26 results on '"Brka, M."'
Search Results
2. The genetic diversity and structure of 18 sheep breeds exposed to isolation and selection
- Author
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Ćurković, M., Ramljak, J., Ivanković, S., Mioč, B., Ivanković, A., Pavić, V., Brka, M., Veit-Kensch, C., and Medugorac, I.
- Published
- 2016
- Full Text
- View/download PDF
3. Carcass video imaging – A new tool for beef recording
- Author
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Schild, H.J., primary, Brka, M., additional, and Medjugorac, I., additional
- Published
- 2003
- Full Text
- View/download PDF
4. Frequency and Heritability of Supernumerary Teats in German Simmental and German Brown Swiss Cows
- Author
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Brka, M., Reinsch, N., and Kalm, E.
- Published
- 2002
- Full Text
- View/download PDF
5. Auswirkungen von Hitzestress auf Milchrinder unter zentralkroatischen Klimabedingungen.
- Author
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KUČEVIĆ, D., BRKA, M., BOBIĆ, TINA, KECMAN, JELENA, GANTNER, R., GREGIĆ, MAJA, and GANTNER, VESNA
- Subjects
- *
MILK yield , *LACTATION in cattle , *HEAT of reaction , *ESTRUS , *CATTLE breeding , *SOMATIC cells , *MILKFAT - Abstract
The aim of this research was to analyze the effects of long-lasting heat stress on the milk traits of Simmental and Holstein cows in Central Croatia. For this purpose, 1.9 million of test-day records from 83,086 Simmental and 66,740 Holstein cows were available. The studied traits were: daily milk yield, fat and protein content and somatic cell count in the milk. Data collection took place from January 2005 to December 2012. Based on the temperature-humidity index (THI) was determined whether a mild (THI value = 69-71), moderate (THI value = 71-79) or a strongly heat stress (THI value ≥ 80) existed for the animals. The evaluation (SAS 8.2) included stress-susceptible animals, which at mentioned THI values showed a significant reduction in milk yield. The effects of heat stress were analyzed in cows that had decrease of daily milk yield after heat stress reaction in the two subsequent milk recordings. The results showed extremely unfavorable climatic conditions in central Croatia, which had a negative effect on the investigated milk traits of both cows breeds. The daily milk yield of the cows decreased more at the low than at the higher THI thresholds. In the cows after the second lactation, the milk yield even increased, which may indicate an adaptability of the animals to a long-lasting heat period. The Simmental cows compared to Holstein proved to be more heat-tolerant animals in terms of increased somatic cells count in milk as a result of heat stress. The steady increase of hot days due to climate change requires a sustainable method for long-term heat-combating in cows. The analysis of genetic predisposition of the animals regarding the heat tolerance is necessary here. [ABSTRACT FROM AUTHOR]
- Published
- 2019
6. Polymorphism of cwd susceptible coons at red deer population in Croatia
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Zecevic E, Curik I, Dokso A, Rustempasic A, Cubric-Curik V, Brka M
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animal diseases ,alleles, DNA, genes, genetic polymorphism, genomes, genotypes, haplotypes, polymerase chain reaction, populations, prions, wasting disease - Abstract
Chronic Wasting Disease (CWD) belongs to the group of transmissible spongiform encephalopathy (TSE), caused by prions. CWD is well known in deer population in North America more than 30 years. This disease shortens life period of animals and it is contagious. In this work 10 codons of exon 3 PrP gene has been investigated. As material genomic DNA has been used, and PCR amplification of specific regions of DNA by specially designed primers (forward 5′- ATTTTGCAGATAAGTCATC-3′ and reverse 5′- AGAAGATAATGAAAACAGGAAG-3′) (Peletto et al. 2009) was done. These are the codons that are found in the literature as suspicious for disease occurrence: 26, 78, 95, 96, 98, 116, 132, 136, 138 and 225. Eight genotypes and eight haplotypes have been found. All genotypes were resistant to CWD. Prevailed wild type of alleles, which is understandable considering that for these animals was not present artificial selection.
- Published
- 2013
7. Polymorphism of PrP exon 3 gene in Bosnian autochthonious sheep breed pramenka
- Author
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Zecevic, E., Curik, V. C., Brka, M., and Curik, I.
