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We study the problem of automatically repairing infinite-state software programs w.r.t. temporal hyperproperties. As a first step, we present a repair approach for the temporal logic HyperLTL based on symbolic execution, constraint generation, and syntax-guided synthesis of repair expression (SyGuS). To improve the repair quality, we introduce the notation of a transparent repair that aims to find a patch that is as close as possible to the original program. As a practical realization, we develop an iterative repair approach. Here, we search for a sequence of repairs that are closer and closer to the original program's behavior. We implement our method in a prototype and report on encouraging experimental results using off-the-shelf SyGuS solvers., Comment: CAV 2024

In distributed systems with processes that do not share a global clock, \emph{partial synchrony} is achieved by clock synchronization that guarantees bounded clock skew among all applications. Existing solutions for distributed runtime verification under partial synchrony against temporal logic specifications are exact but suffer from significant computational overhead. In this paper, we propose an \emph{approximate} distributed monitoring algorithm for Signal Temporal Logic (STL) that mitigates this issue by abstracting away potential interleaving behaviors. This conservative abstraction enables a significant speedup of the distributed monitors, albeit with a tradeoff in accuracy. We address this tradeoff with a methodology that combines our approximate monitor with its exact counterpart, resulting in enhanced efficiency without sacrificing precision. We evaluate our approach with multiple experiments, showcasing its efficacy in both real-world applications and synthetic examples., Comment: Full version of the paper to appear in RV 2024

Causality is the relationship where one event contributes to the production of another, with the cause being partly responsible for the effect and the effect partly dependent on the cause. In this paper, we propose a novel and effective method to formally reason about the causal effect of events in engineered systems, with application for finding the root-cause of safety violations in embedded and cyber-physical systems. We are motivated by the notion of actual causality by Halpern and Pearl, which focuses on the causal effect of particular events rather than type-level causality, which attempts to make general statements about scientific and natural phenomena. Our first contribution is formulating discovery of actual causality in computing systems modeled by transition systems as an SMT solving problem. Since datasets for causality analysis tend to be large, in order to tackle the scalability problem of automated formal reasoning, our second contribution is a novel technique based on abstraction-refinement that allows identifying for actual causes within smaller abstract causal models. We demonstrate the effectiveness of our approach (by several orders of magnitude) using three case studies to find the actual cause of violations of safety in (1) a neural network controller for a Mountain Car, (2) a controller for a Lunar Lander obtained by reinforcement learning, and (3) an MPC controller for an F-16 autopilot simulator.

We present the first decentralized algorithm for detecting predicates over continuous-time signals under partial synchrony. A distributed cyber-physical system (CPS) consists of a network of agents, each of which measures (or computes) a continuous-time signal. Examples include distributed industrial controllers connected over wireless networks and connected vehicles in traffic. The safety requirements of such CPS, expressed as logical predicates, must be monitored at runtime. This monitoring faces three challenges: first, every agent only knows its own signal, whereas the safety requirement is global and carries over multiple signals. Second, the agents' local clocks drift from each other, so they do not even agree on the time. Thus, it is not clear which signal values are actually synchronous to evaluate the safety predicate. Third, CPS signals are continuous-time so there are potentially uncountably many safety violations to be reported. In this paper, we present the first decentralized algorithm for detecting conjunctive predicates in this setup. Our algorithm returns all possible violations of the predicate, which is important for eliminating bugs from distributed systems regardless of actual clock drift. We prove that this detection algorithm is in the same complexity class as the detector for discrete systems. We implement our detector and validate it experimentally., Comment: 23 pages, 6 figures, accepted to conference Runtime Verification 2023

Probabilistic hyperproperties express probabilistic relations between different executions of systems with uncertain behavior. HyperPCTL allows to formalize such properties, where quantification over probabilistic schedulers resolves potential non-determinism. In this paper we propose an extension named AHyperPCTL to additionally introduce asynchronicity between the observed executions by quantifying over stutter-schedulers, which may randomly decide to delay scheduler decisions by idling. To our knowledge, this is the first asynchronous extension of a probabilistic branching-time hyperlogic. We show that AHyperPCTL can express interesting information-flow security policies, and propose a model checking algorithm for a decidable fragment., Comment: to be published in the Proceedings of QEST 2023

