long bones. Our results provide additional evidence of the existence of benign lesions with FUS-NFATC2 or EWSR1-NFATC2 fusions. Although they can recur locally in a nondestructive manner, their clinical course and possible relation to sarcoma with EWSR1-NFATC2 or FUS-NFATC2 fusion remains to be elucidated.
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- 2020
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41. Uromodulin and microRNAs in Kidney Transplantation-Association with Kidney Graft Function.
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Borštnar Š, Večerić-Haler Ž, Boštjančič E, Pipan Tkalec Ž, Kovač D, Lindič J, and Kojc N
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- Adult, Aged, Allografts pathology, Creatinine blood, Female, Glomerular Filtration Rate, Graft Survival genetics, Humans, Kidney metabolism, Kidney pathology, Kidney Tubules pathology, Male, MicroRNAs blood, MicroRNAs classification, Middle Aged, Uromodulin blood, Biomarkers blood, Kidney Transplantation, MicroRNAs genetics, Uromodulin genetics
- Abstract
Uromodulin and microRNAs (miRNAs) have recently been investigated as potential biomarkers for kidney graft associated pathology and outcome, with a special focus on biomarkers indicating specific disease processes and kidney graft survival. The study's aim was to determine whether expression of serum uromodulin concentration and selected miRNAs might be related to renal function in kidney transplant recipients (KTRs). The uromodulin concentration and expression of six selected miRNAs ( miR-29c , miR-126 , miR-146a , miR-150 , miR-155 , and miR-223 ) were determined in the serum of 100 KTRs with stable graft function and chronic kidney disease of all five stages. Kidney graft function was estimated with routine parameters (creatinine, urea, cystatin C, and Chronic Kidney Disease Epidemiology Collaboration study equations) and precisely measured using chromium-51 labelled ethylenediaminetetraacetic-acid clearance. The selected miRNAs were shown to be independent of kidney graft function, indicating their potential as biomarkers of associated kidney graft disease processes. In contrast, the serum uromodulin level depended entirely on kidney graft function and thus reflected functioning tubules rather than any specific kidney graft injury. However, decreased concentrations of serum uromodulin can be observed in the early course of tubulointerstitial injury, thereby suggesting its useful role as an accurate, noninvasive biomarker of early (subclinical) kidney graft injury.
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- 2020
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42. Pigmented (melanotic) myoepithelial tumor of soft tissue with EWSR1-KLF17 fusion.
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Pižem J, Boštjančič E, Šekoranja D, Pleško J, and Živec K
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- Gene Rearrangement, Humans, Male, Middle Aged, Myoepithelioma genetics, Myoepithelioma metabolism, Prognosis, Soft Tissue Neoplasms genetics, Soft Tissue Neoplasms metabolism, Melanins metabolism, Myoepithelioma pathology, Oncogene Proteins, Fusion genetics, RNA-Binding Protein EWS genetics, Soft Tissue Neoplasms pathology, Transcription Factors genetics
- Abstract
Myoepithelial tumors of soft tissue are rare, morphologically and biologically heterogeneous tumors. EWSR1 fusion is found in about half of the cases, followed by PLAG1 and FUS fusions. EWSR1-KLF17 fusion has so far been reported in one benign myoepithelial tumor. Using next generation sequencing we identified another myoepithelial tumor of soft tissue with EWSR1-KLF17 fusion, located on the foot in a 55-year-old male. It was composed predominantly of spindle cells with multiple small areas of epithelioid and multinucleated cells in myxohyaline stroma and areas of melanin pigment in the cytoplasm of tumor cells. The pigmented tumor cells were positive for HMB45 and, ultrastructurally, melanosomes were identified in their cytoplasm. Melanin production has not been previously documented in myoepithelial tumors of soft tissue. Our case extends the spectrum of myoepithelial tumors of soft tissue and emphasizes the importance of molecular characterization of fusions, including determination of fusion partners in myoepithelial tumors and their mimics., Competing Interests: Declaration of Competing Interest The authors declare that they have no conflict of interest., (Copyright © 2020. Published by Elsevier Inc.)
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- 2020
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43. (Epi)genetic regulation of osteopontin in colorectal cancerogenesis.
