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424 results on '"Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN)"'

1. Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group

Author: Maël Doré, Keith Willmott, Boris Leroy, Nicolas Chazot, James Mallet, André V. L. Freitas, Jason P. W. Hall, Gerardo Lamas, Kanchon K. Dasmahapatra, Colin Fontaine, Marianne Elias, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Centre d'Ecologie et des Sciences de la COnservation (CESCO), Muséum national d'Histoire naturelle (MNHN)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), University of Florida [Gainesville] (UF), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Swedish University of Agricultural Sciences (SLU), Harvard University, Universidade Estadual de Campinas = University of Campinas (UNICAMP), Smithsonian Institution, Universidad Nacional Mayor de San Marcos (UNMSM), University of York [York, UK], Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Université Paul-Valéry - Montpellier 3 (UPVM)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Université de Montpellier (UM), FLMNH Museum Associates, Brazilian CNPq. Grant Numbers: 563332/2010-7, 303834/2015-3, French Ministry of Research (MENSR), Leverhulme Trust, Darwin Initiative, National Geographic Society. Grant Number: 5751-96, National Science Foundation. Grant Numbers: 0103746, 0639977, 0639861, 0847582, U.S. National Academy of Sciences, United States Agency for International Development, Human Frontier Science Program. Grant Number: RGP0014/2016, Fundação Amazônia Paraense de Amparo à Pesquisa. Grant Numbers: 2011/50225-3, 2012/50260-6, ANR-16-CE02-0012,CLEARWING,La transparence : origine physique, fonctions adaptatives et évolution chez les papillons transparents(2016), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Harvard University [Cambridge], Universidade Estadual de Campinas (UNICAMP), Université Paul-Valéry - Montpellier 3 (UPVM)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Subjects: human impacts, 0106 biological sciences, 0303 health sciences, Ecology, Müllerian mimicry, geographic rarity, 15. Life on land, 010603 evolutionary biology, 01 natural sciences, Human Footprint, [SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology, 03 medical and health sciences, Ithomiini butterflies, 13. Climate action, phylogenetic diversity, anthropogenic pressures, species richness, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Ecology, Evolution, Behavior and Systematics, biodiversity hotspots, 030304 developmental biology
Abstract: International audience; The biodiversity crisis has highlighted the need to assess and map biodiversity in order to prioritize conservation efforts. Clearwing butterflies (tribe Ithomiini) have been proposed as biological indicators for habitat quality in Neotropical forests, which contain the world's richest biological communities. Here, we provide maps of different facets of Ithomiini diversity across the Neotropics to identify areas of evolutionary and ecological importance for conservation and evaluate their overlap with current anthropogenic threats.Location: Neotropics.Methods: We ran species distribution models on a data set based on 28,986 georeferenced occurrences representing 388 ithomiine species to generate maps of geographic rarity, taxonomic, phylogenetic and Müllerian mimetic wing pattern diversity. We quantified and mapped the overlap of diversity hotspots with areas threatened by or providing refuge from current anthropogenic pressures.Results: The eastern slopes of the Andes formed the primary hotspot of taxonomic, phylogenetic and mimetic diversity, with secondary hotspots in Central America and the Atlantic Forest. Most diversity indices were strongly spatially correlated. Nevertheless, species-poor communities on the Pacific slopes of the Andes also sheltered some of the geographically rarest species. Overall, tropical montane forests that host high species and mimetic diversity as well as rare species and mimicry rings appeared particularly under threat.Main conclusions: Remote parts of the Upper Amazon may act as refuges against current anthropogenic pressures for a limited portion of Ithomiini diversity. Furthermore, it is likely that the current threat status may worsen with ongoing climate change and deforestation. In this context, the tropical Andes occupy a crucial position as the primary hotspot for multiple facets of biodiversity for ithomiine butterflies, as they do for angiosperms, tetrapods and other insect taxa. Our results support the role of ithomiine butterflies as a suitable flagship indicator group for Neotropical butterfly diversity and reinforce the position of the tropical Andes as a flagship region for biodiversity conservation in general, and insect and butterfly conservation in particular.
Published: 2021

