1. CardioMEA: comprehensive data analysis platform for studying cardiac diseases and drug responses.
- Author
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Lee, Jihyun, Duperrex, Eliane, El-Battrawy, Ibrahim, Hohn, Alyssa, Saguner, Ardan M., Duru, Firat, Emmenegger, Vishalini, Cyganek, Lukas, Hierlemann, Andreas, and Ulusan, Hasan
- Subjects
ARRHYTHMIA ,MYOCARDIAL depressants ,PLURIPOTENT stem cells ,CARDIOVASCULAR agents ,TECHNOLOGICAL innovations - Abstract
Introduction: In recent years, high-density microelectrode arrays (HD-MEAs) have emerged as a valuable tool in preclinical research for characterizing the electrophysiology of human induced pluripotent stem-cell-derived cardiomyocytes (iPSC-CMs). HD-MEAs enable the capturing of both extracellular and intracellular signals on a large scale, while minimizing potential damage to the cell. However, despite technological advancements of HD-MEAs, there is a lack of effective data-analysis platforms that are capable of processing and analyzing the data, particularly in the context of cardiac arrhythmias and drug testing. Methods: To address this need, we introduce CardioMEA, a comprehensive data-analysis platform designed specifically for HD-MEA data that have been obtained from iPSCCMs. CardioMEA features scalable data processing pipelines and an interactive web-based dashboard for advanced visualization and analysis. In addition to its core functionalities, CardioMEA incorporates modules designed to discern crucial electrophysiological features between diseased and healthy iPSC-CMs. Notably, CardioMEA has the unique capability to analyze both extracellular and intracellular signals, thereby facilitating customized analyses for specific research tasks. Results and discussion: We demonstrate the practical application of CardioMEA by analyzing electrophysiological signals from iPSC-CM cultures exposed to seven antiarrhythmic drugs. CardioMEA holds great potential as an intuitive, userfriendly platform for studying cardiac diseases and assessing drug effects. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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