18 results on '"Caddy-Retalic, S"'
Search Results
2. Designing environmental research for impact
- Author
-
Campbell, C.A., Lefroy, E.C., Caddy-Retalic, S., Bax, N., Doherty, P.J., Douglas, M.M., Johnson, D., Possingham, H.P., Specht, A., Tarte, D., and West, J.
- Published
- 2015
- Full Text
- View/download PDF
3. Continental risk assessment for understudied taxa post‐catastrophic wildfire indicates severe impacts on the Australian bee fauna
- Author
-
Dorey, J.B., Rebola, C.M., Davies, O.K., Prendergast, K.S., Parslow, B.A., Hogendoorn, K., Leijs, R., Hearn, L.R., Leitch, E.J., O’Reilly, R.L., Marsh, J., Woinarski, J.C.Z., Caddy‐Retalic, S., Dorey, J.B., Rebola, C.M., Davies, O.K., Prendergast, K.S., Parslow, B.A., Hogendoorn, K., Leijs, R., Hearn, L.R., Leitch, E.J., O’Reilly, R.L., Marsh, J., Woinarski, J.C.Z., and Caddy‐Retalic, S.
- Abstract
The 2019–2020 Australian Black Summer wildfires demonstrated that single events can have widespread and catastrophic impacts on biodiversity, causing a sudden and marked reduction in population size for many species. In such circumstances, there is a need for conservation managers to respond rapidly to implement priority remedial management actions for the most-affected species to help prevent extinctions. To date, priority responses have been biased towards high-profile taxa with substantial information bases. Here, we demonstrate that sufficient data are available to model the extinction risk for many less well-known species, which could inform much broader and more effective ecological disaster responses. Using publicly available collection and GIS datasets, combined with life-history data, we modelled the extinction risk from the 2019–2020 catastrophic Australian wildfires for 553 Australian native bee species (33% of all described Australian bee taxa). We suggest that two species are now eligible for listing as Endangered and nine are eligible for listing as Vulnerable under IUCN criteria, on the basis of fire overlap, intensity, frequency, and life-history traits: this tally far exceeds the three Australian bee species listed as threatened prior to the wildfire. We demonstrate how to undertake a wide-scale assessment of wildfire impact on a poorly understood group to help to focus surveys and recovery efforts. We also provide the methods and the script required to make similar assessments for other taxa or in other regions.
- Published
- 2021
4. Continental risk assessment for understudied taxa post-catastrophic wildfire indicates severe impacts on the Australian bee fauna
- Author
-
Dorey, JB, Rebola, CM, Davies, OK, Prendergast, KS, Parslow, BA, Hogendoorn, K, Leijs, R, Hearn, LR, Leitch, EJ, O'Reilly, RL, Marsh, J, Woinarski, JCZ, Caddy-Retalic, S, Dorey, JB, Rebola, CM, Davies, OK, Prendergast, KS, Parslow, BA, Hogendoorn, K, Leijs, R, Hearn, LR, Leitch, EJ, O'Reilly, RL, Marsh, J, Woinarski, JCZ, and Caddy-Retalic, S
- Abstract
The 2019-2020 Australian Black Summer wildfires demonstrated that single events can have widespread and catastrophic impacts on biodiversity, causing a sudden and marked reduction in population size for many species. In such circumstances, there is a need for conservation managers to respond rapidly to implement priority remedial management actions for the most-affected species to help prevent extinctions. To date, priority responses have been biased towards high-profile taxa with substantial information bases. Here, we demonstrate that sufficient data are available to model the extinction risk for many less well-known species, which could inform much broader and more effective ecological disaster responses. Using publicly available collection and GIS datasets, combined with life-history data, we modelled the extinction risk from the 2019-2020 catastrophic Australian wildfires for 553 Australian native bee species (33% of all described Australian bee taxa). We suggest that two species are now eligible for listing as Endangered and nine are eligible for listing as Vulnerable under IUCN criteria, on the basis of fire overlap, intensity, frequency, and life-history traits: this tally far exceeds the three Australian bee species listed as threatened prior to the wildfire. We demonstrate how to undertake a wide-scale assessment of wildfire impact on a poorly understood group to help to focus surveys and recovery efforts. We also provide the methods and the script required to make similar assessments for other taxa or in other regions.
