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Biotechnology is the application of biological techniques to develop new tools and products for medicine and industry. Due to various properties including chemical stability, biocompatibility, and specific activity, e.g. antimicrobial properties, many new and novel materials are being investigated for use in biosensing, drug delivery, hemodialysis, and other medical applications. Many of these materials are less than 100 nanometers in size. Nanotechnology is the engineering discipline encompassing designing, producing, testing, and using structures and devices less than 100 nanometers. One of the challenges associated with biomaterials is microbial contamination that can lead to infections. In recent work we have examined the functionalization of nanoporous biomaterials and antimicrobial activities of nanocrystalline diamond materials. In vitro testing has revealed little antimicrobial activity against Pseudomonas fluorescens bacteria and associated biofilm formation that enhances recalcitrance to antimicrobial agents including disinfectants and antibiotics. Laser scanning confocal microscopy studies further demonstrated properties and characteristics of the material with regard to biofilm formation., Introduction In recent years the development of nanotechnology has allowed the development of new materials to combat microbial biofilm formation on biomaterials. These advances in the use of nanostructured materials [...]

The predominant pathways for carbon cycling within an orange mat in Green Canyon (GC) block GC 234 in the Gulf of Mexico is ascertained. The results suggest that integration of microscopy, lipid biomarkers and stable isotope analysis, and molecular DNA analysis is an effective approach for understanding the community structure and ecological functions of microorganisms in natural environments.

ABSTRACT Hundreds of sites across the United States contain trichloroethene (TCE) contamination, including the Department of Energy's Savannah River Site (SRS) in Aiken, South Carolina. Previous studies have indicated that [...]

Research was conducted to examine an enzyme-linked immunosorbent assay (ELISA) and indirect immunofluorescence assay which employ a Thiothrix spp.-specific mouse monoclonal antibody to detect Thiothrix spp. in samples of bacterial nodules from Echinocardium cordatum cecum. Results from the ELISA showed that the concentration of Thiothrix spp. was greater in the whole nodules than in the outer layer. The symbiotic association between E. cordatum and Thiothrix spp. was observed to develop externally on the cecum nodule which was in an outpocketing of the digestive system.

An enzyme-linked immunosorbent assay uses a Thiothrix spp.-specific monoclonal antibody T3511 to identify Thiothrix spp. in artesian springs, waste water, underwater subterranean samples and ground water. Thiothrix spp. in waste water is identified by the indirect immunofluorescent microscopy, while background fluorescence prevents this method to be used for the identification of Thiothrix in natural spring water. Epitope T3511 is intracellular in both environmental isolates and laboratory strains, as revealed by electron micrographs of labeled Thiothrix spp.

Linear plasmids were analyzed to study the pathway for Vinyl Chloride (VC) biodegradation in strains AJ and TD and explain why this process happens at many sites but not in all sites where groundwater is contaminated with chloroethenes. The study illustrated that the metabolism of VC as the sole source of carbon and energy under aerobic conditions by the two isolates got from two distinct hazardous waste sites is due to linear megaplasmids.

Twenty-one bacteria were isolated and characterized from air samples collected in Africa and the Caribbean by the United States Geological Survey (USGS). Isolates were selected based on preliminary characterization as possible pathogens. Identification of the bacterial isolates was achieved using 16S rRNA gene sequence analysis, fatty acid methyl esters (FAMEs) profiling, the BIOLOG Microlog® System (carbon substrate assay), and repetitive extragenic palindromic (REP)-PCR analysis. The majority of isolates (18/21) were identified as species of the genus Bacillus. Three isolates were classified within the Bacillus cereus senso lato group, which includes Bacillus anthracis, Bacillus thuringiensis, and Bacillus cereus strains. One isolate was identified as a Staphylococcus sp., most closely related to species (i.e., Staphylococcus kloosii, Staphylococcus warneri) that are commonly associated with human or animal skin, but can also act as opportunistic pathogen. Another isolate was tentatively identified as Tsukamurella inchonensis, a known respiratory pathogen, and was resistant to the ten antibiotics tested including vancomycin. [ABSTRACT FROM AUTHOR]

1,2-Dichioroethane (1,2-DCA) and 1,2-dibromoethane (ethylene dibromide [EDB]) contaminate groundwater at many hazardous waste sites. The objectives of this study were to measure yields, maximum specific growth rates (ˆμ), and half-saturation coefficients (KS) in enrichment cultures that use 1,2-DCA and EDB as terminal electron acceptors and lactate as the electron donor and to evaluate if the presence of EDB has an effect on the kinetics of 1,2-DCA dehalogenation and vice versa. Biodegradation was evaluated at the high concentrations found at some industrial sites (>10 mg/liter) and at lower concentrations found at former leaded-gasoline sites (1.9 to 3.7 mg/liter). At higher concentrations, the Dehalococcoides yield was 1 order of magnitude higher when bacteria were grown with 1,2-DCA than when they were grown with EDB, while ˆμ's were similar for the two com- pounds, ranging from 0.19 to 0.52 day-1 with 1,2-DCA to 0.28 to 0.36 day-1 for EDB. KS was larger for 1,2-DCA (15 to 25 mg/liter) than for EDB (1.8 to 3.7 mg/liter). In treatments that received both compounds, EDB was always consumed first and adversely impacted the kinetics of 1,2-DCA utilization. Furthermore, 1,2-DCA dechlorination was interrupted by the addition of EDB at a concentration 100 times lower than that of the remaining 1,2-DCA; use of 1,2-DCA did not resume until the EDB level decreased close to its maximum contaminant level (MCL). In lower-concentration experiments, the preferential consumption of EDB over 1,2-DCA was confirmed; both compounds were eventually dehalogenated to their respective MCLs (5 μg/liter for 1,2- DCA, 0.05 μg/liter for EDB). The enrichment culture grown with 1 ,2-DCA has the advantage of a more rapid transition to 1,2- DCA after EDB is consumed. [ABSTRACT FROM AUTHOR]

