31 results on '"Carnesecchi E"'
Search Results
2. Predicting acute contact toxicity of pesticides in honeybees (Apis mellifera) through a k-nearest neighbor model
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Como, F., Carnesecchi, E., Volani, S., Dorne, J.L., Richardson, J., Bassan, A., Pavan, M., and Benfenati, E.
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- 2017
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3. P24-22: EFSA's Compendium of Botanicals: An open-source database for hazard identification of botanicals and botanical preparations
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Nathanail, A., primary, Kouloura, E., additional, Spyropoulos, F., additional, Carnesecchi, E., additional, Belmonte, L., additional, Gibin, D., additional, Dorne, J.-L. C., additional, Nicova, K., additional, Nic, M., additional, Novotny, T., additional, Vejvodova, P., additional, Singh, K., additional, Plodikova, P., additional, Neubauerova, T., additional, Gamaoun, R., additional, Seryak, L., additional, Dibusz, K., additional, and Bottex, B., additional
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- 2023
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4. P25-07: Development of a Read-Across Model Including Metabolites as well as Chemical, Toxicological and Mechanistic Information
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Irwan, J., primary, Wehr, M., additional, Nathanail, A., additional, Tangianu, S., additional, Carnesecchi, E., additional, Simetska, N., additional, Kellner, R., additional, Kass, G., additional, and Escher, S., additional
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- 2023
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5. P22-24 Identification of the applicability domain for the use of read-across in food safety – development of read-across concept integrating metabolites
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Irwan, J., primary, Carnesecchi, E., additional, Kass, G., additional, Nathanail, A., additional, Simetska, N., additional, Kellner, R., additional, and Escher, S., additional
- Published
- 2022
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6. Evaluation of non-commercial models for genotoxicity and carcinogenicity in the assessment of EFSA’s databases
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Carnesecchi, E., primary, Raitano, G., additional, Gamba, A., additional, Benfenati, E., additional, and Roncaglioni, A., additional
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- 2019
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7. Investigating combined toxicity of binary mixtures in bees: Meta-analysis of laboratory tests, modelling, mechanistic basis and implications for risk assessment
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Carnesecchi, E., Svendsen, C., Lasagni, S., Grech, A., Quignot, N., Amzal, B., Toma, C., Tosi, S., Rortais, A., Cortinas-Abrahantes, J., Capri, E., Kramer, N., Benfenati, E., Spurgeon, D., Guillot, G., Dorne, J. L. C. M., Capri E. (ORCID:0000-0003-0894-1991), Carnesecchi, E., Svendsen, C., Lasagni, S., Grech, A., Quignot, N., Amzal, B., Toma, C., Tosi, S., Rortais, A., Cortinas-Abrahantes, J., Capri, E., Kramer, N., Benfenati, E., Spurgeon, D., Guillot, G., Dorne, J. L. C. M., and Capri E. (ORCID:0000-0003-0894-1991)
- Abstract
Bees are exposed to a wide range of multiple chemicals “chemical mixtures” from anthropogenic (e.g. plant protection products or veterinary products) or natural origin (e.g. mycotoxins, plant toxins). Quantifying the relative impact of multiple chemicals on bee health compared with other environmental stressors (e.g. varroa, viruses, and nutrition) has been identified as a priority to support the development of holistic risk assessment methods. Here, extensive literature searches and data collection of available laboratory studies on combined toxicity data for binary mixtures of pesticides and non-chemical stressors has been performed for honey bees (Apis mellifera), wild bees (Bombus spp.) and solitary bee species (Osmia spp.). From 957 screened publications, 14 publications provided 218 binary mixture toxicity data mostly for acute mortality (lethal dose: LD50) after contact exposure (61%), with fewer studies reporting chronic oral toxicity (20%) and acute oral LC50 values (19%). From the data collection, available dose response data for 92 binary mixtures were modelled using a Toxic Unit (TU) approach and the MIXTOX modelling tool to test assumptions of combined toxicity i.e. concentration addition (CA), and interactions (i.e. synergism, antagonism). The magnitude of interactions was quantified as the Model Deviation Ratio (MDR). The CA model applied to 17% of cases while synergism and antagonism were observed for 72% (MDR > 1.25) and 11% (MDR < 0.83) respectively. Most synergistic effects (55%) were observed as interactions between sterol-biosynthesis-inhibiting (SBI) fungicides and insecticide/acaricide. The mechanisms behind such synergistic effects of binary mixtures in bees are known to involve direct cytochrome P450 (CYP) inhibition, resulting in an increase in internal dose and toxicity of the binary mixture. Moreover, bees are known to have the lowest number of CYP copies and other detoxification enzymes in the insect kingdom. In the light of these
- Published
- 2019
8. Evaluation of non-commercial models for genotoxicity and carcinogenicity in the assessment of EFSA's databases.
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Carnesecchi, E., Raitano, G., Gamba, A., Benfenati, E., and Roncaglioni, A.
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GENETIC toxicology , *CARCINOGENICITY , *BACTERIAL mutation , *STRUCTURE-activity relationships , *DIETARY supplements , *PUBLIC domain , *DATABASES - Abstract
Over the past years, the European Food Safety Authority (EFSA) released to the public domain several databases, with the main objectives of collecting and storing hazard data on the substances considered in EFSA's risk assessment and secondly to serve as a basis for further development of in silico tools such as quantitative structure–activity relationship (QSAR) models. In this work, we evaluated the ability of freely available QSAR models to estimate genotoxicity and carcinogenicity properties and their possible use for screening purposes on three different EFSA's databases. With an accuracy close to 90%, the results showed good capabilities of QSAR models to predict genotoxicity in terms of bacterial reverse mutation test, while statistics for in vivo micronucleus test are not satisfactory (accuracy in the predictions close to 50%). Interestingly, results on the carcinogenicity assessment showed an accuracy in prediction close to 70% for the best models. In addition, an example of the potential application of in silico models is presented in order to provide a preliminary screening of genotoxicity properties of botanicals intended for use as food supplements. [ABSTRACT FROM AUTHOR]
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- 2020
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9. Diffusion model applied to assessment of children health impact
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Casini, B, primary, Carnesecchi, E, additional, Totaro, M, additional, Privitera, G, additional, and Baggiani, A, additional
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- 2015
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10. Presence of Legionella in water networks of italian residential buildings
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Totaro, M, primary, Carnesecchi, E, additional, Valentini, P, additional, Porretta, A, additional, Bruni, B, additional, Privitera, G, additional, Casini, B, additional, and Baggiani, A, additional
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- 2015
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11. Evaluation of the ecological risk of pesticide residues from the European LUCAS Soil monitoring 2018 survey.