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Ovis ,Bovidae ,ruminants ,Artiodactyla ,ungulates ,mammals ,vertebrates ,Chordata ,animals ,eukaryotes - Abstract
Transmissible Spongiform Encephalopathy's (TSE) are the group of fatal disease, which is known for more than 100 years. They are contagious inside the species and between different species. They are caused by prions, protein particles, and 250 amino acids long. The most famous TSE in sheep population is scrapie which is a fatal, degenerative disease that affects the nervous systems of sheep and goats. Genetic predisposition for diesis was determined and defined by prion protein gene polymorphism. Main task of this work is estimate PrP gene polymorphism in sheep population of Bosnia and Herzegovina (privorski strain). On the basis of result genetic risk would be estimated, trough definition of different genotypes presented in population. This would be helpful for increasing selection with excluding of undesired genotypes, preventing and decreasing of frequency of disease. This work is based on blood samples taking from sheep population in Bosnia and Herzegovina, DNA extraction from fool blood, PCR amplification, sequencing and defining of genotypes. Part of PrP gene, exon 3 was sequenced for 53 sheep belonging to Bosnian autochthonous breed (pramenka). Analyses has shown that alleles ARQ, ARR and AHQ were predominant with frequencies 45.28%, 36.79% and 16.98% respectively, while VRQ 0.94% allele were rare. Synonymous mutations on codons 231 (R) and codon 237 (L) has shown. The polymorphism of PrP gene in Bosnian sheep breed pramenka was not critical with respect to scrapie susceptibility and with some efforts number of "favorable" genotypes can be increased.
- Published
- 2011
8. The genetic diversity and structure of 18 sheep breeds exposed to isolation and selection
- Author
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Ćurković, M., primary, Ramljak, J., additional, Ivanković, S., additional, Mioč, B., additional, Ivanković, A., additional, Pavić, V., additional, Brka, M., additional, Veit-Kensch, C., additional, and Medugorac, I., additional
- Published
- 2015
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9. POLYMORPHISM OF β-LACTOGLOBULIN IN PRAMENKA SHEEP BREED IN BOSNIA AND HERZEGOVINA.
- Author
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Rustempašić, A., Dokso, A., ZeČević, E., Hodžić, A., Hrković-Porobija, A., Sarić, Z., Miskoska-Milevska, E., Popovski, Z., and Brka, M.
- Subjects
LACTOGLOBULINS ,SHEEP breeds ,SHEEP breeding ,GENETIC polymorphisms ,SHEEP milk - Abstract
The aim of this study was to determinate allele frequency β-lactoglobulin in Pramenka breed sheep in Bosnia and Herzegovina. The DNA was extracted from blood of 283 sheep, collected from four flocks around Sarajevo, Bosnia and Herzegovina. The gene β-lactoglobulin was amplified using polymerase chain reaction - restriction fragment length polymorphism (PCR-RFLP) technique. Two genetic variants (A and B) and three genotypes (AA, AB and BB) of β-lactoglobulin have been identified. Genotype frequencies of β-lactoglobulin were with the following values: AA (0.325), AB (0.445), and BB (0.229), while the frequencies of allele A and B were 0.547 and 0.453 respectively. The highest frequency of genotype AA is present in the location Treskavica (38%), genotype AB in the location Vlašić (52%), while the genotype BB is mostly present in location Bjelašnica (29%). The population of Pramenka breed sheep was in Hardy-Weinberg equilibrium. It is expected that in a future the programs in sheep breeding in Bosnia and Herzegovina certainly would take into account the genetic variants of β-lactoglobulin that could contribute to better production and economic benefit. [ABSTRACT FROM AUTHOR]
- Published
- 2018
10. Genetic diversity and structure of the West Balkan Pramenka sheep types as revealed by microsatellite and mitochondrial DNA analysis
- Author
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Cinkulov, M., Cinkulov, M., Popovski, Z., Porcu, K., Tanaskovska, B., Hodzić, A., Bytyqi, H., Mehmeti, H., Margeta, Vladimir, Djedović, Radica, Hoda, A., Trailović, R., Brka, M., Marković, B., Vazić, B., Vegara, M., Olsaker, I., Kantanen, J., Cinkulov, M., Cinkulov, M., Popovski, Z., Porcu, K., Tanaskovska, B., Hodzić, A., Bytyqi, H., Mehmeti, H., Margeta, Vladimir, Djedović, Radica, Hoda, A., Trailović, R., Brka, M., Marković, B., Vazić, B., Vegara, M., Olsaker, I., and Kantanen, J.
