32 results on '"Bosso M"'
Search Results
2. Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness
- Author
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Obermeyer, F, Jankowiak, M, Barkas, N, Schaffner, SF, Pyle, JD, Yurkovetskiy, L, Bosso, M, Park, DJ, Babadi, M, MacInnis, BL, Luban, J, Sabeti, PC, Lemieux, JE, Obermeyer, F, Jankowiak, M, Barkas, N, Schaffner, SF, Pyle, JD, Yurkovetskiy, L, Bosso, M, Park, DJ, Babadi, M, MacInnis, BL, Luban, J, Sabeti, PC, and Lemieux, JE
- Abstract
Repeated emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants with increased fitness underscores the value of rapid detection and characterization of new lineages. We have developed PyR0, a hierarchical Bayesian multinomial logistic regression model that infers relative prevalence of all viral lineages across geographic regions, detects lineages increasing in prevalence, and identifies mutations relevant to fitness. Applying PyR0 to all publicly available SARS-CoV-2 genomes, we identify numerous substitutions that increase fitness, including previously identified spike mutations and many nonspike mutations within the nucleocapsid and nonstructural proteins. PyR0 forecasts growth of new lineages from their mutational profile, ranks the fitness of lineages as new sequences become available, and prioritizes mutations of biological and public health concern for functional characterization.
- Published
- 2022
3. Towards a marine strategy for the deep Mediterranean Sea: Analysis of current ecological status
- Author
-
Danovaro, R., Fanelli, E., Canals, M., Ciuffardi, T., Fabri, Marie-claire, Taviani, M., Argyrou, M., Azzurro, E., Bianchelli, S., Cantafaro, A., Carugati, L., Corinaldesi, C., De Haan, W.p., Dell’anno, A., Evans, J., Foglini, F., Galil, B., Gianni, M., Goren, M., Greco, S., Grimalt, J., Güell-bujons, Q., Jadaud, Angelique, Knittweis, L., Lopez, J.l., Sanchez-vidal, A., Schembri, P.j., Snelgrove, P., Vaz, Sandrine, Angeletti, L., Barsanti, M., Borg, J.a., Bosso, M., Brind'Amour, Anik, Castellan, G., Conte, F., Delbono, I., Galgani, Francois, Morgana, G., Prato, S., Schirone, A., Soldevila, E., Danovaro, R., Fanelli, E., Canals, M., Ciuffardi, T., Fabri, Marie-claire, Taviani, M., Argyrou, M., Azzurro, E., Bianchelli, S., Cantafaro, A., Carugati, L., Corinaldesi, C., De Haan, W.p., Dell’anno, A., Evans, J., Foglini, F., Galil, B., Gianni, M., Goren, M., Greco, S., Grimalt, J., Güell-bujons, Q., Jadaud, Angelique, Knittweis, L., Lopez, J.l., Sanchez-vidal, A., Schembri, P.j., Snelgrove, P., Vaz, Sandrine, Angeletti, L., Barsanti, M., Borg, J.a., Bosso, M., Brind'Amour, Anik, Castellan, G., Conte, F., Delbono, I., Galgani, Francois, Morgana, G., Prato, S., Schirone, A., and Soldevila, E.
- Abstract
The Marine Strategy Framework Directive (MSFD), introduced in June 2008, was adopted to achieve a Good Environmental Status (GES) in the EU's marine waters and to protect resources of socio-economic interest. The MSFD exerts to the marine area over which a Member State exercises jurisdictional rights in accordance with the United Nations Convention on the Law of the Sea (UNCLOS), including the deep-sea waters, seafloor and sub-seafloor of the Exclusive Economic Zones (EEZ). However, currently the MSFD focuses on coastal habitats and the shallow-water seafloor to the detriment of the deeper habitats. Despite the huge dimension of the deep sea (below 200 m of depth) covering more than 65% of the Earth's surface and including >95% of the global biosphere, the relevance of the dark portion of the seas and oceans is still almost completely neglected. Given the important bi-directional links between shallow and deep ecosystems, there is a clear need for extending the implementation of the MSFD into the deep sea, to define a sound ecosystem-based approach for the management and protection of deep-sea ecosystems and attain GES. We assembled data on drivers, anthropogenic pressures and impacts concerning the MSFD descriptors pertaining to the Mediterranean deep sea. We list deep-sea monitoring activities and the main sources providing benchmark conditions, and discuss knowledge and geographic coverage gaps. MSFD descriptors apply to the deep sea as to coastal waters, and ought to be monitored contemporaneously. We provide recommendations for guidelines for future deep-sea monitoring in the Mediterranean Sea.
- Published
- 2020
- Full Text
- View/download PDF
4. Towards a marine strategy for the deep Mediterranean Sea: Analysis of current ecological status
- Author
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Danovaro, R., primary, Fanelli, E., additional, Canals, M., additional, Ciuffardi, T., additional, Fabri, M.-C., additional, Taviani, M., additional, Argyrou, M., additional, Azzurro, E., additional, Bianchelli, S., additional, Cantafaro, A., additional, Carugati, L., additional, Corinaldesi, C., additional, de Haan, W.P., additional, Dell’Anno, A., additional, Evans, J., additional, Foglini, F., additional, Galil, B., additional, Gianni, M., additional, Goren, M., additional, Greco, S., additional, Grimalt, J., additional, Güell-Bujons, Q., additional, Jadaud, A., additional, Knittweis, L., additional, Lopez, J.L., additional, Sanchez-Vidal, A., additional, Schembri, P.J., additional, Snelgrove, P., additional, Vaz, S., additional, Angeletti, L., additional, Barsanti, M., additional, Borg, J.A., additional, Bosso, M., additional, Brind'Amour, A., additional, Castellan, G., additional, Conte, F., additional, Delbono, I., additional, Galgani, F., additional, Morgana, G., additional, Prato, S., additional, Schirone, A., additional, and Soldevila, E., additional
- Published
- 2020
- Full Text
- View/download PDF
5. Transplantation of the liver from a HBcAb positive donor into a HCV-RNA positive recipient adversely affects graft survival and worsens the course of HCV recurrence
- Author
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Tandoi, Francesco, Romagnoli, Renato, Catalano, Giorgia, Gonella, Federica, Bosso, M. C., Bertolotti, Giovanni, Saffioti, MARIA CRISTINA, and Salizzoni, Mauro
- Subjects
HBcAb positive donor ,HCV recipient ,liver transplantation - Published
- 2011
6. Pyruvic acid intermediate product in acetate oxidation by yeast
- Author
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Bolcato, V., Scevola, M. E., and Bosso, M.
- Published
- 1951
- Full Text
- View/download PDF
7. Effects of subclinical bovine Paratubercolosis on in-vitro polymorphonuclear neutrophil migration
- Author
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Dotta, Utillio, Guglielmino, Roberta, Cagnasso, Aurelio, D'Angelo, Antonio, Prato, S., and Bosso, M. .
