48 results on '"Brendan Mullan"'
Search Results
2. Everolimus improves the efficacy of dasatinib in PDGFRα-driven glioma
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Sabine Mueller, Rodrigo Cartaxo, Viveka Nand Yadav, Rajen Mody, Cassie Kline, Alyssa Paul, Zachary Miklja, Brendan Mullan, Patricia L. Robertson, Ruby Siada, Marcia Leonard, Sriram Venneti, Taylor Garcia, Amy K. Bruzek, Stefanie Stallard, Hugh J. L. Garton, Bernard L. Marini, Carl Koschmann, Chase Thomas, Kyle Wierzbicki, Jann N. Sarkaria, Arul M. Chinnaiyan, Theodore Nicolaides, Daniel R. Wahl, Sarah Leary, Chandan Kumar-Sinha, Chana Glasser, Hemant Parmar, Jessica R. Cummings, Ian Wolfe, Tao Yang, Timothy N. Phoenix, and Manjunath P. Pai
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Male ,0301 basic medicine ,Oncology ,medicine.medical_treatment ,Dasatinib ,Gene Expression ,Tyrosine-kinase inhibitor ,Targeted therapy ,Mice ,0302 clinical medicine ,Pregnancy ,hemic and lymphatic diseases ,Antineoplastic Combined Chemotherapy Protocols ,Tumor Cells, Cultured ,Medicine ,Molecular Targeted Therapy ,Child ,0303 health sciences ,Brain Neoplasms ,Drug Synergism ,Glioma ,General Medicine ,3. Good health ,Child, Preschool ,030220 oncology & carcinogenesis ,Female ,Research Article ,medicine.drug ,medicine.medical_specialty ,ATP Binding Cassette Transporter, Subfamily B ,Adolescent ,medicine.drug_class ,PDGFRA ,Receptor, Platelet-Derived Growth Factor beta ,03 medical and health sciences ,Pharmacokinetics ,In vivo ,Internal medicine ,Animals ,Humans ,Everolimus ,Adverse effect ,Cell Proliferation ,030304 developmental biology ,business.industry ,medicine.disease ,030104 developmental biology ,Drug Screening Assays, Antitumor ,business - Abstract
BackgroundPediatric and adult high-grade glioma (HGG) frequently harbor PDGFRA alterations. We hypothesized that co-treatment with everolimus may improve the efficacy of dasatinib in PDGFRα-driven glioma through combinatorial synergism and increased tumor accumulation of dasatinib.MethodsDose response, synergism studies, P-gp inhibition and pharmacokinetic studies were performed on in vitro and in vivo human and mouse models of HGG. Six patients with recurrent PDGFRα-driven glioma were treated with dasatinib and everolimus.ResultsDasatinib effectively inhibited the proliferation of mouse and human primary HGG cells with a variety of PDGFRA alterations. Dasatinib exhibited synergy with everolimus in the treatment of HGG cells at low nanomolar concentrations of both agents, with reduction in mTOR signaling that persists after dasatinib treatment alone. Prolonged exposure to everolimus significantly improved the CNS retention of dasatinib and extended survival of PPK tumor bearing mice. Pediatric patients (n=6) with glioma tolerated this combination without significant adverse events. Recurrent patients (n=4) demonstrated median overall survival of 8.5 months.ConclusionEfficacy of dasatinib treatment of PDGFRα-driven HGG is improved with everolimus and suggests a promising route for improving targeted therapy for this patient population.Trial RegistrationClinicalTrials.gov NCT03352427FundingThe authors thank the patients and their families for participation in this study. CK is supported by NIH/NINDS K08-NS099427-01, the University of Michigan Chad Carr Pediatric Brain Tumor Center, the Chad Tough Foundation, Hyundai Hope on Wheels, Catching up With Jack, Prayers from Maria Foundation, U CAN-CER VIVE FOUNDATION, Morgan Behen Golf Classic, and the DIPG Collaborative. The PEDS-MIONCOSEQ study was supported by grant 1UM1HG006508 from the National Institutes of Health Clinical Sequencing Exploratory Research Award (PI: Arul Chinnaiyan).
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- 2020
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3. CSIG-09. THERAPEUTIC TARGETING OF PRENATAL PONTINE ID1 SIGNALING IN DIFFUSE MIDLINE GLIOMA
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Dana Messinger, Micah Harris, Jessica Cummings, Chase Thomas, Tao Yang, Stefan Sweha, Rinette Woo, Robert Siddaway, Martin Burkert, Stefanie Stallard, Tingting Qin, Brendan Mullan, Ruby Siada, Ramya Ravindran, Michael Niculcea, Abigail Dowling, Joshua Bradin, Kevin Ginn, Melissa Gener, Kathleen Dorris, Nicholas Vitanza, Susanne Schmidt, Jasper Spitzer, Jiang Li, Mariella Filbin, Xuhong Cao, Maria Castro, Pedro Lowenstein, Rajen Mody, Arul Chinnaiyan, Pierre-Yves Desprez, Sean McAllister, Matthew Dun, Cynthia Hawkins, Sebastian Waszak, Sriram Venneti, Carl Koschmann, and Viveka Yadav
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Cancer Research ,Oncology ,Neurology (clinical) - Abstract
Diffuse midline gliomas (DMG) are highly invasive brain tumors with rare survival beyond two years past diagnosis. The mechanism behind tumor invasion is currently not well understood. Previous reports demonstrate upregulation of the protein ID1 with H3K27M and ACVR1 mutations in DMG, but this has not been confirmed in human tumors or therapeutically targeted. Whole exome, RNA, and ChIP-sequencing were performed on the ID1 locus in DMG tissue. Scratch-assay migration and transwell invasion assays of cultured cells were performed following shRNA-mediated ID1-knockdown. In vitro and in vivo genetic and pharmacologic [cannabidiol (CBD)] inhibition of ID1 on DMG tumor growth was assessed. Additional in vitro experiments were performed to determine a potential mechanism of action for CBD-mediated effects. Self-reported CBD dosing information was collected from DMG patients. We found that increased ID1 expression in human DMG and in utero electroporation (IUE) murine tumors is associated with H3K27M mutation and brainstem location. ChIP-sequencing indicates a similar epigenetically active state at ID1 regulatory regions in human H3K27M-DMG tumors and prenatal pontine cells. Higher ID1-expressing astrocyte-like DMG cells share a transcriptional program with oligo/astrocyte-precursor cells (OAPCs) from the developing human brain and demonstrate upregulation of the migration regulatory protein SPARCL1. Genetic and pharmacologic (CBD) suppression of ID1 decreases tumor cell migration, tumor growth, and to a lesser extent invasion in both murine IUE and multiple patient-derived in vivo DMG models, improving mouse survival. ID1 knockdown significantly decreases the effect of CBD on migration, tumor growth, and invasion. CBD increases reactive oxygen species production, which also affects DMG cell proliferation in a non-ID1 mediated manner. Overall, we find that H3K27M-mediated reactivation of ID1 in DMG results in a SPARCL1+ migratory transcriptional program that is therapeutically targetable with CBD.
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- 2022
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4. Targeting integrated epigenetic and metabolic pathways in lethal childhood PFA ependymomas
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Arul M. Chinnaiyan, Derek Dang, Nicholas K. Foreman, Jill Bayliss, Karin M. Muraszko, Fusheng Yang, Martin P. Ogrodzinski, Sriram Venneti, Debra Hawes, Li Jiang, Siva Kumar Natarajan, Andrew M. Donson, Drew Pratt, Stefan Sweha, Javad Nazarian, Chan Chung, Benita Tamrazi, Christopher Dunham, Hugh J. L. Garton, Joanna J. Phillips, Jason Heth, Sophia Y. Lunt, Deepak Nagrath, Brendan Mullan, Marcin Cieslik, Jin Heon, Marcel Kool, Stefan Bluml, Chao Lu, Abhinav Achreja, Andrey Korshunov, C. David Allis, Benjamin R. Sabari, Miriam Bornhorst, Matthew Pun, Juliette Hukin, Pooja Panwalkar, Olamide Animasahun, Andrea Griesinger, Stefan M. Pfister, Richard J. Gilbertson, Mariella G. Filbin, Alexander R. Judkins, Stephen Yip, and Carl Koschmann
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Epigenomics ,endocrine system diseases ,Posterior fossa ,Bioinformatics ,Medical and Health Sciences ,Group A ,Article ,Group B ,Epigenesis, Genetic ,Histones ,Mice ,Rare Diseases ,Genetic ,Genetics ,Animals ,Humans ,Medicine ,Epigenetics ,Child ,Cancer ,business.industry ,Neurosciences ,Treatment options ,General Medicine ,Biological Sciences ,Brain Disorders ,Metabolic pathway ,Orphan Drug ,5.1 Pharmaceuticals ,Ependymoma ,Development of treatments and therapeutic interventions ,business ,Metabolic Networks and Pathways ,Epigenesis ,Biotechnology - Abstract
Childhood posterior fossa group A ependymomas (PFAs) have limited treatment options and bear dismal prognoses compared to group B ependymomas (PFBs). PFAs overexpress the oncohistone-like protein EZHIP (enhancer of Zeste homologs inhibitory protein), causing global reduction of repressive histone H3 lysine 27 trimethylation (H3K27me3), similar to the oncohistone H3K27M. Integrated metabolic analyses in patient-derived cells and tumors, single-cell RNA sequencing of tumors, and noninvasive metabolic imaging in patients demonstrated enhanced glycolysis and tricarboxylic acid (TCA) cycle metabolism in PFAs. Furthermore, high glycolytic gene expression in PFAs was associated with a poor outcome. PFAs demonstrated high EZHIP expression associated with poor prognosis and elevated activating mark histone H3 lysine 27 acetylation (H3K27ac). Genomic H3K27ac was enriched in PFAs at key glycolytic and TCA cycle–related genes including hexokinase-2 and pyruvate dehydrogenase. Similarly, mouse neuronal stem cells (NSCs) expressing wild-type EZHIP (EZHIP-WT) versus catalytically attenuated EZHIP-M406K demonstrated H3K27ac enrichment at hexokinase-2 and pyruvate dehydrogenase, accompanied by enhanced glycolysis and TCA cycle metabolism. AMPKα-2, a key component of the metabolic regulator AMP-activated protein kinase (AMPK), also showed H3K27ac enrichment in PFAs and EZHIP-WT NSCs. The AMPK activator metformin lowered EZHIP protein concentrations, increased H3K27me3, suppressed TCA cycle metabolism, and showed therapeutic efficacy in vitro and in vivo in patient-derived PFA xenografts in mice. Our data indicate that PFAs and EZHIP-WT–expressing NSCs are characterized by enhanced glycolysis and TCA cycle metabolism. Repurposing the antidiabetic drug metformin lowered pathogenic EZHIP, increased H3K27me3, and suppressed tumor growth, suggesting that targeting integrated metabolic/epigenetic pathways is a potential therapeutic strategy for treating childhood ependymomas.
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- 2021
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5. Therapeutic targeting of prenatal pontine ID1 signaling in diffuse midline glioma
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Dana Messinger, Micah K Harris, Jessica R Cummings, Chase Thomas, Tao Yang, Stefan R Sweha, Rinette Woo, Robert Siddaway, Martin Burkert, Stefanie Stallard, Tingting Qin, Brendan Mullan, Ruby Siada, Ramya Ravindran, Michael Niculcea, Abigail R Dowling, Joshua Bradin, Kevin F Ginn, Melissa A H Gener, Kathleen Dorris, Nicholas A Vitanza, Susanne V Schmidt, Jasper Spitzer, Jiang Li, Mariella G Filbin, Xuhong Cao, Maria G Castro, Pedro R Lowenstein, Rajen Mody, Arul Chinnaiyan, Pierre-Yves Desprez, Sean McAllister, Matthew D Dun, Cynthia Hawkins, Sebastian M Waszak, Sriram Venneti, Carl Koschmann, and Viveka Nand Yadav
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Cancer Research ,Oncology ,Neurology (clinical) - Abstract
Background Diffuse midline gliomas (DMG) are highly invasive brain tumors with rare survival beyond two years past diagnosis and limited understanding of the mechanism behind tumor invasion. Previous reports demonstrate upregulation of the protein ID1 with H3K27M and ACVR1 mutations in DMG, but this has not been confirmed in human tumors or therapeutically targeted. Methods Whole exome, RNA, and ChIP-sequencing was performed on the ID1 locus in DMG tissue. Scratch-assay migration and transwell invasion assays of cultured cells were performed following shRNA-mediated ID1-knockdown. In vitro and in vivo genetic and pharmacologic [cannabidiol (CBD)] inhibition of ID1 on DMG tumor growth was assessed. Patient-reported CBD dosing information was collected. Results Increased ID1 expression in human DMG and in utero electroporation (IUE) murine tumors is associated with H3K27M mutation and brainstem location. ChIP-sequencing indicates ID1 regulatory regions are epigenetically active in human H3K27M-DMG tumors and prenatal pontine cells. Higher ID1-expressing astrocyte-like DMG cells share a transcriptional program with oligo/astrocyte-precursor cells (OAPCs) from the developing human brain and demonstrate upregulation of the migration regulatory protein SPARCL1. Genetic and pharmacologic (CBD) suppression of ID1 decreases tumor cell invasion/migration and tumor growth in H3.3/H3.1K27M PPK-IUE and human DIPGXIIIP* in vivo models of pHGG. The effect of CBD on cell proliferation appears to be non-ID1 mediated. Finally, we collected patient-reported CBD treatment data, finding that a clinical trial to standardize dosing may be beneficial. Conclusions H3K27M-mediated re-activation of ID1 in DMG results in a SPARCL1+ migratory transcriptional program that is therapeutically targetable with CBD.