- Abstract
Several different phenotypes of the native Pramenka sheep have been developed in the Balkan region for different environmental and socio-cultural conditions. Animals from seven West Balkan Pramenka sheep types were analysed for 15 microsatellite markers and for mitochondrial DNA (mtDNA) and the results were used to assess genetic variation within and among the types and to infer the genetic population structure of the Pramenka sheep. Mean expected heterozygosity and allelic richness over the microsatellite loci and sheep types were 0.78 and 7.9, respectively. A Bayesian statistical method for estimating hidden genetic structure suggested that a core of the largest panmictic population was formed by Serbian, Kosovan, Bosnian, Montenegrin and Albanian types, while Croatian and Macedonian types comprised two other main populations, respectively. Mitochondrial DNA analysis revealed two mtDNA haplogroups in the Pramenka sheep, B and A, with a frequency of 93.7% and 6.3%, respectively. A total of 60 mtDNA haplotypes were found in 64 animals sequenced, and the mean nucleotide and haplotypic diversities over the types were 0.013 and 0.945, respectively. Molecular analysis suggests that the West Balkan Pramenka sheep types have their origins in two distinct maternal lineages of domestic sheep and different Pramenka phenotypes tend to form few panmictic populations. The Pramenka sheep represents a valuable resource of genetic diversity in sheep.
- Published
- 2008
11. Polymorphism of the kappa-casein gene in two Bosnian autochthonous cattle breeds
- Author
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Brka, M., primary, Hodžić, A., additional, Reinsch, N., additional, Zečević, E. P., additional, Dokso, A., additional, Djedović, R., additional, Rukavina, D., additional, Kapur, L., additional, Vegara, M., additional, Šabanović, M., additional, and Ravić, I., additional
- Published
- 2010
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12. Genetic diversity and structure of the West Balkan Pramenka sheep types as revealed by microsatellite and mitochondrial DNA analysis
- Author
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Ćinkulov, M., primary, Popovski, Z., additional, Porcu, K., additional, Tanaskovska, B., additional, Hodžić, A., additional, Bytyqi, H., additional, Mehmeti, H., additional, Margeta, V., additional, Djedović, R., additional, Hoda, A., additional, Trailović, R., additional, Brka, M., additional, Marković, B., additional, Važić, B., additional, Vegara, M., additional, Olsaker, I., additional, and Kantanen, J., additional
- Published
- 2008
- Full Text
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13. Is there linkage between supernumerary teats in cattle and BTA3 markers?
- Author
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Brka, M., primary, Reinsch, N., additional, and Kalm, E., additional
- Published
- 2002
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14. Multiple-trait genetic analyses of racing Performances of German trotters with disentanglement of genetic and driver effects
- Author
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Röhe, R., primary, Savas, T., additional, Brka, M., additional, Willms, F., additional, and Kalm, E., additional
- Published
- 2001
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15. Determination of the inheritance pattern of hyperthelia in cattle by maximum likelihood analysis 1
- Author
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Brka, M., primary, Reinsch, N., additional, and Kalm, E., additional
- Published
- 2000
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16. Determination of the inheritance pattern of hyperthelia in cattle by maximum likelihood analysis 1.
- Author
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Brka, M., Reinsch, N., and Kalm, E.
- Subjects
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ANIMAL breeding , *ANIMAL genetics - Abstract
Summary A previously published data-set with observations on supernumerary teats (hyperthelia) in dual-purpose Simmental was reanalysed by maximum-likelihood. The data comprised 537 unrelated animals and 614 members of 27 paternal half-sib families with known phenotype of each sire. The frequency of hyperthelia was 58% in unrelated animals, 51% in families with unaffected sire, and 73% in families with affected sires. Six different cases of single-gene inheritance were considered. The highest log-likelihood was obtained for additive inheritance and for a recessive pattern with 100% penetrance for recessive homozygotes and 32% for both other genotypes. Estimates for the gene frequency of the favourable allele were 0.34 and 0.29, respectively. Simple dominance or recessiveness with full or incomplete penetrance could be excluded. The possibility of finding paternal half-sib families with a heterozygous sire as a resource for a mapping experiment seem to be good in German Simmental. [ABSTRACT FROM AUTHOR]
- Published
- 2000
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17. Determination of the inheritance pattern of hyperthelia in cattle by maximum likelihood analysis 1.