- Published
- 2021
5. Vegetation change along a Mediterranean to arid zone bioclimatic gradient reveals scale-dependent ecotone patterning
- Author
-
Caddy-Retalic, S., primary, Wardle, G. M., additional, Leitch, E. J., additional, McInerney, F. A., additional, and Lowe, A. J., additional
- Published
- 2020
- Full Text
- View/download PDF
6. Advancing DNA barcoding and metabarcoding applications for plants requires systematic analysis of herbarium collections-an Australian perspective
- Author
-
Dormontt, E., van Dijk, K., Bell, K., Biffin, E., Breed, M., Byrne, M., Caddy-Retalic, S., Encinas-Viso, F., Nevill, Paul, Shapcott, A., Young, J., Waycott, M., Lowe, A., Dormontt, E., van Dijk, K., Bell, K., Biffin, E., Breed, M., Byrne, M., Caddy-Retalic, S., Encinas-Viso, F., Nevill, Paul, Shapcott, A., Young, J., Waycott, M., and Lowe, A.
- Abstract
Building DNA barcode databases for plants has historically been ad hoc, and often with a relatively narrow taxonomic focus. To realize the full potential of DNA barcoding for plants, and particularly its application to metabarcoding for mixed-species environmental samples, systematic sequencing of reference collections is required using an augmented set of DNA barcode loci, applied according to agreed data generation and analysis standards. The largest and most complete reference collections of plants are held in herbaria. Australia has a globally significant flora that is well sampled and expertly curated by its herbaria, coordinated through the Council of Heads of Australasian Herbaria. There exists a tremendous opportunity to provide a comprehensive and taxonomically robust reference database for plant DNA barcoding applications by undertaking coordinated and systematic sequencing of the entire flora of Australia utilizing existing herbarium material. In this paper, we review the development of DNA barcoding and metabarcoding and consider the requirements for a robust and comprehensive system. We analyzed the current availability of DNA barcode reference data for Australian plants, recommend priority taxa for database inclusion, and highlight future applications of a comprehensive metabarcoding system. We urge that large-scale and coordinated analysis of herbarium collections be undertaken to realize the promise of DNA barcoding and metabarcoding, and propose that the generation and curation of reference data should become a national investment priority.
- Published
- 2018
7. Bioclimatic transect networks: Powerful observatories of ecological change
- Author
-
Caddy-Retalic, S, Andersen, AN, Aspinwall, MJ, Breed, MF, Byrne, M, Christmas, MJ, Dong, N, Evans, BJ, Fordham, DA, Guerin, GR, Hoffmann, AA, Hughes, AC, van Leeuwen, SJ, McInerney, FA, Prober, SM, Rossetto, M, Rymer, PD, Steane, DA, Wardle, GM, Lowe, AJ, Caddy-Retalic, S, Andersen, AN, Aspinwall, MJ, Breed, MF, Byrne, M, Christmas, MJ, Dong, N, Evans, BJ, Fordham, DA, Guerin, GR, Hoffmann, AA, Hughes, AC, van Leeuwen, SJ, McInerney, FA, Prober, SM, Rossetto, M, Rymer, PD, Steane, DA, Wardle, GM, and Lowe, AJ
- Abstract
Transects that traverse substantial climate gradients are important tools for climate change research and allow questions on the extent to which phenotypic variation associates with climate, the link between climate and species distributions, and variation in sensitivity to climate change among biomes to be addressed. However, the potential limitations of individual transect studies have recently been highlighted. Here, we argue that replicating and networking transects, along with the introduction of experimental treatments, addresses these concerns. Transect networks provide cost-effective and robust insights into ecological and evolutionary adaptation and improve forecasting of ecosystem change. We draw on the experience and research facilitated by the Australian Transect Network to demonstrate our case, with examples, to clarify how population- and community-level studies can be integrated with observations from multiple transects, manipulative experiments, genomics, and ecological modeling to gain novel insights into how species and systems respond to climate change. This integration can provide a spatiotemporal understanding of past and future climate-induced changes, which will inform effective management actions for promoting biodiversity resilience.