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Franco A, Vieira D, Clerbaux LA, Orgiazzi A, Labouyrie M, Köninger J, Silva V, van Dam R, Carnesecchi E, Dorne JLCM, Vuaille J, Lobo Vicente J, and Jones A
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- Risk Assessment, Soil chemistry, European Union, Environmental Monitoring methods, Soil Pollutants analysis, Pesticide Residues analysis
- Abstract
The 2018 LUCAS (Land Use and Coverage Area frame Survey) Soil Pesticides survey provides a European Union (EU)-scale assessment of 118 pesticide residues in more than 3473 soil sites. This study responds to the policy need to develop risk-based indicators for pesticides in the environment. Two mixture risk indicators are presented for soil based, respectively, on the lowest and the median of available No Observed Effect Concentration (NOEC
soil,min and NOECsoil,50 ) from publicly available toxicity datasets. Two further indicators were developed based on the corresponding equilibrium concentration in the aqueous phase and aquatic toxicity data, which are available as species sensitivity distributions. Pesticides were quantified in 74.5% of the sites. The mixture risk indicator based on the NOECsoil,min exceeds 1 in 14% of the sites and 0.1 in 23%. The insecticides imidacloprid and chlorpyrifos and the fungicide epoxiconazole are the largest contributors to the overall risk. At each site, one or a few substances drive mixture risk. Modes of actions most likely associated with mixture effects include modulation of acetylcholine metabolism (neonicotinoids and organophosphate substances) and sterol biosynthesis inhibition (triazole fungicides). Several pesticides driving the risk have been phased out since 2018. Following LUCAS surveys will determine the effectiveness of substance-specific risk management and the overall progress toward risk reduction targets established by EU and UN policies. Newly generated data and knowledge will stimulate needed future research on pesticides, soil health, and biodiversity protection. Integr Environ Assess Manag 2024;20:1639-1653. © 2024 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC)., (© 2024 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).)- Published
- 2024
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12. Scientific opinion on the renewal of the authorisation of Fumokomp (SF-009) as a smoke flavouring Primary Product.
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Younes M, Aquilina G, Castle L, Degen G, Engel KH, Fowler PJ, Frutos Fernandez MJ, Fürst P, Gundert-Remy U, Gürtler R, Husøy T, Manco M, Moldeus P, Passamonti S, Shah R, Waalkens-Berendsen I, Wright M, Benigni R, Boon P, Bolognesi C, Cordelli E, Chipman K, Sahlin U, Carfì M, Carnesecchi E, Martino C, Multari S, Palaniappan V, Tard A, and Mennes W
- Abstract
The EFSA Panel on Food Additives and Flavourings (FAF) was requested to evaluate the safety of the smoke flavouring Primary Product Fumokomp (SF-009), for which a renewal application was submitted in accordance with Article 12(1) of Regulation (EC) No 2065/2003 (in the renewal application the Primary Product is reported as 'Fumokomp Conc.'). This opinion refers to an assessment of data submitted on chemical characterisation, dietary exposure and genotoxicity of the Primary Product. Fumokomp Conc. is produced by pyrolysis of beech and hornbeam woods. Gas chromatography-mass spectrometry (GC-MS) was applied for both identification and quantification of the volatile constituents of the Primary Product. Given the limitations of the method, the Panel cannot judge with confidence whether the applied method meets the legal quality criterion that at least 80% of the volatile fraction shall be identified and quantified. Moreover, the Panel concluded that the absence of furan-2(5 H )-one from the Primary Product was not convincingly demonstrated. At the maximum proposed use levels, dietary exposure estimates calculated with FAIM ranged from 0.04 to 0.9 mg/kg body weight (bw) per day at the mean and from 0.1 to 1.5 mg/kg bw per day at the 95th percentile. The information available on the 32 identified components of the Primary Product, although limited, did not indicate a concern for genotoxicity for any of these substances. However, whole mixture testing in an in vitro mouse lymphoma assay gave positive results which would require an adequate in vivo follow-up study. In addition, the potential for aneugenicity of the Primary Product has not been adequately investigated. Accordingly, the potential safety concern for genotoxicity of the Primary Product cannot be ruled out., (© 2023 European Food Safety Authority. EFSA Journal published by Wiley‐VCH GmbH on behalf of European Food Safety Authority.)
- Published
- 2023
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13. Scientific opinion on the renewal of the authorisation of Scansmoke SEF7525 (SF-004) as a smoke flavouring Primary Product.