- Author
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Brka, M., Reinsch, N., and Kalm, E.
- Subjects
ANIMAL breeding ,ANIMAL genetics - Abstract
Copyright of Journal of Animal Breeding & Genetics is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2000
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18. Polymorphism of β-lactoglobulin in pramenka sheep breed in Bosnia and Herzegovina
- Author
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Rustempašić, A., Dokso, A., Zečević, E., Aida Hodzic, Hrković-Porobija, A., Sarić, Z., Miskoska-Milevska, E., Popovski, Z., and Brka, M.
19. Soil Water Balance Response to Climate Change in Posavina Region
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Jasminka Žurovec, Monika Marković, Selman Edi Kaloper, Sabrija Čadro, Marija Ravlić, Brka, M., Omanović-Mikličanin, E., Karić, L., Falan, V., and Toroman, A.
- Subjects
Current (stream) ,Hydrology ,Soil water balance ,Water balance ,Climate change ,Posavina region ,Sava River ,Evapotranspiration ,Environmental science ,Precipitation ,Snow ,Surface runoff - Abstract
Posavina region represents the area with the most favorable natural conditions for agricultural production in Croatia and Bosnia and Herzegovina. Increase in the air temperature and changes in the amount of rainfall results in changes in evapotranspiration and the values of main water balance elements indicating the need for a precise determination of the current and future state of basic water balance elements, such as soil moisture deficit and the amount of runoff. Linear regression was applied to determine soil water balance response to climate change in Posavina region. The air temperature, precipitation, reference evapotranspiration and water balance components: actual evapotranspiration, total runoff, soil moisture deficit and amount of snow trends were analyzed. Monthly weather data from 4 weather stations, two in Croatia: Slavonski Brod and Gradište ; and two in Bosnia and Herzegovina: Doboj and Gradačac, for the time period of 58 years (1961–2018) were used. The results obtained show increasing trends in annual air temperature (0.032 °C–0.057 °C year−1), sum of precipitation (1.424 mm–2.317 mm year−1), reference evapotranspiration (0.462 mm–4.640 mm year−1), actual evapotranspiration (0.019 mm– 2.190 mm year−1), soil moisture deficit (0.443 mm–2.672 mm year−1) and total runoff (0.286– 2.46 9 mm year−1) series and decreasing trend in the annual amount of snow (0.676–1.664 mm year−1). Results obtained are showing an urgent need to start with climate change adaptation measures and actions to combat the negative impact of climate change in the Posavina region.
- Published
- 2020
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20. Analysis of polymorphisms in the agouti signalling protein (ASIP) and melanocortin 1 receptor (MC1R) genes and association with coat colours in two Pramenka sheep types
- Author
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Luca Fontanesi, Vincenzo Russo, A. Rustempašić, Muhamed Brka, Fontanesi L., Rustempasic A., Brka M., and Russo V.
- Subjects
Genetics ,Coat ,genetic structures ,Haplotype ,Locus (genetics) ,Biology ,PRAMENKA SHEEP ,ASIP ,COAT COLOUR ,Food Animals ,Genetic marker ,MC1R ,Genetic variation ,Animal Science and Zoology ,Genetic variability ,Allele ,POLYMORPHISMS ,Melanocortin 1 receptor - Abstract
Different biogeographical and sociocultural conditions have contributed to develop several West Balkan native sheep populations, most of which are considered as different types of Pramenka sheep. These populations have a wide variety of phenotypes that indirectly indicate a quite high level of genetic variability. Here, we analyzed agouti signalling protein ( ASIP ) and melanocortin 1 receptor ( MC1R ) gene polymorphisms in two Pramenka sheep populations (Dubian and Privorian) originated in Bosnia and Herzegovina in which coat colours and colour patterns are not fixed traits and evaluated association between these genes and coat colours of the investigated sheep. All genotyped animals carried only wild type MC1R haplotypes and no association between variability of this gene and coat colour was observed. Association between the absence of duplicated ASIP copy allele and almost complete dark (black/grey) coat colour was highly significant (Fisher exact test: P = 5.872E−09). These results confirmed the role of the Agouti locus in affecting coat colour in sheep. The six animals with complete concordance between absence of duplicated copy allele and extended black/grey coat colour may be homozygous for recessive nonagouti black alleles ( A a ), as indicated in other breeds. Despite the highly significant association observed between absence of duplicated allele and extended dark coat colour in these Pramenka sheep, association was not complete. One Dubian sheep with the same coat colour phenotype was heterozygous with a duplicated and a non duplicated allele. Moreover, spotted black regions were present in all animals carrying at least a duplicated ASIP allele. These results indicated that other genetic factors or mechanisms (additional uncharacterized ASIP alleles, other loci, or epistatic interaction with other genes) might be involved in affecting coat colours (white vs dark) and different spotted patterns in sheep. This study could represent an example of eploitation of native genetic resources to identify and verify association between DNA markers and phenotypic traits.