- Published
- 1999
8. Analisi della densità e dei rapporti distanziali in boschi di castagno (Castanea sativa Miller) governati a ceduo
- Author
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Nosenzo, A., Pividori, Mario, and Bosso, M.
- Subjects
rapporti distanziali ,ceduo di castagno - Published
- 1996
9. Effects of Subclinical Bovine Paratuberculosis onIn-vitro Polymorphonuclear Neutrophil Migration
- Author
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Dotta, U, primary, Guglielmino, R, additional, Cagnasso, A, additional, D»Angelo, A, additional, Prato, S, additional, and Bosso, M, additional
- Published
- 1999
- Full Text
- View/download PDF
10. Towards a marine strategy for the deep Mediterranean Sea: Analysis of current ecological status
- Author
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Marco Taviani, Silvia Bianchelli, Antonio Dell'Anno, Silvestro Greco, Tiziana Ciuffardi, Marie-Claire Fabri, Ivana Delbono, Matthew Gianni, J. L. Lopez, Roberto Danovaro, Anna Sanchez-Vidal, François Galgani, Lorenzo Angeletti, Emma Soldevila, M. Bosso, Patrick J. Schembri, Laura Carugati, Antonio Schirone, Leyla Knittweis, Joan O. Grimalt, Menachem Goren, F. Conte, Cinzia Corinaldesi, Ernesto Azzurro, W. P. de Haan, Paul V. R. Snelgrove, Q. Guell-Bujons, Joseph A. Borg, Julian Evans, Anik Brind'Amour, Angélique Jadaud, A. Cantafaro, S. Prato, Marina Argyrou, Bella S. Galil, Mattia Barsanti, Federica Foglini, G. Morgana, Sandrine Vaz, Miquel Canals, Emanuela Fanelli, Giorgio Castellan, Danovaro R., Fanelli E., Canals M., Ciuffardi T., Fabri M.-C., Taviani M., Argyrou M., Azzurro E., Bianchelli S., Cantafaro A., Carugati L., Corinaldesi C., de Haan W.P., Dell'Anno A., Evans J., Foglini F., Galil B., Gianni M., Goren M., Greco S., Grimalt J., Guell-Bujons Q., Jadaud A., Knittweis L., Lopez J.L., Sanchez-Vidal A., Schembri P.J., Snelgrove P., Vaz S., Angeletti L., Barsanti M., Borg J.A., Bosso M., Brind'Amour A., Castellan G., Conte F., Delbono I., Galgani F., Morgana G., Prato S., Schirone A., Soldevila E., MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Grimalt, Joan O., Danovaro, R., Fanelli, E., Canals, M., Ciuffardi, T., Fabri, M. -C., Taviani, M., Argyrou, M., Azzurro, E., Bianchelli, S., Cantafaro, A., Carugati, L., Corinaldesi, C., de Haan, W. P., Dell'Anno, A., Evans, J., Foglini, F., Galil, B., Gianni, M., Goren, M., Greco, S., Grimalt, J., Guell-Bujons, Q., Jadaud, A., Knittweis, L., Lopez, J. L., Sanchez-Vidal, A., Schembri, P. J., Snelgrove, P., Vaz, S., Angeletti, L., Barsanti, M., Borg, J. A., Bosso, M., Brind'Amour, A., Castellan, G., Conte, F., Delbono, I., Galgani, F., Morgana, G., Prato, S., Schirone, A., Soldevila, E., and Grimalt, Joan O. [0000-0002-7391-5768]
- Subjects
0106 biological sciences ,Economics and Econometrics ,Good Environmental Status ,[SDE.MCG]Environmental Sciences/Global Changes ,Deep-sea ecosystems ,Management, Monitoring, Policy and Law ,Aquatic Science ,01 natural sciences ,Deep sea ,Marine Strategy Framework Directive ,Mediterranean sea ,United Nations Convention on the Law of the Sea ,14. Life underwater ,Marine strategy framework directive ,ComputingMilieux_MISCELLANEOUS ,General Environmental Science ,Mediterranean basin ,business.industry ,Deep-sea ecosystem ,010604 marine biology & hydrobiology ,Environmental resource management ,Biosphere ,04 agricultural and veterinary sciences ,Exclusive economic zone ,Habitat ,040102 fisheries ,0401 agriculture, forestry, and fisheries ,Environmental science ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,business ,Law - Abstract
The Marine Strategy Framework Directive (MSFD), introduced in June 2008, was adopted to achieve a Good Environmental Status (GES) in the EU's marine waters and to protect resources of socio-economic interest. The MSFD exerts to the marine area over which a Member State exercises jurisdictional rights in accordance with the United Nations Convention on the Law of the Sea (UNCLOS), including the deep-sea waters, seafloor and sub-seafloor of the Exclusive Economic Zones (EEZ). However, currently the MSFD focuses on coastal habitats and the shallow-water seafloor to the detriment of the deeper habitats. Despite the huge dimension of the deep sea (below 200 m of depth) covering more than 65% of the Earth's surface and including >95% of the global biosphere, the relevance of the dark portion of the seas and oceans is still almost completely neglected. Given the important bi-directional links between shallow and deep ecosystems, there is a clear need for extending the implementation of the MSFD into the deep sea, to define a sound ecosystem-based approach for the management and protection of deep-sea ecosystems and attain GES. We assembled data on drivers, anthropogenic pressures and impacts concerning the MSFD descriptors pertaining to the Mediterranean deep sea. We list deep-sea monitoring activities and the main sources providing benchmark conditions, and discuss knowledge and geographic coverage gaps. MSFD descriptors apply to the deep sea as to coastal waters, and ought to be monitored contemporaneously. We provide recommendations for guidelines for future deep-sea monitoring in the Mediterranean Sea., This study has been supported by the DG ENV project IDEM (Implementation of the MSFD to the Deep Mediterranean Sea; contract EU No 11.0661/2017/750680/SUB/EN V.C2). MC and AS-V from University of Barcelona acknowledge support from the Spanish government through Red BAMAR (ref.: CGL2016-81854-REDT), a network on marine litter, and RTD projects NUREIEV (ref. CTM2013-44598-R) and NUREIEVA (ref. CTM2016-75953-C2-1-R) on far-field and near-field impacts of the Portman Bay, SE Spain, coastal submarine mine tailings disposal site. Generalitat de Catalunya autonomous government funding to CRG Marine Geosciences (ref. 2017 SGR 315) within its support scheme to excellence research groups is equally acknowledged.