Phytoremediation of chlorinated ethene (CE)-contaminated water was investigated at the Savannah River Site in Aiken, SC, USA. Perchloroethylene (PCE) and trichloroethylene (TCE) are present where CE-contaminated groundwater currently outcrops in seepline soils. Results of constructed and planted test cells, filled with soil from a noncontaminated seepline area and supplied with CE-contaminated groundwater (48 ppb) in the field for one season are presented. These test cells were planted with loblolly pines, hybrid poplars, coyote willow, and sweet gum. Cis-dichloroethylene (cDCE), a byproduct from rhizosphere microbial activity, was detected in the soils as well as some tree tissues. All trees tested were found to uptake both PCE and TCE (5-50 pbb/gm dry wt).

Two bacterial strains identified as Ralstonia picketti (BP 20) and Alcaligenes piechaudii (CZOR L-1B) were isolated from petroleum hydrocarbon-contaminated soil following bioremediation treatment. The surface active properties, e.g. surface tension, emulsification and foamability of their culture filtrates were evaluated. Bacterial cell-surface hydrophobicity (BAH) as measured by analyzing cell affinity towards aliphatic and aromatic compounds was also determinated. The bacteria grew in liquid cultures containing 1% (v/v) of crude oil as carbon and energy source at 30 degrees C under aerobic conditions. The surface tensions were reduced to 61 mN/m and 55 mN/m by Ralstonia picketti and Alcaligenes piechaudii, respectively. The emulsification index (EI24) was almost 100% for all tested compounds except diesel oil. The stability of the emulsions was deteminated at 4 degrees C, 45 degrees C and 65 degrees C. The emulsions were stable at 4 degrees C. Ralstonia picketti was better foam inducer (FV = 50 ml) compared to Alcaligenes piechaudii (FV = 10 ml). The BAH measurements revealed higher adhesion of Alcaligenes piechaudii cells towards different hydrocarbons compared to Ralstonia picketti cells. The strains were found to have a surface hydrophobicity in the following order: aliphatic hydrocarbons, BTEX, and PAHs. The ability to adhere to bulk hydrocarbon is mostly a characteristic of hydrocarbon-degrading bacteria. The strains were found to be better emulsifiers than surface tension reducers. They produce water-soluble extracellular bioemulsifiers. Both bacterial isolates have good properties to use them, mainly in the petroleum industry, e.g. in enhanced oil recovery and in bioremediation processes-primarily due to their emulsification property, i.e. emulsion forming and stabilizing capacity.

Microbial diversity in hydrocarbon-contaminated soil was characterized during a bioremediation project at an oil refinery. The project consisted of isolation and cultivation of microbes on laboratory media and the subsequent characterization of pure isolates. In a lagoon at the Czechowice Oil Refinery, Poland, a biopile with actively and passively aerated sections was constructed and has been operated since 1997. The bioremediation process has been continuously monitored by physical, chemical, and microbiological methods. One hundred and forty nine bacterial and fungal strains were isolated from site soils by standard procedures. Analysis of cultivable microorganisms revealed a diverse microbial population within the cultured isolates. Among isolated strains, Pseudomonas and Chryseomonas genera predominated in the bacterial population while Candida, Fusarium, and Trichophyton dominated the fungal population. This paper describes the application of traditional microbiological methods (plating and microscopic methods) to evaluate cultivable microbial diversity in bioremediated soil.

An automated method for measuring beta-hydroxybutyrate was adapted to the Ciba-Corning 550 Express trade mark random access analyzer. The assay was based on a kinetic reaction utilizing hydroxybutyrate-dehydrogenase. Beta-hydroxybutyrate concentration (mmol/L) was calculated ratiometrically using a 1.0 mmol/l standard. Canine serum, plasma, and urine were used without prior deproteinization and only a 30-microliter sample was required. The method demonstrated good linearity between 0 to 2 mmol/l of beta-hydroxybutyrate. Analytical recovery (accuracy) within these concentrations ranged from 85.8 to 113.3%. Both within-run and day-to-day precision were determined, as was specificity of the assay in the presence of a variety of interfering substances. The automated assay was rapid and economical, with reagent stability maintained for at least 2 weeks at 4 degrees C. This assay can readily be applied toward the assessment of ketoacidosis in dogs, and with further validation, other species.