- Published
- 2012
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21. Genetic Parameters for Functional Longevity, Type Traits, and Production in the Serbian Holstein.
- Author
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Djedović R, Vukasinovic N, Stanojević D, Bogdanović V, Ismael H, Janković D, Gligović N, Brka M, and Štrbac L
- Abstract
In this study, the authors focused on the evaluation of the genetic parameters of longevity, milk yield traits, and type traits in dairy cattle populations in the Republic of Serbia. The total dataset used consisted of production records and pedigree data for 32,512 Holstein cows that calved from 1981 to 2015. The animal model was applied to determine the variance and covariance components and genetic parameters of the analyzed traits by applying the restricted maximum likelihood (REML) approach and using the programs VCE6 and PEST. The heritability of longevity traits was estimated using the Survival Kit V6.0 software package. Variance and covariance were estimated for five production traits: milk yield (MY), fat yield (FY), protein yield (PY), milk fat content (MC), and protein content (PC), and three longevity traits: length of productive life (LPL), lifetime milk yield (LMY), and the number of lactations achieved (NL) as well as for 18 standard type traits. Heritabilities for the milk, fat, and protein yield traits were 0.20 (MY), 0.15 (FY), and 0.19 (PY), respectively. The estimated coefficients of heritability for the longevity traits were higher when using the Weibull proportional hazards model compared to the traditional linear methods and ranged from 0.08 for NL to 0.10 for LPL. Heritability values for the type traits varied from a low of 0.10 (RLSsv-rear legs set-side view) to medium values of 0.32 (ST-stature). Genetic correlations were found between MY and the following longevity traits: LPL, LMY, and NL with values of -0.18, -0.11, and -0.09, respectively. Genetic correlations were found between MY and a number of linear type traits and varied from 0.02 (between MY and RUH-rear udder height) to 0.28 (between MY and FUA-fore udder attachment). Genetic correlations between the 18 investigated type traits ranged from -0.33 between TL (top line) and RTP (rear teats position) to 0.71 between AN (angularity) and RUH (rear udder height). Genetic correlations between most linear type traits and longevity traits (LPL, LMY, and NL) were generally negative and very low. The highest positive genetic correlation was found between UD and LPL (r
xy = 0.38)., Competing Interests: The authors declare no conflicts of interest.- Published
- 2023
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22. Large-scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression.