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- 2021
6. Molecular profiling and targeted therapy in pediatric gliomas: review and consensus recommendations
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Sarah Leary, Carl Koschmann, Amy K. Bruzek, Rameen Beroukhim, Shakti H. Ramkissoon, Theodore Nicolaides, Susan N. Chi, Bonnie Cole, Zachary Miklja, Brendan Mullan, Cassie Kline-Nunnally, Keith L. Ligon, Maryam Fouladi, Angela C. Gauthier, Sabine Mueller, Bernard L. Marini, D William Parsons, Amy L. Pasternak, Taylor Garcia, Christie Atchison, Pratiti Bandopadhayay, and Stefanie Stallard
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Cancer Research ,medicine.medical_specialty ,Consensus ,Standard of care ,medicine.medical_treatment ,Review ,Targeted therapy ,Young Adult ,Glioma ,Pediatric glioma ,Humans ,Medicine ,Profiling (information science) ,Molecular Targeted Therapy ,Child ,Intensive care medicine ,High-Grade Glioma ,Brain Neoplasms ,business.industry ,High-Throughput Nucleotide Sequencing ,Precision medicine ,medicine.disease ,Oncology ,Pediatric brain ,Neurology (clinical) ,business - Abstract
As the field of neuro-oncology makes headway in uncovering the key oncogenic drivers in pediatric glioma, the role of precision diagnostics and therapies continues to rapidly evolve with important implications for the standard of care for clinical management of these patients. Four studies at major academic centers were published in the last year outlining the clinically integrated molecular profiling and targeting of pediatric brain tumors; all 4 demonstrated the feasibility and utility of incorporating sequencing into the care of children with brain tumors, in particular for children and young adults with glioma. Based on synthesis of the data from these studies and others, we provide consensus recommendations for the integration of precision diagnostics and therapeutics into the practice of pediatric neuro-oncology. Our primary consensus recommendation is that next-generation sequencing should be routinely included in the workup of most pediatric gliomas.
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- 2019
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7. ATRX loss in glioma results in dysregulation of cell-cycle phase transition and ATM inhibitor radio-sensitization
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Tingting Qin, Brendan Mullan, Ramya Ravindran, Dana Messinger, Ruby Siada, Jessica R. Cummings, Micah Harris, Ashwath Muruganand, Kalyani Pyaram, Zachary Miklja, Mary Reiber, Taylor Garcia, Dustin Tran, Carla Danussi, Jacqueline Brosnan-Cashman, Drew Pratt, Xinyi Zhao, Alnawaz Rehemtulla, Maureen A. Sartor, Sriram Venneti, Alan K. Meeker, Jason T. Huse, Meredith A. Morgan, Pedro R. Lowenstein, Maria G. Castro, Viveka Nand Yadav, and Carl Koschmann
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Male ,X-linked Nuclear Protein ,Brain Neoplasms ,Cell Cycle ,Primary Cell Culture ,Cell Cycle Checkpoints ,Glioma ,General Biochemistry, Genetics and Molecular Biology ,Isocitrate Dehydrogenase ,Article ,Histones ,Mice, Inbred C57BL ,Mice ,Cell Line, Tumor ,Checkpoint Kinase 1 ,Mutation ,Animals ,Humans ,Female ,Neoplasm Recurrence, Local - Abstract
ATRX, a chromatin remodeler protein, is recurrently mutated in H3F3A-mutant pediatric glioblastoma (GBM) and isocitrate dehydrogenase (IDH)-mutant grade 2/3 adult glioma. Previous work has shown that ATRX-deficient GBM cells show enhanced sensitivity to irradiation, but the etiology remains unclear. We find that ATRX binds the regulatory elements of cell-cycle phase transition genes in GBM cells, and there is a marked reduction in Checkpoint Kinase 1 (CHEK1) expression with ATRX loss, leading to the early release of G2/M entry after irradiation. ATRX-deficient cells exhibit enhanced activation of master cell-cycle regulator ATM with irradiation. Addition of the ATM inhibitor AZD0156 doubles median survival in mice intracranially implanted with ATRX-deficient GBM cells, which is not seen in ATRX-wild-type controls. This study demonstrates that ATRX-deficient high-grade gliomas (HGGs) display Chk1-mediated dysregulation of cell-cycle phase transitions, which opens a window for therapies targeting this phenotype.
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- 2021
8. Therapeutic reversal of prenatal pontine ID1 signaling in DIPG
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Kevin Ginn, Pierre-Yves Desprez, Micah Harris, Cynthia Hawkins, Michael Niculcea, Chase Thomas, Maria G. Castro, Sriram Venneti, Tao Yang, Melissa Gener, Cummings, Xuhong Cao, Sandra S. McAllister, Stefanie Stallard, Messinger D, Jasper Spitzer, Carl Koschmann, Mariella G. Filbin, Chinnaiyan A, Tingting Qin, Pedro R. Lowenstein, Sebastian M. Waszak, Kathleen Dorris, Jiang Li, Viveka Yadav, Burkert M, Ramya Ravindran, Robert Siddaway, Rinette Woo, Susanne V. Schmidt, Ruby Siada, Rajen Mody, Brendan Mullan, and Nicholas A Vitanza
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medicine.anatomical_structure ,Downregulation and upregulation ,Precursor cell ,Glioma ,Cancer research ,Brain tumor ,medicine ,Cell migration ,SPARCL1 ,Biology ,medicine.disease ,Transcription factor ,Astrocyte - Abstract
Diffuse intrinsic pontine glioma (DIPG) is a highly aggressive brain tumor with rare survival beyond two years. This poor prognosis is largely due to the tumor’s highly infiltrative and invasive nature. Previous reports demonstrate upregulation of the transcription factor ID1 with H3K27M and ACVR1 mutations, but this has not been confirmed in human tumors or therapeutically targeted. We developed an in utero electroporation (IUE) murine H3K27M-driven tumor model, which demonstrates increased ID1 expression in H3K27M- and ACVR1-mutated tumor cells. In human tumors, elevated ID1 expression is associated with H3K27M/ACVR1-mutation, brainstem location, and reduced survival. The ID1 promoter demonstrates a similar active epigenetic state in H3K27M tumor cells and murine prenatal hindbrain cells. In the developing human brain, ID1 is expressed highest in oligo/astrocyte-precursor cells (OAPCs). These ID1+/SPARCL1+ cells share a transcriptional program with astrocyte-like (AC-like) DIPG cells, and demonstrate upregulation of gene sets involved with regulation of cell migration. Both genetic and pharmacologic [cannabidiol (CBD)] suppression of ID1 results in decreased DIPG cell invasion/migration in vitro and invasion/tumor growth in multiple in vivo models. CBD reduces proliferation through reactive oxygen species (ROS) production at low micromolar concentrations, which we found to be achievable in the murine brainstem. Further, pediatric high-grade glioma patients treated off-trial with CBD (n=15) demonstrate tumor ID1 reduction and improved overall survival compared to historical controls. Our study identifies that ID1 is upregulated in DIPG through reactivation of a developmental OAPC transcriptional state, and ID1-driven invasiveness of DIPG is therapeutically targetable with CBD.One Sentence SummaryThe transcription factor ID1 is upregulated in a subset of DIPG tumor cells, and ID1-driven invasiveness is therapeutically targetable with CBD.
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- 2021
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9. ATRX Loss in Glioma Results in Epigenetic Dysregulation of Cell Cycle Phase Transition
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Micah Harris, Brendan Mullan, Jacqueline A. Brosnan-Cashman, Carla Danussi, Taylor Garcia, Carl Koschmann, Alnawaz Rehemtulla, Mary Reiber, Zachary Miklja, Sriram Venneti, Kalyani Pyaram, Xinyi Zhao, Tingting Qin, Jessica R. Cummings, Drew Pratt, Dustin Tran, Maureen A. Sartor, Ashwath Muruganand, Ramya Ravindran, Meredith A. Morgan, Alan K. Meeker, Viveka Nand Yadav, Maria G. Castro, Pedro R. Lowenstein, Ruby Siada, and Jason T. Huse
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Chemistry ,Glioma ,Cancer research ,medicine ,Cell cycle phase transition ,Epigenetics ,CHEK1 ,Cell cycle ,medicine.disease ,ATRX ,Chromatin ,Cell cycle phase - Abstract
ATRX, a chromatin remodeler protein, is recurrently mutated in H3F3A-mutant pediatric glioblastoma (GBM) and IDH-mutant grade 2/3 adult glioma. Previous work has shown that ATRX-deficient GBM cells show enhanced sensitivity to irradiation, but the etiology remains unclear. We found that ATRX binds regulatory elements of cell cycle phase transition genes in GBM cells, and there is a marked reduction in Checkpoint Kinase 1 (CHEK1) expression with ATRX loss, leading to early release of G2/M entry after irradiation. ATRX-deficient cells exhibit enhanced activation of master cell cycle regulator ATM with irradiation. Addition of the ATM inhibitor AZD0156 doubles median survival in mice intra-cranially implanted with ATRX-deficient GBM cells, which is not seen in ATRX-wildtype controls. This study demonstrates that ATRX-deficient high-grade gliomas (HGGs) display epigenetic dysregulation of cell cycle phase transitions, which opens a new window for therapies targeting this unique phenotype.
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- 2021
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10. Clinical efficacy and predictive biomarkers of ONC201 in H3 K27M-mutant diffuse midline glioma
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Carl Koschmann, Abed Rahman Kawakibi, Rohinton Tarapore, Sharon Gardner, Chase Thomas, Rodrigo Cartaxo, Viveka Yadav, Andrew Chi, Sylvia Kurz, Patrick Wen, Isabel Arrillaga, Tracy Batchelor, Nicholas Butowski, Ashley Sumrall, Nicole Shonka, Rebecca Harrison, John De Groot, Minesh Mehta, Yazmin Odia, Matthew Hall, Doured Daghistani, Timothy Cloughesy, Benjamin Ellingson, Michelle Kim, Yoshie Umemura, Hugh Garton, Andrea Franson, Patricia Robertson, Jonathan Schwartz, Bernard Marini, Manjunath Pai, Timothy Phoenix, Sunjong Ji, Evan Cantor, Zachary Miklja, Brendan Mullan, Amy Bruzek, Ruby Siada, Jessica Cummings, Stefanie Stallard, Kyle Wierzbicki, Alyssa Paul, Ian Wolfe, Matthew Dun, Jason Cain, Li Jiang, Mariella Filbin, Pankaj Vats, Chandan Kumar-Sinha, Rajen Mody, Arul Chinnaiyan, Drew Pratt, Sriram Venneti, Guangrong Lu, Sabine Mueller, Adam Resnick, Javad Nazarian, Sebastian Waszak, and Joshua Allen
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Patients with diffuse midline glioma (DMG) harboring H3 K27M mutation have no proven therapies beyond radiation. ONC201, a DRD2 antagonist and mitochondrial ClpP agonist, has induced early responses in patients with H3 K27M-mutant DMG. We performed an integrated pre-clinical and clinical assessment of ONC201 treatment, in order to define response rates in H3 K27M-mutant DMG patients and to clarify predictors of response. ONC201 was effective in murine H3 K27M-mutant gliomas with excellent CNS penetration and survival benefit. H3 K27M-mutant DMG patients treated with ONC201 on active clinical trials (n=50) showed significant survival benefit in recurrent and non-recurrent settings, with multiple sustained responses. Tumor sequencing from treated patients demonstrates an EGFR/FOXG1-driven telencephalic gene regulatory network that imparts a critical resistance phenotype to ONC201. Genetic and pharmacologic knockdown of EGFR in H3 K27M-mutant cell cultures results in improved sensitivity to ONC201 and reduced FOXG1 enhancer binding, suggesting possible future combinatorial opportunities.
