88 results on '"Buczek M"'
Search Results
2. Properties of PZT thick films made on LTCC
- Author
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Golonka, L.J., Buczek, M., Hrovat, M., Belavič, D., Dziedzic, A., Roguszczak, H., and Zawada, T.
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- 2005
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3. MHC, parasites and antler development in red deer: no support for the Hamilton & Zuk hypothesis
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Buczek, M., Okarma, H., Demiaszkiewicz, A. W., and Radwan, J.
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- 2016
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4. Structural Changes in New Rapidly-Quenched Finemet Type and Hitperm Type Alloys
- Author
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Staszewski, M., primary, Woch, M., additional, Kolano-Burian, Aleksandra, additional, Barszcz, J., additional, and Buczek, M., additional
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- 2007
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5. ALTERED NEONATAL RAT BRAIN DEVELOPMENT FOLLOWING FETAL HYPOXIA.
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Macklin, W. B., DeWeese, D., Duchala, C. S., Douglas, A., Pundik, S., Buczek, M., and Lust, W. D.
- Published
- 1997
6. Cytoplasmic PML promotes TGF-β-associated epithelial–mesenchymal transition and invasion in prostate cancer
- Author
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Buczek, M E, primary, Miles, A K, additional, Green, W, additional, Johnson, C, additional, Boocock, D J, additional, Pockley, A G, additional, Rees, R C, additional, Hulman, G, additional, van Schalkwyk, G, additional, Parkinson, R, additional, Hulman, J, additional, Powe, D G, additional, and Regad, T, additional
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- 2015
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7. The helicase HAGE prevents interferon-α-induced PML expression in ABCB5+ malignant melanoma-initiating cells by promoting the expression of SOCS1
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Mathieu, M G, primary, Miles, A K, additional, Ahmad, M, additional, Buczek, M E, additional, Pockley, A G, additional, Rees, R C, additional, and Regad, T, additional
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- 2014
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8. SU-E-T-103: Radiochromic Film Measurement of Nanoparticle Radiation Dose Enhancement
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Buczek, M, primary, Lawes, G, additional, Snyder, M, additional, Hillman, Y, additional, and Rakowski, J, additional
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- 2013
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9. BREEDING OF APPLE ROOTSTOCKS IN POLAND - THE LATEST RESULTS
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Zurawicz, E., primary, Bielicki, P., additional, Czynczyk, A., additional, Bartosiewicz, B., additional, Buczek, M., additional, and Lewandowski, M., additional
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- 2011
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10. RESULTS ON THE USE OF 3,5,6-TPA AGAINST PREHARVEST FRUIT DROP IN 'CONFERENCE' PEAR
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Basak, A., primary and Buczek, M., additional
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- 2010
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11. THE EFFECTIVENESS OF 3,5,6-TPA USED AGAINST PRE-HARVEST FRUIT DROP IN APPLE
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Basak, A., primary and Buczek, M., additional
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- 2010
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12. M-7 Influence of Laser Melting on Surface Layer Properties of Titanium Alloy Ti6Al4V
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Ossowska, A., primary, Zielinski, A., additional, and Buczek, M., additional
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- 2010
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13. Properties of Surface Layers of Titanium Alloy TI6AL4V After Laser Melting Processes
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Ossowska, A., primary, Zieliński, A., additional, and Buczek, M., additional
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- 2010
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14. P1.017 Treatment of chorea in Huntington disease with oral non-ergot dopamine agonists
- Author
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Gunzler, S., primary and Buczek, M., additional
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- 2009
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15. Free edge strain concentrations in real composite laminates Experimental-theoretical correlation
- Author
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Herakovich, C. T, Post, D, Buczek, M. B, and Czarnek, R
- Subjects
Structural Mechanics - Abstract
The magnitude of the maximum shear strain at the free edge of axially loaded theta (2)/theta(2)(s) and (+ or - theta(2) (s) composite laminates was investigated experimentally and numerically to ascertain the actual value of strain concentration in resin matrix laminates and to determine the accuracy of finite element results. Experimental results using moire interferometry show large, but finite, shear strain concentrations at the free edge of graphite-epoxy and graphite-polyimide laminates. Comparison of the experimental results with those obtained using several different finite element representations showed that a four node isoparametric finite element provided the best and most trouble free numerical results. The results indicate that the ratio of maximum shear strain at the free edge to applied axial strain varies with fiber orientation and does not exceed nine for the most critical angle which is 15 deg.
- Published
- 1985
16. A normal stress criterion for crack extension direction in orthotropic composite materials
- Author
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Buczek, M. B and Herakovich, C. T
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Structural Mechanics - Abstract
A criterion for predicting the direction of crack extension in orthotropic composite materials is presented. The criterion is based upon the normal stress and the anisotropic tensile strength on arbitrary planes about the tip of a crack. Results are obtained, via finite element solutions, for: (1) isotropic mixed mode fracture, (2) cracks in unidirectional off-axis slotted composite tensile coupons and (3) cracks in cross plied laminates. Comparisons are made with other theories and experimental results.
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- 1985
17. Free edge strain concentrations in real composite laminates: Experimental-theoretical correlation
- Author
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Herakovich, C. T, Post, D, Buczek, M. B, and Czarnek, R
- Subjects
Composite Materials - Abstract
The magnitude of the maximum shear strain at the free edge of axially loaded theta (2)/-theta(2)(s) and (+ or - theta(2) (s) composite laminates was investigated experimentally and numerically to ascertain the actual value of strain concentration in resin matrix laminates and to determine the accuracy of finite element results. Experimental results using moire interferometry show large, but finite, shear strain concentrations at the free edge of graphite-epoxy and graphite-polyimide laminates. Comparison of the experimental results with those obtained using several different finite element representations showed that a four node isoparametric finite element provided the best and most trouble free numerical results. The results indicate that the ratio of maxium shear strain at the free edge to applied axial strain varies with fiber orientation and does not exceed nine for the most critical angle which is 15 deg.