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Cubric-Curik V, Novosel D, Brajkovic V, Rota Stabelli O, Krebs S, Sölkner J, Šalamon D, Ristov S, Berger B, Trivizaki S, Bizelis I, Ferenčaković M, Rothammer S, Kunz E, Simčič M, Dovč P, Bunevski G, Bytyqi H, Marković B, Brka M, Kume K, Stojanović S, Nikolov V, Zinovieva N, Schönherz AA, Guldbrandtsen B, Čačić M, Radović S, Miracle P, Vernesi C, Curik I, and Medugorac I
- Abstract
The contribution of domestic cattle in human societies is enormous, making cattle, along with other essential benefits, the economically most important domestic animal in the world today. To expand existing knowledge on cattle domestication and mitogenome diversity, we performed a comprehensive complete mitogenome analysis of the species (802 sequences, 114 breeds). A large sample was collected in South-east Europe, an important agricultural gateway to Europe during Neolithization and a region rich in cattle biodiversity. We found 1725 polymorphic sites (810 singletons, 853 parsimony-informative sites and 57 indels), 701 unique haplotypes, a haplotype diversity of 0.9995 and a nucleotide diversity of 0.0015. In addition to the dominant T
3 and several rare haplogroups (Q, T5 , T4 , T2 and T1 ), we have identified maternal line in Austrian Murbodner cattle that possess surviving aurochs' mitochondria haplotype P1 that diverged prior to the Neolithization process. This is convincing evidence for rare female-mediated adaptive introgression of wild aurochs into domesticated cattle in Europe. We revalidated the existing haplogroup classification and provided Bayesian phylogenetic inference with a more precise estimated divergence time than previously available. Occasionally, classification based on partial mitogenomes was not reliable; for example, some individuals with haplogroups P and T5 were not recognized based on D-loop information. Bayesian skyline plot estimates (median) show that the earliest population growth began before domestication in cattle with haplogroup T2 , followed by Q (~10.0-9.5 kyBP), whereas cattle with T3 (~7.5 kyBP) and T1 (~3.0-2.5 kyBP) expanded later. Overall, our results support the existence of interactions between aurochs and cattle during domestication and dispersal of cattle in the past, contribute to the conservation of maternal cattle diversity and enable functional analyses of the surviving aurochs P1 mitogenome., Competing Interests: None declared., (© 2021 The Authors. Evolutionary Applications published by John Wiley & Sons Ltd.)- Published
- 2021
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23. Impact of COVID-19 confinement on eating behaviours across 16 European countries: The COVIDiet cross-national study.
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Molina-Montes E, Uzhova I, Verardo V, Artacho R, García-Villanova B, Jesús Guerra-Hernández E, Kapsokefalou M, Malisova O, Vlassopoulos A, Katidi A, Koroušić Seljak B, Modic R, Eftimov T, Hren I, Valenčič E, Šatalić Z, Panjkota Krbavčić I, Vranešić Bender D, Giacalone D, Bom Frøst M, Konic Ristic A, Milesevic J, Nikolic M, Kolay E, Güney M, Kriaucioniene V, Czlapka-Matyasik M, Bykowska-Derda A, Kujundzic E, Taljić I, Brka M, Spiroski I, Cunha Velho S, Patrícia Sousa Pinto S, Nascimento Monteiro I, Adriana Pereira J, Dolores Ruíz-López M, and Rodríguez-Pérez C
- Abstract
We aimed to evaluate the changes in eating behaviours of the adult population across 16 European countries due to the COVID-19 confinement and to evaluate whether these changes were somehow related to the severity of the containment measures applied in each country. An anonymous online self-reported questionnaire on socio-demographic characteristics, validated 14-items Mediterranean diet (MedDiet) Adherence Screener (MEDAS) as a reference of a healthy diet, eating and lifestyle behaviours prior to and during the COVID-19 confinement was used to collect data. The study included an adult population residing in 16 European countries at the time of the survey. Aggregated Stringency Index (SI) score, based on data from the Oxford COVID-19 Government Response Tracker, was calculated for each country at the time the questionnaire was distributed (range: 0-100). A total of 36,185 participants completed the questionnaire (77.6% female, 75.2% with high educational level and 42.7% aged between 21 and 35 years). In comparison to pre-confinement, a significantly higher adherence to the MedDiet during the confinement was observed across all countries (overall MEDAS score prior to- and during confinement: 5.23 ± 2.06 vs. 6.15 ± 2.06; p < 0.001), with the largest increase seen in Greece and North Macedonia. The highest adherence to MedDiet during confinement was found in Spain and Portugal (7.18 ± 1.84 and 7.34 ± 1.95, respectively). Stricter contingency restrictions seemed to lead to a significantly higher increase in the adherence to the MedDiet. The findings from this cross-sectional study could be used to inform current diet-related public health guidelines to ensure optimal nutrition is followed among the population, which in turn would help to alleviate the current public health crisis., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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24. Conservation of a domestic metapopulation structured into related and partly admixed strains.
