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230 results on '"Bottaro, Sandro"'

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1. Hepatitis C virus RNA is 5′-capped with flavin adenine dinucleotide

3. How to learn from inconsistencies: Integrating molecular simulations with experimental data

4. Promoting transparency and reproducibility in enhanced molecular simulations

5. A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs

6. Effects and limitations of a nucleobase-driven backmapping procedure for nucleic acids using steered Molecular Dynamics

8. Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies

9. Free Energy Landscape of GAGA and UUCG RNA Tetraloops

10. Empirical corrections to the Amber RNA force field with Target Metadynamics

11. RNA Folding Pathways in Stop Motion

12. Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments

13. Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations

14. Towards de novo RNA 3D structure prediction

15. Accurate multiple time step in biased molecular simulations

16. The Role of Nucleobase Interactions in RNA Structure and Dynamics

17. Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

23. Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop

24. Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop

25. Hepatitis C virus RNA is 5'-capped with flavin adenine dinucleotide

28. LLM-PBC: Logic Learning Machine-Based Explainable Rules Accurately Stratify the Genetic Risk of Primary Biliary Cholangitis

29. Conformational heterogeneity of UCAAUC RNA oligonucleotide from molecular dynamics simulations, SAXS, and NMR experiments

31. MEDTEC Students against Coronavirus: Investigating the Role of Hemostatic Genes in the Predisposition to COVID-19 Severity

32. LLM-PBC: Logic Learning Machine-Based Explainable Rules Accurately Stratify the Genetic Risk of Primary Biliary Cholangitis.

34. Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations

38. Author response: Structure and dynamics of a nanodisc by integrating NMR, SAXS and SANS experiments with molecular dynamics simulations

42. Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution

43. Structure and dynamics of a nanodisc by integrating NMR, SAXS and SANS experiments with molecular dynamics simulations.

44. Integrating NMR and simulations reveals motions in the UUCG tetraloop

46. Integrating Molecular Simulation and Experimental Data:A Bayesian/Maximum Entropy Reweighting Approach

47. How to learn from inconsistencies:Integrating molecular simulations with experimental data

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