- Published
- 1984
18. CLFE2D: A generalized plane strain finite element program laminated composites subject to mechanical and hygrothermal loading
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Buczek, M. B, Gregory, M. A, and Herakovich, C. T
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Structural Mechanics - Abstract
CLFE2D is a two dimensional generalized plane strain finite element code, using a linear, four node, general quadrilateral, isoparametric element. The program is developed to calculate the displacements, strains, stresses, and strain energy densities in a finite width composite laminate. CLFE2D offers any combination of the following load types: nodal displacements, nodal forces, uniform normal strain, or hygrothermal. The program allows the user to input one set of three dimensional orthotropic material properties. The user can then specify the angle of material principal orientation for each element in the mesh. Output includes displacements, stresses, strains and strain densities at points selected by the user. An option is also available to plot the underformed and deformed finite element meshes.
- Published
- 1983
19. Direction of crack growth in fibrous composites
- Author
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Buczek, M. B and Herakovich, C. T
- Subjects
Composite Materials - Abstract
A model for predicting the direction of crack growth in resin matrix composite materials is presented. The model is based upon the normal stress and the anisotropic tensile strength on arbitrary planes about the tip of a crack. The model is incorporated into a finite element solution which predicts energy release rates in addition to the direction of crack growth. Results are obtained for cracks in unidirectional off-axis slotted tensile coupons. Comparisons are made with other theories and experimental results.
- Published
- 1983
20. Finite element models for predicting crack growth characteristics in composite materials
- Author
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Buczek, M. B and Herakovich, C. T
- Subjects
Metallic Materials - Abstract
Two dimensional and quasi-three dimensional, linear elastic finite element models for the prediction of crack growth characteristics, including crack growth direction, in laminated composite materials are presented. Mixed mode crack growth in isotropic materials, unidirectional and laminated composites is considered. The modified crack closure method is used to predict the applied load level for crack extension and two failure theories, modifications of the point stress and the Hashin failure criteria, are proposed to predict the direction of crack extension in composites. Comparisons are made with the Tsai-Wu failure criterion and the Sih strain energy density criterion as well as with experimental results. It is shown that the modified versions of point stress and Hashin criteria compare well with experiment.
- Published
- 1982
21. USE OF BIOREGULATORS TO HASTEN SWEET CHERRY CANOPY DEVELOPMENT
- Author
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Jacyna, T., primary and Buczek, M., additional
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- 2008
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22. Cytoplasmic PML promotes TGF-β-associated epithelial–mesenchymal transition and invasion in prostate cancer
- Author
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Buczek, M E, Miles, A K, Green, W, Johnson, C, Boocock, D J, Pockley, A G, Rees, R C, Hulman, G, van Schalkwyk, G, Parkinson, R, Hulman, J, Powe, D G, and Regad, T
- Abstract
Epithelial–mesenchymal transition (EMT) is a key event that is involved in the invasion and dissemination of cancer cells. Although typically considered as having tumour-suppressive properties, transforming growth factor (TGF)-β signalling is altered during cancer and has been associated with the invasion of cancer cells and metastasis. In this study, we report a previously unknown role for the cytoplasmic promyelocytic leukaemia (cPML) tumour suppressor in TGF-β signalling-induced regulation of prostate cancer-associated EMT and invasion. We demonstrate that cPML promotes a mesenchymal phenotype and increases the invasiveness of prostate cancer cells. This event is associated with activation of TGF-β canonical signalling pathway through the induction of Sma and Mad related family 2 and 3 (SMAD2 and SMAD3) phosphorylation. Furthermore, the cytoplasmic localization of promyelocytic leukaemia (PML) is mediated by its nuclear export in a chromosomal maintenance 1 (CRM1)-dependent manner. This was clinically tested in prostate cancer tissue and shown that cytoplasmic PML and CRM1 co-expression correlates with reduced disease-specific survival. In summary, we provide evidence of dysfunctional TGF-β signalling occurring at an early stage in prostate cancer. We show that this disease pathway is mediated by cPML and CRM1 and results in a more aggressive cancer cell phenotype. We propose that the targeting of this pathway could be therapeutically exploited for clinical benefit.
- Published
- 2016
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23. Manufacturing of HTS composite wire for a superconducting power transmission cable demonstration
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Buczek, M., primary, Masur, L.J., additional, Miles, P.K., additional, Sivo, F., additional, Marlowe, D., additional, Podtburg, E.R., additional, Parker, D.R., additional, Fleshler, S., additional, Scudiere, J.D., additional, Metra, P., additional, Nassi, M., additional, Rahman, M., additional, and Von Dollen, D.W., additional
- Published
- 1997
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24. Area collapse algorithm computing new curve of 2D geometric objects
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Buczek Michał Mateusz
- Subjects
shape analysis ,Polygon collapse ,medial axis ,geometry processing ,spatial database ,Cartography ,GA101-1776 - Abstract
The processing of cartographic data demands human involvement. Up-to-date algorithms try to automate a part of this process. The goal is to obtain a digital model, or additional information about shape and topology of input geometric objects. A topological skeleton is one of the most important tools in the branch of science called shape analysis. It represents topological and geometrical characteristics of input data. Its plot depends on using algorithms such as medial axis, skeletonization, erosion, thinning, area collapse and many others. Area collapse, also known as dimension change, replaces input data with lower-dimensional geometric objects like, for example, a polygon with a polygonal chain, a line segment with a point.
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- 2017
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25. The Central Nervous System in Deaf Adolescents.
- Author
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Sekula, J., Piorunska, K., Korczowska, B., and Buczek, M.
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- 1985
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26. Grain Refinement of Titanium Alloys.
- Author
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RMI CO NILES OHIO RESEARCH AND DEVELOPMENT DEPT, Buczek,M. J., Hall,G. S., Seagle,S. R., Bomberger,H. B., RMI CO NILES OHIO RESEARCH AND DEVELOPMENT DEPT, Buczek,M. J., Hall,G. S., Seagle,S. R., and Bomberger,H. B.
- Abstract
The objective of this program was to determine the optimum amounts of yttrium added either as the oxide or element for grain refinement to commercial Ti-6Al-4V and Ti-38-6-44 titanium alloys and establish the effects on subsequent mechanical behavior and sonic inspectability. The properties of cast 8-inch-diameter ingots as well as 3-inch bar processed from these ingots were evaluated at yttrium contents up to 0.1 percent. Nearly all the mechanical property data were obtained on alloys containing 0.03 percent yttrium. At this level, significant grain refinement was not observed in Ti-38-6-44 although improved sonic inspectability, higher transverse ductility and improved stress-corrosion resistance were observed. At the same 0.03 percent yttrium content, the recrystallized Ti-6Al-4V beta grain size was reduced and improved sonic inspectability and ductility were obtained in wrought and cast products.