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Younes M, Aquilina G, Castle L, Degen G, Engel KH, Fowler PJ, Frutos Fernandez MJ, Fürst P, Gundert-Remy U, Gürtler R, Husøy T, Manco M, Moldeus P, Passamonti S, Shah R, Waalkens-Berendsen I, Wright M, Benigni R, Boon P, Bolognesi C, Cordelli E, Chipman K, Sahlin U, Carfì M, Carnesecchi E, Martino C, Mech A, Multari S, Palaniappan V, Tard A, and Mennes W
- Abstract
The EFSA Panel on Food Additives and Flavourings (FAF) was requested to evaluate the safety of the smoke flavouring Primary Product Scansmoke SEF7525 (SF-004), for which a renewal application was submitted in accordance with Article 12(1) of Regulation (EC) No 2065/2003. This opinion refers to the assessment of data submitted on chemical characterisation, dietary exposure and genotoxicity of the Primary Product. Scansmoke SEF7525 is obtained from a tar produced from a mixture of red oak, white oak, maple, beech and hickory. Based on the compositional data, the Panel noted that the identified and quantified proportion of the solvent-free fraction amounts to 32.6 weight (wt)%, thus the applied method does not meet the legal quality criterion that at least 50% of the solvent-free fraction shall be identified and quantified. At the maximum proposed use levels, dietary exposure estimates calculated with Food Additive Intake Model (FAIM) ranged from 0.6 to 3.8 mg/kg body weight (bw) per day at the mean and from 1.1 to 10.1 mg/kg bw per day at the 95th percentile. Based on the available information on genotoxicity on 44 identified components, the Panel concluded that two substances in the Primary Product, styrene and benzofuran, raise a potential concern for genotoxicity. In addition, a potential concern for genotoxicity was identified for the unidentified part of the mixture. Considering that the exposure estimates for styrene and benzofuran are above the threshold of toxicological concern (TTC) value of 0.0025 kg/kg bw per day for DNA-reactive mutagens and/or carcinogens and since further data are needed to clarify their potential genotoxicity, the Panel concluded that the potential safety concern for genotoxicity of the Primary Product cannot be ruled out., (© 2023 European Food Safety Authority. EFSA Journal published by Wiley‐VCH GmbH on behalf of European Food Safety Authority.)
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- 2023
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14. TKPlate 1.0: An Open-access platform for toxicokinetic and toxicodynamic modelling of chemicals to implement new approach methodologies in chemical risk assessment.
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Dorne JLCM, Cortiñas-Abrahantes J, Spyropoulos F, Darney K, Lautz L, Louisse J, Kass GEN, Carnesecchi E, Liem AKD, Tarazona JV, Billat PA, Beaudoin R, Zeman F, Bodin C, Smith A, Nathanail A, Di Nicola MR, Kleiner J, Terron A, Parra-Morte JM, Verloo D, and Robinson T
- Abstract
This publication is linked to the following EFSA Supporting Publications articles: http://onlinelibrary.wiley.com/doi/10.2903/sp.efsa.2023.EN-8441/full, http://onlinelibrary.wiley.com/doi/10.2903/sp.efsa.2023.EN-8440/full, http://onlinelibrary.wiley.com/doi/10.2903/sp.efsa.2023.EN-8437/full., Competing Interests: If you wish to access the declaration of interests of any expert contributing to an EFSA scientific assessment, please contact interestmanagement@efsa.europa.eu., (© 2023 European Food Safety Authority. EFSA Journal published by Wiley‐VCH GmbH on behalf of European Food Safety Authority.)
- Published
- 2023
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15. Machine learning - based q-RASAR modeling to predict acute contact toxicity of binary organic pesticide mixtures in honey bees.
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Chatterjee M, Banerjee A, Tosi S, Carnesecchi E, Benfenati E, and Roy K
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- Bees, Animals, Reproducibility of Results, Algorithms, Machine Learning, Quantitative Structure-Activity Relationship, Pesticides toxicity
- Abstract
We have reported here a quantitative read-across structure-activity relationship (q-RASAR) model for the prediction of binary mixture toxicity (acute contact toxicity) in honey bees. Both the quantitative structure-activity relationship (QSAR) and the similarity-based read-across algorithms are used simultaneously for enhancing the predictability of the model. Several similarity and error-based parameters, obtained from the read-across prediction tool, have been put together with the structural and physicochemical descriptors to develop the final q-RASAR model. The calculated statistical and validation metrics indicate the goodness-of-fit, robustness, and good predictability of the partial least squares (PLS) regression model. Machine learning algorithms like ridge regression, linear support vector machine (SVM), and non-linear SVM have been used to further enhance the predictability of the q-RASAR model. The prediction quality of the q-RASAR models outperforms the previously reported quasi-SMILEs-based QSAR model in terms of external correlation coefficient (Q
2 F1 SVM q-RASAR: 0.935 vs. Q2 VLD QSAR: 0.89). In this research, the toxicity values of several new untested binary mixtures have been predicted with the new models, and the reliability of the PLS predictions has been validated by the prediction reliability indicator tool. The q-RASAR approach can be used as reliable, complementary, and integrative to the conventional experimental approaches of pesticide mixture risk assessment., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)- Published
- 2023
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16. OECD harmonised template 201: Structuring and reporting mechanistic information to foster the integration of new approach methodologies for hazard and risk assessment of chemicals.
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Carnesecchi E, Langezaal I, Browne P, Batista-Leite S, Campia I, Coecke S, Dagallier B, Deceuninck P, Dorne JLC, Tarazona JV, Le Goff F, Leinala E, Morath S, Munn S, Richardson J, Paini A, and Wittwehr C
- Subjects
- Humans, Risk Assessment methods, Organisation for Economic Co-Operation and Development, Skin
- Abstract
In the European Union, the Chemicals Strategy for Sustainability (CSS) highlights the need to enhance the identification and assessment of substances of concern while reducing animal testing, thus fostering the development and use of New Approach Methodologies (NAMs) such as in silico, in vitro and in chemico. In the United States, the Tox21 strategy aims at shifting toxicological assessments away from traditional animal studies towards target-specific, mechanism-based and biological observations mainly obtained by using NAMs. Many other jurisdictions around the world are also increasing the use of NAMs. Hence, the provision of dedicated non-animal toxicological data and reporting formats as a basis for chemical risk assessment is necessary. Harmonising data reporting is crucial when aiming at re-using and sharing data for chemical risk assessment across jurisdictions. The OECD has developed a series of OECD Harmonised Templates (OHT), which are standard data formats designed for reporting information used for the risk assessment of chemicals relevant to their intrinsic properties, including effects on human health (e.g., toxicokinetics, skin sensitisation, repeated dose toxicity) and the environment (e.g., toxicity to test species and wildlife, biodegradation in soil, metabolism of residues in crops). The objective of this paper is to demonstrate the applicability of the OHT standard format for reporting information under various chemical risk assessment regimes, and to provide users with practical guidance on the use of OHT 201, in particular to report test results on intermediate effects and mechanistic information., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier Inc.)