Industrial Control Systems (ICS) are often built from geographically distributed components and often use programmable logic controllers for localized processes. Since verification of such systems is challenging because of both time sensitivity of the system specifications and the inherent asynchrony in distributed components, developing runtime assurance that verifies not just the correctness of different components, but also generates aggregated statistics of the systems is of interest. In this paper, we first present a general technique for runtime monitoring of distributed applications whose behavior can be modeled as input/output {\em streams} with an internal computation module in the partially synchronous semantics, where an imperfect clock synchronization algorithm is assumed. Second, we propose a generalized stream-based decentralized runtime verification technique. We also rigorously evaluate our algorithm on extensive synthetic experiments and several ICS and aircraft SBS message datasets.

Many types of attacks on confidentiality stem from the nondeterministic nature of the environment that computer programs operate in (e.g., schedulers and asynchronous communication channels). In this paper, we focus on verification of confidentiality in nondeterministic environments by reasoning about asynchronous hyperproperties. First, we generalize the temporal logic A-HLTL to allow nested trajectory quantification, where a trajectory determines how different execution traces may advance and stutter. We propose a bounded model checking algorithm for A-HLTL based on QBF-solving for a fragment of the generalized A-HLTL and evaluate it by various case studies on concurrent programs, scheduling attacks, compiler optimization, speculative execution, and cache timing attacks. We also rigorously analyze the complexity of model checking for different fragments of A-HLTL., Comment: 34 pages

Bounded model checking (BMC) is an effective technique for hunting bugs by incrementally exploring the state space of a system. To reason about infinite traces through a finite structure and to ultimately obtain completeness, BMC incorporates loop conditions that revisit previously observed states. This paper focuses on developing loop conditions for BMC of HyperLTL- a temporal logic for hyperproperties that allows expressing important policies for security and consistency in concurrent systems, etc. Loop conditions for HyperLTL are more complicated than for LTL, as different traces may loop inconsistently in unrelated moments. Existing BMC approaches for HyperLTL only considered linear unrollings without any looping capability, which precludes both finding small infinite traces and obtaining a complete technique. We investigate loop conditions for HyperLTL BMC, where the HyperLTL formula can contain up to one quantifier alternation. We first present a general complete automata-based technique which is based on bounds of maximum unrollings. Then, we introduce alternative simulation-based algorithms that allow exploiting short loops effectively, generating SAT queries whose satisfiability guarantees the outcome of the original model checking problem. We also report empirical evaluation of the prototype implementation of our BMC techniques using Z3py., Comment: 20 pages

Objective: We develop a deep learning framework based on the pre-trained Bidirectional Encoder Representations from Transformers (BERT) model using unstructured clinical notes from electronic health records (EHRs) to predict the risk of disease progression from Mild Cognitive Impairment (MCI) to Alzheimer's Disease (AD). Materials and Methods: We identified 3657 patients diagnosed with MCI together with their progress notes from Northwestern Medicine Enterprise Data Warehouse (NMEDW) between 2000-2020. The progress notes no later than the first MCI diagnosis were used for the prediction. We first preprocessed the notes by deidentification, cleaning and splitting, and then pretrained a BERT model for AD (AD-BERT) based on the publicly available Bio+Clinical BERT on the preprocessed notes. The embeddings of all the sections of a patient's notes processed by AD-BERT were combined by MaxPooling to compute the probability of MCI-to-AD progression. For replication, we conducted a similar set of experiments on 2563 MCI patients identified at Weill Cornell Medicine (WCM) during the same timeframe. Results: Compared with the 7 baseline models, the AD-BERT model achieved the best performance on both datasets, with Area Under receiver operating characteristic Curve (AUC) of 0.8170 and F1 score of 0.4178 on NMEDW dataset and AUC of 0.8830 and F1 score of 0.6836 on WCM dataset. Conclusion: We developed a deep learning framework using BERT models which provide an effective solution for prediction of MCI-to-AD progression using clinical note analysis.