- Published
- 2020
11. Cosa chiede la biblioteca all’architettura? Riflessioni sull’architettura delle biblioteche
- Author
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FAILLA, Luigi, Bergamaschi, M, Abagnato, F, Benetti, Bergamaschi, M, Bosso, M, Certain, H, Cognini, C, Conti, L, Dognini, G, Failla, L, Fulceri, I, Obiarinze, E, Pancani, G, Raptis, G, and Rollet, C
- Subjects
Architecture, library, city, urban space, public space, third place ,Architecture, bibliothèque, ville, espace urbain, espace public, troisième lieu ,Architettura, bibioteca, città, spazio urbano, spazio pubblico, terzo luogo ,Settore ICAR/14 - Composizione Architettonica E Urbana - Abstract
Cosa chiede la biblioteca all’architettura? La risposta non è immediata come quella delle aspirazioni del mattone di Louis Kahn, che rimandano ad un codice costruttivo ed espressivo consolidatosi nella storia e nell’uso, ormai distante dalle pratiche tecnologiche dell’architettura moderna. Quando parliamo di biblioteche, affrontiamo indirettamente la questione del rapporto tra le abitudini comportamentali dell’uomo all’interno dello spazio pubblico: esaminiamo in sostanza il rapporto tra l’uomo e la città. L’evoluzione dei luoghi collettivi è il filo conduttore attraverso il quale è possibile descrivere la storia degli insediamenti urbani. Da luoghi principalmente di massa, essi tendono oggi a essere sempre più legati a delle fasce d’età, a degli interessi ben precisi, al livello di reddito e soprattutto al commercio, tanto da portare Rem Koolhaas a dichiarare che «lo shopping è con tutta probabilità l’ultima forma restante di attività pubblica». Segni, questi, di una frammentazione urbana che si sviluppa parallelamente e in maniera non disgiunta, dal dilagare dell’individualismo e della settorializzazione della nostra vita quotidiana: vi è l’ambito del lavoro, dello studio, della vita familiare, ognuno con proprie regole comportamentali, ritmi, abitudini ed esigenze spaziali. Il vivere contemporaneo ci impone di interrogarci su quanti luoghi della città possano oggi realmente essere considerati intergenerazionali e multiuso e quanti, invece, non favoriscano piuttosto il dilagare delle sensazioni di disagio nei confronti della vita nelle nostre metropoli. Disagio che investe il nostro rapporto con le nuove forme dell’abitare la città contemporanea divenendo, di fatto, un palese spaesamento urbano e sociale; l’uomo moderno perde ogni capacità di orientamento e non riconosce più il valore identitario dei luoghi collettivi urbani. Costretto all’isolamento e ai rapporti cibernetici, egli assiste inerme (almeno in Italia) alla sparizione progressiva dei luoghi pubblici capaci di ridurre i conflitti sociali. Esistono, tuttavia, degli spazi pubblici i cui gradi di libertà consentono ancora di poter assolvere questa funzione unificante. È il caso delle biblioteche che, nella loro concezione contemporanea, consentono di ridurre i conflitti tra le diverse categorie di pubblico grazie ad un’offerta molteplice capace di raggruppare età e interessi diversi.
- Published
- 2015
12. [Clinical-demographic characteristics of tracheostomized patients with chronic obstructive pulmonary disease]
- Author
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Carnero Echegaray J, Larocca F, Bellon P, and Bosso M
- Subjects
- Humans, Male, Female, Cross-Sectional Studies, Retrospective Studies, Aged, Argentina, Middle Aged, Aged, 80 and over, Intensive Care Units, Pulmonary Disease, Chronic Obstructive, Tracheostomy statistics & numerical data, Respiration, Artificial
- Abstract
Tracheostomy (TQT) has emerged as a valuable alternative for patients with orotracheal intubation, especially those under prolonged mechanical ventilation (VMP), as in the case of chronic obstructive pulmonary disease (COPD). This population presents additional challenges, and the available information regarding their progression in specialized centers is limited in Argentina.A descriptive, retrospective, and cross-sectional study was conducted at Santa Catalina Neurorehabilitation Clinic between August 2015 and December 2018. Patients with COPD referred to the Intensive Care Unit (ICU), tracheostomized, and subsequently referred to the Center for Ventilation Disconnection and Rehabilitation (CDVMR) were included. Cases with missing data or derived from other CDVMRs were excluded. Clinical records and interviews were employed to collect demographic and progression data.Out of the 27 COPD patients included (4.9% of 555), the majority were males (63%) with an average age of 68.1 years. Most were admitted with AVMi, and 11 (45.8%) were successfully disconnected, while 11 (40.7%) were decannulated. Survival and home discharge were more frequent in decannulated patients (81.8% were discharged) compared to non-decannulated ones (50% deceased, and none were discharged).COPD patients undergoing TQT and VMP, who succeed in being decannulated, seem to have better prospects for survival and home discharge compared to those who do not have the cannula removed. There is a suggestion for the need for additional analytical studies to confirm these findings and improve the understanding of this specific population., (Universidad Nacional de Córdoba)
- Published
- 2024
- Full Text
- View/download PDF
13. A Variety of Mouse PYHIN Proteins Restrict Murine and Human Retroviruses.
- Author
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Erdemci-Evin S, Bosso M, Krchlikova V, Bayer W, Regensburger K, Mayer M, Dittmer U, Sauter D, Kmiec D, and Kirchhoff F
- Subjects
- Animals, Mice, Humans, Nuclear Proteins genetics, Nuclear Proteins metabolism, Nuclear Proteins immunology, Virus Replication, Cell Line, Retroviridae Infections immunology, Retroviridae Infections virology, HIV-1 immunology, HIV-1 genetics, Leukemia Virus, Murine genetics, Leukemia Virus, Murine immunology, Phosphoproteins
- Abstract
PYHIN proteins are only found in mammals and play key roles in the defense against bacterial and viral pathogens. The corresponding gene locus shows variable deletion and expansion ranging from 0 genes in bats, over 1 in cows, and 4 in humans to a maximum of 13 in mice. While initially thought to act as cytosolic immune sensors that recognize foreign DNA, increasing evidence suggests that PYHIN proteins also inhibit viral pathogens by more direct mechanisms. Here, we examined the ability of all 13 murine PYHIN proteins to inhibit HIV-1 and murine leukemia virus (MLV). We show that overexpression of p203, p204, p205, p208, p209, p210, p211, and p212 strongly inhibits production of infectious HIV-1; p202, p207, and p213 had no significant effects, while p206 and p214 showed intermediate phenotypes. The inhibitory effects on infectious HIV-1 production correlated significantly with the suppression of reporter gene expression by a proviral Moloney MLV-eGFP construct and HIV-1 and Friend MLV LTR luciferase reporter constructs. Altogether, our data show that the antiretroviral activity of PYHIN proteins is conserved between men and mice and further support the key role of nuclear PYHIN proteins in innate antiviral immunity.