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- 2020
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11. Clinically Integrated Sequencing Alters Therapy in Children and Young Adults With High-Risk Glial Brain Tumors
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Kathryn McFadden, Arul M. Chinnaiyan, Andrew H. Zureick, Bailey Anderson, Sriram Venneti, Lili Zhao, Robert J. Lonigro, Karin M. Muraszko, Bernard L. Marini, Brendan Mullan, Patricia L. Robertson, Xuhong Cao, Pankaj Vats, Marcin Cieslik, Rajen Mody, Carl Koschmann, Jessica Everett, Paul E. McKeever, Sandra Camelo-Piragua, Yi-Mi Wu, Marcia Leonard, Hugh J. L. Garton, Cormac O. Maher, Andrew P. Lieberman, Katayoon Kasaian, Kevin Frank, John R. Prensner, Dan R. Robinson, and Chandan Kumar-Sinha
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0301 basic medicine ,Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,Genetic counseling ,Brain tumor ,Consecutive case series ,Precision medicine ,medicine.disease ,Article ,Germline ,Transcriptome ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Internal medicine ,medicine ,Young adult ,business ,Exome - Abstract
Purpose Brain tumors have become the leading cause of cancer-related mortality in young patients. Novel effective therapies on the basis of the unique biology of each tumor are urgently needed. The goal of this study was to evaluate the feasibility, utility, and clinical impact of integrative clinical sequencing and genetic counseling in children and young adults with high-risk brain tumors. Patients and Methods Fifty-two children and young adults with brain tumors designated by the treating neuro-oncologist to be high risk (> 25% chance for treatment failure; mean age, 10.2 years; range, 0 to 39 years) were enrolled in a prospective, observational, consecutive case series, in which participants underwent integrative clinical exome (tumor and germline DNA) and transcriptome (tumor RNA) sequencing and genetic counseling. Results were discussed in a multi-institutional brain tumor precision medicine teleconference. Results Sequencing revealed a potentially actionable germline or tumor alteration in 25 (63%) of 40 tumors with adequate tissue, of which 21 (53%) resulted in an impact on treatment or change of diagnosis. Platelet-derived growth factor receptor or fibroblast growth factor receptor pathway alterations were seen in nine of 20 (45%) glial tumors. Eight (20%) sequenced tumors harbored an oncogenic fusion isolated on RNA sequencing. Seventeen of 20 patients (85%) with glial tumors were found to have a potentially actionable result, which resulted in change of therapy in 14 (70%) patients. Patients with recurrent brain tumors receiving targeted therapy had a median progression-free survival (from time on therapy) of 4 months. Conclusion Selection of personalized agents for children and young adults with high-risk brain tumors on the basis of integrative clinical sequencing is feasible and resulted in a change in therapy in more than two thirds of children and young adults with high-risk glial tumors.
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- 2018
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12. TAMI-79. THERAPEUTIC REVERSAL OF PRENATAL PONTINE ID1 SIGNALING IN DIPG
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Carl Koschmann, Micah Harris, Sriram Venneti, Sean D. McAllister, Kevin Ginn, Kathleen Dorris, Viveka Nand Yadav, Jasper Spitzer, Mariella G Filbin, Rajen Mody, Stefanie Stallard, Brendan Mullan, Dana Messinger, Pedro R. Lowenstein, Cynthia Hawkins, Jessica R. Cummings, Jiang Li, Nicholas A Vitanza, Ruby Siada, Tao Yang, Sebastian M Waszak, Melissa Gener, Tingting Qin, Robert Siddaway, Ramya Ravindran, Chase Thomas, Xuhong Cao, Maria G. Castro, Martin Burkert, Susanne Schmidt, Pierre Yves Desprez, Arul M. Chinnaiyan, Michael Niculcea, and Rinette Woo
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Cancer Research ,business.industry ,Treatment outcome ,Tumor cells ,Prenatal care ,Brain tissue ,26th Annual Meeting & Education Day of the Society for Neuro-Oncology ,Brain tumor childhood ,Pons ,Oncology ,Medicine ,Tumor growth ,Neurology (clinical) ,business ,Neuroscience ,Chromatin Immunoprecipitation Sequencing - Abstract
Diffuse intrinsic pontine glioma (DIPG) is a highly aggressive pediatric brain tumor with rare survival beyond two years. This poor prognosis is largely due to the tumor's highly infiltrative and invasive nature. Nearly 80% of DMGs harbor K27M mutation in the genes encoding histone H3.1 (H3F3A) or H3.3 (HISTIH3B), often with concurrent ACVR1 mutation. Inhibitor of DNA-binding (ID) proteins are key transcriptional regulators of genes involved in lineage commitment and are associated with invasiveness and poor clinical outcomes in multiple human cancers. Introduction of H3K27M and ACVR1 mutations increase ID1 expression in cultured astrocytes, but this has not been confirmed in human tumors or targeted therapeutically. We developed an in-utero electroporation (IUE) murine H3K27M-driven tumor model, which demonstrates increased ID1 expression in H3K27M- and ACVR1-mutated tumor cells. Exome and transcriptome sequencing analysis of multi-focal DMG tumors (n=52) and normal brain tissue revealed that increased ID1 expression is associated with H3K27M/ACVR1-mutation and brainstem location, and correlates with poor survival in patients. ChIP-sequencing for H3K27ac and H3K27me3 in multiple DMG tumors (n=5) revealed that the ID1 gene is epigenetically active, which matches the epigenetic state of murine prenatal hindbrain cells. Higher ID1-expressing astrocyte-like DIPG cells share a similar transcriptional program with ID1+/SPARCL1+ positive oligo/astrocyte-precursor (OAPC) cells from the developing human brain and demonstrate upregulation of gene sets involved in regulation of cell migration. Both genetic and pharmacologic [cannabidiol (CBD)] suppression of ID1 result in decreased DIPG cell invasion/migration in vitro and invasion/tumor growth in multiple in vivo models. Mechanistically, CBD reduces proliferation through production of reactive oxygen species. Further, DIPG patients treated off-trial with CBD (n=15) displayed reduced ID1 tumor expression and improved overall survival. In summary, ID1 is upregulated in DIPG through K27M-mediated epigenetic reactivation of a developmental OAPC-like transcriptional state, and ID1-driven invasiveness of DIPG is therapeutically targetable with CBD.
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- 2021
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13. DIPG-59. UPREGULATION OF PRENATAL PONTINE ID1 SIGNALING IN DIPG
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Micah Harris, Cynthia Hawkins, Sriram Venneti, Ruby Siada, Tingting Qin, Sean D. McAllister, Arul M. Chinnaiyan, Carl Koschmann, Xuhong Cao, Pierre Yves Desprez, Ramya Ravindran, Maria G. Castro, Rajen Mody, Robert Siddaway, Rinette Woo, Pedro R. Lowenstein, Brendan Mullan, Stefanie Stallard, Viveka Nand Yadav, Zachary Miklja, and Amy L. Pasternak
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Cancer Research ,business.industry ,Diffuse Midline Glioma/DIPG ,Tumor Cell Invasion ,Brain tumor childhood ,Oncology ,Downregulation and upregulation ,Cancer research ,AcademicSubjects/MED00300 ,Medicine ,AcademicSubjects/MED00310 ,Neurology (clinical) ,business ,Chromatin Immunoprecipitation Sequencing - Abstract
BACKGROUND Diffuse intrinsic pontine gliomas (DIPGs) are lethal pediatric brain tumors with no curative therapies. Inhibitor of DNA binding (ID) proteins are key regulators of gene differentiation during embryogenesis. Previous work has shown that H3F3A and ACVR1 mutations increase ID1 expression in cultured astrocytes, but this has not been validated in human DIPG, nor has the regulation and targetability of ID1 been explored in DIPG. RESULTS Analysis of post-mortem tissue and multiple human datasets showed ID1 to be elevated in DIPG, and to correlate with reduced survival. In a multi-focal autopsy of a DIPG case, we also found ID1 expression to be heterogeneous and to correlate with tumor invasion. Chromatin immunoprecipitation qPCR (ChIP-qPCR) revealed elevated H3K27ac and low H3K27me3 at ID1 regulatory regions (enhancers/promoters) in DIPG tissue compared to normal brain, regardless of H3 or ACVR1 mutation status. Analysis of publicly-available ISH and ChIP-sequencing data of developing murine brains revealed H3K27ac at ID1 enhancers to be elevated in the prenatal hindbrain compared to prenatal forebrain and midbrain, and all postnatal brain regions. ID1 shRNA-mediated knockdown of primary human H3K27M DIPG cells (DIPG007) significantly reduced invasion and migration. We also treated DIPG007 cells with cannabidiol (CBD) and found reduced viability at clinically relevant dosing (IC50=2.4 uM) with dose-dependent reduction in ID1 protein. CONCLUSIONS These findings indicate that a multifactorial (genetic and regionally-based) epigenetic upregulation of ID1 drives DIPG invasiveness and is targetable with CBD. ID1 knockdown and CBD treatment experiments in murine models of DIPG are ongoing.
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- 2020
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14. CTNI-17. CLINICAL EFFICACY AND PREDICTIVE BIOMARKERS OF ONC201 IN H3 K27M-MUTANT DIFFUSE MIDLINE GLIOMA
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Pankaj Vats, Alyssa Paul, Yoshie Umemura, Timothy F. Cloughesy, Chase Thomas, Nicole Shonka, Daniel Martinez, Isabel Arrillaga-Romany, Ian Wolfe, Benjamin M. Ellingson, Arul M. Chinnaiyan, Evan Cantor, Zachary Miklja, John de Groot, Abed Rahman Kawakibi, Andrew S. Chi, Chandan Kumar-Sinha, Rebecca Harrison, Adam C. Resnick, Nicholas Butowski, Guangrong Lu, Minesh P. Mehta, Joshua E. Allen, Ashley Sumrall, Matthew Hall, Rajen Mody, Carl Koschmann, Mariella G. Filbin, Ruby Siada, Sylvia Kurz, Rohinton Tarapore, Sebastian M Waszak, Doured Daghistani, Hugh J. L. Garton, Viveka Nand Yadav, Javad Nazarian, Amy K. Bruzek, Patrick Y. Wen, Sabine Mueller, Tracy T. Batchelor, Sharon Gardner, Jessica R. Cummings, Sriram Venneti, Jonathan Schwartz, Brendan Mullan, Patricia L. Robertson, Li Jiang, Andrea Franson, Yazmin Odia, and Rodrigo Cartaxo
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Drd2 gene ,Cancer Research ,Pathology ,medicine.medical_specialty ,business.industry ,Mutant ,Clinical Trials: Non-Immunologic ,medicine.disease ,Oncology ,Circulating tumor DNA ,Glioma ,Troponin I ,medicine ,Neurology (clinical) ,Clinical efficacy ,business ,Predictive biomarker - Abstract
Patients with diffuse midline glioma (DMG) harboring H3 K27M mutation rarely survive longer than two years and have no proven therapies following first-line radiation. ONC201, a bitopic DRD2 antagonist and allosteric ClpP agonist, has shown encouraging efficacy in early phase studies in H3 K27M-mutant DMG. In order to define response rates in H3 K27M DMG patients and to clarify the genomic, anatomic and molecular predictors of response, we performed an integrated pre-clinical and clinical analysis of ONC201 treatment. ONC201 was effective in intra-uterine electroporation (IUE)-generated H3 K27M-mutant murine glioma models with excellent CNS penetration and survival benefit. Patients with H3 K27M-mutant DMG treated with ONC201 on active clinical trials (n=50, 27 thalamic, 23 brainstem) showed an overall survival (OS) of 28.1 (range: 5.9–105) months from diagnosis (enrollment by 4/29/19, data cut-off 12/28/19), compared to historical median OS of 12 months. Median OS for non-recurrent patients has not been reached (n=16, median follow-up: 16.8 from diagnosis). For non-recurrent thalamic patients (n=8), median PFS is 20.1 (range: 9.3–27.6) months from diagnosis (median time on drug: 14.5 months). Best response for thalamic patients by RANO: 1 CR, 5 PR, 7 SD, 8 PD, 6 not reported. Decreased H3 K27M cell-free tumor DNA in plasma and CSF at 6 months correlated with long-term response. Baseline tumor gene expression profiling in patients treated with ONC201 (n=14) identified EGFR and the cortical developmental transcription factor FOXG1 as the strongest biomarkers of radiographic response to ONC201. Analysis of 541 ONC201-treated human cancer cell lines from DepMap, provided evidence for an EGFR-dependent ONC201 resistance mechanism. Analysis of 38 glioma cell lines further supports FOXG1 as a glioma-specific predictive biomarker of ONC201 response. The unprecedented survival results and radiographic responses to ONC201 in H3K27M DMG make a compelling case for later phase and combinatorial studies.