2. Traits of a mussel transmissible cancer are reminiscent of a parasitic life style

Author: Burioli, E., Hammel, M., Bierne, N., Thomas, F., Houssin, M., Destoumieux-Garzón, D., Charrière, G., Interactions Hôtes-Pathogènes-Environnements (IHPE), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Perpignan Via Domitia (UPVD), Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), Centre de Recherches Ecologiques et Evolutives sur le Cancer (MIVEGEC-CREEC), Processus Écologiques et Évolutifs au sein des Communautés (PEEC), Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud]), LABÉO, Pôle d’analyses et de recherche de Normandie (LABÉO), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Université de Perpignan Via Domitia (UPVD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), and ANR-18-CE35-0009,TRANSCAN,ECOLOGIE ET EVOLUTION DES CANCERS TRANSMISSIBLES(2018)
Subjects: 0106 biological sciences, Cell biology, Hemocytes, Cell Survival, Mytilus edulis, Science, Diseases, [SDV.CAN]Life Sciences [q-bio]/Cancer, 010603 evolutionary biology, 01 natural sciences, Article, 03 medical and health sciences, Hemolymph, Neoplasms, Animals, Parasites, Seawater, 14. Life underwater, Cancer, Cell Proliferation, 030304 developmental biology, [SDV.EE]Life Sciences [q-bio]/Ecology, environment, 0303 health sciences, Multidisciplinary, Ecology, 3. Good health, Phenotype, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, Medicine
Abstract: Some cancers have evolved the ability to spread from host to host by transmission of cancerous cells. These rare biological entities can be considered parasites with a host-related genome. Still, we know little about their specific adaptation to a parasitic lifestyle. MtrBTN2 is one of the few lineages of transmissible cancers known in the animal kingdom. Reported worldwide, MtrBTN2 infects marine mussels. We isolated MtrBTN2 cells circulating in the hemolymph of cancerous mussels and investigated their phenotypic traits. We found that MtrBTN2 cells had remarkable survival capacities in seawater, much higher than normal hemocytes. With almost 100% cell survival over three days, they increase significantly their chances to infect neighboring hosts. MtrBTN2 also triggered an aggressive cancerous process: proliferation in mussels was ~ 17 times higher than normal hemocytes (mean doubling time of ~ 3 days), thereby favoring a rapid increase of intra-host population size. MtrBTN2 appears to induce host castration, thereby favoring resources re-allocation to the parasites and increasing the host carrying capacity. Altogether, our results highlight a series of traits of MtrBTN2 consistent with a marine parasitic lifestyle that may have contributed to the success of its persistence and dissemination in different mussel populations across the globe.
Published: 2021

3. From taxonomic to functional dark diversity: Exploring the causes of potential biodiversity and its implications for conservation