- Published
- 2017
8. Introducing BASE: the Biomes of Australian soil environments soil microbial diversity database
- Author
-
Bissett, A., Fitzgerald, A., Meintjes, T., Mele, P.M., Reith, F., Dennis, P.G., Breed, M.F., Brown, B., Brown, M.V., Brugger, J., Byrne, M., Caddy-Retalic, S., Carmody, B., Coates, D.J., Correa, C., Ferrari, B.C., Gupta, V.V.S.R., Hamonts, K., Haslem, A., Hugenholtz, P., Karan, M., Koval, J., Lowe, A.J., MacDonald, S., McGrath, L., Martin, D., Morgan, M., North, K.I., Paungfoo-Lonhienne, C., Pendall, E., Phillips, L., Pirzl, R., Powell, J.R., Ragan, M.A., Schmidt, S., Seymour, N., Snape, I., Stephen, J.R., Stevens, M., Tinning, M., Williams, K., Yeoh, Y.K., Zammit, C.M., Young, A., Bissett, A., Fitzgerald, A., Meintjes, T., Mele, P.M., Reith, F., Dennis, P.G., Breed, M.F., Brown, B., Brown, M.V., Brugger, J., Byrne, M., Caddy-Retalic, S., Carmody, B., Coates, D.J., Correa, C., Ferrari, B.C., Gupta, V.V.S.R., Hamonts, K., Haslem, A., Hugenholtz, P., Karan, M., Koval, J., Lowe, A.J., MacDonald, S., McGrath, L., Martin, D., Morgan, M., North, K.I., Paungfoo-Lonhienne, C., Pendall, E., Phillips, L., Pirzl, R., Powell, J.R., Ragan, M.A., Schmidt, S., Seymour, N., Snape, I., Stephen, J.R., Stevens, M., Tinning, M., Williams, K., Yeoh, Y.K., Zammit, C.M., and Young, A.
- Abstract
Background Microbial inhabitants of soils are important to ecosystem and planetary functions, yet there are large gaps in our knowledge of their diversity and ecology. The ‘Biomes of Australian Soil Environments’ (BASE) project has generated a database of microbial diversity with associated metadata across extensive environmental gradients at continental scale. As the characterisation of microbes rapidly expands, the BASE database provides an evolving platform for interrogating and integrating microbial diversity and function. Findings BASE currently provides amplicon sequences and associated contextual data for over 900 sites encompassing all Australian states and territories, a wide variety of bioregions, vegetation and land-use types. Amplicons target bacteria, archaea and general and fungal-specific eukaryotes. The growing database will soon include metagenomics data. Data are provided in both raw sequence (FASTQ) and analysed OTU table formats and are accessed via the project’s data portal, which provides a user-friendly search tool to quickly identify samples of interest. Processed data can be visually interrogated and intersected with other Australian diversity and environmental data using tools developed by the ‘Atlas of Living Australia’. Conclusions Developed within an open data framework, the BASE project is the first Australian soil microbial diversity database. The database will grow and link to other global efforts to explore microbial, plant, animal, and marine biodiversity. Its design and open access nature ensures that BASE will evolve as a valuable tool for documenting an often overlooked component of biodiversity and the many microbe-driven processes that are essential to sustain soil function and ecosystem services.
- Published
- 2016
9. Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
- Author
-
Bissett, A, Fitzgerald, A, Meintjes, T, Mele, PM, Reith, F, Dennis, PG, Breed, MF, Brown, B, Brown, MV, Brugger, J, Byrne, M, Caddy-Retalic, S, Carmody, B, Coates, DJ, Correa, C, Ferrari, BC, Gupta, VVSR, Hamonts, K, Haslem, A, Hugenholtz, P, Karan, M, Koval, J, Lowe, AJ, Macdonald, S, McGrath, L, Martin, D, Morgan, M, North, KI, Paungfoo-Lonhienne, C, Pendall, E, Phillips, L, Pirzl, R, Powell, JR, Ragan, MA, Schmidt, S, Seymour, N, Snape, I, Stephen, JR, Stevens, M, Tinning, M, Williams, K, Yeoh, YK, Zammit, CM, Young, A, Bissett, A, Fitzgerald, A, Meintjes, T, Mele, PM, Reith, F, Dennis, PG, Breed, MF, Brown, B, Brown, MV, Brugger, J, Byrne, M, Caddy-Retalic, S, Carmody, B, Coates, DJ, Correa, C, Ferrari, BC, Gupta, VVSR, Hamonts, K, Haslem, A, Hugenholtz, P, Karan, M, Koval, J, Lowe, AJ, Macdonald, S, McGrath, L, Martin, D, Morgan, M, North, KI, Paungfoo-Lonhienne, C, Pendall, E, Phillips, L, Pirzl, R, Powell, JR, Ragan, MA, Schmidt, S, Seymour, N, Snape, I, Stephen, JR, Stevens, M, Tinning, M, Williams, K, Yeoh, YK, Zammit, CM, and Young, A
- Abstract