- Published
- 2024
- Full Text
- View/download PDF
14. Targeting the Metabolic Paradigms in Cancer and Diabetes.
- Author
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Bosso M, Haddad D, Al Madhoun A, and Al-Mulla F
- Abstract
Dysregulated metabolic dynamics are evident in both cancer and diabetes, with metabolic alterations representing a facet of the myriad changes observed in these conditions. This review delves into the commonalities in metabolism between cancer and type 2 diabetes (T2D), focusing specifically on the contrasting roles of oxidative phosphorylation (OXPHOS) and glycolysis as primary energy-generating pathways within cells. Building on earlier research, we explore how a shift towards one pathway over the other serves as a foundational aspect in the development of cancer and T2D. Unlike previous reviews, we posit that this shift may occur in seemingly opposing yet complementary directions, akin to the Yin and Yang concept. These metabolic fluctuations reveal an intricate network of underlying defective signaling pathways, orchestrating the pathogenesis and progression of each disease. The Warburg phenomenon, characterized by the prevalence of aerobic glycolysis over minimal to no OXPHOS, emerges as the predominant metabolic phenotype in cancer. Conversely, in T2D, the prevailing metabolic paradigm has traditionally been perceived in terms of discrete irregularities rather than an OXPHOS-to-glycolysis shift. Throughout T2D pathogenesis, OXPHOS remains consistently heightened due to chronic hyperglycemia or hyperinsulinemia. In advanced insulin resistance and T2D, the metabolic landscape becomes more complex, featuring differential tissue-specific alterations that affect OXPHOS. Recent findings suggest that addressing the metabolic imbalance in both cancer and diabetes could offer an effective treatment strategy. Numerous pharmaceutical and nutritional modalities exhibiting therapeutic effects in both conditions ultimately modulate the OXPHOS-glycolysis axis. Noteworthy nutritional adjuncts, such as alpha-lipoic acid, flavonoids, and glutamine, demonstrate the ability to reprogram metabolism, exerting anti-tumor and anti-diabetic effects. Similarly, pharmacological agents like metformin exhibit therapeutic efficacy in both T2D and cancer. This review discusses the molecular mechanisms underlying these metabolic shifts and explores promising therapeutic strategies aimed at reversing the metabolic imbalance in both disease scenarios.
- Published
- 2024
- Full Text
- View/download PDF
15. Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness.
- Author
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Obermeyer F, Jankowiak M, Barkas N, Schaffner SF, Pyle JD, Yurkovetskiy L, Bosso M, Park DJ, Babadi M, MacInnis BL, Luban J, Sabeti PC, and Lemieux JE
- Subjects
- Bayes Theorem, Genome, Viral, Humans, Mutation, Regression Analysis, Spike Glycoprotein, Coronavirus chemistry, Spike Glycoprotein, Coronavirus genetics, COVID-19 virology, Genetic Fitness, SARS-CoV-2 genetics
- Abstract
Repeated emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants with increased fitness underscores the value of rapid detection and characterization of new lineages. We have developed PyR
0 , a hierarchical Bayesian multinomial logistic regression model that infers relative prevalence of all viral lineages across geographic regions, detects lineages increasing in prevalence, and identifies mutations relevant to fitness. Applying PyR0 to all publicly available SARS-CoV-2 genomes, we identify numerous substitutions that increase fitness, including previously identified spike mutations and many nonspike mutations within the nucleocapsid and nonstructural proteins. PyR0 forecasts growth of new lineages from their mutational profile, ranks the fitness of lineages as new sequences become available, and prioritizes mutations of biological and public health concern for functional characterization.- Published
- 2022
- Full Text
- View/download PDF
16. An additional NF-κB site allows HIV-1 subtype C to evade restriction by nuclear PYHIN proteins.
- Author
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Bosso M, Stürzel CM, Kmiec D, Badarinarayan SS, Braun E, Ito J, Sato K, Hahn BH, Sparrer KMJ, Sauter D, and Kirchhoff F
- Subjects
- Binding Sites, CD4-Positive T-Lymphocytes cytology, CD4-Positive T-Lymphocytes metabolism, Disease Susceptibility, Genotype, HEK293 Cells, HIV Infections metabolism, HIV Infections pathology, Humans, NF-kappa B metabolism, Phosphoproteins metabolism, Sp1 Transcription Factor genetics, Sp1 Transcription Factor metabolism, Terminal Repeat Sequences genetics, Virus Replication, HIV-1 genetics, NF-kappa B chemistry, Nuclear Proteins metabolism
- Abstract
Subtype C is the most prevalent clade of human immunodeficiency virus type 1 (HIV-1) worldwide. The reasons for this are poorly understood. Here, we demonstrate that a characteristic additional third nuclear factor κB (NF-κB) binding site in the long terminal repeat (LTR) promoter allows subtype C HIV-1 strains to evade restriction by nuclear PYHIN proteins, which sequester the transcription factor Sp1. Further, other LTR alterations are responsible for rare PYHIN resistance of subtype B viruses. Resistance-conferring mutations generally reduce the dependency of HIV-1 on Sp1 for virus production and render LTR transcription highly responsive to stimulation by NF-κB/p65. A third NF-κB binding site increases infectious virus yield in primary CD4
+ T cells in an γ-interferon-inducible protein 16 (IFI16)-dependent manner. Comprehensive sequence analyses suggest that the frequency of circulating PYHIN-resistant HIV-1 strains is increasing. Our finding that an additional NF-κB binding site in the LTR confers resistance to nuclear PYHIN proteins helps to explain the dominance of clade C HIV-1 strains., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2021
- Full Text
- View/download PDF
17. Increased in vitro Anti-HIV Activity of Caffeinium-Functionalized Polyoxometalates.
- Author
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Enderle AG, Bosso M, Groß R, Heiland M, Bollini M, Culzoni MJ, Kirchhoff F, Münch J, and Streb C
- Subjects
- Anions chemical synthesis, Anions chemistry, Anti-HIV Agents chemical synthesis, Anti-HIV Agents chemistry, Caffeine chemistry, Dose-Response Relationship, Drug, Microbial Sensitivity Tests, Polyelectrolytes chemical synthesis, Polyelectrolytes chemistry, Anions pharmacology, Anti-HIV Agents pharmacology, Caffeine pharmacology, HIV drug effects, Polyelectrolytes pharmacology
- Abstract
Polyoxometalates (POMs), molecular metal oxide anions, are inorganic clusters with promising antiviral activity. Herein we report increased anti-HIV-1 activity of a POM when electrostatically combined with organic counter-cations. To this end, Keggin-type cerium tungstate POMs have been combined with organic methyl-caffeinium (Caf) cations, and their cytotoxicity, antiviral activity and mode of action have been studied. The novel compound, Caf
4 K[β2 -CeSiW11 O39 ]×H2 O, exhibits sub-nanomolar antiviral activity and inhibits HIV-1 infectivity by acting on an early step of the viral infection cycle. This work demonstrates that combination of POM anions and organic bioactive cations can be a powerful new strategy to increase antiviral activity of these inorganic compounds., (© 2021 The Authors. ChemMedChem published by Wiley-VCH GmbH.)- Published