- Published
- 2023
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17. The VEGA Tool to Check the Applicability Domain Gives Greater Confidence in the Prediction of In Silico Models.
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Danieli A, Colombo E, Raitano G, Lombardo A, Roncaglioni A, Manganaro A, Sommovigo A, Carnesecchi E, Dorne JCM, and Benfenati E
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- Humans, Computer Simulation, Risk Assessment methods, Ecotoxicology
- Abstract
A sound assessment of in silico models and their applicability domain can support the use of new approach methodologies (NAMs) in chemical risk assessment and requires increasing the users' confidence in this approach. Several approaches have been proposed to evaluate the applicability domain of such models, but their prediction power still needs a thorough assessment. In this context, the VEGA tool capable of assessing the applicability domain of in silico models is examined for a range of toxicological endpoints. The VEGA tool evaluates chemical structures and other features related to the predicted endpoints and is efficient in measuring applicability domain, enabling the user to identify less accurate predictions. This is demonstrated with many models addressing different endpoints, towards toxicity of relevance to human health, ecotoxicological endpoints, environmental fate, physicochemical and toxicokinetic properties, for both regression models and classifiers.
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- 2023
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18. The use of new approach methodologies for the environmental risk assessment of food and feed chemicals.
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Nicola MRD, Cattaneo I, Nathanail AV, Carnesecchi E, Astuto MC, Steinbach M, Williams AJ, Charles S, Gestin O, Lopes C, Lamonica D, Tarazona JV, and Dorne JLCM
- Abstract
New Approach Methodologies (NAMs) provide tools for supporting both human and environmental risk assessment (HRA and ERA). This short review provides recent insights regarding the use of NAMs in ERA of food and feed chemicals. We highlight the usefulness of tiered methods supporting weight-of-evidence approaches in relation to problem formulation (i.e., data availability, time, and resource availability). In silico models, including quantitative structure activity relationship models, support filling data gaps when no chemical property or ecotoxicological data are available, and biologically-based models (e.g., toxicokinetic-toxicodynamic models, dynamic energy models, physiologically-based models and species sensitivity distributions) are applicable in more data rich situations, including landscape-based modelling approaches. Particular attention is given to provide practical examples to apply the approaches described in real-world settings. We conclude with future perspectives, with regards to the need for addressing complex challenges such as chemical mixtures and multiple stressors in a wide range of organisms and ecosystems.
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- 2023
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19. Lethal, sublethal, and combined effects of pesticides on bees: A meta-analysis and new risk assessment tools.
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Tosi S, Sfeir C, Carnesecchi E, vanEngelsdorp D, and Chauzat MP
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- Acetylcholinesterase, Animals, Bees, Neonicotinoids, Risk Assessment, Insecticides, Pesticides toxicity
- Abstract
Multiple stressors threaten bee health, a major one being pesticides. Bees are simultaneously exposed to multiple pesticides that can cause both lethal and sublethal effects. Risk assessment and most research on bee health, however, focus on lethal individual effects. Here, we performed a systematic literature review and meta-analysis that summarizes and re-interprets the available qualitative and quantitative information on the lethal, sublethal, and combined toxicity of a comprehensive range of pesticides on bees. We provide results (1970-2019) for multiple bee species (Bombus, Osmia, Megachile, Melipona, Partamona, Scaptotrigona), although most works focused on Apis mellifera L. (78 %). Our harmonised results document the lethal toxicity of pesticides in bees (n = 377 pesticides) and the types of sublethal testing methods and related effects that cause a sublethal effect (n = 375 sublethal experiments). We identified the most common combinations of pesticides and mode of actions tested, and summarize the experimental methods, magnitude of the interactions, and robustness of available data (n = 361 experiments). We provide open access searchable, comprehensive, and integrated list of pesticides and their levels causing lethal, sublethal, and combined effects. We report major data gaps related to pesticide's sublethal (71 %) and combined (e.g., ~99 %) toxicity. We identified pesticides and mode of actions of greatest concern in terms of sublethal (chlorothalonil, pymetrozine, glyphosate; neonicotinoids) and combined (tau-fluvalinate combinations; acetylcholinesterase inhibitors and neonicotinoids) effects. Although certain pesticides have faced regulatory restrictions in specific countries (chlorothalonil, pymetrozine, neonicotinoids), most are still widely used worldwide (e.g., glyphosate). This work aims at facilitating the implementation of more comprehensive and harmonised research and risk assessments, considering sublethal and combined effects. To ensure safeguarding pollinators and the environment, we advocate for a more refined and holistic assessment that do not only focus on lethality but uses harmonised methods to test sublethal and relevant combinations., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier B.V. All rights reserved.)
- Published
- 2022
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20. A regression-based QSAR-model to predict acute toxicity of aromatic chemicals in tadpoles of the Japanese brown frog (Rana japonica): Calibration, validation, and future developments to support risk assessment of chemicals in amphibians.