BACKGROUND: Microbial inhabitants of soils are important to ecosystem and planetary functions, yet there are large gaps in our knowledge of their diversity and ecology. The 'Biomes of Australian Soil Environments' (BASE) project has generated a database of microbial diversity with associated metadata across extensive environmental gradients at continental scale. As the characterisation of microbes rapidly expands, the BASE database provides an evolving platform for interrogating and integrating microbial diversity and function. FINDINGS: BASE currently provides amplicon sequences and associated contextual data for over 900 sites encompassing all Australian states and territories, a wide variety of bioregions, vegetation and land-use types. Amplicons target bacteria, archaea and general and fungal-specific eukaryotes. The growing database will soon include metagenomics data. Data are provided in both raw sequence (FASTQ) and analysed OTU table formats and are accessed via the project's data portal, which provides a user-friendly search tool to quickly identify samples of interest. Processed data can be visually interrogated and intersected with other Australian diversity and environmental data using tools developed by the 'Atlas of Living Australia'. CONCLUSIONS: Developed within an open data framework, the BASE project is the first Australian soil microbial diversity database. The database will grow and link to other global efforts to explore microbial, plant, animal, and marine biodiversity. Its design and open access nature ensures that BASE will evolve as a valuable tool for documenting an often overlooked component of biodiversity and the many microbe-driven processes that are essential to sustain soil function and ecosystem services.
- Published
- 2016
10. Plant families exhibit unique geographic trends in C4 richness and cover in Australia.
- Author
-
Munroe SEM, McInerney FA, Guerin GR, Andrae JW, Welti N, Caddy-Retalic S, Atkins R, and Sparrow B
- Subjects
- Biodiversity, Climate, Ecosystem, Poaceae physiology, Soil, Chenopodiaceae physiology, Plants
- Abstract
Numerous studies have analysed the relationship between C4 plant cover and climate. However, few have examined how different C4 taxa vary in their response to climate, or how environmental factors alter C4:C3 abundance. Here we investigate (a) how proportional C4 plant cover and richness (relative to C3) responds to changes in climate and local environmental factors, and (b) if this response is consistent among families. Proportional cover and richness of C4 species were determined at 541 one-hectare plots across Australia for 14 families. C4 cover and richness of the most common and abundant families were regressed against climate and local parameters. C4 richness and cover in the monocot families Poaceae and Cyperaceae increased with latitude and were strongly positively correlated with January temperatures, however C4 Cyperaceae occupied a more restricted temperature range. Seasonal rainfall, soil pH, soil texture, and tree cover modified proportional C4 cover in both families. Eudicot families displayed considerable variation in C4 distribution patterns. Proportional C4 Euphorbiaceae richness and cover were negatively correlated with increased moisture availability (i.e. high rainfall and low aridity), indicating they were more common in dry environments. Proportional C4 Chenopodiaceae richness and cover were weakly correlated with climate and local environmental factors, including soil texture. However, the explanatory power of C4 Chenopodiaceae models were poor, suggesting none of the factors considered in this study strongly influenced Chenopodiaceae distribution. Proportional C4 richness and cover in Aizoaceae, Amaranthaceae, and Portulacaceae increased with latitude, suggesting C4 cover and richness in these families increased with temperature and summer rainfall, but sample size was insufficient for regression analysis. Results demonstrate the unique relationships between different C4 taxa and climate, and the significant modifying effects of environmental factors on C4 distribution. Our work also revealed C4 families will not exhibit similar responses to local perturbations or climate., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2022
- Full Text
- View/download PDF
11. Continental risk assessment for understudied taxa post-catastrophic wildfire indicates severe impacts on the Australian bee fauna.
