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Current methods for determining equilibrium constants often operate in three-dimensional environments, which may not accurately reflect interactions with membrane-bound proteins. With our technique, based on single-molecule localization microscopy (SMLM), we directly determine protein-protein association ( K a ) and dissociation ( K d ) constants in cellular environments by quantifying associated and isolated molecules and their interaction area. We introduce Kernel Surface Density (ks-density,) a novel method for determining the accessible area for interacting molecules, eliminating the need for user-defined parameters. Simulation studies validate our method's accuracy across various density and affinity conditions. Applying this technique to T cell signaling proteins, we determine the 2D association constant of T cell receptors (TCRs) in resting cells and the pseudo-3D dissociation constant of pZAP70 molecules from phosphorylated intracellular tyrosine-based activation motifs on the TCR-CD3 complex. We address challenges of multiple detection and molecular labeling efficiency. This method enhances our understanding of protein interactions in cellular environments, advancing our knowledge of complex biological processes.

In this work, we have explored Re(I) complexes featuring triphenylpnictogen ( PnPh 3 , Pn = P , As , or Sb )-based coligands and bidentate (neutral or monoanionic) luminophores derived from 1,10-phenantroline ( phen ), as well as from 2-(3-( tert -butyl)-1 H -1,2,4-triazol-5-yl)pyridine ( H(N- t Bu) ). The effect of the increasingly heavy elements on the structural parameters, photoexcited-state properties, and electrochemical behavior as well as the hybridization defects and polarization of the Pn atoms was related to the charges of the main luminophores (i.e., phen vs N- t Bu ) and explored in terms of photoluminescence spectroscopy, X-ray diffractometry, and quantum-chemical methods. Therefore, an in-depth analysis of the bonding, crystal packing, excited-state energies, and lifetimes was assessed in liquid solutions, frozen glassy matrices, and crystalline phases along with a semiquantitative photoactivation study. Notably, by changing the main ligand from phen to N- t Bu , an increase in radiative and radiationless deactivation rates ( k r and k nr , respectively) at 77 K together with a faster photoinduced CO release and fragmentation at room temperature was detected. In addition, a progressively red-shifted phosphorescence was observed with the growing atomic number of the pnictogen atom, along with a boost in k r and k nr at 77 K. Down the V th main group and upon coordination of the Pn atom to the Re(I) center, an increasingly prominent jump of s-orbital participation on the binding s x p 3.00 -orbitals of the Pn atoms is evidenced. Based on these findings, the ability of these complexes to act as tunable photoluminescent labels able to perform as light-driven CO-releasing molecules is envisioned.

The electronic states of poly(9,9-dioctylfluorenyl- alt -bithiophene) pF8T2 on H/Si(100) substrates, prototypical for organic photovoltaics, were investigated by ultrafast photoelectron spectroscopy and by time-resolved fluorescence studies. Occupied and unoccupied electronic states were analysed by ultraviolet photoelectron spectroscopy (UPS), static and dynamic femtosecond two-photon photoemission (2PPE), and time-correlated single photon counting (TCSPC). Time-resolved measurements allow assessment of population lifetimes of intermediate states. The combination of time-resolved photoelectron spectroscopy and fluorescence excitation allows following the electronic dynamics in excited states from the femtosecond to the nanosecond time scale. For this prototypical material the electron kinetic energy resolved lifetimes range from about a few tens of femtoseconds up to hundreds of picoseconds. After annealing these types of organic thin films the efficiency of organic solar cells usually increases. We show that annealing does not influence the initial ultrafast charge generation processes, but the long-lived states. However, the nanosecond scale fluorescence lifetimes measured by TCSPC are prolonged after annealing, which therefore is identified as the cause of a greater exciton diffusion range and thus is beneficial for charge carrier extraction.

In this study, the insertion of different monodentate co-ligands on Pt(II) complexes bearing a monoanionic C^N*N luminophore as a tridentate chelator was achieved beyond the previously reported chlorido- ([ PtCl(L) ]) and cyanido-decorated ([ PtCN(L) ]) analogues. To investigate the impact of the auxiliary ligand on the photophysical properties, we introduced a neutral carbonyl-ligand and observed a lower photoluminescence quantum yield ( Φ L ) than with a cyanido moiety. However, the direct substitution of the chlorido co-ligand by a NO-related derivative was not successful. Interestingly, the attempted reduction of the successfully inserted nitrito- N -ligand in [ PtNO 2 (L) ] resulted in the oxidation of the Pt(II)-center to Pt(IV), as demonstrated by X-ray diffractometry. For comparison, the trifluoroacetato Pt(II) and chlorido Pt(IV) complexes ([ PtTFA(L) ] and [ PtCl 3 (L) ], respectively) were also synthesized. The photophysical characterization revealed similar photoluminescence profiles for all complexes, indicating a weak effect of the co-ligand on the excited state; in fact, all complexes display emission from metal-perturbed ligand-centered states (even the Pt(IV) species). Nonetheless, longer excited state lifetimes ( τ av ) suggest a reduced thermally-activated radiationless deactivation via metal-centered states upon exchange of the chlorido units for other monodentate entities, yet without significantly improving the overall Φ L at room temperature. The irreversible oxidation waves (measured via cyclic voltammetry) mostly stem from the Pt(II)-center; the co-ligand-related drop of these potentials correlates with the increasing σ -donating capacities of the ancillary ligand. In summary, an enhanced π -acceptor capacity does not necessarily improve the Φ L and can even impair radiative rates by compromising the perturbative participation of the metal center on the emissive triplet state; in addition, strong σ -donor abilities improve the phosphorescence efficiencies by hampering the thermal population of dissociative electronic configurations related to the participation of antibonding d *-orbitals at the metal center.