- Published
- 1974
27. Profile of chemical composition of Rosa pomifera 'Karpatia' fruits,Charakterystyka składu chemicznego owoców rosa pomifera 'Karpatia'
- Author
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Milala, J., Michał Sójka, Król, K., and Buczek, M.
28. Clinical and biochemical factors for response to aspirin desensitization in aspirin-induced asthma patients – pilot study
- Author
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Ke, Tyrak, Mejza F, Buczek M, Cholewa A, Wolny A, Pędzik I, Ignacak M, Ewa Konduracka, Kupryś-Lipińska I, Majda A, Oleś K, Sładek K, Kuna P, and Mastalerz L
- Subjects
plwocina indukowana ,induced sputum ,aspirin ,astma ,nasal lavage ,kwas acetylosalicylowy ,popłuczyny nosowe ,asthma
29. Application of Laser Scanning for Creating Geological Documentation
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Buczek Michał, Paszek Martyna, and Szafarczyk Anna
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intensity ,terrestrial laser scanning ,geological cross-section ,geological profile ,Environmental sciences ,GE1-350 - Abstract
A geological documentation is based on the analyses obtained from boreholes, geological exposures, and geophysical methods. It consists of text and graphic documents, containing drilling sections, vertical crosssections through the deposit and various types of maps. The surveying methods (such as LIDAR) can be applied in measurements of exposed rock layers, presented in appendices to the geological documentation. The laser scanning allows obtaining a complete profile of exposed surfaces in a short time and with a millimeter accuracy. The possibility of verifying the existing geological cross-section with laser scanning was tested on the example of the AGH experimental mine. The test field is built of different lithological rocks. Scans were taken from a single station, under favorable measuring conditions. The analysis of the signal intensity allowed to divide point cloud into separate geological layers. The results were compared with the geological profiles of the measured object. The same approach was applied to the data from the Vietnamese hard coal open pit mine Coc Sau. The thickness of exposed coal bed deposits and gangue layers were determined from the obtained data (point cloud) in combination with the photographs. The results were compared with the geological cross-section.
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- 2018
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30. THE SEPARATION OF CERTAIN RADIOISOTOPES FROM A FISSION PRODUCTS SOLUTION. III. THE SEPARATION OF $sup 95$Zr AND $sup 95$Nb.
- Author
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Buczek, M
- Published
- 1969
31. Implementing high-throughput insect barcoding in microbiome studies: impact of non-destructive DNA extraction on microbiome reconstruction.
- Author
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Andriienko V, Buczek M, Meier R, Srivathsan A, Łukasik P, and Kolasa MR
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- Animals, DNA, Bacterial genetics, Bacteria genetics, Bacteria isolation & purification, Bacteria classification, Polymerase Chain Reaction methods, Biodiversity, High-Throughput Nucleotide Sequencing methods, DNA Barcoding, Taxonomic methods, Microbiota genetics, Insecta microbiology, Insecta genetics, RNA, Ribosomal, 16S genetics
- Abstract
Background: Symbiotic relationships with diverse microorganisms are crucial for many aspects of insect biology. However, while our understanding of insect taxonomic diversity and the distribution of insect species in natural communities is limited, we know much less about their microbiota. In the era of rapid biodiversity declines, as researchers increasingly turn towards DNA-based monitoring, developing and broadly implementing approaches for high-throughput and cost-effective characterization of both insect and insect-associated microbial diversity is essential. We need to verify whether approaches such as high-throughput barcoding, a powerful tool for identifying wild insects, would permit subsequent microbiota reconstruction in these specimens., Methods: High-throughput barcoding ("megabarcoding") methods often rely on non-destructive approaches for obtaining template DNA for PCR amplification by leaching DNA out of insect specimens using alkaline buffers such as HotSHOT. This study investigated the impact of HotSHOT on microbial abundance estimates and the reconstructed bacterial community profiles. We addressed this question by comparing quantitative 16S rRNA amplicon sequencing data for HotSHOT-treated or untreated specimens of 16 insect species representing six orders and selected based on the expectation of limited variation among individuals., Results: We find that in 13 species, the treatment significantly reduced microbial abundance estimates, corresponding to an estimated 15-fold decrease in amplifiable 16S rRNA template on average. On the other hand, HotSHOT pre-treatment had a limited effect on microbial community composition. The reconstructed presence of abundant bacteria with known significant effects was not affected. On the other hand, we observed changes in the presence of low-abundance microbes, those close to the reliable detection threshold. Alpha and beta diversity analyses showed compositional differences in only a few species., Conclusion: Our results indicate that HotSHOT pre-treated specimens remain suitable for microbial community composition reconstruction, even if abundance may be hard to estimate. These results indicate that we can cost-effectively combine barcoding with the study of microbiota across wild insect communities. Thus, the voucher specimens obtained using megabarcoding studies targeted at characterizing insect communities can be used for microbiome characterizations. This can substantially aid in speeding up the accumulation of knowledge on the microbiomes of abundant and hyperdiverse insect species., Competing Interests: The authors declare that they have no competing interests., (© 2024 Andriienko et al.)
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- 2024
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32. Pinpointing the microbiota of tardigrades: What is really there?
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Surmacz B, Stec D, Prus-Frankowska M, Buczek M, Michalczyk Ł, and Łukasik P
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- Animals, Phylogeny, DNA, Bacterial genetics, Sequence Analysis, DNA methods, Tardigrada, Microbiota genetics, RNA, Ribosomal, 16S genetics, Bacteria classification, Bacteria genetics, Bacteria isolation & purification, Symbiosis
- Abstract
Microbiota are considered significant in the biology of tardigrades, yet their diversity and distribution remain largely unexplored. This is partly due to the methodological challenges associated with studying the microbiota of small organisms that inhabit microbe-rich environments. In our study, we characterized the microbiota of 31 species of cultured tardigrades using 16S rRNA amplicon sequencing. We employed various sample preparation strategies and multiple types of controls and estimated the number of microbes in samples using synthetic DNA spike-ins. We also reanalysed data from previous tardigrade microbiome studies. Our findings suggest that the microbial communities of cultured tardigrades are predominantly composed of bacterial genotypes originating from food, medium, or reagents. Despite numerous experiments, we found it challenging to identify strains that were enriched in certain tardigrades, which would have indicated likely symbiotic associations. Putative tardigrade-associated microbes rarely constituted more than 20% of the datasets, although some matched symbionts identified in other studies. We also uncovered serious contamination issues in previous tardigrade microbiome studies, casting doubt on some of their conclusions. We concluded that tardigrades are not universally dependent on specialized microbes. Our work underscores the need for rigorous safeguards in studies of the microbiota of microscopic organisms and serves as a cautionary tale for studies involving samples with low microbiome abundance., (© 2024 John Wiley & Sons Ltd.)