- Author
-
Dorey JB, Rebola CM, Davies OK, Prendergast KS, Parslow BA, Hogendoorn K, Leijs R, Hearn LR, Leitch EJ, O'Reilly RL, Marsh J, Woinarski JCZ, and Caddy-Retalic S
- Subjects
- Animals, Australia, Bees, Biodiversity, Conservation of Natural Resources, Ecosystem, Risk Assessment, Fires, Wildfires
- Abstract
The 2019-2020 Australian Black Summer wildfires demonstrated that single events can have widespread and catastrophic impacts on biodiversity, causing a sudden and marked reduction in population size for many species. In such circumstances, there is a need for conservation managers to respond rapidly to implement priority remedial management actions for the most-affected species to help prevent extinctions. To date, priority responses have been biased towards high-profile taxa with substantial information bases. Here, we demonstrate that sufficient data are available to model the extinction risk for many less well-known species, which could inform much broader and more effective ecological disaster responses. Using publicly available collection and GIS datasets, combined with life-history data, we modelled the extinction risk from the 2019-2020 catastrophic Australian wildfires for 553 Australian native bee species (33% of all described Australian bee taxa). We suggest that two species are now eligible for listing as Endangered and nine are eligible for listing as Vulnerable under IUCN criteria, on the basis of fire overlap, intensity, frequency, and life-history traits: this tally far exceeds the three Australian bee species listed as threatened prior to the wildfire. We demonstrate how to undertake a wide-scale assessment of wildfire impact on a poorly understood group to help to focus surveys and recovery efforts. We also provide the methods and the script required to make similar assessments for other taxa or in other regions., (© 2021 John Wiley & Sons Ltd.)
- Published
- 2021
- Full Text
- View/download PDF
12. The photosynthetic pathways of plant species surveyed in Australia's national terrestrial monitoring network.
- Author
-
Munroe SEM, McInerney FA, Andrae J, Welti N, Guerin GR, Leitch E, Hall T, Szarvas S, Atkins R, Caddy-Retalic S, and Sparrow B
- Subjects
- Atmosphere chemistry, Australia, Carbon Dioxide analysis, Carbon Dioxide metabolism, Climate Change, Ecosystem, Photosynthesis, Plants metabolism
- Abstract
The photosynthetic pathway of plants is a fundamental trait that influences terrestrial environments from the local to global level. The distribution of different photosynthetic pathways in Australia is expected to undergo a substantial shift due to climate change and rising atmospheric CO
2 ; however, tracking change is hindered by a lack of data on the pathways of species, as well as their distribution and relative cover within plant communities. Here we present the photosynthetic pathways for 2428 species recorded across 541 plots surveyed by Australia's Terrestrial Ecosystem Research Network (TERN) between 2011 and 2017. This dataset was created to facilitate research exploring trends in vegetation change across Australia. Species were assigned a photosynthetic pathway using published literature and stable carbon isotope analysis of bulk tissue. The photosynthetic pathway of species can be extracted from the dataset individually, or used in conjunction with vegetation surveys to study the occurrence and abundance of pathways across the continent. This dataset will be updated as TERN's plot network expands and new information becomes available.- Published
- 2021
- Full Text
- View/download PDF
13. Components of leaf-trait variation along environmental gradients.
- Author
-
Dong N, Prentice IC, Wright IJ, Evans BJ, Togashi HF, Caddy-Retalic S, McInerney FA, Sparrow B, Leitch E, and Lowe AJ
- Subjects
- Australia, Phenotype, Soil, Climate, Plant Leaves
- Abstract
Leaf area (LA), mass per area (LMA), nitrogen per unit area (N
area ) and the leaf-internal to ambient CO2 ratio (χ) are fundamental traits for plant functional ecology and vegetation modelling. Here we aimed to assess how their variation, within and between species, tracks environmental gradients. Measurements were made on 705 species from 116 sites within a broad north-south transect from tropical to temperate Australia. Trait responses to environment were quantified using multiple regression; within- and between-species responses were compared using analysis of covariance and trait-gradient analysis. Leaf area, the leaf economics spectrum (indexed by LMA and Narea ) and χ (from stable carbon isotope ratios) varied almost independently among species. Across sites, however, χ and LA increased with mean growing-season temperature (mGDD0 ) and decreased with vapour pressure deficit (mVPD0 ) and soil pH. LMA and Narea showed the reverse pattern. Climate responses agreed with expectations based on optimality principles. Within-species variability contributed < 10% to geographical variation in LA but > 90% for χ, with LMA and Narea intermediate. These findings support the hypothesis that acclimation within individuals, adaptation within species and selection among species combine to create predictable relationships between traits and environment. However, the contribution of acclimation/adaptation vs species selection differs among traits., (© 2020 The Authors. New Phytologist © 2020 New Phytologist Trust.)- Published
