1. Repurposed drugs and nutraceuticals targeting envelope protein: A possible therapeutic strategy against COVID-19
- Author
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Angshuman Bagchi, Nilkanta Chowdhury, Troyee Das, Durbadal Chatterjee, Zhumur Ghosh, and Gourab Das
- Subjects
Models, Molecular ,0106 biological sciences ,Drug repurposing ,Drug Evaluation, Preclinical ,Drug designing ,01 natural sciences ,Pattern Recognition, Automated ,Machine Learning ,User-Computer Interface ,DAG, Diacylglycerol ,IP3, Inositol Tri Phosphate ,IL, Interleukin ,PG, Prostaglandin ,Integral membrane protein ,Conserved Sequence ,PLC, PhospholipaseC ,E protein ,chemistry.chemical_classification ,LCAT, Lecithin–cholesterol acyltransferase ,0303 health sciences ,CETP, Cholesteryl ester transfer protein ,B, Predicted mode of action of the repurposed FDA approved pharmaceuticals and nutraceuticals against E-protein to combat SARS-CoV-2 mediated disease symptoms ,Molecular docking simulations ,ARDS, Acute Respiratory Distress Syndrome ,Amino acid ,Molecular Docking Simulation ,Drug repositioning ,HDL, high Density Lipoprotein ,PK, Protein Kinase ,Original Article ,Nutraceuticals ,Target protein ,Coronavirus disease 2019 (COVID-19) ,Computational biology ,COX, Cyclooxygenase ,Biology ,Antiviral Agents ,PPAR, Peroxisome proliferator-activated receptor ,Virus ,Coronavirus Envelope Proteins ,03 medical and health sciences ,Nutraceutical ,PIP2, Phosphatidylinositol4,5-bisphosphate ,Artificial Intelligence ,Pattern recognition ,ATP, Adenosine Tri Phosphate ,Genetics ,Humans ,Pandemics ,AC, Acetyl Cyclase ,030304 developmental biology ,CAP, Community acquired Pneumonia ,SARS-CoV-2 ,SARS-CoV-2 infection ,Drug Repositioning ,LDL, Low Density Lipoprtein ,COVID-19 ,TNF, Tumor necrosis Factor ,MLCK, Myosin Light Chain Kinase ,COVID-19 Drug Treatment ,AT1R, Angiotensin1 Receptor ,ABCA1, ATP-binding cassette transporter 1 ,chemistry ,Dietary Supplements ,biology.protein ,Protein A ,AI based screening ,Ang, Angiotensin ,ROS, Reactive Oxygen Species ,010606 plant biology & botany - Abstract
COVID-19 pandemic caused by SARS-CoV-2 has already claimed millions of lives worldwide due to the absence of a suitable anti-viral therapy. The CoV envelope (E) protein, which has not received much attention so far, is a 75 amino acid long integral membrane protein involved in assembly and release of the virus inside the host. Here we have used artificial intelligence (AI) and pattern recognition techniques for initial screening of FDA approved pharmaceuticals and nutraceuticals to target this E protein. Subsequently, molecular docking simulations have been performed between the ligands and target protein to screen a set of 9 ligand molecules. Finally, we have provided detailed insight into their mechanisms of action related to the varied symptoms of infected patients., Highlights • This work focuses on integral membrane Envelope (E) Protein as the target which is the most conserved among all. • We implemented artificial intelligence (AI) and pattern recognition techniques for initial screening • Next level screening incorporates their (a) existing functions (b) FDA approval status and (c) severity of the side effects. • Blind molecular docking simulation has been done and 9 ligand molecules have been screened. • A detailed insight into the mode of action of these 9 drugs related to the varied symptoms of infected patients is provided.
- Published
- 2021
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