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- 2024
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33. Effect of passive ankle movement in the sitting position on the symptoms of chronic venous insufficiency with long-term observation.
- Author
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Wnuk BR, Ziaja D, Buczek M, Ziaja K, and Banyś M
- Subjects
- Humans, Middle Aged, Aged, Adult, Ankle, Chronic Disease, Lower Extremity, Sitting Position, Venous Insufficiency
- Abstract
Background: Chronic venous insufficiency (CVI) is the most common vascular disease. One major risk factor for its development is either long-term sitting or standing in the same position and the nature of the work performed., Objectives: This study aims to assess the effectiveness of passive ankle movement in the sitting position performed using the Bella Vena robot for the symptoms of CVI with long-term observation., Material and Methods: A group of 58 patients (mean age: 59.69 ±14.59 years) with CVI in CEAP (Clinical (C), Etiological (E), Anatomical (A), and Pathophysiological (P)) classification categories 2 and 3, and a group of 37 (mean age: 51.49 ±14.86 years) healthy volunteers performing sedentary work for at least 6 h during the working day were enrolled into the study. The total duration of observation lasted 8 months (8 visits), during which the following parameters were assessed at the beginning and end of this period: pain intensity (according to the visual analogue scale (VAS)), level of saturation on the toe, pulse rate, and lower limb Doppler ultrasound evaluation of reflux parameters., Results: The exercises used in people with CVI resulted in a significant reduction (p ≤ 0.01) in the occurrence of symptoms. Among all respondents, after 8 months of exercise, a significant reduction in pain level according to the VAS of the lower limbs, an improvement in saturation at the toe level, and a reduction in venous reflux was recorded (p ≤ 0.05)., Conclusions: Home exercises with the use of an automatic exercise rehabilitation device alleviated significant symptoms in patients with CVI and improved the calf muscle pump.
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- 2024
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34. Ivermectin decreases parasite load, testosterone, and potentially antler length in a group of captive red deer males (Cervus elaphus).
- Author
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Esattore B, Buczek M, Dušek A, Kotrba R, Pluháček J, Ceacero F, Komárková M, Bartošová J, Radwan J, and Bartoš L
- Subjects
- Female, Male, Animals, Testosterone pharmacology, Ivermectin pharmacology, Parasite Load veterinary, Antlers, Deer
- Abstract
Secondary sex traits (SSTs) can favour males in intra-sexual competition, allowing females to reliably assess their quality. They can also be connected to other aspects of fitness, such as resistance to parasites and pathogens, as parasites have negative effects on the development of SSTs. Antlers are one of the most recognizable examples of SSTs whose development is regulated by testosterone and reflects the actual condition of the bearer. Elevated testosterone can exaggerate the size of SSTs while impairing the function of the immune system ("The Immunocompetence Handicap Hypothesis") posing a trade-off between antler development and immune function. In this study, we experimentally manipulated the parasite load in captive red deer (Cervus elaphus) males with Ivermectin during antler development for two consecutive years. Expecting an inverse proportionality between parasite load and antler size, we hypothesized the treated deer to have larger antlers than the untreated ones. Our results showed that, following the immunocompetence handicap hypothesis, parasite load was positively associated with testosterone levels. However, the application of Ivermectin suppressed the parasite load of the treated animals but did not lead to the development of larger antlers. Instead, it significantly suppressed the concentration of testosterone in the treated animals, whilst the animals that had higher testosterone also had the highest parasite load. Our findings show that Ivermectin can potentially decrease the levels of testosterone and, consequently, antler size. These findings have important implications for the management of captive populations, especially in contexts where the development of large trophies is desired., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
- Published
- 2024
- Full Text
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35. Vascular surgery study of the CGuard MicroNet-covered stent in patients with indication to carotid revascularization: POLGUARD.
- Author
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Szkolka L, Lyko-Morawska D, Balocco S, Bedkowski L, Buczek M, Medon E, Wolkowski M, Dryjski M, and Kuczmik W
- Subjects
- Male, Humans, Middle Aged, Aged, Female, Constriction, Pathologic complications, Treatment Outcome, Stents adverse effects, Vascular Surgical Procedures adverse effects, Carotid Stenosis complications, Carotid Stenosis diagnostic imaging, Carotid Stenosis surgery, Stroke etiology, Stroke prevention & control
- Abstract
Background: In a recent randomized study, MicroNet-covered stent (CGuard) significantly reduced procedural and post-procedural cerebral embolism in relation to a single-layer CREST study carotid stent, but real-life clinical practice data are limited. The aim is to prospectively assess clinical outcomes of CGuard as a routine revascularization tool for patients with indication to carotid revascularization., Methods: From April 2019 to November 2021, 204 elective patients (age 71.0±7.1years, 69.6% males, 21.7% symptomatic) were enrolled., Results: Mean basal peak-systolic velocity was 251.41±91.85 cm/s with angiographic diameter stenosis 89.7±8.46%. About 34.4% lesions were severely calcified, 6.8% were angulated, and 4.4% showed significant access tortuosity. Access was femoral, with 100% protection device (filter) use. Two hundred and three lesions in 203 patients were treated (1 cross-over to surgery for lack of effective access, no cross-over to other devices); in most cases (66.9%) the stent was placed directly. For pre-dilated lesions, mean balloon diameter was 3.36±0.34mm. Mean nominal stent diameter was 7.64±0.5 mm; length was 37.19±4.5 mm. All stents were post-dilated (balloon diameter 5.2±0.25 mm). Residual stenosis was <30% in all (3.77±6.91%). By discharge, there were 2 minor strokes (0.9%) and one transient ischemic attack. By 30-days, one other minor stroke occurred in relation to de-novo atrial fibrillation. With no deaths or myocardial infarctions, 30-day total death/stroke/myocardial infarction rate was 1.48%. No in-stent thrombosis or patency loss occurred by 30-days. In-stent peak-systolic velocity was 55.49±22.73 cm/s., Conclusions: Thirty-day results from POLGUARD study indicate safety and a low complication rate of the MicroNet-covered carotid stent use in every-day vascular surgery practice of carotid revascularization. Long-term observation is underway.