- 2021
- Full Text
- View/download PDF
18. IFI16 knockdown in primary HIV-1 target cells.
- Author
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Bosso M, Bozzo CP, Volcic M, and Kirchhoff F
- Subjects
- Humans, CD4-Positive T-Lymphocytes metabolism, CD4-Positive T-Lymphocytes virology, Gene Knockdown Techniques, HIV Infections, HIV-1 metabolism, Macrophages metabolism, Macrophages virology, Nuclear Proteins genetics, Nuclear Proteins metabolism, Phosphoproteins genetics, Phosphoproteins metabolism
- Abstract
IFI16 is an important player of the host intrinsic immune response. Among others, it has been reported to sense intermediate products of HIV-1 reverse transcription in the cytosol and to sequester the transcription factor Sp1 in the nucleus to attenuate viral gene expression. Here, we present three different methods to reduce IFI16 protein expression levels in HIV-1 primary target cells. These techniques can be adapted for the investigation of other cellular factors in primary macrophages and CD4
+ T lymphocytes. For complete details on the use and execution of this protocol, please refer to Hotter et al. (2019) and Bosso et al. (2020)., Competing Interests: The authors declare no competing interests., (© 2020 The Author(s).)- Published
- 2020
- Full Text
- View/download PDF
19. Emerging Role of PYHIN Proteins as Antiviral Restriction Factors.
- Author
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Bosso M and Kirchhoff F
- Subjects
- Animals, Humans, Immunity, Innate genetics, Multigene Family, Nuclear Proteins genetics, Virus Diseases immunology, Virus Diseases virology, Disease Resistance immunology, Host-Pathogen Interactions immunology, Nuclear Proteins metabolism, Virus Diseases metabolism
- Abstract
Innate immune sensors and restriction factors are cellular proteins that synergize to build an effective first line of defense against viral infections. Innate sensors are usually constitutively expressed and capable of detecting pathogen-associated molecular patterns (PAMPs) via specific pattern recognition receptors (PRRs) to stimulate the immune response. Restriction factors are frequently upregulated by interferons (IFNs) and may inhibit viral pathogens at essentially any stage of their replication cycle. Members of the Pyrin and hematopoietic interferon-inducible nuclear (HIN) domain (PYHIN) family have initially been recognized as important sensors of foreign nucleic acids and activators of the inflammasome and the IFN response. Accumulating evidence shows, however, that at least three of the four members of the human PYHIN family restrict viral pathogens independently of viral sensing and innate immune activation. In this review, we provide an overview on the role of human PYHIN proteins in the innate antiviral immune defense and on viral countermeasures.
- Published
- 2020
- Full Text
- View/download PDF
20. Effect of sleeve gastrectomy on the expression of meteorin-like (METRNL) and Irisin (FNDC5) in muscle and brown adipose tissue and its impact on uncoupling proteins in diet-induced obesity rats.
- Author
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Jamal MH, Abu-Farha M, Al-Khaledi G, Al-Sabah S, Ali H, Cherian P, Al-Khairi I, AlOtaibi F, Al-Ali W, Bosso M, Dsouza C, Abubaker J, and Al-Mulla F
- Subjects
- Adipose Tissue metabolism, Animals, Diet, Fibronectins genetics, Fibronectins metabolism, Gastrectomy, Kuwait, Male, Mitochondrial Uncoupling Proteins, Muscles metabolism, Rats, Rats, Sprague-Dawley, Adipose Tissue, Brown, Obesity genetics, Obesity surgery
- Abstract
Background: Bariatric surgery is well established as a treatment for obesity and associated complications. This procedure improves metabolic homeostasis through changes in energy expenditure. We hypothesized that sleeve gastrectomy (SG) improves metabolic homeostasis by modulating energy expenditure and enhancing thermogenesis through increasing the expression level of meteorin-like protein (METRNL) and fibronectin type III domain-containing protein 5 (FNDC5/Irisin) through uncoupling proteins 1/2/3 (UCP1, UCP2, and UCP3)., Objectives: To study the effect of SG on the levels of proteins involved in thermogenesis process., Setting: Laboratory rats at Kuwait University., Methods: Male Sprague-Dawley rats, aged 4 to 5 weeks, were divided into 2 groups, control (n = 11) and diet-induced obesity (DIO) (n = 22). The control group was fed regular rat chow ad libitum, whereas the DIO group was fed cafeteria diet "high-fat/carbohydrate diet" ad libitum. At 21 weeks, rats in the DIO group that weighed 20% more than the control group animals underwent surgery. These rats were randomly subdivided into Sham and SG operation groups. Gene expression was evaluated, and enzyme-linked immunosorbent assays were employed to assess the changes in gene and protein levels in tissue and circulation., Results: The protein expression data revealed an increase in METRNL levels in the muscles and white adipose tissue of SG animals. METRNL level in circulation in SG animals was reduced compared with control and Sham rats. The level of Irisin increased in the muscle of SG animals compared with the control and Sham group animals; however, a decrease in Irisin level was observed in the white adipose tissue and brown adipose tissue of SG animals compared with controls. Gene expression analysis revealed decreased METRNL levels in muscle tissues in the SG group compared with the control group animals. Increased expression of FNDC5 (Irisin), UCP2, and UCP3 in the muscle tissue of SG animals was also observed. Furthermore, the levels of UCP1, UCP2, UCP3, and METRNL in the brown adipose tissue of SG animals were upregulated. No significant alteration in the gene expression of Irisin was observed in brown adipose tissue., Conclusions: Sleeve gastrectomy induces weight loss through complex mechanisms that may include browning of fat., (Copyright © 2020 American Society for Bariatric Surgery. Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
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21. Nuclear PYHIN proteins target the host transcription factor Sp1 thereby restricting HIV-1 in human macrophages and CD4+ T cells.
- Author
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Bosso M, Prelli Bozzo C, Hotter D, Volcic M, Stürzel CM, Rammelt A, Ni Y, Urban S, Becker M, Schelhaas M, Wittmann S, Christensen MH, Schmidt FI, Gramberg T, Sparrer KMJ, Sauter D, and Kirchhoff F
- Subjects
- CD4-Positive T-Lymphocytes metabolism, CD4-Positive T-Lymphocytes virology, Cell Nucleus genetics, DNA, Viral genetics, HEK293 Cells, HIV Infections immunology, HIV Infections pathology, HIV Infections virology, HIV-1 genetics, HIV-1 isolation & purification, Hep G2 Cells, Humans, Immunity, Innate immunology, Inflammasomes genetics, Inflammasomes immunology, Macrophages metabolism, Macrophages virology, Nuclear Proteins genetics, Sp1 Transcription Factor genetics, Virus Replication, CD4-Positive T-Lymphocytes immunology, Cell Nucleus metabolism, HIV Infections prevention & control, HIV-1 immunology, Macrophages immunology, Nuclear Proteins metabolism, Sp1 Transcription Factor metabolism
- Abstract
Members of the family of pyrin and HIN domain containing (PYHIN) proteins play an emerging role in innate immunity. While absent in melanoma 2 (AIM2) acts a cytosolic sensor of non-self DNA and plays a key role in inflammasome assembly, the γ-interferon-inducible protein 16 (IFI16) restricts retroviral gene expression by sequestering the transcription factor Sp1. Here, we show that the remaining two human PYHIN proteins, i.e. myeloid cell nuclear differentiation antigen (MNDA) and pyrin and HIN domain family member 1 (PYHIN1 or IFIX) share this antiretroviral function of IFI16. On average, knock-down of each of these three nuclear PYHIN proteins increased infectious HIV-1 yield from human macrophages by more than an order of magnitude. Similarly, knock-down of IFI16 strongly increased virus transcription and production in primary CD4+ T cells. The N-terminal pyrin domain (PYD) plus linker region containing a nuclear localization signal (NLS) were generally required and sufficient for Sp1 sequestration and anti-HIV-1 activity of IFI16, MNDA and PYHIN1. Replacement of the linker region of AIM2 by the NLS-containing linker of IFI16 resulted in a predominantly nuclear localization and conferred direct antiviral activity to AIM2 while attenuating its ability to form inflammasomes. The reverse change caused nuclear-to-cytoplasmic relocalization of IFI16 and impaired its antiretroviral activity but did not result in inflammasome assembly. We further show that the Zn-finger domain of Sp1 is critical for the interaction with IFI16 supporting that pyrin domains compete with DNA for Sp1 binding. Finally, we found that human PYHIN proteins also inhibit Hepatitis B virus and simian vacuolating virus 40 as well as the LINE-1 retrotransposon. Altogether, our data show that IFI16, PYHIN1 and MNDA restrict HIV-1 and other viral pathogens by interfering with Sp1-dependent gene expression and support an important role of nuclear PYHIN proteins in innate antiviral immunity., Competing Interests: NO authors have competing interests.