Transactions involving multiple blockchains are implemented by cross-chain protocols. These protocols are based on smart contracts, programs that run on blockchains, executed by a network of computers. Because smart contracts can automatically transfer ownership of cryptocurrencies, electronic securities, and other valuable assets among untrusting parties, verifying the runtime correctness of smart contracts is a problem of compelling practical interest. Such verification is challenging since smart contract execution is time-sensitive, and the clocks on different blockchains may not be perfectly synchronized. This paper describes a method for runtime monitoring of blockchain executions. First, we propose a generalized runtime verification technique for verifying partially synchronous distributed computations for the metric temporal logic (MTL) by exploiting bounded-skew clock synchronization. Second, we introduce a progression-based formula rewriting scheme for monitoring \MTL specifications which employ SMT solving techniques and report experimental results., Comment: 2022 IEEE 42nd International Conference on Distributed Computing Systems (ICDCS)

Formal languages are in the core of models of computation and their behavior. A rich family of models for many classes of languages have been widely studied. Hyperproperties lift conventional trace-based languages from a set of execution traces to a set of sets of executions. Hyperproperties have been shown to be a powerful formalism for expressing and reasoning about information-flow security policies and important properties of cyber-physical systems. Although there is an extensive body of work on formal-language representation of trace properties, we currently lack such a general characterization for hyperproperties. We introduce hyperlanguages over finite words and models for expressing them. Essentially, these models express multiple words by using assignments to quantified word variables. Relying on the standard models for regular languages, we propose hyperregular expressions and finite-word hyperautomata (NFH), for modeling the class of regular hyperlanguages. We demonstrate the ability of regular hyperlanguages to express hyperproperties for finite traces. We explore the closure properties and the complexity of the fundamental decision problems such as nonemptiness, universality, membership, and containment for various fragments of NFH., Comment: 28 pages

We present HyperQB, a push-button QBF-based bounded model checker for hyperproperties. HyperQB takes as input a NuSMV model and a formula expressed in the temporal logic HyperLTL. Our QBF-based technique allows HyperQB to seamlessly deal with quantifier alternations. Based on the selection of either bug hunting or synthesis, the instances of counterexamples (for negated formula) or witnesses (for synthesis of positive formulas) are returned. We report on successful and effective verification for a rich set of experiments on a variety of case studies, including information-flow security, concurrent data structures, path planning for robots, co-termination, deniability, intransitivity of non-interference, and secrecy-preserving refinement. We also rigorously compare and contrast HyperQB with existing tools for model checking hyperporperties.

Hyperproperties are properties of computational systems that require more than one trace to evaluate, e.g., many information-flow security and concurrency requirements. Where a trace property defines a set of traces, a hyperproperty defines a set of sets of traces. The temporal logics HyperLTL and HyperCTL* have been proposed to express hyperproperties. However, their semantics are synchronous in the sense that all traces proceed at the same speed and are evaluated at the same position. This precludes the use of these logics to analyze systems whose traces can proceed at different speeds and allow that different traces take stuttering steps independently. To solve this problem in this paper, we propose an asynchronous variant of HyperLTL. On the negative side, we show that the model-checking problem for this variant is undecidable. On the positive side, we identify a decidable fragment which covers a rich set of formulas with practical applications. We also propose two model-checking algorithms that reduce our problem to the HyperLTL model-checking problem in the synchronous semantics.