- Published
- 2023
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36. Genetic Interactions in Various Environmental Conditions in Caenorhabditis elegans .
- Author
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Toch K, Buczek M, and Labocha MK
- Subjects
- Animals, Caenorhabditis elegans genetics, Epistasis, Genetic
- Abstract
Although it is well known that epistasis plays an important role in many evolutionary processes (e.g., speciation, evolution of sex), our knowledge on the frequency and prevalent sign of epistatic interactions is mainly limited to unicellular organisms or cell cultures of multicellular organisms. This is even more pronounced in regard to how the environment can influence genetic interactions. To broaden our knowledge in that respect we studied gene-gene interactions in a whole multicellular organism, Caenorhabditis elegans . We screened over one thousand gene interactions, each one in standard laboratory conditions, and under three different stressors: heat shock, oxidative stress, and genotoxic stress. Depending on the condition, between 7% and 22% of gene pairs showed significant genetic interactions and an overall sign of epistasis changed depending on the condition. Sign epistasis was quite common, but reciprocal sign epistasis was extremally rare. One interaction was common to all conditions, whereas 78% of interactions were specific to only one environment. Although epistatic interactions are quite common, their impact on evolutionary processes will strongly depend on environmental factors.
- Published
- 2023
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37. FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples.
- Author
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Iwaszkiewicz-Eggebrecht E, Łukasik P, Buczek M, Deng J, Hartop EA, Havnås H, Prus-Frankowska M, Ugarph CR, Viteri P, Andersson AF, Roslin T, Tack AJM, Ronquist F, and Miraldo A
- Subjects
- Animals, DNA Barcoding, Taxonomic methods, Insecta genetics, Ethanol, DNA genetics, Ecosystem, Biodiversity
- Abstract
Insects are diverse and sustain essential ecosystem functions, yet remain understudied. Recent reports about declines in insect abundance and diversity have highlighted a pressing need for comprehensive large-scale monitoring. Metabarcoding (high-throughput bulk sequencing of marker gene amplicons) offers a cost-effective and relatively fast method for characterizing insect community samples. However, the methodology applied varies greatly among studies, thus complicating the design of large-scale and repeatable monitoring schemes. Here we describe a non-destructive metabarcoding protocol that is optimized for high-throughput processing of Malaise trap samples and other bulk insect samples. The protocol details the process from obtaining bulk samples up to submitting libraries for sequencing. It is divided into four sections: 1) Laboratory workspace preparation; 2) Sample processing-decanting ethanol, measuring the wet-weight biomass and the concentration of the preservative ethanol, performing non-destructive lysis and preserving the insect material for future work; 3) DNA extraction and purification; and 4) Library preparation and sequencing. The protocol relies on readily available reagents and materials. For steps that require expensive infrastructure, such as the DNA purification robots, we suggest alternative low-cost solutions. The use of this protocol yields a comprehensive assessment of the number of species present in a given sample, their relative read abundances and the overall insect biomass. To date, we have successfully applied the protocol to more than 7000 Malaise trap samples obtained from Sweden and Madagascar. We demonstrate the data yield from the protocol using a small subset of these samples., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Iwaszkiewicz-Eggebrecht et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
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38. Optimizing insect metabarcoding using replicated mock communities.
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Iwaszkiewicz-Eggebrecht E, Granqvist E, Buczek M, Prus M, Kudlicka J, Roslin T, Tack AJM, Andersson AF, Miraldo A, Ronquist F, and Łukasik P
- Abstract
1: Metabarcoding (high-throughput sequencing of marker gene amplicons) has emerged as a promising and cost-effective method for characterizing insect community samples. Yet, the methodology varies greatly among studies and its performance has not been systematically evaluated to date. In particular, it is unclear how accurately metabarcoding can resolve species communities in terms of presence-absence, abundances, and biomass. 2: Here we use mock community experiments and a simple probabilistic model to evaluate the effect of different DNA extraction protocols on metabarcoding performance. Specifically, we ask four questions: (Q1) How consistent are the recovered community profiles across replicate mock communities?; (Q2) How does the choice of lysis buffer affect the recovery of the original community?; (Q3) How are community estimates affected by differing lysis times and homogenization?; and (Q4) Is it possible to obtain adequate species abundance estimates through the use of biological spike-ins? 3: We show that estimates are quite variable across community replicates. In general, a mild lysis protocol is better at reconstructing species lists and approximate counts, while homogenization is better at retrieving biomass composition. Small insects are more likely to be detected in lysates, while some tough species require homogenization to be detected. Results are less consistent across biological replicates for lysates than for homogenates. Some species are associated with strong PCR amplification bias, which complicates the reconstruction of species counts. Yet, with adequate spike-in data, species abundance can be determined with roughly 40% standard error for homogenates, and with roughly 50% standard error for lysates, under ideal conditions. In the latter case, however, this often requires species-specific reference data, while spike-in data generalizes better across species for homogenates. 4: We conclude that a non-destructive, mild lysis approach shows the highest promise for presence/absence description of the community, while also allowing future morphological or molecular work on the material. However, homogenization protocols perform better for characterizing community composition, in particular in terms of biomass., Competing Interests: Conflict of Interest statement All authors declare that they have no conflicts of interest.
- Published
- 2023
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39. Trends in Cannabis Involvement and Risk of Alcohol Involvement in Motor Vehicle Crash Fatalities in the United States, 2000‒2018.