- Published
- 2020
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22. The Two Faces of ACE2: The Role of ACE2 Receptor and Its Polymorphisms in Hypertension and COVID-19.
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Bosso M, Thanaraj TA, Abu-Farha M, Alanbaei M, Abubaker J, and Al-Mulla F
- Abstract
The mechanism for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection requires the binding of the virus to the angiotensin-converting enzyme 2 (ACE2) receptor, well-known for its role in counteracting ACE. ACE2 is involved in modulating blood pressure and establishing blood pressure homeostasis. Recently, a critical debatable question has arisen whether using antihypertensive medications will have a favorable impact on people infected with SARS-CoV-2 or a deleterious one, mainly because angiotensin-converting enzyme inhibitor (ACEI) and angiotensin-receptor blocker (ARB) therapy can modulate the expression of ACE2 protein. The concern is that the use of ACEIs and ARBs will increase the expression of ACE2 and increase patient susceptibility to viral host cell entry and propagation. On the other hand, several genetic association studies have examined the relationship between ACE2 genetic variants and the risk of developing hypertension in different ethnic populations. In this review, we discuss the ongoing arguments in the literature about ACE2's role in mortality rate among coronavirus disease 2019 (COVID-19) patients comorbid with hypertension and critically evaluate the current debate about the usage or discontinuation of ACEI/ARB antihypertensive drugs. Moreover, we explore the two opposing roles that ACE2 genetic variants might be playing in COVID-19 by reducing ACE2 receptor effectiveness and mitigating SARS-CoV-2 infectivity., (© 2020 Dasman Diabetes Institute.)
- Published
- 2020
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23. Cellular Factors Targeting HIV-1 Transcription and Viral RNA Transcripts.
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Nchioua R, Bosso M, Kmiec D, and Kirchhoff F
- Subjects
- DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, HIV Infections genetics, HIV Infections virology, HIV-1 physiology, Host-Pathogen Interactions, Humans, Nuclear Proteins genetics, Nuclear Proteins metabolism, Phosphoproteins genetics, Phosphoproteins metabolism, RNA, Viral metabolism, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, Transcription Factors genetics, Transcription Factors metabolism, Virus Replication, HIV Infections metabolism, HIV-1 genetics, RNA, Viral genetics
- Abstract
Restriction factors are structurally and functionally diverse cellular proteins that constitute a first line of defense against viral pathogens. Exceptions exist, but typically these proteins are upregulated by interferons (IFNs), target viral components, and are rapidly evolving due to the continuous virus-host arms race. Restriction factors may target HIV replication at essentially each step of the retroviral replication cycle, and the suppression of viral transcription and the degradation of viral RNA transcripts are emerging as major innate immune defense mechanisms. Recent data show that some antiviral factors, such as the tripartite motif-containing protein 22 (TRIM22) and the g-IFN-inducible protein 16 (IFI16), do not target HIV-1 itself but limit the availability of the cellular transcription factor specificity protein 1 (Sp1), which is critical for effective viral gene expression. In addition, several RNA-interacting cellular factors including RNAse L, the NEDD4-binding protein 1 (N4BP1), and the zinc finger antiviral protein (ZAP) have been identified as important immune effectors against HIV-1 that may be involved in the maintenance of the latent viral reservoirs, representing the major obstacle against viral elimination and cure. Here, we review recent findings on specific cellular antiviral factors targeting HIV-1 transcription or viral RNA transcripts and discuss their potential role in viral latency.
- Published
- 2020
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24. IFI16 Targets the Transcription Factor Sp1 to Suppress HIV-1 Transcription and Latency Reactivation.
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Hotter D, Bosso M, Jønsson KL, Krapp C, Stürzel CM, Das A, Littwitz-Salomon E, Berkhout B, Russ A, Wittmann S, Gramberg T, Zheng Y, Martins LJ, Planelles V, Jakobsen MR, Hahn BH, Dittmer U, Sauter D, and Kirchhoff F
- Subjects
- Animals, CD4-Positive T-Lymphocytes virology, Cells, Cultured, Genotype, HIV-1 classification, HIV-1 genetics, HIV-1 growth & development, Mice, HIV-1 immunology, Immunologic Factors metabolism, Nuclear Proteins metabolism, Phosphoproteins metabolism, Sp1 Transcription Factor antagonists & inhibitors, Transcription, Genetic, Virus Activation, Virus Latency
- Abstract
The interferon γ-inducible protein 16 (IFI16) is known as immune sensor of retroviral DNA intermediates. We show that IFI16 restricts HIV-1 independently of immune sensing by binding and inhibiting the host transcription factor Sp1 that drives viral gene expression. This antiretroviral activity and ability to bind Sp1 require the N-terminal pyrin domain and nuclear localization of IFI16, but not the HIN domains involved in DNA binding. Highly prevalent clade C HIV-1 strains are more resistant to IFI16 and less dependent on Sp1 than other HIV-1 subtypes. Furthermore, inhibition of Sp1 by IFI16 or pharmacologically by Mithramycin A suppresses reactivation of latent HIV-1 in CD4
+ T cells. Finally, IFI16 also inhibits retrotransposition of LINE-1, known to engage Sp1, and murine IFI16 homologs restrict Friend retrovirus replication in mice. Thus, IFI16 restricts retroviruses and retrotransposons by interfering with Sp1-dependent gene expression, and evasion from this restriction may facilitate spread of HIV-1 subtype C., (Copyright © 2019 Elsevier Inc. All rights reserved.)- Published
- 2019
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25. Exploiting the human peptidome for novel antimicrobial and anticancer agents.
