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31 results on '"Brian Jiménez-García"'

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2. pyDockDNA: A new web server for energy-based protein-DNA docking and scoring

3. Integrative modeling of membrane-associated protein assemblies

5. Towards design of drugs and delivery systems with the Martini coarse-grained model

6. Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem

7. The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions

8. Rational Prediction of PROTAC-compatible Protein-Protein Interfaces by Molecular Docking

9. Discriminating physiological from non-physiological interfaces in structures of protein complexes: a community-wide study

10. Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment

11. Author response for 'Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment'

13. PDB-Tools Web: A user-friendly interface for the manipulation of PDB files

14. Structural Characterization of Protein-Protein Interactions with pyDockSAXS

15. Integrative modeling of protein-protein interactions with pyDock for the new docking challenges

16. Structural characterization of protein–protein interactions with pyDockSAXS

17. SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation

18. LightDock: a new multi-scale approach to protein–protein docking

19. pyDockEneRes: per-residue decomposition of protein-protein docking energy

20. MuGVRE. A virtual research environment for 3D/4D genomics

21. Information-Driven Modelling of Antibody-Antigen Complexes

22. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions

23. IRaPPA: Information retrieval based integration of biophysical models for protein assembly selection

24. Blind prediction of interfacial water positions in CAPRI

25. Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment

26. A protein-RNA docking benchmark (II): Extended set from experimental and homology modeling data

27. pyDockSAXS: protein–protein complex structure by SAXS and computational docking

28. Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges

29. A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data

30. pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring

31. CCharPPI web server: computational characterization of protein–protein interactions from structure

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