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- 2020
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15. EPCT-07. ID1 IS A KEY TRANSCRIPTIONAL REGULATOR OF DIPG INVASION AND IS TARGETABLE WITH CANNABIDIOL
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Brendan Mullan, Jessica R. Cummings, Pierre Yves Desprez, Micah Harris, Viveka Nand Yadav, Sriram Venneti, Sean D. McAllister, Maria G. Castro, Arul M. Chinnaiyan, Ramya Ravindran, Cynthia Hawkins, Michael Niculcea, Chase Thomas, Carl Koschmann, Rajen Mody, Tingting Qin, Robert Siddaway, Pedro R. Lowenstein, Stefanie Stallard, Xuhong Cao, Rinette Woo, and Ruby Siada
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Cancer Research ,Brain tumor childhood ,Biology ,medicine.disease_cause ,Translational/Early Phase Clinical Trials ,Oncology ,ACVR1 Gene ,Downregulation and upregulation ,medicine ,Transcriptional regulation ,Cancer research ,AcademicSubjects/MED00300 ,AcademicSubjects/MED00310 ,Neurology (clinical) ,Carcinogenesis ,Cannabidiol ,medicine.drug - Abstract
Diffuse intrinsic pontine gliomas (DIPGs) are lethal pediatric brain tumors with no effective therapies beyond radiation. The highly invasive nature of DIPG is key to its aggressive phenotype, but the factors and mechanisms contributing to this aggressive invasion are unknown. Inhibitor of DNA binding (ID) proteins, key regulators of lineage commitment during embryogenesis, are implicated in tumorigenesis in multiple human solid tumors. Prior work showed that recurrent H3F3A and ACVR1 mutations increase ID1 expression in cultured astrocytes. However, the impact and targetability of ID1 have not been explored in human DIPG. Exome and transcriptome sequencing analyses of multi-focal DIPG tumors and normal brain tissue from autopsy (n=52) revealed that ID1 expression is significantly elevated in DIPG samples. Higher ID1 expression correlates with reduced survival in DIPG patients and increased regional invasion in multi-focal autopsy samples. Analyses of developing mouse brain RNA/ChIP-Seq data revealed high ID1 expression and H3K27ac promoter binding in prenatal hindbrain compared to all other prenatal and postnatal brain regions. ChIP-qPCR for H3K27ac and H3K27me3 revealed that ID1 gene regulatory regions are epigenetically poised for upregulation in DIPG tissues compared to normal brain, regardless of H3/ACVR1 mutational status. These data support that the developing pons is regionally poised for ID1 activation. Genetic (shRNA) ID1 knockdown of primary human H3.3K27M-DIPG cells (DIPG007) resulted in significantly reduced invasion/migration and significantly improved survival of K27M-DIPG mice. Knockdown of ID1 in DIPG cells also resulted in down-regulation of the WNK1-NKCC1 pathway, which regulates tumor cell electrolyte homeostasis and migration. Finally, treatment of DIPG007 cells with cannabidiol (CBD) reduced ID1 levels, viability of DIPG cells and significantly improved survival of K27M-DIPG mice. In summary, our findings indicate that multifactorial (genetic and regional) epigenetic upregulation of ID1 drives DIPG invasiveness; and that targeting ID1 with CBD could potentially be an effective therapy for DIPG.
- Published
- 2021
16. The Sociology of Inequality and the Rise of Neo-Inequality
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Brendan Mullan
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Economic growth ,050402 sociology ,Inequality ,Poverty ,media_common.quotation_subject ,05 social sciences ,General Social Sciences ,Neoclassical economics ,0506 political science ,0504 sociology ,050602 political science & public administration ,Economics ,Social inequality ,media_common - Abstract
Sociologists’ conventional approaches to understanding inequality and poverty do not adequately capture the causes, extent, and consequences of new forms of inequality that have emerged in the late...
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- 2016
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17. CBIO-03. ATRX LOSS IN GLIOMA RESULTS IN EPIGENETIC DYSREGULATION OF CELL CYCLE PHASE TRANSITION
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Carl Koschmann, Brendan Mullan, Viveka Nand Yadav, Jackie Brosnan-Cashman, Kalyani Pyaram, Drew Pratt, Ruby Siada, Maureen A. Sartor, Alan K. Meeker, Ramya Ravindran, Dustin Tran, Ashwat Muruganand, Taylor Garcia, Tingting Qin, Xinyi Zhao, Jason T. Huse, Maria G. Castro, Pedro R. Lowenstein, Mary Reiber, Meredith A. Morgan, Sriram Venneti, Alnawaz Rehemtulla, Chase Thomas, Carla Danussi, Zachary Miklja, and Micah Harris
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Cancer Research ,Mutation ,Chemistry ,Cell cycle ,medicine.disease ,medicine.disease_cause ,Phenotype ,Chromatin ,Oncology ,Glioma ,medicine ,Cell cycle phase transition ,Cancer research ,Neurology (clinical) ,Epigenetics ,Cell Biology (Cell Cycle Regulation, DNA Repair/Modulation) ,ATRX - Abstract
Gliomas are a leading cause of cancer mortality in children and adults, and new targeted therapies are desperately needed. ATRX is a chromatin remodeling protein that is recurrently mutated in H3F3A-mutant pediatric glioblastoma (GBM) and IDH-mutant grade 2/3 adult glioma. We previously showed that loss of ATRX in glioma results in tumor growth and additional tumor mutations. However, the mechanism driving these phenotypes has not been fully established. We found that in ChIP-Seq/ChIP-qPCR of mouse neuronal precursor cells (NPCs) and GBM cells with isogenic ATRX loss, ATRX binds regulatory elements for cell cycle phase transition gene sets, and ATRX loss subsequently results in reduced expression. Furthermore, human GBM cells with ATRX knock-out demonstrate higher rates of cells in S and G2/M phases, with clusters of cells demonstrating reduced expression of cell cycle regulatory gene sets by single-cell sequencing (scSeq) analysis. In human and mouse GBM in vitro models, ATRX-deficient cells exhibit a seven-fold increase in mitotic index at 16 hours after sub-lethal radiation and enhanced activation of the master cell cycle regulator ATM with radiation. Treatment of ATRX-deficient gliomas with ATM inhibitors results in a selective increase in dysfunctional cell cycling and increased radio-sensitization in ATRX-deficient glioma cells. Using an ATM-luciferase reporter in orthotopically-implanted human GBM cells, both AZD0156 and AZD1390 demonstrate in vivo pathway inhibition. Mice intra-cranially implanted with ATRX-deficient GBM cells demonstrate a doubling of median survival compared to radiated controls (p=0.0018) when treated with AZD0156 combined with radiation; this is not seen in ATRX-sufficient models. This study demonstrates that ATRX-deficient high-grade gliomas display epigenetic dysregulation of cell cycle phase transitions, which opens a new window for therapies targeting this unique phenotype.
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- 2020
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18. TAMI-29. MULTIFACTORIAL UPREGULATION OF ID1 DRIVES DIPG INVASIVENESS AND IS THERAPEUTICALLY TARGETABLE
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Arul M. Chinnaiyan, Ramya Ravindran, Micah Harris, Pedro R. Lowenstein, Tingting Qin, Carl Koschmann, Viveka Nand Yadav, Jessica R. Cummings, Zachary Miklja, Rinette Woo, Robert Siddaway, Sriram Venneti, Rajen Mody, Maria G. Castro, Sean D. McAllister, Cynthia Hawkins, Stefanie Stallard, Xuhong Cao, Brendan Mullan, Pierre Yves Desprez, Ruby Siada, and Amy L. Pasternak
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Cancer Research ,Oncology ,Downregulation and upregulation ,Cancer research ,Tumor Microenvironment/Angiogenesis/Metabolism/Invasion ,Neurology (clinical) - Abstract
Diffuse intrinsic pontine gliomas (DIPGs) are lethal brain tumors with no effective therapies other than radiation. Inhibitor of DNA binding (ID) proteins, key regulators of lineage commitment during embryogenesis, are implicated in tumorigenesis in multiple human cancers. Prior work showed that recurrent H3F3A and ACVR1 mutations increase ID1 expression in cultured astrocytes. However, this has not been validated in human DIPG. The regulation and targetability of ID1 in DIPG has not been explored either. Exome and transcriptome sequencing analysis of multi-focal DIPG tumors and normal brain tissue from autopsy (n=52) revealed that ID1 expression is significantly elevated in DIPG tissues. Higher ID1 expression correlates with reduced survival in DIPG patients and increased regional invasion in multi-focal autopsy samples. Analyses of developing mouse brain RNA/ChiP-Seq data revealed high ID1 expression and H3K27ac promoter binding in prenatal hind brain compared to all other prenatal and postnatal brain regions. ChIP-qPCR for H3K27ac and H3K27me3 revealed that ID1 gene regulatory regions are epigenetically poised for upregulation in DIPG tissues compared to normal brain, regardless of H3/ACVR1 mutational status. These data support that the developing pons is regionally poised for ID1 activation. Genetic (shRNA) ID1 knockdown in primary human H3.3K27M-DIPG cells (DIPG007) resulted in significantly reduced invasion and migration in vitro. Additionally, DIPG-ID1-KO cells showed improved sensitivity to radiation therapy. Phospho-kinase array analysis of DIPG cells revealed that Akt and WNK1 activity were significantly downregulated upon ID1 knockdown, which was previously shown in lung tumors. Treatment of DIPG007 cells with cannabidiol (CBD) reduced ID1 expression levels and viability/proliferation of DIPG cells in vitro. ID1 knockdown and CBD treatment studies in vivo are ongoing. In summary, our findings indicate that multifactorial (genetic and regional) epigenetic upregulation of ID1 drives DIPG invasiveness and targeting ID1 using CBD may be a potential strategy for the treatment of DIPGs.
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- 2020
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19. CSF H3F3A K27M circulating tumor DNA copy number quantifies tumor growth and in vitro treatment response
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Ruby Siada, Rintaro Hashizume, Sriram Venneti, Masha G. Savelieff, Bailey Anderson, Hugh J. L. Garton, Benjamin H. Singer, Stefanie Stallard, Zachary Miklja, Karin M. Muraszko, Carl Koschmann, Angel M. Carcaboso, Kaitlin Q. McMurray, Kyle Wierzbicki, Jason Heth, Brendan Mullan, Patricia L. Robertson, Rajen Mody, Amy K. Bruzek, and Taylor Garcia
- Subjects
Male ,Treatment response ,medicine.medical_specialty ,Neurology ,In Vitro Techniques ,Adolescent ,DNA Copy Number Variations ,lcsh:RC346-429 ,Pathology and Forensic Medicine ,Circulating Tumor DNA ,Histones ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Text mining ,Methionine ,medicine ,Humans ,Tumor growth ,Child ,Letter to the Editor ,lcsh:Neurology. Diseases of the nervous system ,Cell Proliferation ,medicine.diagnostic_test ,business.industry ,Cell growth ,Brain Neoplasms ,Lysine ,Magnetic resonance imaging ,Glioma ,Magnetic Resonance Imaging ,In vitro ,030220 oncology & carcinogenesis ,Mutation ,Cancer research ,Female ,Neurology (clinical) ,business ,030217 neurology & neurosurgery - Published
- 2018
20. DIPG-38. ID1 EXPRESSION CORRELATES WITH H3F3A K27M MUTATION AND EXTRA-PONTINE INVASION IN DIPG
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Xuhong Cao, Cynthia Hawkins, Bailey Anderson, Stefanie Stallard, Brendan Mullan, Katayoon Kasaian, Sriram Venneti, Rajen Mody, Maria G. Castro, Pedro R. Lowenstein, Taylor Garcia, Zachary Miklja, Carl Koschmann, Daniel Zamler, Arul M. Chinnaiyan, Robert Siddaway, and Shawn L. Hervey-Jumper
- Subjects
Solid tumour ,Cancer Research ,K27m mutation ,Tumor size ,business.industry ,medicine.disease ,Abstracts ,Oncology ,Glioma ,medicine ,Cancer research ,Neurology (clinical) ,business ,Basic Helix-Loop-Helix Transcription Factors - Abstract
ID1 regulates transcription by interacting with bHLH transcription factors and previous work has shown that over-expression of the recurrent DIPG H3F3A K27M and ACVR1 mutations in cultured astrocytes lead to an increase in ID1 expression; this has not been validated in human DIPG. DNA (exome)/RNA sequencing of 34 DIPGs and 17 normal samples (SickKids) revealed that ID1 expression was significantly increased in tumor as compared to normal (p=0.001). ID1 expression was significantly higher in H3F3A K27M-mutated tumors as compared to normal (p=0.003), but not in ACVR1-mutated tumors. This was confirmed in an analysis of pediatric high-grade gliomas (PedcBioPortal) where ID1 expression was increased in H3F3A K27M-mutated tumors as compared to H3 wildtype (p=0.0055, n=189), but not in ACVR1-mutated tumors as compared to ACVR1 wildtype (p=0.1178, n=114). In an additional patient with DIPG at autopsy, multi-focal sequencing revealed clonal mutations in HIST1H3B K27M and ACVR1 and ID1 expression correlated with tumor size and cerebellar invasion. We identified several genes whose expression in pediatric HGG correlated with that of ID1 and which have been implicated in invasion and/or metastasis in various solid tumors. ChipSeq revealed reduced K27 me3 and elevated K27 acetylation at the ID1 locus in multiple K27M-mutant DIPG cell lines, pointing to an epigenetic control of this phenotype in H3F3A K27M-mutated DIPGs. Based on these data, we propose that epigenetically controlled upregulation of ID1 promotes DIPG invasion in H3F3A K27M-mutated DIPG and represents an optimal therapeutic target.
