1. Molecular subtyping reveals immune alterations associated with progression of bronchial premalignant lesions.
- Author
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Beane JE, Mazzilli SA, Campbell JD, Duclos G, Krysan K, Moy C, Perdomo C, Schaffer M, Liu G, Zhang S, Liu H, Vick J, Dhillon SS, Platero SJ, Dubinett SM, Stevenson C, Reid ME, Lenburg ME, and Spira AE
- Subjects
- Antineoplastic Agents, Immunological pharmacology, Antineoplastic Agents, Immunological therapeutic use, Biomarkers, Tumor immunology, Biopsy, Bronchi diagnostic imaging, Bronchi immunology, Bronchi pathology, Bronchoscopy, Carcinoma, Bronchogenic genetics, Carcinoma, Bronchogenic immunology, Carcinoma, Bronchogenic prevention & control, Cohort Studies, Datasets as Topic, Disease Progression, Early Detection of Cancer methods, Gene Expression Profiling, Gene Regulatory Networks genetics, Gene Regulatory Networks immunology, Humans, Immunity, Cellular drug effects, Immunity, Cellular genetics, Lung Neoplasms genetics, Lung Neoplasms immunology, Lung Neoplasms prevention & control, Mass Screening methods, Middle Aged, Precancerous Conditions diagnostic imaging, Precancerous Conditions genetics, Precancerous Conditions immunology, RNA, Messenger genetics, Respiratory Mucosa cytology, Respiratory Mucosa diagnostic imaging, Respiratory Mucosa immunology, Respiratory Mucosa pathology, Sequence Analysis, RNA, T-Lymphocytes immunology, Tomography, X-Ray Computed, Up-Regulation, Biomarkers, Tumor genetics, Carcinoma, Bronchogenic pathology, Gene Expression Regulation, Neoplastic immunology, Lung Neoplasms pathology, Precancerous Conditions pathology
- Abstract
Bronchial premalignant lesions (PMLs) are precursors of lung squamous cell carcinoma, but have variable outcome, and we lack tools to identify and treat PMLs at risk for progression to cancer. Here we report the identification of four molecular subtypes of PMLs with distinct differences in epithelial and immune processes based on RNA-Seq profiling of endobronchial biopsies from high-risk smokers. The Proliferative subtype is enriched with bronchial dysplasia and exhibits up-regulation of metabolic and cell cycle pathways. A Proliferative subtype-associated gene signature identifies subjects with Proliferative PMLs from normal-appearing uninvolved large airway brushings with high specificity. In progressive/persistent Proliferative lesions expression of interferon signaling and antigen processing/presentation pathways decrease and immunofluorescence indicates a depletion of innate and adaptive immune cells compared with regressive lesions. Molecular biomarkers measured in PMLs or the uninvolved airway can enhance histopathological grading and suggest immunoprevention strategies for intercepting the progression of PMLs to lung cancer.
- Published
- 2019
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