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Žlajpah M, Boštjančič E, and Zidar N
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- Aged, Aged, 80 and over, DNA Copy Number Variations, DNA Methylation, Epigenesis, Genetic, Female, Humans, Male, Middle Aged, Promoter Regions, Genetic, Adenoma genetics, Colorectal Neoplasms genetics, Lymphatic Metastasis genetics, MicroRNAs, Osteopontin genetics
- Abstract
Aim: To identify (epi)genetic regulators of osteopontin (OPN, encoded by SPP1 gene) from normal colon mucosa to adenoma, adenoma with early carcinoma and advanced carcinoma. Patients & methods: Biopsy samples of 41 patients with different patohistologic diagnosis were used. Using qPCR, pyrosequencing and statistical analysis, we determined the expression level of osteopontin regulatory miRNAs, its copy number and methylation status. Results & conclusion: We showed that hsa-miR-146a-5p expression is inversely proportional to the expression level of SPP1 and that expression might be also controlled by copy number and methylation. These results suggest that not only expression of SPP1 but also its copy number, methylation status and expression of its regulators might be used as a potential biomarker of colorectal cancer.
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- 2020
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44. Expression of NANOG and Its Regulation in Oral Squamous Cell Carcinoma.
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Grubelnik G, Boštjančič E, Grošelj A, and Zidar N
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- Aged, Aged, 80 and over, Carcinoma, Squamous Cell pathology, DNA Copy Number Variations genetics, DNA Methylation genetics, Female, Humans, Kruppel-Like Factor 4, Lymphatic Metastasis pathology, MicroRNAs genetics, MicroRNAs metabolism, Middle Aged, Mouth Neoplasms pathology, Nanog Homeobox Protein metabolism, Neoplasm Proteins genetics, Neoplasm Proteins metabolism, Promoter Regions, Genetic genetics, RNA, Messenger genetics, RNA, Messenger metabolism, Carcinoma, Squamous Cell genetics, Gene Expression Regulation, Neoplastic, Mouth Neoplasms genetics, Nanog Homeobox Protein genetics
- Abstract
Background: Results of previous studies suggest that NANOG may be an important prognostic biomarker in oral squamous cell carcinoma (OSCC), but there are contradictory results regarding NANOG expression patterns on mRNA and protein levels, and the mechanisms of its regulation are poorly understood. Our aim was to analyze the expression and diagnostic significance of NANOG in OSCC, and the possible mechanisms of its regulation, i.e., protein regulators on mRNA level ( OCT4 , SOX2 , KLF4 , AGR2 , and NOTCH1 ), methylation status, copy number variation, and regulatory miRNAs, miR-145 , miR-335 , miR-150 , miR-34a , miR-128 , and miR-27a ., Methods: Our study included 120 patients with OSCC. Expression of NANOG protein and mRNA was analyzed using immunohistochemistry and qPCR. Expression of regulatory factors, miRNAs, and copy number variation was performed using qPCR. Methylation status of NANOG promoter was determined using PCR and Sanger sequencing., Results: We detected upregulation of NANOG and OCT4 and downregulation of NOTCH1 and AGR2 mRNA in OSCC with lymph node metastases compared to OSCC without lymph node metastases. We observed a strong positive correlation between mRNAs of NANOG and those of its protein regulators OCT4 , SOX2 , NOTCH1 , AGR2 , and KLF4 . The expression of NANOG was in positive correlation with the expression of miR-34a . There was also a correlation between T status of OSCC and the expression of miR-335 and miR-150 and a correlation of miR-150 with the N status of T2 OSCC. NANOG promoter methylation and copy number variation were only observed in a small proportion of samples., Conclusions: Our findings confirm the diagnostic significance of NANOG in OSCC and provide information on NANOG expression patterns on both mRNA and protein levels. They also suggest that protein regulators and microRNAs might play a crucial role, whereas methylation of its promoter and copy number variation probably have a minor role in the regulation of NANOG expression in OSCC., Competing Interests: The authors declare that they have no conflicts of interest., (Copyright © 2020 Gašper Grubelnik et al.)
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- 2020
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45. Pathology of Fibrosis in Crohn's Disease-Contribution to Understanding Its Pathogenesis.