- Published
- 2018
21. PDCT-14. CLINICALLY INTEGRATED SEQUENCING SIGNIFICANTLY ALTERS THERAPY IN CHILDREN AND YOUNG ADULTS WITH HIGH-RISK GLIAL BRAIN TUMORS
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Bernard L. Marini, Kathryn McFadden, Chandan Kumar, Pankaj Vats, Bailey Anderson, Andrew H. Zureick, Katayoon Kasaian, Karin M. Muraszko, Robert J. Lonigro, Andrew P. Lieberman, Hugh J. L. Garton, Yi-Mi Wu, Arul M. Chinnaiyan, Marcia Leonard, Kevin Frank, Sriram Vennneti, Marcin Cieslik, Cormac O. Maher, Daniel H. Robinson, Carl Koschmann, Brendan Mullan, Paul Mc Keever, Patricia L. Robertson, Jessica Everett, Rajen Mody, John R. Prensner, Xuhong Cao, and Sandra Camelo-Piragua
- Subjects
Cancer Research ,Pathology ,medicine.medical_specialty ,Abstracts ,Text mining ,Oncology ,business.industry ,Medicine ,Neurology (clinical) ,Young adult ,business ,Bioinformatics - Abstract
Brain tumors have become the leading cause of cancer-related mortality in young patients. The role of routine sequencing in younger patients with brain tumors is not fully established, and it remains unclear which patient patients will benefit most from the integration of germline/tumor sequencing into routine pediatric neuro-oncology care. The goal of this study was to evaluate the feasibility and utility of DNA and RNA sequencing of children and adolescents with high-risk brain tumors, as well as to document the clinical utility of targeted therapies. Fifty-two children and young adults with brain tumors designated by treating neuro-oncologist to be high risk enrolled in a prospective, observational, consecutive case-series, in which participants underwent integrative clinical exome (tumor and germline DNA) and transcriptome (tumor RNA) sequencing and genetic counseling. Results were discussed in a multi-institutional brain tumor precision medicine teleconference using a platform (“CNS TAP”) to score targeted agents by their pre-clinical, clinical and pharmacologic properties in the selection of targeted therapies for brain tumors. Sequencing revealed a potentially actionable germline or tumor alterations in 25 (63%) of 40 tumors with adequate tissue, of which 21 (53%) resulted in an impact on treatment or change of diagnosis. Eight (20%) of sequenced tumors harbored an oncogenic fusion isolated on RNA sequencing. Seventeen of 20 patients (85%) with glial tumors were found to have a potentially actionable result, which resulted in change of therapy in 14 (70%) patients. Six (15%) patients who underwent therapy changes had potential clinical benefit (partial response or stable disease greater than 6 months on therapy). Selection of personalized agents for children and young adults with high risk brain tumors based on integrative clinical sequencing is feasible and resulted in a change in therapy in over two-thirds of children and young adults with high-risk glial tumors.
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- 2017
22. Blood brain barrier-adapted precision medicine therapy for pediatric brain tumors
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Adam L. Green, Erin L. McKean, Rishi Lulla, Joanne Wang, Carl Koschmann, Miriam Bornhorst, Arul M. Chinnaiyan, Andrew H. Zureick, Sandra Camelo-Piragua, Yi-Mi Wu, Marcia Leonard, Cormac O. Maher, Julia Brown, Katie Dorris, Larry Junck, Rajen Mody, Hugh J. L. Garton, Natasha Pillay Smiley, Bernard L. Marini, Pankaj Vats, Jean Mulcahy-Levy, Angela C. Gauthier, Lina Shao, Xuhong Cao, Chandan Kumar, Daphne A. Haas-Kogan, Andrew P. Lieberman, Sriram Venneti, Lindsey M. Hoffman, Paul E. McKeever, Katayoon Kasaian, Shawn L. Hervey-Jumper, Brendan Mullan, Benjamin C. Chandler, Lydia L. Benitez, Patricia L. Robertson, Nicholas A Vitanza, Jonathan Schwartz, Robert J. Lonigro, Bailey Anderson, Karin M. Muraszko, Kathryn McFadden, Dan R. Robinson, Noah A. Brown, Ralph Salloum, and Joseph R Linzey
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0301 basic medicine ,Drug ,Oncology ,medicine.medical_specialty ,media_common.quotation_subject ,Antineoplastic Agents ,Pharmacology ,Blood–brain barrier ,Patient care ,Article ,03 medical and health sciences ,0302 clinical medicine ,Predictive Value of Tests ,Physiology (medical) ,Internal medicine ,Partial response ,medicine ,Humans ,Molecular Targeted Therapy ,Precision Medicine ,Child ,media_common ,business.industry ,Brain Neoplasms ,Patient Selection ,Biochemistry (medical) ,Public Health, Environmental and Occupational Health ,Treatment options ,General Medicine ,Precision medicine ,Gene Expression Regulation, Neoplastic ,Cns malignancy ,030104 developmental biology ,medicine.anatomical_structure ,Pediatric brain ,Blood-Brain Barrier ,030220 oncology & carcinogenesis ,business - Abstract
Targeted chemotherapeutics provide a promising new treatment option in neuro-oncology. The ability of these compounds to penetrate the blood-brain barrier is crucial for their successful incorporation into patient care. “CNS Targeted Agent Prediction” (CNS-TAP) is a multi-institutional and multidisciplinary translational program established at the University of Michigan for evaluating the central nervous system (CNS) activity of targeted therapies in neuro-oncology. In this report, we present the methodology of CNS-TAP in a series of pediatric and adolescent patients with high-risk brain tumors, for which molecular profiling (academic and commercial) was sought and targeted agents were incorporated. Four of five of the patients had potential clinical benefit (partial response or stable disease greater than 6 months on therapy). We further describe the specific drug properties of each agent chosen and discuss characteristics relevant in their evaluation for therapeutic suitability. Finally, we summarize both tumor and drug characteristics that impact the ability to successfully incorporate targeted therapies into CNS malignancy management.
- Published
- 2017
23. PDTM-29. CSF H3F3A K27M CIRCULATING TUMOR DNA COPY NUMBER QUANTIFIES TUMOR GROWTH AND TREATMENT RESPONSE
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Masha G. Savelieff, Kaitlin Q. McMurray, Kyle Wierzbicki, Jason Heth, Brendan Mullan, Zachary Miklja, Amy K. Bruzek, Rintaro Hashizume, Patricia L. Robertson, Karin M. Muraszko, Hugh J. L. Garton, Benjamin H. Singer, Carl Koschmann, Angel M. Carcaboso, Rajen Mody, Stefanie Stallard, Sriram Venneti, and Taylor Garcia
- Subjects
Abstracts ,Cancer Research ,Treatment response ,Oncology ,Circulating tumor DNA ,business.industry ,Cancer research ,Medicine ,Tumor growth ,Neurology (clinical) ,business - Abstract
Primary brain tumors and CNS metastases shed circulating tumor DNA (ctDNA) into the CSF, which can be assessed for tumor-associated mutations. Thus far, there have been no extensive studies using droplet digital PCR (ddPCR) to detect and quantify ctDNA in the CSF of pediatric high-grade brain tumor patients. There are also gaps in our knowledge, including the potential dependence of ctDNA amount on location of sample collection and whether ctDNA can be used to quantify tumor growth and treatment response. To address these questions, we developed a novel H3F3A K27M ddPCR assay and applied it to four pediatric patients with H3F3A K27M-mutant DIPG and GBM. We found that ddPCR was able to detect the K27M mutation in patient CSF and that the closest relation emerged between mutant K27M copies per ng of total DNA (henceforth K27M copies) and contrast-enhancing tumor area on MRI. Multi-focal CSF sampling at autopsy of a DIPG patient exhibited differences in K27M copies by proximity to the tumor. To better understand changes in K27M copies in response to both growth and treatment of DIPG, we developed an in vitro system comprised of astrocytes (NHAs) co-cultured with luciferase-expressing human DIPG cell line DIPG007 as a means to simulate ctDNA release into the CSF. We found that DIPG007 cells released ctDNA into culture media in proportion to their proliferation, even when the media was changed frequently to approximate the constant production and resorption of CSF. Irradiation with 8 Gy resulted in a spike in mutant ctDNA 72–120 hours post-radiotherapy before decreasing. In summary, our study suggests that H3F3A K27M copies in the CSF of children with high-grade brain tumors have a linear relation with contrast-enhancing tumor area and that ddPCR can be used to follow treatment response including ctDNA release shortly after effective therapies.
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- 2018
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24. GENE-17. ATRX LOSS IN GLIOMA RESULTS IN EPIGENETIC DYSREGULATION OF THE G2/M CHECKPOINT AND SENSITIVITY TO ATM INHIBITION
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Ruby Siada, Ashwath Muruganand, Ramya Ravindran, Tingting Qin, Viveka Nand Yadav, Carl Koschmann, Pedro R. Lowenstein, Alnawaz Rehemtulla, Carla Danussi, Xinyi Zhao, Alan K. Meeker, Maureen A. Sartor, Meredith A. Morgan, Sriram Venneti, Maria G. Castro, Drew Pratt, Jason T. Huse, Micah Harris, Jacqueline A. Brosnan-Cashman, Taylor Garcia, and Brendan Mullan
- Subjects
Genetics and Epigenetics ,Cancer Research ,Mutation ,Cell cycle checkpoint ,Biology ,Cell cycle ,medicine.disease ,medicine.disease_cause ,Chromatin ,Oncology ,Glioma ,medicine ,Cancer research ,Neurology (clinical) ,Epigenetics ,Gene ,ATRX - Abstract
Gliomas are a leading cause of cancer mortality in children and adults and new targeted therapies are desperately needed. ATRX is a chromatin remodeling protein that is recurrently mutated in H3F3A-mutant pediatric GBM and IDH-mutant grade 2/3 adult glioma. We previously showed that loss of ATRX in glioma results in tumor growth and additional tumor mutations. However, the mechanism driving these phenotypes has not been fully established. We found that in ChIP-Seq datasets of mouse neuronal precursor cells (NPCs) and experimental models of human glioma cells, ATRX binds and regulates the chromatin state of promoters and enhancers for gene sets associated with regulation of the cell cycle G2/M checkpoint. In line with this, analysis of single-cell seq (sc-seq) data from IDH-mutant gliomas (n=16) shows that ATRX-mutant tumors (IDH-A) demonstrate a population of cycling cells with dysregulated cell cycle phase gene set expression when compared to ATRX-wildtype tumors (IDH-O). In glioma models, ATRX-deficient cells exhibit a seven-fold increase in mitotic index at 16 hours after sub-lethal radiation and enhanced activation of the master cell cycle regulator ATM with radiation. Treatment of ATRX-deficient gliomas with ATM inhibitors results in a selective increase in dysfunctional cell cycling and increased radio-sensitization in ATRX-deficient glioma cells. Using an ATM-luciferase reporter in orthotopically-implanted human GBM cells, both AZD0156 and AZD1390 demonstrate in vivo pathway inhibition. Mice intra-cranially implanted with ATRX-deficient GBM cells demonstrate a doubling of median survival compared to radiated controls (p=0.0018) when treated with AZD0156 combined with radiation. This study demonstrates that ATRX-deficient glioma display epigenetic dysregulation of the G2/M checkpoint, which opens a new window for therapies targeting this unique phenotype.