- Author
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Lira MC, Heeren TC, Buczek M, Blanchette JG, Smart R, Pacula RL, and Naimi TS
- Subjects
- Cross-Sectional Studies, Female, Humans, Male, Risk Factors, United States, Accidents, Traffic mortality, Blood Alcohol Content, Cannabis, Driving Under the Influence statistics & numerical data
- Abstract
Objectives. To assess cannabis and alcohol involvement among motor vehicle crash (MVC) fatalities in the United States. Methods. In this repeated cross-sectional analysis, we used data from the Fatality Analysis Reporting System from 2000 to 2018. Fatalities were cannabis-involved if an involved driver tested positive for a cannabinoid and alcohol-involved based on the highest blood alcohol concentration (BAC) of an involved driver. Multinomial mixed-effects logistic regression models assessed cannabis as a risk factor for alcohol by BAC level. Results. While trends in fatalities involving alcohol have remained stable, the percentage of fatalities involving cannabis and cannabis and alcohol increased from 9.0% in 2000 to 21.5% in 2018, and 4.8% in 2000 to 10.3% in 2018, respectively. In adjusted analyses, fatalities involving cannabis had 1.56 (95% confidence interval [CI] = 1.48, 1.65), 1.62 (95% CI = 1.52, 1.72), and 1.46 (95% CI = 1.42, 1.50) times the odds of involving BACs of 0.01% to 0.049%, 0.05% to 0.079%, and 0.08% or higher, respectively. Conclusions. The percentage of fatalities involving cannabis and coinvolving cannabis and alcohol doubled from 2000 to 2018, and cannabis was associated with alcohol coinvolvement. Further research is warranted to understand cannabis- and alcohol-involved MVC fatalities. ( Am J Public Health . 2021;111(11):1976-1985. https://doi.org/10.2105/AJPH.2021.306466).
- Published
- 2021
- Full Text
- View/download PDF
40. The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies.
- Author
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Marquina D, Buczek M, Ronquist F, and Łukasik P
- Abstract
Traditionally, insects collected for scientific purposes have been dried and pinned, or preserved in 70% ethanol. Both methods preserve taxonomically informative exoskeletal structures well but are suboptimal for preserving DNA for molecular biology. Highly concentrated ethanol (95-100%), preferred as a DNA preservative, has generally been assumed to make specimens brittle and prone to breaking. However, systematic studies on the correlation between ethanol concentration and specimen preservation are lacking. Here, we tested how preservative ethanol concentration in combination with different sample handling regimes affect the integrity of seven insect species representing four orders, and differing substantially in the level of sclerotization. After preservation and treatments (various levels of disturbance), we counted the number of appendages (legs, wings, antennae, or heads) that each specimen had lost. Additionally, we assessed the preservation of DNA after long-term storage by comparing the ratio of PCR amplicon copy numbers to an added artificial standard. We found that high ethanol concentrations indeed induce brittleness in insects. However, the magnitude and nature of the effect varied strikingly among species. In general, ethanol concentrations at or above 90% made the insects more brittle, but for species with robust, thicker exoskeletons, this did not translate to an increased loss of appendages. Neither freezing the samples nor drying the insects after immersion in ethanol had a negative effect on the retention of appendages. However, the morphology of the insects was severely damaged if they were allowed to dry. We also found that DNA preserves less well at lower ethanol concentrations when stored at room temperature for an extended period. However, the magnitude of the effect varies among species; the concentrations at which the number of COI amplicon copies relative to the standard was significantly decreased compared to 95% ethanol ranged from 90% to as low as 50%. While higher ethanol concentrations positively affect long-term DNA preservation, there is a clear trade-off between preserving insects for morphological examination and genetic analysis. The optimal ethanol concentration for the latter is detrimental for the former, and vice versa. These trade-offs need to be considered in large insect biodiversity surveys and other projects aiming to combine molecular work with traditional morphology-based characterization of collected specimens., Competing Interests: The authors declare there are no competing interests., (©2021 Marquina et al.)
- Published
- 2021
- Full Text
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41. Prostaglandin E 2 decrease in induced sputum of hypersensitive asthmatics during oral challenge with aspirin.
- Author
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Mastalerz L, Tyrak KE, Ignacak M, Konduracka E, Mejza F, Ćmiel A, Buczek M, Kot A, Oleś K, and Sanak M
- Subjects
- Adult, Anti-Inflammatory Agents, Non-Steroidal administration & dosage, Aspirin administration & dosage, Aspirin adverse effects, Asthma diagnosis, Asthma, Aspirin-Induced urine, Biomarkers, Disease Susceptibility, Female, Humans, Leukotriene E4 urine, Male, Middle Aged, Phenotype, Respiratory Function Tests, Anti-Inflammatory Agents, Non-Steroidal adverse effects, Aspirin metabolism, Asthma etiology, Asthma metabolism, Asthma, Aspirin-Induced diagnosis, Asthma, Aspirin-Induced metabolism, Dinoprostone metabolism, Sputum metabolism
- Abstract
Background: A special regulatory role for prostaglandin E
2 (PGE2 ) has been postulated in nonsteroidal anti-inflammatory drug (NSAID)-exacerbated respiratory disease (NERD)., Objective: To investigate the effect of systemic aspirin (acetylsalicylic acid) administration on airway PGE2 biosynthesis in induced sputum supernatant (ISS) among subjects with NERD or aspirin-tolerant asthma with chronic rhinosinusitis with nasal polyposis (ATA-CRSwNP), as well as healthy controls (HC)., Methods: Induced sputum (IS) was collected from patients with NERD (n = 26), ATA-CRSwNP (n = 17), and HC (n = 21) at baseline and after aspirin challenge. Sputum differential cell count and IS supernatant (ISS) levels of prostanoids, PGE2 , 8-iso-PGE2 , tetranor-PGE-M, 8-iso-PGF2 α, and leukotriene C4 , D4 , and E4 , were determined using mass spectrometry. Urinary excretion of LTE4 was measured by ELISA., Results: NERD subjects had elevated sputum eosinophilic count as compared to ATA-CRSwNP and HC (median NERD 9.1%, ATA-CRSwNP 2.1%, and HC 0.4%; P < 0.01). Baseline ISS levels of PGE2 were higher in asthmatics as compared to HC at baseline (NERD vs HC P = 0.04, ATA-CRSwNP vs HC P < 0.05). Post-challenge ISS levels of PGE2 compared to baseline significantly decreased in NERD and HC (P < 0.01 and P = 0.01), but not in ATA-CRSwNP. In NERD, a similar decrease in PGE2 as in HC resulted from 2.8 times lower dose of aspirin., Conclusion: Aspirin-precipitated bronchoconstriction is associated with a decrease in airway PGE2 biosynthesis. These results support the mechanism of PGE2 biosynthesis inhibition as a trigger for bronchoconstriction in NERD., (© 2018 EAACI and John Wiley and Sons A/S. Published by John Wiley and Sons Ltd.)- Published
- 2019
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42. Transfer and Mass Balance of Ellagitannins, Anthocyanins, Flavan-3-ols, and Flavonols during the Processing of Red Raspberries (Rubus idaeus L.) to Juice.