Author: Frédéric Ysnel, Simon Chollet, Lou Barbe, Vincent Jung, Lo iumls Morel, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Littoral, Environnement, Télédétection, Géomatique UMR 6554 (LETG), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Université d'Angers (UA)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Brest (UBO)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (IGARUN), Université de Nantes (UN)-Université de Nantes (UN), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES), Region Bretagne, Departement des Cotes d'Armor Region Bretagne, Departement d'Ille-et-Vilaine, Communaute de communes de Plouha-Lanvollon, Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Normandie Université (NU)-Normandie Université (NU)-Université d'Angers (UA)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Brest (UBO)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (IGARUN), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), and Université de Rennes (UR)
Subjects: passive rewilding, 0106 biological sciences, genetic structures, Functional features, ecological restoration, Biodiversity, Woodland, forest temporal continuity, 010603 evolutionary biology, 01 natural sciences, Conservation, spiders, Restoration ecology, taxonomic and functional dark diversity, Ecology, plants, 010604 marine biology & hydrobiology, respiratory system, 15. Life on land, Geography, Habitat, community assembly, sense organs, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, human activities, Diversity (business)
Abstract: Aims and context: Dark diversity is an emerging and promising concept proposed to estimate the recruitment potential of natural communities and guide conservation and restoration policies. It represents all the species that could be present in a community due to favourable environmental conditions, but are currently lacking. To date, experimental approaches only measured taxonomic dark diversity, mainly based on species coexistence, which relies partly on neutral processes. Thus, these approaches may fail to identify the biodiversity which is lacking for deterministic reasons, and can hence hardly bring out suitable restoration methods. Methods: Here, we propose a novel method to estimate dark diversity, which is based on more deterministic coexistence: the coexistence of functional features. We adapted the Beals co-occurrence index using functional groups, and we estimated functional dark diversity based on coexistence of functional groups. We then made use of functional dark diversity to address a persistent issue of restoration ecology: how does passive rewilding impact the ecological integrity of recovered communities? We compared spontaneous, secondary woodlands with ancient forests, in terms of taxonomic and functional dark diversity of vascular plants and spiders. Results: Our results indicated that functional dark diversity does not equate to taxonomic dark diversity. Considering plants, recent woodlands surprisingly harboured less functional dark diversity than ancient forests, while they had a very similar amount of taxonomic dark diversity. Concerning spiders, recent woodlands harboured a similar amount of functional dark diversity as ancient forests, but more taxonomic dark diversity. Also, the composition of functional dark diversity differed between forest types, shedding light on their past assembly processes and unveiling their potential for conservation and effective restoration. Synthesis: Functional dark diversity brings novel perspectives for ecological diagnostic and restoration. Combined to taxonomic dark diversity, it enables to identify easily the deterministic constrains which limit the re-assembly of ecological communities after land-use changes and to predict the realistic, possible establishments of functional features. Here, we showed that spontaneous woodlands can have very similar, sometimes even higher, ecological integrity than that of ancient forests, and hence may be valuable habitats to be conserved from an ecological perspective.
Published: 2021