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Toropov AA, Di Nicola MR, Toropova AP, Roncaglioni A, Carnesecchi E, Kramer NI, Williams AJ, Ortiz-Santaliestra ME, Benfenati E, and Dorne JCM
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- Animals, Calibration, Larva, Risk Assessment, Quantitative Structure-Activity Relationship, Ranidae
- Abstract
Amphibian populations are undergoing a global decline worldwide. Such decline has been attributed to their unique physiology, ecology, and exposure to multiple stressors including chemicals, temperature, and biological hazards such as fungi of the Batrachochytrium genus, viruses such as Ranavirus, and habitat reduction. There are limited toxicity data for chemicals available for amphibians and few quantitative structure-activity relationship (QSAR) models have been developed and are publicly available. Such QSARs provide important tools to assess the toxicity of chemicals particularly in a data poor context. QSARs provide important tools to assess the toxicity of chemicals particularly when no toxicological data are available. This manuscript provides a description and validation of a regression-based QSAR model to predict, in a quantitative manner, acute lethal toxicity of aromatic chemicals in tadpoles of the Japanese brown frog (Rana japonica). QSAR models for acute median lethal molar concentrations (LC50-12 h) of waterborne chemicals using the Monte Carlo method were developed. The statistical characteristics of the QSARs were described as average values obtained from five random distributions into training and validation sets. Predictions from the model gave satisfactory results for the overall training set (R
2 = 0.72 and RMSE = 0.33) and were even more robust for the validation set (R2 = 0.96 and RMSE = 0.11). Further development of QSAR models in amphibians, particularly for other life stages and species, are discussed., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Nynke I. Kramer reports financial support was provided by Lush. Edoardo Carnesecchi reports financial support was provided by Lush. Matteo R. Di Nicola reports financial support was provided by Lush. Emilio Benfenati reports financial support was provided by European Food Safety Authority., (Copyright © 2022 Elsevier B.V. All rights reserved.)- Published
- 2022
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21. QSAR models for soil ecotoxicity: Development and validation of models to predict reproductive toxicity of organic chemicals in the collembola Folsomia candida.
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Lavado GJ, Baderna D, Carnesecchi E, Toropova AP, Toropov AA, Dorne JLCM, and Benfenati E
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- Animals, Ecosystem, Organic Chemicals, Quantitative Structure-Activity Relationship, Reproduction, Soil, Arthropods, Soil Pollutants toxicity
- Abstract
Soil pollution is a critical environmental challenge: the substances released in the soil can adversely affect humans and the ecosystem. Several bioassays were developed to investigate the soil ecotoxicity of chemicals with soil microbes, plants, invertebrates and vertebrates. The 28-day collembolan reproduction test with the springtail Folsomia candida is a recently introduced bioassay described by OECD guideline 232. Although the importance of springtails for maintaining soil quality, toxicity data for Collembola are still limited. We have developed two QSAR models for the prediction of reproductive toxicity induced by organic compounds in Folsomia candida using 28 days NOEC data. We assembled a dataset with the highest number of compounds available so far: 54 compounds were collected from publicly available sources, including plant protection products, reactive intermediates and industrial chemicals, household and cosmetic ingredients, drugs, environmental transformation products and polycyclic aromatic hydrocarbons. The models were developed using partial least squares regression (PLS) and the Monte Carlo technique with respectively the open source tools Small Dataset Modeler and CORAL software. Both QSAR models gave good predictive performance even though based on a small dataset, so they could serve for the ecological risk assessment of chemicals for terrestrial organisms., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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22. In Silico Methods for Environmental Risk Assessment: Principles, Tiered Approaches, Applications, and Future Perspectives.
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Astuto MC, Di Nicola MR, Tarazona JV, Rortais A, Devos Y, Liem AKD, Kass GEN, Bastaki M, Schoonjans R, Maggiore A, Charles S, Ratier A, Lopes C, Gestin O, Robinson T, Williams A, Kramer N, Carnesecchi E, and Dorne JCM
- Subjects
- Computer Simulation, Quantitative Structure-Activity Relationship, Risk Assessment, Ecosystem, Ecotoxicology
- Abstract
This chapter aims to introduce the reader to the basic principles of environmental risk assessment of chemicals and highlights the usefulness of tiered approaches within weight of evidence approaches in relation to problem formulation i.e., data availability, time and resource availability. In silico models are then introduced and include quantitative structure-activity relationship (QSAR) models, which support filling data gaps when no chemical property or ecotoxicological data are available. In addition, biologically-based models can be applied in more data rich situations and these include generic or species-specific models such as toxicokinetic-toxicodynamic models, dynamic energy budget models, physiologically based models, and models for ecosystem hazard assessment i.e. species sensitivity distributions and ultimately for landscape assessment i.e. landscape-based modeling approaches. Throughout this chapter, particular attention is given to provide practical examples supporting the application of such in silico models in real-world settings. Future perspectives are discussed to address environmental risk assessment in a more holistic manner particularly for relevant complex questions, such as the risk assessment of multiple stressors and the development of harmonized approaches to ultimately quantify the relative contribution and impact of single chemicals, multiple chemicals and multiple stressors on living organisms., (© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2022
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23. Pesticides, cosmetics, drugs: identical and opposite influences of various molecular features as measures of endpoints similarity and dissimilarity.
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Toropov AA, Toropova AP, Marzo M, Carnesecchi E, Selvestrel G, and Benfenati E
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- Amines chemistry, Amines toxicity, Animals, Anti-Anxiety Agents chemistry, Anti-Anxiety Agents toxicity, Antidepressive Agents chemistry, Antidepressive Agents toxicity, Antipsychotic Agents chemistry, Antipsychotic Agents toxicity, Cosmetics chemistry, Cosmetics toxicity, HIV Protease Inhibitors chemistry, HIV Protease Inhibitors pharmacology, Haptens chemistry, Haptens toxicity, Humans, Lethal Dose 50, Local Lymph Node Assay, Mutagens chemistry, Mutagens toxicity, Oncorhynchus mykiss, Pesticides chemistry, Pesticides toxicity, Phenothiazines chemistry, Phenothiazines toxicity, Quantitative Structure-Activity Relationship, Salmonella typhimurium drug effects, Salmonella typhimurium genetics, Models, Molecular
- Abstract
The similarity is an important category in natural sciences. A measure of similarity for a group of various biochemical endpoints is suggested. The list of examined endpoints contains (1) toxicity of pesticides towards rainbow trout; (2) human skin sensitization; (3) mutagenicity; (4) toxicity of psychotropic drugs; and (5) anti HIV activity. Further applying and evolution of the suggested approach is discussed. In particular, the conception of the similarity (dissimilarity) of endpoints can play the role of a "useful bridge" between quantitative structure property/activity relationships (QSPRs/QSARs) and read-across technique.