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- 2019
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- View/download PDF
25. The effect of everolimus on CNS penetration and efficacy of dasatinib in the treatment of PDGFRA-driven glioma
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Zachary Miklja, Alyssa Paul, Marcia Leonard, Ruby Siada, Manjunath P. Pai, Amy K. Bruzek, Brendan Mullan, Patricia L. Robertson, Stefanie Stallard, Carl Koschmann, Bernard L. Marini, Timothy N. Phoenix, Viveka Nand Yadav, and Taylor Garcia
- Subjects
Cancer Research ,Everolimus ,business.industry ,PDGFRA ,medicine.disease ,Cns penetration ,Dasatinib ,03 medical and health sciences ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,Glioma ,medicine ,Cancer research ,business ,030215 immunology ,medicine.drug - Abstract
e13508 Background: Pediatric and adult high-grade glioma (HGG) frequently harbor PDGFRA alterations. The CNS penetration of PDGFRA inhibitors, such as dasatinib, is limited by the tumor-efflux protein P-glycoprotein (P-gp). We hypothesized that co-treatment with everolimus, which has been shown to block P-gp, will increase CNS penetration and efficacy of dasatinib in in vitro and in vivo models as well as in human PDGFRA-driven glioma. Methods: Tumors were generated in mice using an intra-uterine electroporation (IUE) model [introduction of TP53, PDGFRA and H3K27M mutations in pre-natal cortex]. Dose response, synergism studies, P-GP inhibition and pharmacodynamics/pharmacokinetic studies were then performed on in vitro and in vivo models employing this IUE system. A phase 2 trial employing dasatinib and everolimus was established for children with HGG and diffuse intrinsic pontine glioma (DIPG) that contain PDGFRA alterations (NCT03352427). Paired CSF/plasma samples (before and after addition of everolimus) were collected from enrolled patients. Results: Dasatinib effectively treated mouse HGG cells with an IC50 of 100 nM. Dose-dependent reduction in PDGFRA and pPDGFRA was found. P-gp inhibitor assay confirmed that everolimus strongly blocks P-gp activity at 1 uM (p = 0.0028 vs untreated). Mice treated with dasatinib and everolimus had extended survival as compared to control. Two-hour exposure to everolimus resulted in sub-IC50 dasatinib concentration in cortex (23 nM) and tumor (65 nM). 24-hour exposure to everolimus resulted in greater cortex (235 nM) and tumor (509 nM) concentrations. Two trial patients, recurrent HGG ( PDGFRA-amplified) and recurrent DIPG ( PDGFRA D842V) respectively, survived 6 months and 9 months (ongoing) after progression, which compares very favorably to historical controls. A paired CSF sample from the PDGFRA-amplified patient showed a 50% increase in CSF dasatinib level after addition of everolimus. Conclusions: Dasatinib treatment of PDGFRA-driven HGG is improved with everolimus blockade of P-gp and represents a novel route for improving CNS penetration and efficacy of therapies for HGG. Clinical trial information: NCT03352427.
- Published
- 2019
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26. HGG-03. EVEROLIMUS TREATMENT IMPROVES THE CNS PENETRATION AND EFFICACY OF DASATINIB IN THE TREATMENT OF PDGFRA-DRIVEN PEDIATRIC HIGH-GRADE GLIOMA AND DIFFUSE INTRINSIC PONTINE GLIOMA
- Author
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Alyssa Paul, Taylor Garcia, Zachary Miklja, Marcia Leonard, Brendan Mullan, Viveka Nand Yadav, Patricia L. Robertson, Carl Koschmann, Bernard L. Marini, Amy K. Bruzek, Manjunath P. Pai, Timothy N. Phoenix, and Stefanie Stallard
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Cancer Research ,Everolimus ,business.industry ,PDGFRA ,medicine.disease ,digestive system diseases ,Cns penetration ,Dasatinib ,Oncology ,Glioma ,medicine ,Cancer research ,Neurology (clinical) ,High Grade Glioma ,business ,Platelet-Derived Growth Factor alpha Receptor ,Protein p53 ,High-Grade Glioma ,medicine.drug - Abstract
Pediatric high-grade glioma (HGG) and diffuse intrinsic pontine glioma (DIPG) frequently harbor alterations in PDGFRA. The CNS penetration of PDGFRA inhibitors, such as dasatinib, is limited by the tumor-efflux protein P-glycoprotein (P-gp). We hypothesized that co-treatment with everolimus, which has been shown to block P-gp in non-tumor models, would increase CNS penetration and efficacy of dasatinib in PDGFRA-driven HGG and DIPG. Dasatinib effectively treated mouse DIPG cells generated from an intra-uterine electroporation (IUE) model (TP53, PDGFRA and H3K27M mutations), with an IC(50) of 100 nM and a dose-dependent reduction in PDGFRA and pPDGFRA by western blot. Using an in vitro P-gp inhibitor assay, we confirmed that everolimus strongly blocks P-gp activity at 1 uM (p=0.0028 vs untreated, and NS vs complete P-gp block). Treatment studies using the IUE model are ongoing. Brief treatment with everolimus resulted in sub-IC(50) dasatinib average mouse cortex (23 nM) and tumor (65 nM) concentrations by mass spectroscopy, but prolonged (>24 hours) everolimus exposure resulted in improved average cortex (288 nM) and brainstem tumor (360 nM) concentrations. Based on this promising pre-clinical data, we established a phase 2 trial employing dasatinib and everolimus in children with HGG and DIPG that contain PDGFRA alterations (NCT03352427). The first two patients (a recurrent PDGFRA-amplified HGG and a recurrent PDGFRA D842V-mutated DIPG) treated with dasatinib and everolimus after re-irradiation survived 6 months and 9 months (ongoing), respectively, after progression, which compares very favorably to historical controls. Paired CSF samples (before and after addition of everolimus) from the PDGFRA-amplified patient showed a 50% increase in CSF dasatinib level after addition of everolimus. In summary, we demonstrate that dasatinib treatment of PDGFRA-driven pediatric HGG and DIPG is improved with everolimus blockade of P-gp. This represents a novel route for improving the CNS penetration and efficacy of precision therapies for pediatric HGG.
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- 2019
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27. HGG-08. ATRX LOSS IN PEDIATRIC GBM RESULTS IN EPIGENETIC DYSREGULATION OF G2/M CHECKPOINT MAINTENANCE AND SENSITIVITY TO ATM INHIBITION
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Maria G. Castro, Ruby Siada, Taylor Garcia, Meredith A. Morgan, Drew Pratt, Tingting Qin, Jason T. Huse, Xinyi Zhao, Alan K. Meeker, Alnawaz Rehemtulla, Jacqueline A. Brosnan-Cashman, Pedro R. Lowenstein, Carl Koschmann, Brendan Mullan, Sriram Venneti, Carla Danussi, and Viveka Nand Yadav
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Cancer Research ,Cell cycle checkpoint ,biology ,business.industry ,Cell cycle ,medicine.disease ,Histone ,Oncology ,CpG site ,Tumor progression ,Glioma ,biology.protein ,medicine ,Cancer research ,Neurology (clinical) ,Epigenetics ,High Grade Glioma ,business ,ATRX - Abstract
ATRX is a histone chaperone protein recurrently mutated in pediatric GBM. We previously confirmed its role in tumor progression and mutational burden in glioma. However, the mechanism which mediates the proliferative advantage of ATRX loss in pediatric GBM remains unexplained. Recent data revealed a distinct pattern of DNA binding sites of the ATRX protein using ChIP-seq in mouse neuronal precursor cells (mNPCs). Using the ATRX peaks identified in p53(-/-) mNPCs, we confirmed that ATRX binding sites were significantly enriched in gene promoters (p
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- 2019
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28. Guest Editor's Introduction
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Brendan Mullan
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Globalization ,Political science ,Political economy ,General Social Sciences - Published
- 2013
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29. T-type voltage-gated Ca
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Brendan, Mullan, Jessica, Pettis, and William F, Jackson
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CaV3.2 ,Nickel ,mibefradil ,vasoconstriction ,Vasodilation ,Original Article ,Original Articles ,large‐conductance calcium‐activated potassium channels ,ML218 ,Myogenic tone ,T‐type voltage‐gated calcium channels - Abstract
T‐type voltage‐gated Ca2+ channels (CaV3.2 VGCC) have been hypothesized to control spontaneous transient outward currents (STOCs) through large‐conductance Ca2+‐activated K+ channels (BKCa), and contribute to the negative‐feedback regulation of myogenic tone. We tested this hypothesis in superior epigastric arteries (SEAs) isolated from male C57BL/6 mice. SEAs were isolated and enzymatically dissociated to obtain single smooth muscle cells (SMCs) for whole‐cell recording of paxilline‐sensitive (PAX, 1 μmol/L) STOCs at −30 mV, or cannulated and studied by pressure myography (80 cm H2O, 37°C). The CaV3.2 blocker Ni2+ (30 μmol/L) had no effect on STOC amplitude (20.1 ± 1.7 pA vs. 20.6 ± 1.7 pA; n = 12, P = 0.6), but increased STOC frequency (0.79 ± 0.15 Hz vs. 1.21 ± 0.22 Hz; n = 12, P = 0.02). Although Ni2+ produced concentration‐dependent constriction of isolated, pressurized SEAs (logEC50 = −5.8 ± 0.09; E max = 72 ± 5% constriction), block of BKCa with PAX had no effect on vasoconstriction induced by 30 μmol/L Ni2+ (in the absence of PAX = 66 ± 4% constriction vs. in the presence of 1 μmol/L PAX = 65 ± 4% constriction; n = 7, P = 0.06). In contrast to Ni2+, the nonselective T‐type blocker, mibefradil, produced only vasodilation (logEC50 = −6.9 ± 0.2; E max = 74 ± 8% dilation), whereas the putative T‐type blocker, ML218, had no significant effect on myogenic tone between 10 nmol/L and 10 μmol/L (n = 6–7, P = 0.59). Our data do not support a role for CaV3.2 VGCC in the negative‐feedback regulation of myogenic tone in murine SEAs and suggest that Ni2+ may constrict SEAs by means other than block of CaV3.2 VGCC.