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Bosso M, Ständker L, Kirchhoff F, and Münch J
- Subjects
- Anti-Infective Agents chemistry, Anti-Infective Agents isolation & purification, Antineoplastic Agents chemistry, Antineoplastic Agents isolation & purification, Communicable Diseases drug therapy, Humans, Neoplasms drug therapy, Peptides chemistry, Peptides isolation & purification, Proteomics methods, Anti-Infective Agents pharmacology, Antineoplastic Agents pharmacology, Drug Discovery methods, Peptide Library, Peptides pharmacology
- Abstract
Infectious diseases and cancers are leading causes of death and pose major challenges to public health. The human peptidome encompasses millions of compounds that display an enormous structural and functional diversity and represents an excellent source for the discovery of endogenous agents with antimicrobial and/or anticancer activity. Here, we discuss how to exploit the human peptidome for novel antimicrobial and anticancer agents through the generation of peptide libraries from human body fluids and tissues and stepwise purification of bioactive compounds., (Copyright © 2017 Elsevier Ltd. All rights reserved.)
- Published
- 2018
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26. Human Cytomegalovirus Particles Treated with Specific Antibodies Induce Intrinsic and Adaptive but Not Innate Immune Responses.
- Author
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Wu Z, Qin R, Wang L, Bosso M, Scherer M, Stamminger T, Hotter D, Mertens T, and Frascaroli G
- Subjects
- CD4-Positive T-Lymphocytes pathology, CD4-Positive T-Lymphocytes virology, CD8-Positive T-Lymphocytes pathology, CD8-Positive T-Lymphocytes virology, Cytomegalovirus Infections pathology, Female, Humans, Immunity, Innate, Macrophages pathology, Macrophages virology, Male, Antibodies, Viral immunology, CD4-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes immunology, Cytomegalovirus immunology, Cytomegalovirus Infections immunology, Immunity, Cellular, Macrophages immunology
- Abstract
Human cytomegalovirus (HCMV) persistently infects 40% to 100% of the human population worldwide. Experimental and clinical evidence indicates that humoral immunity to HCMV plays an important role in restricting virus dissemination and protecting the infected host from disease. Specific immunoglobulin preparations from pooled plasma of adults selected for high titers of HCMV antibodies have been used for the prevention of CMV disease in transplant recipients and pregnant women. Even though incubation of HCMV particles with these preparations leads to the neutralization of viral infectivity, it is still unclear whether the antibody-treated HCMV particles (referred to here as HCMV-Ab) enter the cells and modulate antiviral immune responses. Here we demonstrate that HCMV-Ab did enter macrophages. HCMV-Ab did not initiate the expression of immediate early antigens (IEAs) in macrophages, but they induced an antiviral state and rendered the cells less susceptible to HCMV infection upon challenge. Resistance to HCMV infection seemed to be due to the activation of intrinsic restriction factors and was independent of interferons. In contrast to actively infected cells, autologous NK cells did not degranulate against HCMV-Ab-treated macrophages, suggesting that these cells may not be eliminated by innate effector cells. Interestingly, HCMV-Ab-treated macrophages stimulated the proliferation of autologous adaptive CD4
+ and CD8+ T cells. Our findings not only expand the current knowledge on virus-antibody immunity but may also be relevant for future vaccination strategies. IMPORTANCE Human cytomegalovirus (HCMV), a common herpesvirus, establishes benign but persistent infections in immunocompetent hosts. However, in subjects with an immature or dysfunctional immune system, HCMV is a major cause of morbidity and mortality. Passive immunization has been used in different clinical settings with variable clinical results. Intravenous hyperimmune globulin preparations (IVIg) are obtained from pooled adult human plasma selected for high anti-CMV antibody titers. While HCMV neutralization can be shown in vitro using different systems, data are lacking regarding the cross-influence of IVIg administration on the cellular immune responses. The aim of this study was to evaluate the effects of IVIg on distinct components of the immune response against HCMV, including antigen presentation by macrophages, degranulation of innate natural killer cells, and proliferation of adaptive CD4+ and CD8+ T cells., (Copyright © 2017 American Society for Microbiology.)- Published
- 2017
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27. Evaluation of an active humidification system for inspired gas.
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Roux NG, Plotnikow GA, Villalba DS, Gogniat E, Feld V, Ribero Vairo N, Sartore M, Bosso M, Scapellato JL, Intile D, Planells F, Noval D, Buñirigo P, Jofré R, and Díaz Nielsen E
- Abstract
Objectives: The effectiveness of the active humidification systems (AHS) in patients already weaned from mechanical ventilation and with an artificial airway has not been very well described. The objective of this study was to evaluate the performance of an AHS in chronically tracheostomized and spontaneously breathing patients., Methods: Measurements were quantified at three levels of temperature (T°) of the AHS: level I, low; level II, middle; and level III, high and at different flow levels (20 to 60 L/minute). Statistical analysis of repeated measurements was performed using analysis of variance and significance was set at a P<0.05., Results: While the lowest temperature setting (level I) did not condition gas to the minimum recommended values for any of the flows that were used, the medium temperature setting (level II) only conditioned gas with flows of 20 and 30 L/minute. Finally, at the highest temperature setting (level III), every flow reached the minimum absolute humidity (AH) recommended of 30 mg/L., Conclusion: According to our results, to obtain appropiate relative humidity, AH and T° of gas one should have a device that maintains water T° at least at 53℃ for flows between 20 and 30 L/m, or at T° of 61℃ at any flow rate.
- Published
- 2015
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28. Evaluation of tracheal cuff pressure variation in spontaneously breathing patients.
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Plotnikow GA, Roux N, Feld V, Gogniat E, Villalba D, Ribero NV, Sartore M, Bosso M, Quiroga C, Leiva V, Scrigna M, Puchulu F, Distéfano E, Scapellato JL, Intile D, Planells F, Noval D, Buñirigo P, Jofré R, and Nielsen ED
- Abstract
Background: Most of the studies referring cuff tubes' issues were conducted on intubated patients. Not much is known about the cuff pressure performance in chronically tracheostomized patients disconnected from mechanical ventilation., Objective: To evaluate cuff pressure (CP) variation in tracheostomized, spontaneously breathing patients in a weaning rehabilitation center., Materials and Methods: Experimental setup to test instruments in vitro, in which the gauge (TRACOE) performance at different pressure levels was evaluated in six tracheostomy tubes, and a clinical setupin which CP variation over 24 h, every 4 h, and for 6 days was measured in 35 chronically tracheostomized clinically stable, patients who had been disconnected from mechanical ventilation for at least 72 h. The following data were recorded: Tube brand, type, and size; date of the tube placed; the patient's body position; the position of the head; axillary temperature; pulse and respiration rates; blood pressure; and pulse oximetry., Results: In vitro difference between the initial pressure (IP) and measured pressure (MP) was statistically significant (P < 0.05). The difference between the IP and MP was significant when selecting for various tube brands (P < 0.05). In the clinical set-up, 207 measurements were performed and the CP was >30 cm H2O in 6.28% of the recordings, 20-30 cm H2O in 42.0% of the recordings, and <20 cm H2O in 51.69% of the recordings., Conclusion: The systematic CP measurement in chronically tracheostomized, spontaneously breathing patients showed high variability, which was independent of tube brand, size, type, or time of placement. Consequently, measurements should be made more frequently.