- Author
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Sójka M, Macierzyński J, Zaweracz W, and Buczek M
- Subjects
- Food Handling, Anthocyanins chemistry, Flavonoids chemistry, Flavonols chemistry, Fruit and Vegetable Juices analysis, Hydrolyzable Tannins chemistry, Rubus chemistry
- Abstract
The putative health benefits of raspberries and raspberry-based products are potentially attributable to the presence of polyphenolic compounds, such as ellagitannins, anthocyanins, flavanols, and flavonols. Their content in the products of raspberry processing into juice may be affected by the fruit cultivar, technological process parameters, and the properties of the polyphenolics themselves. The objective of the study was to investigate the composition and quantity of the above polyphenolics in raspberries and the products of their processing (that is, juice and press cake, including its seed and seedless fractions). The study also examined the relationship between the molecular mass of ellagitannins and their transfer to juice. The average percentage contributions of ellagitannins, anthocyanins, flavanols, and flavonols to total polyphenolics in the fruits were 64.2%, 17.1%, 16.9%, and 1.8%, respectively. Analysis of raspberry products showed that the dominant compounds in juice were anthocyanins, with 65.1% contribution to total polyphenolics, while in raspberry press cake, they were tannins (98.0%, mainly ellagitannin including lambertianin C and sanguiin H-6). As shown by our mass-balance calculations, on average, 68.1% of ellagitannins and 87.7% of flavanols were retained in press cake, especially in its seedless fraction. In addition, a significant negative correlation was found between the molecular mass of ellagitannins and their transfer to juice. An increase in molecular mass from 1568 to 2805 Da resulted in a more than 10-fold decrease in ellagitannin transfer.
- Published
- 2016
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43. Clinical and biochemical factors for response to aspirin desensitization in aspirin-induced asthma patients – pilot study.
- Author
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Tyrak KE, Mejza F, Buczek M, Cholewa A, Wolny A, Pędzik I, Ignacak M, Konduracka E, Kupryś-Lipińska I, Majda A, Oleś K, Sładek K, Kuna P, and Mastalerz L
- Subjects
- Adult, Aged, Aspirin immunology, Asthma, Aspirin-Induced immunology, Asthma, Aspirin-Induced pathology, Cell Count, Eosinophils, Female, Humans, Macrophages, Male, Middle Aged, Nasal Lavage Fluid immunology, Pilot Projects, Quality of Life, Sputum immunology, Treatment Outcome, Asthma, Aspirin-Induced therapy, Desensitization, Immunologic, Nasal Lavage Fluid cytology, Sputum cytology
- Abstract
Aspirin desensitization is considered to be an effective and well-tolerated therapy for patients with Non-steroidal anti-inflammatory(NSAIDs)-Exacerbated Respiratory Disease (NERD). The aim of the present study was to investigate the influence of aspirin desensitization on inflammatory cell count in induced sputum and nasal lavage in fifteen NERD individuals subjected to one-year aspirin therapy. The decrease in induced sputum count of eosinophils and macrophages was observed. Clinical efficacy of aspirin therapy in improving nasal symptoms and quality of life in NERD patients was also confirmed.
- Published
- 2016
44. Determining length of breastfeeding exclusivity: validity of maternal report 2 years after birth.
- Author
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Burnham L, Buczek M, Braun N, Feldman-Winter L, Chen N, and Merewood A
- Subjects
- Female, Humans, Retrospective Studies, Breast Feeding methods, Feeding Methods, Reproducibility of Results, Time Factors
- Abstract
Background: Infant feeding data are often collected retrospectively through maternal report. Validation studies show that maternal report of initiation and duration of any breastfeeding is accurate but that report of duration of exclusive breastfeeding may be less accurate., Objective: This study aimed to compare infant feeding data collected longitudinally throughout the first 6 months of life with maternal report of duration of exclusive breastfeeding collected 2 years postpartum., Methods: Infant feeding data were collected prospectively throughout the first 6 months of life from medical records and maternal report, including maternal 24-hour recall. At 2 years postpartum, we asked mothers of these same infants how long they exclusively breastfed their infants. Their responses were compared to the prospectively collected data. Simple and multiple linear regressions tested for any significant predictors of the difference between the prospectively collected data and maternal report at 2 years., Results: Of the 292 mothers included in the final analysis, only 88 (30.1%) mothers reported a duration of exclusive breastfeeding at 2 years postpartum that matched the prospectively collected data. Sixty-four women reported exclusively breastfeeding for the recommended 6 months (21.9%), but according to the prospectively collected data, only 2 women (0.7%) breastfed exclusively through 6 months. The median difference between the prospectively collected data and maternal report at 2 years was 1 month (IQR, 0-4)., Conclusion: In this sample of mothers, report of exclusive breastfeeding practices 2 years after birth was often inaccurate and mothers tended to overestimate duration.
- Published
- 2014
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45. Resistance to tyrosine kinase inhibitors in clear cell renal cell carcinoma: from the patient's bed to molecular mechanisms.