We study the repair problem for hyperproperties specified in the temporal logic HyperLTL. Hyperproperties are system properties that relate multiple computation traces. This class of properties includes information flow policies like noninterference and observational determinism. The repair problem is to find, for a given Kripke structure, a substructure that satisfies a given specification. We show that the repair problem is decidable for HyperLTL specifications and finite-state Kripke structures. We provide a detailed complexity analysis for different fragments of HyperLTL and different system types: tree-shaped, acyclic, and general Kripke structures., Comment: arXiv admin note: text overlap with arXiv:2101.07847

We study the runtime verification of hyperproperties, expressed in the temporal logic HyperLTL, as a means to inspect a system with respect to security polices. Runtime monitors for hyperproperties analyze trace logs that are organized by common prefixes in the form of a tree-shaped Kripke structure, or are organized both by common prefixes and by common suffixes in the form of an acyclic Kripke structure. Unlike runtime verification techniques for trace properties, where the monitor tracks the state of the specification but usually does not need to store traces, a monitor for hyperproperties repeatedly model checks the growing Kripke structure. This calls for a rigorous complexity analysis of the model checking problem over tree-shaped and acyclic Kripke structures. We show that for trees, the complexity in the size of the Kripke structure is L-complete independently of the number of quantifier alternations in the HyperLTL formula. For acyclic Kripke structures, the complexity is PSPACE-complete (in the level of the polynomial hierarchy that corresponds to the number of quantifier alternations). The combined complexity in the size of the Kripke structure and the length of the HyperLTL formula is PSPACE-complete for both trees and acyclic Kripke structures, and is as low as NC for the relevant case of trees and alternation-free HyperLTL formulas. Thus, the size and shape of both the Kripke structure and the formula have significant impact on the complexity of the model checking problem.

We investigate the problem of controller synthesis for hyperproperties specified in the temporal logic HyperLTL. Hyperproperties are system properties that relate multiple execution traces. Hyperproperties can elegantly express information-flow policies like noninterference and observational determinism. The controller synthesis problem is to automatically design a controller for a plant that ensures satisfaction of a given specification in the presence of the environment or adversarial actions. We show that the controller synthesis problem is decidable for HyperLTL specifications and finite-state plants. We provide a rigorous complexity analysis for different fragments of HyperLTL and different system types: tree-shaped, acyclic, and general graphs., Comment: arXiv admin note: text overlap with arXiv:2101.08257

Hyperproperties are properties of systems that relate multiple computation traces, including security and concurrency properties. This paper introduces a bounded model checking (BMC) algorithm for hyperproperties expressed in HyperLTL, which - to the best of our knowledge - is the first such algorithm. Just as the classic BMC technique for LTL primarily aims at finding bugs, our approach also targets identifying counterexamples. BMC for LTL is reduced to SAT solving, because LTL describes a property via inspecting individual traces. HyperLTL allows explicit and simultaneous quantification over traces and describes properties that involves multiple traces and, hence, our BMC approach naturally reduces to QBF solving. We report on successful and efficient model checking, implemented in a tool called HyperQube, of a rich set of experiments on a variety of case studies, including security, concurrent data structures, path planning for robots, and testing.

We study the problem of formalizing and checking probabilistic hyperproperties for models that allow nondeterminism in actions. We extend the temporal logic \HyperPCTL, which has been previously introduced for discrete-time Markov chains, to enable the specification of hyperproperties also for Markov decision processes. We generalize HyperPCTL by allowing explicit and simultaneous quantification over schedulers and probabilistic computation trees and show that it can express important quantitative requirements in security and privacy. We show that HyperPCTL model checking over MDPs is in general undecidable for quantification over probabilistic schedulers with memory, but restricting the domain to memoryless non-probabilistic schedulers turns the model checking problem decidable. Subsequently, we propose an SMT-based encoding for model checking this language and evaluate its performance.

Hyperproperties lift conventional trace properties from a set of execution traces to a set of sets of execution traces. Hyperproperties have been shown to be a powerful formalism for expressing and reasoning about information-flow security policies and important properties of cyber-physical systems such as sensitivity and robustness, as well as consistency conditions in distributed computing such as linearizability. Although there is an extensive body of work on automata-based representation of trace properties, we currently lack such characterization for hyperproperties. We introduce hyperautomata for em hyperlanguages, which are languages over sets of words. Essentially, hyperautomata allow running multiple quantified words over an automaton. We propose a specific type of hyperautomata called nondeterministic finite hyperautomata (NFH), which accept regular hyperlanguages. We demonstrate the ability of regular hyperlanguages to express hyperproperties for finite traces. We then explore the fundamental properties of NFH and show their closure under the Boolean operations. We show that while nonemptiness is undecidable in general, it is decidable for several fragments of NFH. We further show the decidability of the membership problem for finite sets and regular languages for NFH, as well as the containment problem for several fragments of NFH. Finally, we introduce learning algorithms based on Angluin's L-star algorithm for the fragments NFH in which the quantification is either strictly universal or strictly existential., Comment: 12 pages of main paper and another 10 pages appendix