- Published
- 2021
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24. Integrating QSAR models predicting acute contact toxicity and mode of action profiling in honey bees (A. mellifera): Data curation using open source databases, performance testing and validation.
- Author
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Carnesecchi E, Toma C, Roncaglioni A, Kramer N, Benfenati E, and Dorne JLCM
- Subjects
- Animals, Bees, Ecosystem, Quantitative Structure-Activity Relationship, Reproducibility of Results, Data Curation, Pesticides
- Abstract
Honey bees (Apis mellifera) provide key ecosystem services as pollinators bridging agriculture, the food chain and ecological communities, thereby ensuring food production and security. Ecological risk assessment of single Plant Protection Products (PPPs) requires an understanding of the exposure and toxicity. In silico tools such as QSAR models can play a major role for the prediction of structural, physico-chemical and pharmacokinetic properties of chemicals as well as toxicity of single and multiple chemicals. Here, the first integrative honey bee QSAR model has been developed for PPPs using EFSA's OpenFoodTox, US-EPA ECOTOX and Pesticide Properties DataBase i) to predict acute contact toxicity (LD
50 ) and ii) to profile the Mode of Action (MoA) of pesticides active substances. Three different classification-based and four regression-based models were developed and tested for their performance, thus identifying two models providing the most reliable predictions based on k-NN algorithm. The two-category QSAR model (toxic/non-toxic; n = 411) was validated using sensitivity (=0.93), specificity (=0.85), balanced accuracy (=0.90), and Matthews correlation coefficient (MCC = 0.78) as statistical parameters. The regression-based model (n = 113) was validated for its reliability and robustness (R2 = 0.74; MAE = 0.52). Current study proposes the MoA profiling for 113 pesticides active substances and the first harmonised MoA classification scheme for acute contact toxicity in honey bees, including LD50s data points from three different databases. The classification allows to further define MoAs and the target site of PPPs active substances, thus enabling regulators and scientists to refine chemical grouping and toxicity extrapolations for single chemicals and component-based mixture risk assessment of multiple chemicals. Relevant future perspectives are briefly addressed to integrate MoA, adverse outcome pathways (AOPs) and toxicokinetic information for the refinement of single-chemical/combined toxicity predictions and risk estimates at different levels of biological organization in the bee health context., Competing Interests: Declaration of competing interest Authors have no competing interests to declare., (Copyright © 2020 Elsevier B.V. All rights reserved.)- Published
- 2020
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25. The using of the Index of Ideality of Correlation (IIC) to improve predictive potential of models of water solubility for pesticides.
- Author
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Toropova AP, Toropov AA, Carnesecchi E, Benfenati E, and Dorne JL
- Subjects
- Monte Carlo Method, Quantitative Structure-Activity Relationship, Software, Solubility, Pesticides
- Abstract
Models for water solubility of pesticides suggested in this manuscript are important data from point of view of ecologic engineering. The Index of Ideality of Correlation (IIC) of groups of quantitative structure-property relationships (QSPRs) for water solubility of pesticides related to the calibration sets was used to identify good in silico models. This comparison confirmed the high IIC set provides better statistical quality of the model for the validation set. Though there are large databases on solubility, the reliable prediction of the endpoint for new substances which are potential pesticides is an important ecologic task. Unfortunately, predictive models for various endpoints suffer overtraining, and the IIC serves to avoid or at least reduce this. Thus, the approach suggested has both theoretical and economic effects for ecology.
- Published
- 2020
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26. First report on a classification-based QSAR model for chemical toxicity to earthworm.
- Author
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Roy J, Kumar Ojha P, Carnesecchi E, Lombardo A, Roy K, and Benfenati E
- Subjects
- Animals, Models, Biological, Quantitative Structure-Activity Relationship, Reproducibility of Results, Oligochaeta drug effects, Pesticides toxicity
- Abstract
As the use of the pesticides has increased extensively in the farming fields to have a better agricultural production, the negative impacts of such use have also increased exponentially. Hence, the toxic effects of pesticides along with the targeted organisms affect the non-targeted terrestrial organisms such as earthworm. Therefore, in the present work, we have developed a classification-based quantitative structure-activity relationship (QSAR) model using linear discriminant analysis (LDA) to capture the specific information of pesticides / diverse chemicals in order to determine the structural information responsible for toxicity manifestation towards the non-targeted organism, i.e., earthworm (Eisenia foetida). After variable selection, the model was developed using 2D descriptors only and was subjected to rigorous statistical validation. The best discriminant model obtained with 8 descriptors showed appreciable Wilks' λ value of 0.490, F (Fischer's statistics) value of 14.03, χ
2 value of 79.098, canonical regression coefficient (R) value of 0.714 and ρ value of 14.63. The sensitivity, specificity, accuracy, precision and F-measure values of the training set are 90.00, 80.52, 83.76, 70.59 and 79.12 respectively whereas for the test set, these are 58.82, 79.31, 71.74, 62.50 and 60.61 respectively. The insights obtained from the LDA model suggested that lipophilicity, electronrichness, and lower degree of branching of the organic compounds are responsible for earthworm toxicity through various mechanisms. On the other hand, polar and bulky diverse chemicals do not have such toxic effects on earthworm. Hence, this model can be an effective tool to tailor molecular structures of the existing pesticides to develop novel compounds or pesticides which would be less toxic to the non-targeted organisms, specifically earthworm., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2019 Elsevier B.V. All rights reserved.)- Published
- 2020
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27. Exploring QSAR modeling of toxicity of chemicals on earthworm.