- Published
- 2016
30. The \^G Infrared Search for Extraterrestrial Civilizations with Large Energy Supplies. III. The Reddest Extended Sources in WISE
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Matthew S. Povich, Brendan Mullan, Jessica Maldonado, Roger L. Griffith, Steinn Sigurđsson, and Jason T. Wright
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Physics ,Luminous infrared galaxy ,Nebula ,Spiral galaxy ,Space and Planetary Science ,Star formation ,Young stellar object ,Astronomy and Astrophysics ,Dark galaxy ,Astrophysics ,Astrophysics - Astrophysics of Galaxies ,Galaxy ,Luminosity - Abstract
Nearby Type III (galaxy-spanning) Kardashev supercivilizations would have high mid-infrared (MIR) luminosities. We have used the Wide-field Infrared Survey Explorer (WISE) to survey ~$1 \times 10^5$ galaxies for extreme MIR emission, $10^3$ times more galaxies than the only previous such search. We have calibrated the WISE All-sky Catalog pipeline products to improve its photometry for extended sources. We present 563 extended sources with $|b| \ge 10$ and red MIR colors, having visually vetted them to remove artifacts. No galaxies in our sample host an alien civilization reprocessing more than 85% of its starlight into the MIR, and only 50 galaxies, including Arp 220, have MIR luminosities consistent with >50% reprocessing. Ninety of these (likely) extragalactic sources have little literature presence; in most cases they are likely barely resolved galaxies or pairs of galaxies undergoing large amounts of star formation. Five are new to science and deserve further study. The Be star 48 Librae sits within a MIR nebula, and we suggest that it may be creating dust. WISE, 2MASS, and Spitzer imagery shows that IRAS 04287+6444 is consistent with a previously unnoticed, heavily extinguished cluster of young stellar objects. We identify five "passive" (i.e. red) spiral galaxies with unusually high MIR and low NUV luminosity. We search a set of optically "dark" HI galaxies for MIR emission, and find none. These 90 poorly understood sources and five anomalous passive spirals deserve follow-up via both SETI and conventional astrophysics., Comment: ApJS 217 25. 44pp, 9 tables, 25 figures. Due to limitations of arXiv LaTeX compilation, figures are sub-optimally placed and tables are not landscape. See http://astro.psu.edu/~jtwright/Dyson/GHAT3.pdf for version with full resolution figures and fully legible tables
- Published
- 2015
31. Advanced Age Increases the Amplitude of ATP‐sensitive K + Channel Currents in Murine Resistance Artery Smooth Muscle Cells
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Chantelle Washington, William F. Jackson, Brendan Mullan, Steven S. Segal, and Sebastien Hayoz
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medicine.medical_specialty ,Chemistry ,Biochemistry ,Resistance artery ,Amplitude ,Endocrinology ,Smooth muscle ,Internal medicine ,Genetics ,medicine ,Biophysics ,Atp sensitive k channel ,Molecular Biology ,Biotechnology - Published
- 2015
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32. Emigration and the sending state
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Cristián Doña-Reveco and Brendan Mullan
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Extraterritoriality ,Migration studies ,Politics ,Conceptualization ,Political science ,media_common.quotation_subject ,Political economy ,Developing country ,Citizenship ,Country of origin ,Emigration ,media_common - Abstract
An emerging research area within migration studies is the relationship between the state and its emigrants, comprising a broad array of connections between the country of origin, the emigrant, and the country of reception. This research area can trace its origins to the 1960s with the concern over the impact of brain drain in developing nations. Now, this field incorporates the construction of citizenship, the extraterritoriality of the nation-state, definitions of home, and the growing influences that diasporas might have in the place of origin. Following a historical overview of the right to emigrate, in this chapter we describe and analyze the conceptualization of development from the perspective of the sending country, new constructions of brain drain and brain circulation, the political influence of emigrants in the home country, and the notion of extraterritorial citizenship. We conclude this chapter restating the relevance of analyzing emigration as a central component of the migration process.
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- 2015
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33. Social Adaptation Problems among Amerasian Refugees
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Brendan Mullan, Chong Anna Rumsey, and Lorraine Majka
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Economic growth ,education.field_of_study ,Variables ,Refugee ,media_common.quotation_subject ,Vietnamese ,05 social sciences ,Geography, Planning and Development ,Immigration ,Population ,language.human_language ,0506 political science ,Variety (cybernetics) ,0502 economics and business ,050602 political science & public administration ,language ,Sociology ,050207 economics ,Association (psychology) ,education ,Adaptation (computer science) ,Social psychology ,Demography ,media_common - Abstract
In this paper we describe and explain a variety of problems experienced by Amerasian youths upon their resettlement in the United States. We examine a matrix of contextual, household and individual behavioral predictors of Amerasian youths' problems and we argue that, taken individually, existing theoretical frameworks do not adequately explain the Amerasian adaptation process. The most significant predictors of Amerasian youths' problems are an unstable home environment, gender (maleness), whether or not the mother reported mental and physical problems, and the type of assistance provider (mutual assistance association). We add to existing research on Amerasians' process of adaptation by incorporating a wider variety of youths' problems into the dependent variable, by including hitherto unavailable independent variables into the analysis, and by suggesting some immediate strategies and new policy initiatives aimed at helping resettlement agencies deal with this specialized immigrant population. In sum, we demonstrate that Amerasians' unofficially “mixed” immigration status – they are designated as immigrants who are treated as refugees but are simultaneously half-American – compounds theorists and policy makers' difficulties in dealing conceptually with this population.
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- 2002
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34. Ethnic Communities and Ethnic Organizations Reconsidered: South-East Asians and Eastern Europeans in Chicago
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Lorraine Majka and Brendan Mullan
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Eastern european ,Economic growth ,Refugee ,media_common.quotation_subject ,Immigration ,Ethnic group ,Mainstream ,Sociology ,Ethnic history ,Metropolitan area ,Solidarity ,Demography ,media_common - Abstract
A major debate continues about whether immigrants receive benefits by virtue of their attachment to ethnic communities and ethnic organizations. On one side of the controversy, a large body of literature suggests that the ethnic community, which often contains resources that promote immigrants’ adaptation and assimilation, actually hinders adaptation because the resources of mainstream institutions are less accessible to immigrants (often because they are also minorities). On the opposite side of the argument, critics contend that the ethnic solidarity school emphasizes the positive effects of ethnic communities and ethnic organizations on immigrant populations, while ignoring many of the negative consequences of migrants’ involvement in ethnic groups and ethnic institutions. The purpose of this article is to reconsider whether ethnic communities and ethnic institutions facilitate immigrants’ socio-economic adaptation. Specifically, the study analyses the impact of ethnic organizations on public assistance utilization among South-East Asian and Eastern European refugees in the Chicago metropolitan area in the late 1980s. The paper proceeds in five stages. As a background to the overall study, the literature on ethnic communities and ethnic organizations is reviewed. This is followed by a discussion of the development of mutual assistance associations (MAAs) in the US. Third is a concise description of the data and methods. Fourth is a presentation of the results. The article concludes with an assessment of the implications of the findings and suggestions for future research.
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- 2002
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35. T-type voltage-gated Ca2+channels do not contribute to the negative feedback regulation of myogenic tone in murine superior epigastric arteries
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William F. Jackson, Brendan Mullan, and Jessica Pettis
- Subjects
0301 basic medicine ,Mibefradil ,medicine.medical_specialty ,Electrical impedance myography ,Voltage-gated ion channel ,Chemistry ,Vasodilation ,Constriction ,03 medical and health sciences ,030104 developmental biology ,Endocrinology ,Neurology ,Anesthesia ,Internal medicine ,Negative feedback ,medicine ,General Pharmacology, Toxicology and Pharmaceutics ,medicine.symptom ,Vasoconstriction ,medicine.drug ,Myogenic tone - Abstract
T-type voltage-gated Ca2+ channels (CaV3.2 VGCC) have been hypothesized to control spontaneous transient outward currents (STOCs) through large-conductance Ca2+-activated K+ channels (BKCa), and contribute to the negative-feedback regulation of myogenic tone. We tested this hypothesis in superior epigastric arteries (SEAs) isolated from male C57BL/6 mice. SEAs were isolated and enzymatically dissociated to obtain single smooth muscle cells (SMCs) for whole-cell recording of paxilline-sensitive (PAX, 1 μmol/L) STOCs at −30 mV, or cannulated and studied by pressure myography (80 cm H2O, 37°C). The CaV3.2 blocker Ni2+ (30 μmol/L) had no effect on STOC amplitude (20.1 ± 1.7 pA vs. 20.6 ± 1.7 pA; n = 12, P = 0.6), but increased STOC frequency (0.79 ± 0.15 Hz vs. 1.21 ± 0.22 Hz; n = 12, P = 0.02). Although Ni2+ produced concentration-dependent constriction of isolated, pressurized SEAs (logEC50 = −5.8 ± 0.09; Emax = 72 ± 5% constriction), block of BKCa with PAX had no effect on vasoconstriction induced by 30 μmol/L Ni2+ (in the absence of PAX = 66 ± 4% constriction vs. in the presence of 1 μmol/L PAX = 65 ± 4% constriction; n = 7, P = 0.06). In contrast to Ni2+, the nonselective T-type blocker, mibefradil, produced only vasodilation (logEC50 = −6.9 ± 0.2; Emax = 74 ± 8% dilation), whereas the putative T-type blocker, ML218, had no significant effect on myogenic tone between 10 nmol/L and 10 μmol/L (n = 6–7, P = 0.59). Our data do not support a role for CaV3.2 VGCC in the negative-feedback regulation of myogenic tone in murine SEAs and suggest that Ni2+ may constrict SEAs by means other than block of CaV3.2 VGCC.
- Published
- 2017
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36. Family and Internal Migration in Taiwan
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Brendan Mullan, Chun-Hao Li, Bernard Gallin, and Rita S. Gallin
- Subjects
Employment ,China ,Economic growth ,Asia ,Urban Population ,Economics ,media_common.quotation_subject ,Decision Making ,Population ,Population Dynamics ,Geography, Planning and Development ,Taiwan ,0507 social and economic geography ,Wage ,050701 cultural studies ,Urbanization ,050602 political science & public administration ,Interpersonal Relations ,Health Workforce ,Land tenure ,Human resources ,education ,Developing Countries ,Demography ,media_common ,Behavior ,Family Characteristics ,education.field_of_study ,Geography ,Asia, Eastern ,Internal migration ,business.industry ,Human migration ,05 social sciences ,Social Support ,Emigration and Immigration ,0506 political science ,Industrialisation ,Socioeconomic Factors ,Demographic economics ,business - Abstract
In this paper we examine internal migration in Taiwan in the 1960s when rural economic conditions were volatile, the shift from agriculture to non-farm employment was gaining momentum, and the government's policy of industrialization through export was adopted. Migration is seen as one component of households' survival/adaptation strategy and accessibility to land, participation in local wage labor markets, and access to migrants' social networks are the mechanisms through which households determine and deploy their migration strategies. Our empirical analyzes are consistent with our a priori theoretical expectations that household access to land, participation in the local wage labor force, and access to migrants' social networks directly influenced how families in Taiwan deployed migration as a household survival strategy.
- Published
- 1998
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37. User perceptions of the quality of nutrition care for children under five year in Botswana
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Brendan Mullan, M.A. Uebersax, Nnyepi, J.T. Bond, and L. Weatherspoon
- Subjects
Program evaluation ,medicine.medical_specialty ,education.field_of_study ,Under-five ,business.industry ,Population ,Public Health, Environmental and Occupational Health ,Interpersonal communication ,Focus group ,Interpersonal relationship ,Infectious Diseases ,Nursing ,Family medicine ,Intervention (counseling) ,Health care ,Medicine ,business ,education - Abstract
Perceptions about the quality of healthcare attract a great deal of attention due to their influence on user satisfaction and the continued utilization of health services. The objective was to examine the perceptions of caregivers and healthcare providers about nutrition care for children aged 0-5 years and the interpersonal communication between providers and caregivers in health facilities in Botswana. Ten focus group discussions involving about six caregivers each and survey data from health providers (n = 39) were used to examine perceptions about nutrition care for children aged 0-5 years and interpersonal communications between providers and caregivers. Caregivers examined in this study perceived nutrition and dietary screening and intervention as important components of healthcare for children. However the caregivers were concerned about the frequent shortage of food supplements the lack of alternative food supplements and programs for children whose needs were not adequately met by existing services. Poor interpersonal communication between providers and caregivers shortage of supplements and long queues were also identified as concerns by both caregivers and health providers. Although health care service providers reported to have been trained to provide nutrition and dietary care many were not satisfied with their present skill level in these areas. The caregivers perceived nutrition care to be an important aspect of care. However the poor interpersonal communication between providers and caregivers and the low confidence that providers have in their skill level in nutrition care is likely to adversely influence the dependent care abilities of caregivers. (authors)
- Published
- 2009
38. Comparison of High-Order Programmable Mismatch Shaping Bandpass DEM Implementations Applicable to Nyquist-Rate D/A Converters
- Author
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Shantanu Mehta, Roberto Pelliconi, Christophe Erdmann, Vincent O'Brien, and Brendan Mullane
- Subjects
Bandpass ,current-steering ,DEM ,Nyquist-DAC ,programmable ,Electric apparatus and materials. Electric circuits. Electric networks ,TK452-454.4 - Abstract
Non-shaping dynamic element matching (DEM) randomization schemes are widely adopted for wideband Nyquist-rate digital-to-analog converters (DACs) within transmitter architectures. Here, randomization translates the mismatch-induced distortion into white noise from dc to $\text{F}_{\mathrm{ s}}$ /2 range. However, the DAC performance for various bands within the Nyquist range cannot be improved using non-shaped DEMs as their inherent structure cannot be made programmable. Conversely, mismatch-shaping DEMs can be made tunable to shape the DAC errors over various signal bands, which makes them suitable for wireless transmitter applications. This paper presents the design methodology for high-order mismatch-shaping DEM architectures suitable for wideband Nyquist DACs. The challenge in designing high-order DEM structures for Nyquist DACs is to make them programmable to cover various signal bands within the Nyquist range and to operate them at high-frequencies demanded by the applications. Moreover, the stability of the high-order loop-filter within the DEM and its implementation cost is of great concern. This work details techniques to design programmable, stable, and hardware efficient high-order DEM structures for wideband Nyquist DACs. The DEM structures are implemented on an UltraScale+ FPGA device for prototyping and validation. Furthermore, the DEM design operation is validated by obtaining the measurement results interfacing with a 5-bit analog DAC.