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Ramljak J, Bunevski G, Bytyqi H, Marković B, Brka M, Ivanković A, Kume K, Stojanović S, Nikolov V, Simčič M, Sölkner J, Kunz E, Rothammer S, Seichter D, Grünenfelder HP, Broxham ET, Kugler W, and Medugorac I
- Subjects
- Alleles, Animals, Breeding, Geography, Models, Genetic, Multivariate Analysis, Phylogeny, Polymorphism, Single Nucleotide genetics, Population Density, Animals, Domestic genetics, Cattle genetics, Conservation of Natural Resources, Gene Pool, Genetics, Population
- Abstract
Preservation of genetic diversity is one of the most pressing challenges in the planetary boundaries concept. Within this context, we focused on genetic diversity in a native, unselected and highly admixed domesticated metapopulation. A set of 1,828 individuals from 60 different cattle breeds was analysed using a medium density SNP chip. Among these breeds, 14 Buša strains formed a metapopulation represented by 350 individuals, while the remaining 46 breeds represented the global cattle population. Genetic analyses showed that the scarcely selected and less differentiated Buša metapopulation contributed a substantial proportion (52.6%) of the neutral allelic diversity to this global taurine population. Consequently, there is an urgent need for synchronized maintenance of this highly fragmented domestic metapopulation, which is distributed over several countries without sophisticated infrastructure and highly endangered by continuous replacement crossing as part of the global genetic homogenization process. This study collected and evaluated samples, data and genomewide information and developed genome-assisted cross-border conservation concepts. To detect and maintain genetic integrity of the metapopulation strains, we designed and applied a composite test that combines six metrics based on additive genetic relationships, a nearest neighbour graph and the distribution of semiprivate alleles. Each metric provides distinct information components about past admixture events and offers an objective and powerful tool for the detection of admixed outliers. The here developed conservation methods and presented experiences could easily be adapted to comparable conservation programmes of domesticated or other metapopulations bred and kept in captivity or under some other sort of human control., (© 2018 John Wiley & Sons Ltd.)
- Published
- 2018
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25. Conservation priorities of genetic diversity in domesticated metapopulations: a study in taurine cattle breeds.
- Author
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Medugorac I, Veit-Kensch CE, Ramljak J, Brka M, Marković B, Stojanović S, Bytyqi H, Kochoski L, Kume K, Grünenfelder HP, Bennewitz J, and Förster M
- Abstract
We estimated neutral diversity of 21 European cattle breeds with 105 microsatellites. Nine of them resembled unselected Balkan Buša strains with diffuse breeding barriers and the 12 others were strongly differentiated, isolated breeds. Because of the impact of neutral genetic diversity on long-term population adaptive capacity, we discuss the long-term outcome of different conservation priorities in a subdivided metapopulation of the investigated cattle breeds. The optimal contribution to a pool of total genetic diversity allocated more than 95% of long-term relevant neutral diversity to virtually unselected strains of the Balkan Buša, while the maximization of total variance preferred inbred breeds. Current artificial selection methods, such as genomic selection sped up and a recovery of underestimated traits becomes quickly impossible. We emphasize that currently neutral and even deleterious alleles might be required for future genotypes in sustainable and efficient livestock breeding and production systems of a 21st century. We provide cumulative evidences that long-term survival relies on genetic complexity and complexity relies on allelic diversity. Our results suggest that virtually unselected, nonuniform strains harbor a crucial proportion of neutral diversity and should be conserved with high global priority. As one example, we suggest a cooperative maintenance of the nondifferentiated, highly fragmented, and fast vanishing metapopulation of Balkan Buša.
- Published
- 2011
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26. Research on spontaneously emerged chromosomal aberrations in the periphery blood lymphocytes in cattle ('Busa' breed).
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Hasanbasić D, Rukavina D, Hodzić A, Brka M, Vegara M, and Hamamdzić M
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- Animals, Cattle, Chromatids metabolism, Chromosomes ultrastructure, Cytogenetics methods, Female, Karyotyping, Male, Metaphase, Chromosome Aberrations, Lymphocytes metabolism
- Abstract
Knowledge of spontaneous aberrations, namely, of their frequency in non-irradiated cells is of paramount importance not only in cytogenetic research, but also in contemporary animal production. The paper deals with research on spontaneously emerged chromosomal aberrations in the peripheral blood lymphocytes in the cattle of 'Busa' breed. To obtain metaphase chromosomes the conventional method of lymphocyte cultivation was used, albeit slightly modified and adapted to the examined animals and the laboratory conditions. The research findings indicate that a certain percent of spontaneously emerged chromosomal aberrations of chromatid type (gap and break) have been found in the peripheral blood lymphocytes in the cattle of 'Busa' breed.
- Published
- 2007
- Full Text
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