- Author
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Ghosh S, Ojha PK, Carnesecchi E, Lombardo A, Roy K, and Benfenati E
- Subjects
- Animals, Hydrogen Bonding, Hydrophobic and Hydrophilic Interactions, Least-Squares Analysis, Pesticides chemistry, Quantitative Structure-Activity Relationship, Oligochaeta drug effects, Pesticides toxicity
- Abstract
Earthworm provides sustainability towards the agroecosystem which can be degraded day by day by the extensive use of pesticides (e.g., fungicides, insecticides and herbicides). The present study attempts to develop a predictive quantitative structure-activity relationship (QSAR) model for toxicity of pesticides to earthworm in order to give a suitable guidance for designing new analogues with lower toxicity by exploring the important chemical features which are required to develop safer alternatives. The QSAR model was developed by using the negative logarithm of lethal concentration (pLC
50 ) values of pesticides towards earthworm. We have used various 2D descriptors along with extended topochemical atom (ETA) indices as independent variables for the development of the model. The developed partial least squares (PLS) model was subjected to statistical validation tests proving that the model is statistically reliable and robust (R2 = 0.765, Q2 = 0.614, Q2 F1 = 0.734, Q2 F2 = 0.713). The contributing descriptors in the model suggested that the pesticides may affect the earthworm nucleic acid through various physicochemical interactions including hydrophobicity, hydrogen bonding, electron donor acceptor complex formation, π-π stacking interaction and charge transfer complex formation., (Copyright © 2019 Elsevier Inc. All rights reserved.)- Published
- 2020
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28. Predicting acute contact toxicity of organic binary mixtures in honey bees (A. mellifera) through innovative QSAR models.
- Author
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Carnesecchi E, Toropov AA, Toropova AP, Kramer N, Svendsen C, Dorne JL, and Benfenati E
- Subjects
- Animals, Bees, Reproducibility of Results, Environmental Pollutants toxicity, Quantitative Structure-Activity Relationship, Toxicity Tests, Acute
- Abstract
Pollinators such as honey bees are of considerable importance, because of the crucial pollination services they provide for food crops and wild plants. Since bees are exposed to a wide range of multiple chemicals "mixtures" both of anthropogenic (e.g. plant protection products) and natural origin (e.g. plant toxins), understanding their combined toxicity is critical. Although honey bees are employed worldwide as surrogate species for Apis and non-Apis bees in toxicity tests, it is practically unfeasible to perform in vivo tests for all mixtures of chemicals. Therefore, Quantitative Structure-Activity Relationships (QSAR) models can be developed using available data and can provide useful tools to predict such combined toxicity. Here, three different QSAR models within the CORAL software have been calibrated and validated for honey bees (A. mellifera) to predict the acute contact mixtures potency (LD
50-mix ), in two regression based-models, and the nature of combined toxicity (synergism / non-synergism) in a classification-based model. Experimental data on binary mixtures (n = 123) (LD50-mix ) including dose response data (n = 97) and corresponding Toxic Unit values were retrieved from EFSA databases. The models were built using the principle of extraction of attributes from SMILES (or quasi-SMILES) while calculating so-called correlation weights for these attributes using Monte Carlo techniques. The two regression models were validated for their reliability and robustness (R2 = 0.89, CCC = 0.92, Q2 = 0.81; R2 = 0.87, CCC = 0.89, Q2 = 0.75). The classification model was validated using sensitivity (=0.86), specificity (=1), accuracy (=0.96), and Matthews correlation coefficient (MCC = 0.90) as qualitative statistical validation parameters. Results indicate that these QSAR models successfully predict acute contact toxicity of binary mixtures in honey bees and can support prioritisation of multiple chemicals of concerns. Data gaps and further development of QSAR models for honey bees are highlighted particularly for chronic and sub-lethal effects., (Copyright © 2019 Elsevier B.V. All rights reserved.)- Published
- 2020
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29. Investigating combined toxicity of binary mixtures in bees: Meta-analysis of laboratory tests, modelling, mechanistic basis and implications for risk assessment.
- Author
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Carnesecchi E, Svendsen C, Lasagni S, Grech A, Quignot N, Amzal B, Toma C, Tosi S, Rortais A, Cortinas-Abrahantes J, Capri E, Kramer N, Benfenati E, Spurgeon D, Guillot G, and Dorne JLCM
- Subjects
- Animals, Lethal Dose 50, Risk Assessment, Bees, Fungicides, Industrial toxicity, Pesticides toxicity
- Abstract
Bees are exposed to a wide range of multiple chemicals "chemical mixtures" from anthropogenic (e.g. plant protection products or veterinary products) or natural origin (e.g. mycotoxins, plant toxins). Quantifying the relative impact of multiple chemicals on bee health compared with other environmental stressors (e.g. varroa, viruses, and nutrition) has been identified as a priority to support the development of holistic risk assessment methods. Here, extensive literature searches and data collection of available laboratory studies on combined toxicity data for binary mixtures of pesticides and non-chemical stressors has been performed for honey bees (Apis mellifera), wild bees (Bombus spp.) and solitary bee species (Osmia spp.). From 957 screened publications, 14 publications provided 218 binary mixture toxicity data mostly for acute mortality (lethal dose: LD
50 ) after contact exposure (61%), with fewer studies reporting chronic oral toxicity (20%) and acute oral LC50 values (19%). From the data collection, available dose response data for 92 binary mixtures were modelled using a Toxic Unit (TU) approach and the MIXTOX modelling tool to test assumptions of combined toxicity i.e. concentration addition (CA), and interactions (i.e. synergism, antagonism). The magnitude of interactions was quantified as the Model Deviation Ratio (MDR). The CA model applied to 17% of cases while synergism and antagonism were observed for 72% (MDR > 1.25) and 11% (MDR < 0.83) respectively. Most synergistic effects (55%) were observed as interactions between sterol-biosynthesis-inhibiting (SBI) fungicides and insecticide/acaricide. The mechanisms behind such synergistic effects of binary mixtures in bees are known to involve direct cytochrome P450 (CYP) inhibition, resulting in an increase in internal dose and toxicity of the binary mixture. Moreover, bees are known to have the lowest number of CYP copies and other detoxification enzymes in the insect kingdom. In the light of these findings, occurrence of these binary mixtures in relevant crops (frequency and concentrations) would need to be investigated. Addressing this exposure dimension remains critical to characterise the likelihood and plausibility of such interactions to occur under field realistic conditions. Finally, data gaps and further work for the development of risk assessment methods to assess multiple stressors in bees including chemicals and non-chemical stressors in bees are discussed., (Copyright © 2019. Published by Elsevier Ltd.)- Published
- 2019
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30. Vector-borne diseases.