- 2020
- Full Text
- View/download PDF
14. Floristic and structural assessment of Australian rangeland vegetation with standardized plot-based surveys.
- Author
-
Baruch Z, Caddy-Retalic S, Guerin GR, Sparrow B, Leitch E, Tokmakoff A, and Lowe AJ
- Subjects
- Analysis of Variance, Australia, Climate, Geography, Grassland, Magnoliopsida classification, Principal Component Analysis, Rain, Seasons, Soil chemistry, Species Specificity, Conservation of Natural Resources methods, Ecosystem, Environment, Magnoliopsida physiology
- Abstract
We describe and correlate environmental, floristic and structural vegetation traits of a large portion of Australian rangelands. We analysed 351 one hectare vegetation plots surveyed by Australia's Terrestrial Ecosystem Research Network (TERN) using the AusPlots Rangelands standardized method. The AusPlots Rangelands method involves surveying 1010 one meter-spaced point-intercepts (IPs) per plot. At each IP, species were scored, categorised by growth-form, converted to percentage cover as the input for the plot x species matrix. Vegetation structure is depicted by growth-form configuration and relative importance. The floristic and structural distance matrices were correlated with the Mantel test. Canonical correspondence analysis (CCA) related floristic composition to environmental variables sourced from WorldClim, the Atlas of Living Australia and TERN's Soil and Landscape Grid. Differences between clusters were tested with ANOVA while principal component analysis (PCA) ordered the plots within the environmental space. Our plot x species matrix required segmentation due to sparsity and high β-diversity. Based on the ordination of plots latitude within environmental space, the matrix was segmented into three "superclusters": the winter rain and temperate Mediterranean, the monsoonal rain savannas and the arid deserts. Further classification, with the UPGMA linkage method, generated two, four and five clusters, respectively. All groupings are described by species richness, diversity indices and growth form conformation. Several floristic disjunctions were apparent and their possible causes are discussed. For all superclusters, the correspondence between the floristic and the structural or growth form matrices was statistically significant. CCA ordination clearly demarcated all groupings. Aridity, rainfall, temperature, seasonality, soil nitrogen and pH are significant correlates to the ordination of superclusters and clusters. At present, our results are influenced by incomplete sampling. As more sites are surveyed, this pioneer analysis will be updated and refined providing tools for the effective management of Australian rangelands., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2018
- Full Text
- View/download PDF
15. Functional acclimation across microgeographic scales in Dodonaea viscosa .
- Author
-
Baruch Z, Jones AR, Hill KE, McInerney FA, Blyth C, Caddy-Retalic S, Christmas MJ, Gellie NJC, Lowe AJ, Martin-Fores I, Nielson KE, and Breed MF
- Abstract
Intraspecific plant functional trait variation provides mechanistic insight into persistence and can infer population adaptive capacity. However, most studies explore intraspecific trait variation in systems where geographic and environmental distances co-vary. Such a design reduces the certainty of trait-environment associations, and it is imperative for studies that make trait-environment associations be conducted in systems where environmental distance varies independently of geographic distance. Here we explored trait variation in such a system, and aimed to: (i) quantify trait variation of parent and offspring generations, and associate this variation to parental environments; (ii) determine the traits which best explain population differences; (iii) compare parent and offspring trait-trait relationships. We characterized 15 plant functional traits in eight populations of a shrub with a maximum separation ca. 100 km. Populations differed markedly in aridity and elevation, and environmental distance varied independently of geographic distance. We measured traits in parent populations collected in the field, as well as their offspring reared in greenhouse conditions. Parent traits regularly associated with their environment. These associations were largely lost in the offspring generation, indicating considerable phenotypic plasticity. An ordination of parent traits showed clear structure with strong influence of leaf area, specific leaf area, stomatal traits, isotope δ
13 C and δ15 N ratios, and Narea , whereas the offspring ordination was less structured. Parent trait-trait correlations were in line with expectations from the leaf economic spectrum. We show considerable trait plasticity in the woody shrub over microgeographic scales (<100 km), indicating it has the adaptive potential within a generation to functionally acclimate to a range of abiotic conditions. Since our study shrub is commonly used for restoration in southern Australia and local populations do not show strong genetic differentiation in functional traits, the potential risks of transferring seed across the broad environmental conditions are not likely to be a significant issue.- Published