- Author
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Buczek M, Escudier B, Bartnik E, Szczylik C, and Czarnecka A
- Subjects
- Animals, Apoptosis drug effects, Drug Resistance, Neoplasm, Humans, Vascular Endothelial Growth Factor A antagonists & inhibitors, Carcinoma, Renal Cell drug therapy, Kidney Neoplasms drug therapy, Protein Kinase Inhibitors therapeutic use, Protein-Tyrosine Kinases antagonists & inhibitors
- Abstract
The introduction of anti-angiogenic drugs especially tyrosine kinase inhibitors (TKIs) was a breakthrough in the treatment of renal cell carcinoma (RCC). Although TKIs have significantly improved outcome in patients with metastatic disease, the majority still develop resistance over time. Because different combinations and sequences of TKIs are tested in clinical trials, resistance patterns and mechanisms underlying this phenomenon should be thoroughly investigated. From a clinical point of view, resistance occurs either as a primary phenomenon (intrinsic) or as a secondary phenomenon related to various escape/evasive mechanisms that the tumor develops in response to vascular endothelial growth factor (VEGF) inhibition. Intrinsic resistance is less common, and related to the primary redundancy of available angiogenic signals from the tumor, causing unresponsiveness to VEGF-targeted therapies. Acquired resistance in tumors is associated with activation of an angiogenic switch which leads to either upregulation of the existing VEGF pathway or recruitment of alternative factors responsible for tumor revascularization. Multiple mechanisms can be involved in different tumor settings that contribute both to evasive and intrinsic resistance, and current endeavor aims to identify these processes and assess their importance in clinical settings and design of pharmacological strategies that lead to enduring anti-angiogenic therapies., (© 2013. Published by Elsevier B.V. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
46. Introducing solid foods: validity of report among mothers who do not adhere to recommended US guidelines.
- Author
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Coit J, Grossman X, Buczek M, Feldman-Winter L, and Merewood A
- Subjects
- Adolescent, Adult, Breast Feeding, Cohort Studies, Female, Humans, Infant, Infant Care standards, Infant Care statistics & numerical data, Male, Nutrition Policy, Prospective Studies, United States, Young Adult, Diet Surveys, Feeding Behavior, Infant Care methods
- Abstract
Background: Introducing solids foods to infants before 6 months has been associated with adverse long-term health outcomes. Studies and surveys frequently use maternal report to identify the age when infants start solid foods., Objective: To address the accuracy of maternal report at 1 year postpartum regarding introduction of solid foods., Methods: Between 2008 and 2009, the authors enrolled mothers of healthy term singletons at an urban Boston hospital within 72 hours of giving birth. We called mothers monthly for 6 months and asked if they had given their baby solid foods in the previous month. At 1 year, we contacted mothers again and asked when they first gave solid foods; answers at 1 year were compared with the data collected monthly., Results: The authors analyzed data on 157 women, all of whom had, according to monthly responses, started solid foods before 6 months. At 1 year, only 14% (22/157) of reports matched data recorded monthly. Although 100% of women introduced solids before 6 months, at 1 year, 41.4% reported starting solids at 6 months., Conclusions: Among women who started feeding solids before 6 months, most did not give an accurate response at 1 year. Most said they started giving solids later than they did. Maternal report may not be the best way to collect such data, and health outcomes based on such data may be biased toward the null.
- Published
- 2012
- Full Text
- View/download PDF
47. [Embolization as a treatment of renal arteriovenous fistula following partial nephrectomy].
- Author
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Buczek M, Brzegowy P, and Urbanik A
- Subjects
- Aged, 80 and over, Arteriovenous Fistula etiology, Humans, Male, Arteriovenous Fistula therapy, Embolization, Therapeutic methods, Endovascular Procedures, Nephrectomy adverse effects, Renal Artery abnormalities, Renal Veins abnormalities
- Abstract
Arteriovenous fistulas (AVF) of the kidney are rare. They may be acquired, idiopathic or arise of congenital arteriovenous malformation. Acquired renal AVF is mostly iatrogenic. We report a case of renal AVF following a partial nephrectomy, which was treated by endovascular coiling.
- Published
- 2012
48. [Pseudoaneurysma as iatrogenic complication of renal biopsy: management by transcatheter embolization].
- Author
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Buczek M, Popiela TJ, and Urbanik A
- Subjects
- Adult, Embolization, Therapeutic, Hematuria etiology, Hemorrhage etiology, Humans, Iatrogenic Disease, Male, Wounds, Penetrating etiology, Young Adult, Aneurysm, False etiology, Aneurysm, False therapy, Biopsy adverse effects, Hemorrhage therapy, Kidney pathology, Renal Artery injuries, Wounds, Penetrating therapy
- Abstract
Renal arterial hemorrhage following percutaneous procedures is a rare but severe complication. Hyper-selective renal artery embolization is the first-choice treatment option. We present a case of massive hematuria due to renal pseudoaneurysm developing after biopsy that was managed with transcatheter embolization with coils.
- Published
- 2012
49. Characteristics of computed tomography imaging of gastrointestinal stromal tumor (GIST) and related diagnostic problems.
- Author
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Werewka-Maczuga A, Osiński T, Chrzan R, Buczek M, and Urbanik A
- Abstract
In this article, authors presented several characteristic features of Gastrointestinal Stromal Tumors (GISTs), which may lead to diagnostic errors and unexpected difficulties during interpretation of CT images. In case of GIST, one may encounter problems at every level of diagnostics and treatment response monitoring, especially after introduction of modern molecular targeting therapies. RECIST scale criteria, used until now for evaluation of response to treatment in solid tumors are based merely on the size of the tumor and turned out to be inadequate after introduction of treatment with new molecular target drugs such as Imatinib.
- Published
- 2011
50. Herpes zoster with motor involvement: discordance between the distribution of skin rash and localization of peripheral nervous system dysfunction.
- Author
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Alshekhlee A, Tay E, Buczek M, Shakir ZA, and Katirji B
- Subjects
- Aged, Electrophysiology, Exanthema physiopathology, Exanthema virology, Female, Herpes Zoster complications, Humans, Male, Middle Aged, Muscle Weakness virology, Peripheral Nervous System Diseases virology, Herpes Zoster physiopathology, Muscle Weakness physiopathology, Peripheral Nervous System Diseases physiopathology
- Abstract
Herpes zoster viral infection (shingles) frequently appears in the thoracic dermatomes with no detectable weakness. We describe three patients who exhibited classic symptoms of herpes zoster infection of the upper limb with various neuropathic findings, including multiple mononeuropathies, radiculopathy, and brachial plexopathy. The distribution of weakness and electrodiagnostic findings was not limited to the involved dermatomes. Furthermore, the electrodiagnostic studies in one patient show evidence of acquired demyelination; hence, the infectious process may include the axon and/or the myelin sheath of the peripheral nerves. In the upper limb, we suggest that a mismatch between the distribution of the vesicular herpetic rash and weakness, as corroborated by the clinical examination and the electrodiagnostic studies, may occur.
- Published
- 2011
- Full Text
- View/download PDF
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