The activation of at least 23 different mammalian kinases requires the phosphorylation of their hydrophobic motifs by the kinase PDK1. A linker connects the phosphoinositide-binding PH domain to the catalytic domain, which contains a docking site for substrates called the PIF pocket. Here, we used a chemical biology approach to show that PDK1 existed in equilibrium between at least three distinct conformations with differing substrate specificities. The inositol polyphosphate derivative HYG8 bound to the PH domain and disrupted PDK1 dimerization by stabilizing a monomeric conformation in which the PH domain associated with the catalytic domain and the PIF pocket was accessible. In the absence of lipids, HYG8 potently inhibited the phosphorylation of Akt (also termed PKB) but did not affect the intrinsic activity of PDK1 or the phosphorylation of SGK, which requires docking to the PIF pocket. In contrast, the small-molecule valsartan bound to the PIF pocket and stabilized a second distinct monomeric conformation. Our study reveals dynamic conformations of full-length PDK1 in which the location of the linker and the PH domain relative to the catalytic domain determines the selective phosphorylation of PDK1 substrates. The study further suggests new approaches for the design of drugs to selectively modulate signaling downstream of PDK1.

Single molecule fluorescence localization microscopy provides molecular localization with a precision in the tens of nanometer range in the plane perpendicular to the light propagation. This opens the possibility to count molecules and correlate their locations, starting from a map of the actual positions in a single molecule super resolution image. Considering molecular pair correlation as an indication of interaction, and a way to discern them from free molecules, we describe a method to calculate thermodynamic equilibrium constants. In this work, we use as a test system two complementary homo-oligonucleotides, one strand marked with Cyanine 3.5 and the other with Alexa Fluor 647. Hybridization is controlled by the amount of each strand, temperature, and the ionic force, and measured in steady state emission. The same samples are examined in Stochastic Optical Reconstruction Microscopy (STORM) experiments with split-field simultaneous two-colour detection. The effect of multiblinking, labelling-detection efficiency, and determination of the critical distance for association are discussed. We consistently determine values in STORM coincident with those of the bulk experiment., (© 2022. The Author(s), under exclusive licence to European Photochemistry Association, European Society for Photobiology.)

The facile functionalization of the fluorene scaffold at the 2,7-positions was utilized to provide access to two soluble carbazole-π-carbazole derivatives CFC-H1 and CFC-F1 featuring fully hydrogenated and polyfluorinated alkyl chains at the 9-position of the fluorene π-bridging unit, respectively. The optical and electrochemical properties of the new dicarbazoles were investigated. Their electrochemical polymerization over Pt and indium tin oxide electrodes allowed the generation of electroactive polymeric films, whose physicochemical characteristics were strongly dependent on the kind of alkyl chain present on the fluorene bridge. In particular, the electropolymerization of the polyfluorinated monomer allowed the fabrication of thin films with good electrical conductivity, reversible electrochemical processes, good electrochromic properties, and enhanced water repellency with respect to its nonfluorinated analogue.

Lead sulfide (PbS) nanoparticles were synthesized by chemical methods with different sizes and different capping ligands (oleic acid, myristic acid, and hexanoic acid), avoiding ligand exchange procedures, to study the effect of characteristics of the capping ligands on their energy levels and band gap values. Experimental results (UV-vis-NIR, Fourier transform infrared, and Raman spectroscopies, cyclic voltammetry, transmission electron microscopy, and electron energy loss spectroscopy) showed a marked influence of the capping ligand nature on the electro-optical properties of PbS nanoparticles with a very similar size. Differences were observed in the atomistic arrangement on the nanoparticle surface and phonon vibrations with the different capping ligands. These observations suggest that the electro-optical properties of PbS nanoparticles are not only determined by their size, through quantum confinement effects, but also strongly affected by the atomistic arrangement on the nanoparticle surface, which is determined by the capping ligand nature., Competing Interests: The authors declare no competing financial interest.