Many important system properties, particularly in security and privacy, cannot be verified statically. Therefore, runtime verification is an appealing alternative. Logics for hyperproperties, such as HyperLTL, support a rich set of such properties. We first show that black-box monitoring of HyperLTL is in general unfeasible, and suggest a gray-box approach. Gray-box monitoring implies performing analysis of the system at run-time, which brings new limitations to monitorabiliy (the feasibility of solving the monitoring problem). Thus, as another contribution of this paper we refine the classic notions of monitorability, both for trace properties and hyperproperties, taking into account the computability of the monitor. We then apply our approach to monitor a privacy hyperproperty called distributed data minimality, expressed as a HyperLTL property, by using an SMT-based static verifier at runtime., Comment: This is an extended version of a paper presented at the 23rd International Symposium on Formal Methods (FM '19). This version contains full proofs, a description of the proof-of-concept monitor for DDM, and experimental results that were not included in the original publication

Many important properties of cyber-physical systems (CPS) are defined upon the relationship between multiple executions simultaneously in continuous time. Examples include probabilistic fairness and sensitivity to modeling errors (i.e., parameters changes) for real-valued signals. These requirements can only be specified by hyperproperties. In this work, we focus on verifying probabilistic hyperproperties for CPS. To cover a wide range of modeling formalisms, we first propose a general model of probabilistic uncertain systems (PUSs) that unify commonly studied CPS models such as continuous-time Markov chains (CTMCs) and probabilistically parametrized Hybrid I/O Automata. To formally specify hyperproperties, we propose a new temporal logic, hyper probabilistic signal temporal logic (HyperPSTL) that serves as a hyper and probabilistic version of the conventional signal temporal logic (STL). Considering complexity of real-world systems that can be captured as PUSs, we adopt a statistical model checking (SMC) approach for their verification. We develop a new SMC technique based on the direct computation of the significance levels of statistical assertions for HyperPSTL specifications, which requires no a priori knowledge on the indifference margin. Then, we introduce SMC algorithms for HyperPSTL specifications on the joint probabilistic distribution of multiple paths, as well as specifications with nested probabilistic operators quantifying different paths, which cannot be handled by existing SMC algorithms. Finally, we show the effectiveness of our SMC algorithms on CPS benchmarks with varying levels of complexity, including the Toyota Powertrain Control~System.

Hyperproperties have shown to be a powerful tool for expressing and reasoning about information-flow security policies. In this paper, we investigate the problem of statistical model checking (SMC) for hyperproperties. Unlike exhaustive model checking, SMC works based on drawing samples from the system at hand and evaluate the specification with statistical confidence. The main benefit of applying SMC over exhaustive techniques is its efficiency and scalability. To reason about probabilistic hyperproperties, we first propose the temporal logic HyperPCLT* that extends PCTL* and HyperPCTL. We show that HyperPCLT* can express important probabilistic information-flow security policies that cannot be expressed with HyperPCTL. Then, we introduce SMC algorithms for verifying HyperPCLT* formulas on discrete-time Markov chains, based on sequential probability ratio tests (SPRT) with a new notion of multi-dimensional indifference region. Our SMC algorithms can handle both non-nested and nested probability operators for any desired significance level. To show the effectiveness of our technique, we evaluate our SMC algorithms on four case studies focused on information security: timing side-channel vulnerability in encryption, probabilistic anonymity in dining cryptographers, probabilistic noninterference of parallel programs, and the performance of a randomized cache replacement policy that acts as a countermeasure against cache flush attacks.