4. An integrated closed system for fish-plankton aquaculture in Amazonian fresh water

Author: R. Dugué, Frank David, R. Ismiño, M. J. Darias, S. Gilles, H. Sánchez, Juan Antonio López Núñez, U. Römer, Dumont, B. (ed.), Bernués, A. (ed.), Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226, Instituto de Investigaciones de la Amazonía Peruana (IIAP), Laboratoire Mixte International – Evolution et Domestication de l'Ichtyofaune Amazonienne (LMI - EDIA), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), École nationale supérieure agronomique de Toulouse [ENSAT], Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), École nationale supérieure agronomique de Toulouse (ENSAT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)
Subjects: PHYTOPLANCTON, Nannochloris, Rotifera, Sewage, FONCTIONNEMENT DE L'ECOSYSTEME, Fresh Water, Aquaculture, Chlorella, Integrated multi-trophic aquaculture, POISSON D'EAU DOUCE, MESH: Biomass, RECYCLAGE DES DECHETS, MESH: Animals, MESH: Ecosystem, Biomass, Animal Husbandry, MESH: Aquaculture, Catfishes, 0303 health sciences, biology, Ecology, MESH: Animal Husbandry, 04 agricultural and veterinary sciences, Cichlids, Closed fish-plankton system, Plankton, Cichlidae, POISSON CHAT, 6. Clean water, Animal culture, Sustainability, MESH: Fresh Water, PRODUCTIVITE, Pseudoplatystoma punctifer, [SDV.SA.ZOO]Life Sciences [q-bio]/Agricultural sciences/Zootechny, SF1-1100, Chlorella Cichlidae, MESH: Rotifera, 03 medical and health sciences, [SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems, AZOTE, Aquaculture engineering, Animals, Ecosystem, 030304 developmental biology, MESH: Catfishes, business.industry, AQUACULTURE, biology.organism_classification, Satanoperca jurupari, Fishery, Phytoplankton, 040102 fisheries, RELATION TROPHIQUE, 0401 agriculture, forestry, and fisheries, Environmental science, Animal Science and Zoology, business, MESH: Cichlids, METHODOLOGIE, MESH: Phytoplankton
Abstract: International audience; A prototype of an integrated closed system for fish-plankton aquaculture was developed in Iquitos (Peruvian Amazonia) in order to cultivate the Tiger Catfish, Pseudoplatystoma punctifer (Castelnau, 1855). This freshwater recirculating system consisted of two linked sewage tanks with an intensive rearing unit (a cage) for P. punctifer placed in the first, and with a fish-plankton trophic chain replacing the filters commonly used in clear water closed systems. Detritivorous and zooplanktivorous fishes (Loricariidae and Cichlidae), maintained without external feeding in the sewage volume, mineralized organic matter and permitted the stabilization of the phytoplankton biomass. Water exchange and organic waste discharge were not necessary. In this paper we describe the processes undertaken to equilibrate this ecosystem: first the elimination of an un-adapted spiny alga, Golenkinia sp., whose proliferation was favored by the presence of a small rotifer, Trichocerca sp., and second the control of this rotifer proliferation via the introduction of two cichlid species, Acaronia nassa Heckel, 1840 and Satanoperca jurupari Heckel, 1840, in the sewage part. This favored some development of the green algae Nannochloris sp. and Chlorella sp. At that time we took the opportunity to begin a 3-month rearing test of P. punctifer. The mean specific growth rate and feed conversion ratio (FCR) of P. punctifer were 1.43 and 1.27, respectively, and the global FCR, including fish in the sewage part, was 1.08. This system has proven to be suitable for growing P. punctifer juveniles out to adult, and provides several practical advantages compared with traditional recirculating clear water systems, which use a combination of mechanical and biological filters and require periodic waste removal, leading to water and organic matter losses.
Published: 2014

5. Detailed assessment of the reported economic costs of invasive species in Australia

Author: Phillip J. Haubrock, Franck Courchamp, Phillip Cassey, Lindell Andrews, Andrew J. Hoskins, Boris Leroy, Christophe Diagne, Corey J. A. Bradshaw, Andy Sheppard, Brad Page, Ross N. Cuthbert, Université Paris-Saclay, Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), ARC Center Excellence Australian Biodiversity and Heritage, University of New South Wales (UNSW), Flinders University [Adelaide, Australia], Commonwealth Scientific and Industrial Research Organisation [Canberra] (CSIRO), University of South Bohemia, Queen's University [Belfast] (QUB), Government of South Australia, University of Adelaide, Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)
Subjects: 0106 biological sciences, InvaCost, QH301-705.5, [SDV]Life Sciences [q-bio], Oceania, Plant Science, Ecosystem management expenditure, Aquatic Science, 010603 evolutionary biology, 01 natural sciences, Invasive species, monetary impacts, Economic cost, Biology (General), health care economics and organizations, Ecology, Evolution, Behavior and Systematics, socio-economic damage, Ecology, Agroforestry, 010604 marine biology & hydrobiology, Ecological Modeling, non-native species, 15. Life on land, Geography, Insect Science, [SDE]Environmental Sciences, Animal Science and Zoology, socioeconomic damage
Abstract: The legacy of deliberate and accidental introductions of invasive alien species to Australia has had a hefty economic toll, yet quantifying the magnitude of the costs associated with direct loss and damage, as well as for management interventions, remains elusive. This is because the reliability of cost estimates and under-sampling have not been determined. We provide the first detailed analysis of the reported costs associated with invasive species to the Australian economy since the 1960s, based on the recently published InvaCost database and supplementary information, for a total of 2078 unique cost entries. Since the 1960s, Australia has spent or incurred losses totalling at least US$298.58 billion (2017 value) or AU$389.59 billion (2017 average exchange rate) from invasive species. However, this is an underestimate given that costs rise as the number of estimates increases following a power law. There was an average 1.8–6.3-fold increase in the total costs per decade since the 1970s to the present, producing estimated costs of US$6.09–57.91 billion year-1 (all costs combined) or US$225.31 million–6.84 billion year-1 (observed, highly reliable costs only). Costs arising from plant species were the highest among kingdoms (US$151.68 billion), although most of the costs were not attributable to single species. Of the identified weedy species, the costliest were annual ryegrass (Lolium rigidum), parthenium (Parthenium hysterophorus) and ragwort (Senecio jacobaea). The four costliest classes were mammals (US$48.63 billion), insects (US$11.95 billion), eudicots (US$4.10 billion) and monocots (US$1.92 billion). The three costliest species were all animals – cats (Felis catus), rabbits (Oryctolagus cuniculus) and red imported fire ants (Solenopsis invicta). Each State/Territory had a different suite of major costs by species, but with most (3–62%) costs derived from one to three species per political unit. Most (61%) of the reported costs applied to multiple environments and 73% of the total pertained to direct damage or loss compared to management costs only, with both of these findings reflecting the availability of data. Rising incursions of invasive species will continue to have substantial costs for the Australian economy, but with better investment, standardised assessments and reporting and coordinated interventions (including eradications), some of these costs could be substantially reduced.
Published: 2021