- Published
- 2013
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29. Whole genome amplification of DNA extracted from FFPE tissues.
- Author
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Bosso M and Al-Mulla F
- Subjects
- Alleles, Comparative Genomic Hybridization, Electrophoresis, Agar Gel, Gene Dosage genetics, Humans, In Situ Hybridization, Fluorescence, Microdissection, Microscopy, Polymorphism, Single Nucleotide genetics, Reproducibility of Results, Tissue Extracts, DNA isolation & purification, Formaldehyde chemistry, Genome, Human genetics, Paraffin Embedding methods, Polymerase Chain Reaction methods, Tissue Fixation methods
- Abstract
Whole genome amplification systems were developed to meet the increasing research demands on DNA resources and to avoid DNA shortage. The technology enables amplification of nanogram amounts of DNA into microgram quantities and is increasingly used in the amplification of DNA from multiple origins such as blood, fresh frozen tissue, formalin-fixed paraffin-embedded tissues, saliva, buccal swabs, bacteria, and plant and animal sources. This chapter focuses on the use of GenomePlex(®) tissue Whole Genome Amplification Kit, to amplify DNA directly from archived tissue. In addition, this chapter documents our unique experience with the utilization of GenomePlex(®) amplified DNA using several molecular techniques including metaphase Comparative Genomic Hybridization, array Comparative Genomic Hybridization, and real-time quantitative polymerase chain reaction assays. GenomePlex(®) is a registered trademark of Rubicon Genomics Incorporation.
- Published
- 2011
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30. Proctocolectomy for ulcerative colitis after liver transplantation for primary sclerosing cholangitis.
- Author
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Bosso MC, Marchesa PE, Ricchiuti A, Giacardi A, Cocchis D, Campi M, Palisi M, and Salizzoni M
- Subjects
- Humans, Cholangitis, Sclerosing surgery, Colitis, Ulcerative surgery, Liver Transplantation adverse effects, Proctocolectomy, Restorative
- Abstract
Background: Sclerosing cholangitis is a chronic cholestatic liver disease of unknown etiology. Immunologic and genetic factors may be involved in the pathogenesis of the disease, characterized by fibrosis involving bile ducts, which can progress to biliary cirrhosis and cholangiocarcinoma (8%-30%). Sclerosing cholangitis is frequently associated with inflammatory bowel diseases, especially ulcerative colitis (60%-80%), which may require a proctocolectomy with ileal pouch anal anastomosis if there is no response to therapy or the appearance of colonic carcinoma., Patients and Methods: Among 1629 liver recipients from 1990 to 2008, 47 (2.9%) had sclerosing cholangitis as the cause of cirrhosis. Forty two percent of these also had associated inflammatory bowel disease with 34% displaying ulcerative colitis. Eight patients died after liver transplantation (OLT) in the absence of recurrence of sclerosing cholangitis. Among the remaining 39 patients, 17 (43.6%) developed recurrent of sclerosing cholangitis; three required re-OLT, and among these three patients, one developed another recurrence. After OLT, ulcerative colitis persisted in an active state in eight patients, requiring proctocolectomy with ileal pouch-anal anastomosis for three patients (median time after OLT was 78.6 months)., Results: One of the three patients who had proctocolectomy had an immediate complication, a pelvic hematoma, which required a surgical approach. One patient developed acute pouchitis 15 months after OLT, medically treated with antibiotics and corticoids. Histology of the colectomy specimen demonstrated colorectal cancer in two patients (pT3N0 and pT2N0) and high-grade dysplasia in the remaining subjects. All patients displayed a cure of their colonic disease (median follow-up 14 months) despite two patients developing recurrence of the liver disease., Conclusion: Proctocolectomy with ileal pouch anal anastomosis is safe in patients who underwent OLT for sclerosing cholangitis in association with ulcerative colitis. If not surgically treated, patients may receive immunosuppression to prevent rejection and disease recurrence, avoiding at the same time the occurrence of "de novo" neoplasms. Mammalian target or rapamycin inhibitors may have an important role but this must be established with randomized controlled trials.
- Published
- 2009
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31. The sentinel node in anal carcinoma.
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Mistrangelo M, Mobiglia A, Mussa B, Bellò M, Pelosi E, Goss M, Bosso MC, Moro F, and Sandrucci S
- Subjects
- Anus Neoplasms diagnostic imaging, Anus Neoplasms surgery, Carcinoma diagnostic imaging, Carcinoma surgery, Female, Humans, Lymph Node Excision, Lymph Nodes surgery, Lymphatic Metastasis, Middle Aged, Radionuclide Imaging, Anus Neoplasms pathology, Carcinoma pathology, Lymph Nodes diagnostic imaging, Lymph Nodes pathology, Sentinel Lymph Node Biopsy methods
- Abstract
Aims and Background: Anal cancer is a rare condition. The inguinal lymph nodes are the most common site of metastasis in this neoplasm. The inguinal lymph node status is an important prognostic indicator and the presence of metastases is an independent prognostic factor for local failure and overall mortality. Depending on the primary tumor size and histological differentiation, metastasis to superficial inguinal lymph nodes occurs in 15-25% of cases., Methods and Study Design: To evaluate the inguinal lymph node status we performed a search for the sentinel node in a female patient affected by squamous and carcinoma., Results: Identification and examination of the sentinel node was positive and postoperative histology showed the presence of bilateral lymph node metastases., Conclusions: We suggest that examination of the sentinel node in anal cancer could be an efficient way to establish the inguinal lymph node status, which would help the clinician to plan and perform adequate treatment.
- Published
- 2002
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32. Effects of subclinical bovine paratuberculosis on in-vitro polymorphonuclear neutrophil migration.
- Author
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Dotta U, Guglielmino R, Cagnasso A, D'Angelo A, Prato S, and Bosso M
- Subjects
- Animals, Cattle, Feces microbiology, Female, In Vitro Techniques, Neutrophil Activation drug effects, Zymosan pharmacology, Chemotaxis, Leukocyte immunology, Mycobacterium avium subsp. paratuberculosis isolation & purification, Neutrophils immunology, Paratuberculosis immunology
- Abstract
Migration of polymorphonuclear neutrophils (PMNs) [unstimulated or stimulated with zymosan-activated serum (ZAS)] from 18 cows was measured in a microwell filter assay. Of these animals, 10 were subclinically infected with Mycobacterium paratuberculosis and shown by culture to be excreting the organism in the faeces; the remaining eight were clinically normal and negative for M. paratuberculosis on faecal culture. PMN "net migration" (stimulated minus unstimulated cells) of the infected cows was significantly lower than that of the uninfected cows. Migration of unstimulated cells in the infected cows did not differ from that in the uninfected cows. It would therefore appear that the infection influenced only the migratory response of the ZAS-stimulated cells. 1999 Harcourt Publishers Ltd.
- Published
- 1999
- Full Text
- View/download PDF
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