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Zidar N, Langner C, Jerala M, Boštjančič E, Drobne D, and Tomažič A
- Abstract
Background: Despite significant progress in the research of fibrosis in various organs, fibrosis remains a poorly understood complication of Crohn's disease (CD). We analyzed pathologic features of fibrosis and inflammation in CD and compared them with the normal bowel, aiming to clarify whether fibrosis in CD pathogenetically resembles fibrosis in other organs. Methods: Resection specimens from 30 patients with CD were included. Normal bowel from resection specimens of colorectal carcinoma was used for comparison. Trichrome Masson staining, immunohistochemistry for α-smooth muscle actin, fibroblast activation protein, CD34 and erg, in situ hybridization for TGF-β1 and analysis of selected fibrosis-related microRNAs were performed. Results: In normal bowel, CD34-positive fibroblasts/pericytes were detected in the submucosa and subserosa, particularly around blood vessels. In CD, fibrosis prevailed in the submucosa and subserosa, together with proliferation of myofibroblasts and disappearance of CD34-positive fibroblasts/pericytes. TGF-β1 was present in the lamina propria in normal bowel and CD, and in deeper parts of the bowel wall in CD. MicroRNAs miR-29c, miR-155 miR-150 , and miR-155 , which have been demonstrated to contribute to fibrosis in various organs, showed significant deregulation in CD. Conclusions: Distribution of fibroblasts/pericytes in the submucosa and subserosa of normal bowel, their disappearance in fibrosis in CD, together with the appearance of myofibroblasts, suggest that fibroblasts/pericytes are the most likely source of myofibroblasts in CD. Furthemore, fibrosis-related microRNAs showed deregulation in fibrotic areas. Pathogenesis of fibrosis in CD is thus comparable to fibrosis in other organs, in which myofibroblasts are the key effector cells, and pericytes have emerged as the main origin of myofibroblasts. Fibrosis in CD should be regarded as a result of (over)response of the bowel wall to the presence of inflammation in deep structures of the bowel wall, presenting another example of a common pathogenetic pathway of fibrosis development., (Copyright © 2020 Zidar, Langner, Jerala, Boštjančič, Drobne and Tomažič.)
- Published
- 2020
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46. MDM2-positive papillary sarcomatoid renal cell carcinoma: a potential diagnostic pitfall.
- Author
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Jeruc J, Čugura T, Tomažič A, and Boštjančič E
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- Aged, Carcinoma, Renal Cell genetics, Carcinoma, Renal Cell pathology, Humans, Immunohistochemistry, Liposarcoma genetics, Liposarcoma pathology, Male, Proto-Oncogene Proteins c-mdm2 metabolism, Retroperitoneal Neoplasms genetics, Retroperitoneal Neoplasms pathology, Sarcoma genetics, Sarcoma pathology, Carcinoma, Renal Cell diagnosis, Liposarcoma diagnosis, Proto-Oncogene Proteins c-mdm2 genetics, Retroperitoneal Neoplasms diagnosis, Sarcoma diagnosis
- Abstract
Sarcomatoid renal cell carcinoma is a highly aggressive form of carcinoma, histologically showing both carcinomatous and mesenchymal component in different proportions. We present a case of advanced type 1 papillary sarcomatoid renal cell carcinoma infiltrating adjacent organs and showing positivity for MDM2 by immunohistochemistry and MDM2 amplification by fluorescence in situ hybridization. This finding, together with sarcomatoid morphology, poses a potential pitfall for diagnosis with dedifferentiated liposarcoma. MDM2 is known to be altered in various human sarcomas. Only recently, MDM2 alterations have been reported in carcinomas. The presented case illustrates the need of thorough sampling with clinic-pathological correlation before making a final diagnosis in sarcomatoid retroperitoneal tumours. Additionally, the potential clinical implications of MDM2 amplification in renal cell carcinoma are discussed.
- Published
- 2020
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47. SINGLE NUCLEOTIDE POLYMORPHISMS IN RETINAL DETACHMENT PATIENTS WITH AND WITHOUT PROLIFERATIVE VITREORETINOPATHY.
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Lumi X, Jelen MM, Zupan A, Boštjančič E, Ravnik-Glavač M, Hawlina M, and Glavač D
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Eye Proteins metabolism, Female, Genetic Association Studies, Genotype, Humans, Male, Middle Aged, Retinal Detachment etiology, Retinal Detachment metabolism, Retrospective Studies, Vitreoretinopathy, Proliferative genetics, Vitreoretinopathy, Proliferative metabolism, Young Adult, Eye Proteins genetics, Polymorphism, Single Nucleotide, RNA genetics, Retinal Detachment genetics, Vitreoretinopathy, Proliferative complications
- Abstract
Purpose: To investigate differences in genotype distributions of single nucleotide polymorphisms within genes, encoding inflammatory mediators, among patients with rhegmatogenous retinal detachment (RRD) and patients with proliferative vitreoretinopathy (PVR)., Methods: A genetic association study was performed on 191 Slovenian patients, divided into 2 groups: 113 RRD patients with PVR and 78 RRD patients without PVR. Genotype distributions were investigated within the following 13 single nucleotide polymorphisms: rs3760396 (CCL2), rs9990554 (FGF2), rs17561 (IL1A), rs2069763 (IL2), rs1800795 (IL6), rs1800871 (IL10), rs3008 (JAK3), rs2229094 (LTA), rs1042522 (TP53), rs7656613 (PDGFRA), rs7226855 (SMAD7), rs1800471 (TGFB1), and rs1800629 (TNF)., Results: Differences in genotype distributions between patients with RRD with or without PVR were detected in rs1800795 (IL6) (P = 0.04), rs1800871 (in the vicinity of the IL10) (P = 0.034), and rs1800471 (TGFB1) (P = 0.032). After adjustment none of the 13 analyzed single nucleotide polymorphisms showed statistically significant associations in single nucleotide polymorphism genotype distributions between patients with RRD with and without PVR., Conclusion: Further research is needed, particularly expanded multicentric population-based studies, to clarify the issue of genetic contribution to PVR from different genetic, clinical, and population-based aspects.