- Author
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More S, Bicout D, Bøtner A, Butterworth A, Calistri P, De Koeijer A, Depner K, Edwards S, Garin-Bastuji B, Good M, Gortazar Schmidt C, Michel V, Miranda MA, Nielsen SS, Raj M, Sihvonen L, Spoolder H, Thulke HH, Velarde A, Willeberg P, Winckler C, Bau A, Beltran-Beck B, Carnesecchi E, Casier P, Czwienczek E, Dhollander S, Georgiadis M, Gogin A, Pasinato L, Richardson J, Riolo F, Rossi G, Watts M, Lima E, and Stegeman JA
- Abstract
After a request from the European Commission, EFSA's Panel on Animal Health and Welfare summarised the main characteristics of 36 vector-borne diseases (VBDs) in https://efsa.maps.arcgis.com/apps/PublicGallery/index.html?appid=dfbeac92aea944599ed1eb754aa5e6d1. The risk of introduction in the EU through movement of livestock or pets was assessed for each of the 36 VBDs individually, using a semiquantitative Method to INTegrate all relevant RISK aspects (MINTRISK model), which was further modified to a European scale into the http://www3.lei.wur.nl/mintrisk/ModelMgt.aspx. Only eight of the 36 VBD-agents had an overall rate of introduction in the EU (being the combination of the rate of entry, vector transmission and establishment) which was estimated to be above 0.001 introductions per year. These were Crimean-Congo haemorrhagic fever virus, bluetongue virus, West Nile virus, Schmallenberg virus, Hepatozoon canis , Leishmania infantum , Bunyamwera virus and Highlands J. virus. For these eight diseases, the annual extent of spread was assessed, assuming the implementation of available, authorised prevention and control measures in the EU. Further, the probability of overwintering was assessed, as well as the possible impact of the VBDs on public health, animal health and farm production. For the other 28 VBD-agents for which the rate of introduction was estimated to be very low, no further assessments were made. Due to the uncertainty related to some parameters used for the risk assessment or the instable or unpredictability disease situation in some of the source regions, it is recommended to update the assessment when new information becomes available. Since this risk assessment was carried out for large regions in the EU for many VBD-agents, it should be considered as a first screening. If a more detailed risk assessment for a specific VBD is wished for on a national or subnational level, the EFSA-VBD-RISK-model is freely available for this purpose., (© 2017 European Food Safety Authority. EFSA Journal published by John Wiley and Sons Ltd on behalf of European Food Safety Authority.)
- Published
- 2017
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31. Scientific and technical assistance concerning the survival, establishment and spread of Batrachochytrium salamandrivorans (Bsal) in the EU.
- Author
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Balàž V, Gortázar Schmidt C, Murray K, Carnesecchi E, Garcia A, Gervelmeyer A, Martino L, Munoz Guajardo I, Verdonck F, Zancanaro G, and Fabris C
- Abstract
A new fungus, Batrachochytrium salamandrivorans (Bsal), was identified in wild populations of salamanders in the Netherlands and Belgium, and in kept salamander populations in Germany and the United Kingdom. EFSA assessed the potential of Bsal to affect the health of wild and kept salamanders in the EU, the effectiveness and feasibility of a movement ban of traded salamanders, the validity, reliability and robustness of available diagnostic methods for Bsal detection, and possible alternative methods and feasible risk mitigation measures to ensure safe international and EU trade of salamanders and their products. Bsal was isolated and characterised in 2013 from a declining fire salamander ( Salamandra salamandra ) population in the Netherlands. Based on the available evidence, it is likely that Bsal is a sufficient cause for the death of S. salamandra both in the laboratory and in the wild. Despite small sample sizes, the available experimental evidence indicates that Bsal is associated with disease and death in individuals of 12 European and 3 Asian salamander species, and with high mortality rate outbreaks in kept salamanders. Bsal experimental infection was detected in individuals of at least one species pertaining to the families Salamandridae, Plethodontidae, Hynobiidae and Sirenidae. Movement bans constitute key risk mitigation measures to prevent pathogen spread into naïve areas and populations. The effectiveness of a movement ban is mainly dependent on the import volumes, possibility of Bsal to remain viable outside susceptible/tolerant species, and the capacity to limit illegal movements. Duplex real-time PCR can be used to detect Bsal DNA, but has not been fully validated. Quarantining salamanders, enacting legislation that requires testing of animals to demonstrate freedom from Bsal, before movement can take place, restricting salamander movements, tracking all traded species, hygienic procedures/biosecurity measures before and during movements, and increasing public awareness are relevant measures for ensuring safe intra-EU and international trade of salamanders., (© 2017 European Food Safety Authority. EFSA Journal published by John Wiley and Sons Ltd on behalf of European Food Safety Authority.)
- Published
- 2017
- Full Text
- View/download PDF
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