- 2018
- Full Text
- View/download PDF
16. Bioclimatic transect networks: Powerful observatories of ecological change.
- Author
-
Caddy-Retalic S, Andersen AN, Aspinwall MJ, Breed MF, Byrne M, Christmas MJ, Dong N, Evans BJ, Fordham DA, Guerin GR, Hoffmann AA, Hughes AC, van Leeuwen SJ, McInerney FA, Prober SM, Rossetto M, Rymer PD, Steane DA, Wardle GM, and Lowe AJ
- Abstract
Transects that traverse substantial climate gradients are important tools for climate change research and allow questions on the extent to which phenotypic variation associates with climate, the link between climate and species distributions, and variation in sensitivity to climate change among biomes to be addressed. However, the potential limitations of individual transect studies have recently been highlighted. Here, we argue that replicating and networking transects, along with the introduction of experimental treatments, addresses these concerns. Transect networks provide cost-effective and robust insights into ecological and evolutionary adaptation and improve forecasting of ecosystem change. We draw on the experience and research facilitated by the Australian Transect Network to demonstrate our case, with examples, to clarify how population- and community-level studies can be integrated with observations from multiple transects, manipulative experiments, genomics, and ecological modeling to gain novel insights into how species and systems respond to climate change. This integration can provide a spatiotemporal understanding of past and future climate-induced changes, which will inform effective management actions for promoting biodiversity resilience.
- Published
- 2017
- Full Text
- View/download PDF
17. Erratum to: Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.
- Author
-
Bissett A, Fitzgerald A, Court L, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J, Byrne M, Caddy-Retalic S, Carmody B, Coates DJ, Correa C, Ferrari BC, Gupta VVSR, Hamonts K, Haslem A, Hugenholtz P, Karan M, Koval J, Lowe AJ, Macdonald S, McGrath L, Martin D, Morgan M, North KI, Paungfoo-Lonhienne C, Pendall E, Phillips L, Pirzl R, Powell JR, Ragan MA, Schmidt S, Seymour N, Snape I, Stephen JR, Stevens M, Tinning M, Williams K, Yeoh YK, Zammit CM, and Young A
- Published
- 2017
- Full Text
- View/download PDF
18. Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.
- Author
-
Bissett A, Fitzgerald A, Court, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J, Byrne M, Caddy-Retalic S, Carmody B, Coates DJ, Correa C, Ferrari BC, Gupta VV, Hamonts K, Haslem A, Hugenholtz P, Karan M, Koval J, Lowe AJ, Macdonald S, McGrath L, Martin D, Morgan M, North KI, Paungfoo-Lonhienne C, Pendall E, Phillips L, Pirzl R, Powell JR, Ragan MA, Schmidt S, Seymour N, Snape I, Stephen JR, Stevens M, Tinning M, Williams K, Yeoh YK, Zammit CM, and Young A
- Subjects
- Archaea classification, Archaea genetics, Australia, Bacteria classification, Bacteria genetics, Biodiversity, Fungi classification, Fungi genetics, Metagenomics, Phylogeny, Databases, Factual, Sequence Analysis, DNA methods, Soil Microbiology
- Abstract
Background: Microbial inhabitants of soils are important to ecosystem and planetary functions, yet there are large gaps in our knowledge of their diversity and ecology. The 'Biomes of Australian Soil Environments' (BASE) project has generated a database of microbial diversity with associated metadata across extensive environmental gradients at continental scale. As the characterisation of microbes rapidly expands, the BASE database provides an evolving platform for interrogating and integrating microbial diversity and function., Findings: BASE currently provides amplicon sequences and associated contextual data for over 900 sites encompassing all Australian states and territories, a wide variety of bioregions, vegetation and land-use types. Amplicons target bacteria, archaea and general and fungal-specific eukaryotes. The growing database will soon include metagenomics data. Data are provided in both raw sequence (FASTQ) and analysed OTU table formats and are accessed via the project's data portal, which provides a user-friendly search tool to quickly identify samples of interest. Processed data can be visually interrogated and intersected with other Australian diversity and environmental data using tools developed by the 'Atlas of Living Australia'., Conclusions: Developed within an open data framework, the BASE project is the first Australian soil microbial diversity database. The database will grow and link to other global efforts to explore microbial, plant, animal, and marine biodiversity. Its design and open access nature ensures that BASE will evolve as a valuable tool for documenting an often overlooked component of biodiversity and the many microbe-driven processes that are essential to sustain soil function and ecosystem services.
- Published
- 2016
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.