- Published
- 2020
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48. Returning to Work After Sick Leave - The Role of Work Demands and Resources, Self-Efficacy, and Social Support.
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Boštjančič E and Galič K
- Abstract
Returning to work after sick leave is a process that begins with the initial steps of functional recovery and results in full vocational capacity. Different personal and situational factors could influence an employee's well-being after returning. The following research was conducted in order to examine how occupational demands and resources, self-efficacy, and social engagement contribute to the return-to-work process. A total of 256 employees took part in the study, who were later divided into two groups: short- (less than 30 days), and long-term (more than 30 days) sick leave. We measured their self-efficacy at the workplace, recent job demands and resources, social engagement, and work satisfaction after returning to work after sick leave. The results showed that personal (gender, age, and self-efficacy), social (social engagement), and occupational (job demands and resources) factors are associated with the duration of sick leave. Participants who were on shorter sick leaves reported being more satisfied with their work after returning than those returning from long-term sick leave. The research presents important insights that could help employers better understand the needs of employees who are returning to work after sick leave., (Copyright © 2020 Boštjančič and Galič.)
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- 2020
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49. A novel PTPRZ1-ETV1 fusion in gliomas.
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Matjašič A, Zupan A, Boštjančič E, Pižem J, Popović M, and Kolenc D
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- Adult, Aged, Aged, 80 and over, Child, Female, Humans, Male, Middle Aged, Oncogene Fusion genetics, Oncogene Proteins, Fusion genetics, Brain Neoplasms genetics, DNA-Binding Proteins genetics, Glioma genetics, Receptor-Like Protein Tyrosine Phosphatases, Class 5 genetics, Transcription Factors genetics
- Abstract
The aggressive nature of malignant gliomas and their genetic and clinical heterogeneity present a major challenge in their diagnosis and treatment. Development of targeted therapy brought attention on detecting novel gene fusions, since they represent promising therapeutic targets (eg, TRK inhibitors in NTRK fusion-positive tumors). Using targeted next-generation sequencing, we prospectively analyzed 205 primary brain tumors and detected a novel PTPRZ1-ETV1 fusion transcript in 11 of 191 (5.8%) gliomas, including nine glioblastomas, one anaplastic oligodendroglioma and one pilocytic astrocytoma. PTPRZ1-ETV1 fusion was confirmed by RT-PCR followed by Sanger sequencing, and in-silico analysis predicted a potential driver role. The newly detected fusion consists of the PTPRZ1 promoter in frame with the highly conserved DNA-binding domain of ETV1 transcription factor. The ETV1 and PTPRZ1 genes are known oncogenes, involved in processes of tumor development. ETV1 is a member of the ETS family of transcription factors, already known oncogenic drivers in Ewing sarcoma, prostate cancer and gastrointestinal stromal tumors, but not in gliomas. Its overexpression contributes to tumor growth and more aggressive tumor behavior. PTPRZ1 is already considered to be a tumor growth promoting oncogene in gliomas. In 8%-16% of gliomas, PTPRZ1 is fused to the MET oncogene, resulting in a PTPRZ1-MET fusion, which is associated with poorer prognosis but is also a positive predictive biomarker for treatment with kinase inhibitors. In view of the oncogenic role that the two fusion partners, PTPRZ1 and ETV1, exhibit in other malignancies, PTPRZ1-ETV1 fusion might present a novel potential therapeutic target in gliomas. Although histopathological examination of PTPRZ1-ETV1 fusion-positive gliomas did not reveal any specific or unique pathological features, and the follow-up period was too short to assess prognostic value of the fusion, careful monitoring of patients and their response to therapy might provide additional insights into the prognostic and predictive value of this novel fusion., (© 2019 International Society of Neuropathology.)
- Published
- 2020
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50. NANOG expression in human development and cancerogenesis.
- Author
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Grubelnik G, Boštjančič E, Pavlič A, Kos M, and Zidar N
- Subjects
- Animals, Carcinogenesis genetics, Humans, Molecular Targeted Therapy, Nanog Homeobox Protein genetics, Neoplasms genetics, Organ Specificity, Carcinogenesis pathology, Embryonic Development genetics, Nanog Homeobox Protein metabolism
- Published
- 2020
- Full Text
- View/download PDF
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