- Published
- 2021
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39. THE Ĝ INFRARED SEARCH FOR EXTRATERRESTRIAL CIVILIZATIONS WITH LARGE ENERGY SUPPLIES. II. FRAMEWORK, STRATEGY, AND FIRST RESULT
- Author
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Jason T. Wright, Steinn Sigurdsson, Brendan Mullan, Matthew S. Povich, and Roger L. Griffith
- Subjects
Physics ,Luminous infrared galaxy ,Extraterrestrial intelligence ,Astronomy ,Astronomy and Astrophysics ,Physics - Popular Physics ,Astrophysics - Astrophysics of Galaxies ,Galaxy ,Stars ,Null result ,Space and Planetary Science ,Extraterrestrial life ,Waste heat ,Dyson sphere - Abstract
We describe the framework and strategy of the \^G infrared search for extraterrestrial civilizations with large energy supplies, which will use the wide-field infrared surveys of WISE and Spitzer to search for these civilizations' waste heat. We develop a formalism for translating mid-infrared photometry into quantitative upper limits on extraterrestrial energy supplies. We discuss the likely sources of false positives, how dust can and will contaminate our search, and prospects for distinguishing dust from alien waste heat. We argue that galaxy-spanning civilizations may be easier to distinguish from natural sources than circumstellar civilizations (i.e., Dyson spheres), although Gaia will significantly improve our capability to identify the latter. We present a "zeroth order" null result of our search based on the WISE all-sky catalog: we show, for the first time, that Kardashev Type III civilizations (as Kardashev originally defined them) are very rare in the local universe. More sophisticated searches can extend our methodology to smaller waste heat luminosities, and potentially entirely rule out (or detect) both Kardashev Type III civilizations and new physics that allows for unlimited "free" energy generation., Comment: 15 pages, 4 figures, accepted for publication in the Astrophysical Journal
- Published
- 2014
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40. Analysis and Design of a Tri-Level Current-Steering DAC With 12-Bit Linearity and Improved Impedance Matching Suitable for CT-ADCs
- Author
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Shantanu Mehta, Daniel O'Hare, Vincent O'Brien, Eric Thompson, and Brendan Mullane
- Subjects
Tri-level ,current-steering ,DACs ,thermal noise ,DNL ,INL ,Electric apparatus and materials. Electric circuits. Electric networks ,TK452-454.4 - Abstract
This paper presents the design of a low-latency, highly linear current-steering DAC for use in continuous-time ADCs. A detailed analysis of equivalent unary-weighted current-steering DAC topologies in terms of mismatch, noise, and output-impedance related distortion is carried out. From this analysis, we propose a tri-level DAC design that achieves 12-bit static linearity and is suitable for implementation in a continuous-time ADC architecture. To reduce output-impedance related distortion, the design combines DAC slice impedance matching with a proposed compensation technique. By incorporating the tri-level DAC in a continuous-time ADC architecture, the technique demonstrates ~ 8dB improvement in DAC dynamic performance at high frequencies over the Nyquist-band at 100MS/s. The DAC has been verified by simulation results in TSMC 1.2V 65nm CMOS technology.
- Published
- 2020
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41. Determinants of Adequate Growth Parameters in Children of Ages 0–60 Months With Access to Primary Health Care Services in a Developing Country
- Author
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J.T. Bond, M.S. Nnyepi, Brendan Mullan, M.A. Uebersax, and L. Weatherspoon
- Subjects
Nutrition and Dietetics ,Nursing ,business.industry ,Primary health care ,Developing country ,Medicine ,business ,Food Science - Published
- 2005
- Full Text
- View/download PDF
42. Employment Retention, Area of Origin and Type of Social Support among Refugees in the Chicago Area
- Author
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Lorraine Majka and Brendan Mullan
- Subjects
Economic growth ,media_common.quotation_subject ,Refugee ,fungi ,05 social sciences ,Immigration ,Ethnic group ,food and beverages ,Community service ,Social Welfare ,Metropolitan area ,0506 political science ,Social support ,Geography ,Arts and Humanities (miscellaneous) ,Asian americans ,0502 economics and business ,050602 political science & public administration ,Demographic economics ,050203 business & management ,media_common ,Demography - Abstract
This article examines the impact of various sociodemographic variables on refugees’ employment propensities in the greater metropolitan Chicago area. It extends existing research and knowledge of forced migrants’ labor force activities by exploring the impact of region of origin and refugees’ access to support systems and organizations on employment retention and job maintenance. The analysis shows that refugees’ labor force participation patterns and experiences are influenced differentially both by their background characteristics and by their exposure to U.S. assistance systems. Southeast Asian asylees are less successful in maintaining stable job placements when compared to their more socially advantaged and often more suitably placed Eastern European counterparts. Refugee self-help initiatives require greater empowerment and increased acceptance and status to assist other refugees in adjusting to the host society.
- Published
- 1992
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43. The Impact of Social Networks on the Occupational Status of Migrants
- Author
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Brendan Mullan
- Subjects
Employment ,Economic growth ,Economics ,Occupational prestige ,Population ,Population Dynamics ,Social position ,Interpersonal Relations ,Sociology ,education ,Developing Countries ,Mexico ,Socioeconomic status ,Demography ,Information Services ,Transients and Migrants ,Family Characteristics ,education.field_of_study ,Social network ,business.industry ,Communication ,Developed Countries ,Emigration and Immigration ,Social mobility ,United States ,Latin America ,Social Class ,Socioeconomic Factors ,Exchange of information ,North America ,Demographic economics ,Religious organization ,Americas ,business - Abstract
This paper postulates that there is a continuous exchange of information and knowledge between those who share the common bond of having migrated to the US. The individual components of this information exchange constitute social networks. The 2 hypotheses tested are 1) immediate social networks and people known in the US facilitate the flow of information both to new migrants and between established migrants, thus promoting upward social mobility; and 2) access to broader network ties, organization membership, extra-ethnic friendships, and familiarity with established institutions smooths the transition process, resulting in increased social position. The data used comes from a study conducted in 1982-1983 in 4 Mexican sending communities (2 rural, 2 urban), for a total of 440 migrants. Results show that migrants in every socioeconomic bracket reported access to some or all social network characteristics. There was contact with either a family member or acquaintances from the migrants' town of origin. Over 50% of migrants reported knowing many fellow townspeople. Twice as many migrants belong to a sports club as to a social or religious organization. Very few rural migrants report knowing no townspeople, while 32% of urban migrants claim no knowledge of fellow migrants from their town of origin. Urban origin migrants report more contacts with those of other ethnicity than rural migrants. Those employed in agriculture are least acquainted with social information and contacts, while those in skilled and service sectors are well acquainted with them. The results of fact and analysis show that 1) access to personal US networks results in an average 4.4 point advantage in occupational prestige scores over no access, and 2) utilizing institutional US networks combined with any cumulative US experience gives a migrant a 5 point advantage over a fellow migrant with identical experience level but no institutional network contacts. This is also true for institutional Mexican networks. Thus success or failure in migrating is partly due to migrants' societal infrastructure and the fact that available information and social networks are accessed and utilized differently by different migrants.
- Published
- 1989
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44. Processes of Hispanic and Black Spatial Assimilation
- Author
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Brendan Mullan and Douglas S. Massey
- Subjects
Cultural background ,education.field_of_study ,Geography ,Sociology and Political Science ,Population ,Ethnic group ,Theoretical models ,Ecological succession ,1970 Census ,education ,Socioeconomic status ,Acculturation ,Demography - Abstract
Processes of Hispanic and black spatial assimilation were examined in selected SMSAs in the southwestern United States using 1960 and 1970 census data. Residential succession was much less prevalent in Hispanic areas than in black areas, and established Hispanic areas were quite rare. However, for both groups average SES fell as areas underwent transition from Anglo to established minority areas. The main difference between Hispanic and black areas was that invasion was followed by succession in less than 50% of cases. Whether tracts lost or gained Anglos following invasion by Hispanics dependend on the objective characteristics of the invaders and the location of the tract relative to established minority areas. Overall, blacks were much less able to translate status attainments into mobility out of the ghetto and into contact with Anglos. Path models of Hispanic and black spatial assimilation revealed structural differences in processes between the two groups. Given the same socioeconomic inputs,the ult...
- Published
- 1984
- Full Text
- View/download PDF
45. Reply to Goldstein and White
- Author
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Brendan Mullan and Douglas S. Massey
- Subjects
White (horse) ,Sociology and Political Science ,Anatomy ,Sociology - Published
- 1985
- Full Text
- View/download PDF
46. A demonstration of the effect of seasonal migration on fertility
- Author
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Douglas S. Massey and Brendan Mullan
- Subjects
education.field_of_study ,media_common.quotation_subject ,Total fertility rate ,Population ,Developing country ,Fertility ,social sciences ,Logistic regression ,Birth rate ,Geography ,behavior and behavior mechanisms ,population characteristics ,education ,Developed country ,Socioeconomic status ,Demography ,media_common - Abstract
Fertility estimates were calculated using own children data from the Mexican migrant town of Guadalupe, Michoacan. In this town, 75 percent of families have a member working in the United States, and wives are often regularly separated from their migrant husbands. Simulations by Menken (1979) and Bongaarts and Potter (1979) suggest that fertility among these women should be depressed. Our results confirmed this hypothesis, showing that the seasonal absence of migrant husbands disrupted both the level and timing of fertility. However, the effect was greater for legal than for illegal migrants, a pattern that stemmed from social factors as well as physical separation. A logistic regression analysis showed that reductions in birth probabilities are greater the longer a couple is separated, and that these reductions are in the range expected from prior simulations.
- Published
- 1984
- Full Text
- View/download PDF
47. Defects in the C. elegans acyl-CoA synthase, acs-3, and nuclear hormone receptor, nhr-25, cause sensitivity to distinct, but overlapping stresses.
- Author
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Jordan D Ward, Brendan Mullaney, Benjamin J Schiller, Le D He, Sarah E Petnic, Carole Couillault, Nathalie Pujol, Teresita U Bernal, Marc R Van Gilst, Kaveh Ashrafi, Jonathan J Ewbank, and Keith R Yamamoto
- Subjects
Medicine ,Science - Abstract
Metazoan transcription factors control distinct networks of genes in specific tissues, yet understanding how these networks are integrated into physiology, development, and homeostasis remains challenging. Inactivation of the nuclear hormone receptor nhr-25 ameliorates developmental and metabolic phenotypes associated with loss of function of an acyl-CoA synthetase gene, acs-3. ACS-3 activity prevents aberrantly high NHR-25 activity. Here, we investigated this relationship further by examining gene expression patterns following acs-3 and nhr-25 inactivation. Unexpectedly, we found that the acs-3 mutation or nhr-25 RNAi resulted in similar transcriptomes with enrichment in innate immunity and stress response gene expression. Mutants of either gene exhibited distinct sensitivities to pathogens and environmental stresses. Only nhr-25 was required for wild-type levels of resistance to the bacterial pathogen P. aeruginosa and only acs-3 was required for wild-type levels of resistance to osmotic stress and the oxidative stress generator, juglone. Inactivation of either acs-3 or nhr-25 compromised lifespan and resistance to the fungal pathogen D. coniospora. Double mutants exhibited more severe defects in the lifespan and P. aeruginosa assays, but were similar to the single mutants in other assays. Finally, acs-3 mutants displayed defects in their epidermal surface barrier, potentially accounting for the observed sensitivities. Together, these data indicate that inactivation of either acs-3 or nhr-25 causes stress sensitivity and increased expression of innate immunity/stress genes, most likely by different mechanisms. Elevated expression of these immune/stress genes appears to abrogate the transcriptional signatures relevant to metabolism and development.
- Published
- 2014
- Full Text
- View/download PDF
48. THE Ĝ INFRARED SEARCH FOR EXTRATERRESTRIAL CIVILIZATIONS WITH LARGE ENERGY SUPPLIES. III. THE REDDEST EXTENDED SOURCES IN WISE.
- Author
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Roger L. Griffith, Jason T. Wright, Jessica Maldonado, Matthew S. Povich, Steinn Sigurđsson, and Brendan Mullan
- Published
- 2015
- Full Text
- View/download PDF
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