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1. Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

2. Pathogen-sugar interactions revealed by universal saturation transfer analysis

3. An enhanced-sampling MD-based protocol for molecular docking

5. Large expert-curated database for benchmarking document similarity detection in biomedical literature search

6. Combination of Ambiguous and Unambiguous Data in the Restraint-driven Docking of Flexible Peptides with HADDOCK: The Binding of the Spider Toxin PcTx1 to the Acid Sensing Ion Channel (ASIC) 1a.

7. ZADDOCK: incorporating ab initio search into HADDOCK

8. Kinetics and thermodynamics of type VIII beta-turn formation: A CD, NMR, and microsecond explicit molecular dynamics study of the GDNP tetrapeptide

9. The α-to-β Conformational Transition of Alzheimer’s Aβ-(1–42) Peptide in Aqueous Media is Reversible: A Step by Step Conformational Analysis Suggests the Location of β Conformation Seeding: A step by step conformational analysis suggests the location of beta conformation seeding

10. Defining the limits of homology modeling in information-driven protein docking

11. Hydration dynamics of the collagen triple helix by NMR

12. ZADDOCK: incorporating ab initio search into HADDOCK

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16. BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures

17. Describing partially unfolded states of proteins from sparse NMR Ddata

18. Data-driven docking: HADDOCK's adventures in CAPRI

19. Describing partially unfolded states of proteins from sparse NMR Ddata

20. BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures

21. Data-driven docking: HADDOCK's adventures in CAPRI

22. Hydration dynamics of the collagen triple helix by NMR

23. Large expert-curated database for benchmarking document similarity detection in biomedical literature search

24. The α-to-β Conformational Transition of Alzheimer's Aβ-(1-42) Peptide in Aqueous Media is Reversible: A Step by Step Conformational Analysis Suggests the Location of β Conformation Seeding

25. Toward the Prediction of Binding Events in Very Flexible, Allosteric, Multidomain Proteins.

26. Integrative Modeling in the Age of Machine Learning: A Summary of HADDOCK Strategies in CAPRI Rounds 47-55.

27. Predicting binding events in very flexible, allosteric, multi-domain proteins.

28. The HADDOCK2.4 web server for integrative modeling of biomolecular complexes.

29. Modeling Protein-Glycan Interactions with HADDOCK.

30. Accelerating protein-protein interaction screens with reduced AlphaFold-Multimer sampling.

31. Towards the accurate modelling of antibody-antigen complexes from sequence using machine learning and information-driven docking.

32. CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes.

33. ARCTIC-3D: automatic retrieval and clustering of interfaces in complexes from 3D structural information.

34. DeepRank-GNN-esm: a graph neural network for scoring protein-protein models using protein language model.

35. Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.

36. Improving the quality of co-evolution intermolecular contact prediction with DisVis.

37. An antibiotic from an uncultured bacterium binds to an immutable target.

38. Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.

39. MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein-Protein Docking Conformations.

40. Information-Driven Antibody-Antigen Modelling with HADDOCK.

41. DeepRank-GNN: a graph neural network framework to learn patterns in protein-protein interfaces.

42. PPARγ lipodystrophy mutants reveal intermolecular interactions required for enhancer activation.

43. Teixobactin kills bacteria by a two-pronged attack on the cell envelope.

44. Cyclization and Docking Protocol for Cyclic Peptide-Protein Modeling Using HADDOCK2.4.

45. Interface refinement of low- to medium-resolution Cryo-EM complexes using HADDOCK2.4.

46. Molecular Insights Into Binding and Activation of the Human KCNQ2 Channel by Retigabine.

47. DeepRank: a deep learning framework for data mining 3D protein-protein interfaces.

48. Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.

49. Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions.

50. Information-driven modeling of biomolecular complexes.

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