6. Les coûts économiques des invasions biologiques en Afrique : une menace croissante mais négligée ?

Author: Franck Courchamp, Justice Tambo, Gauthier Dobigny, Elena Angulo, Ana Novoa, Cheikh Abdou Khadre Mbacké Dia, Christophe Diagne, Desika Moodley, Tasnime Adamjy, Boris Leroy, Ahmed Taheri, Anna J. Turbelin, Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Department of Invasion Ecology, Institute of Botany, Czech Academy of Sciences [Prague] (CAS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Ecole Polytechnique d'Abomey Calavi (EPAC), University of Abomey Calavi (UAC), Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD), Département de Biologie Animale, Université Chouaib Doukkali (UCD), Centre for Agricultural Bioscience International (CABI Europe Switzerland), The authors acknowledge the French National Research Agency (ANR-14-CE02-0021) and the BNP-Paribas Foundation Climate Initiative for funding the InvaCosts project which allowed the construction of the InvaCosts database. This work was initiated following a workshop funded by the AXA Research Fund Chair of Invasion Biology and is part of the AlienScenario project funded by BiodivERsA and Belmont-Forum call 2018 on biodiversity scenarios. AN and DM were supported by the Czech Science Foundation (project no. 19–13142S, and EXPRO no. 19–28807X) and the Czech Academy of Sciences (long-term research development project RVO 67985939). EA contract comes from the AXA Research Fund Chair of Invasion Biology of University Paris Saclay. JT was supported by CABI with core financial support from its member countries and lead agencies (see: https://www.cabi.org/what-we-do/how-we-work/cabi-donors-and-partners). CD was funded by the BiodivERsA-Belmont Forum Project 'Alien Scenarios' (BMBF/PT DLR 01LC1807C)., ANR-14-CE02-0021,InvaCosts,Insectes envahissants et leurs couts pour la biodiversité, l'économie et la santé humaine(2014), Institute of Botany of the Czech Academy of Sciences (IB / CAS), Centre for Agriculture and Biosciences International UK (CABI UK), The authors acknowledge the French National Research Agency (ANR-14-CE02-0021) and the BNP-Paribas Foundation Climate Initiative for funding the Invacost project which allowed the construction of the InvaCost database. This work was initiated following a workshop funded by the AXA Research Fund Chair of Invasion Biology and is part of the AlienScenario project funded by BiodivERsA and Belmont-Forum call 2018 on biodiversity scenarios. AN and DM were supported by the Czech Science Foundation (project no. 19–13142S, and EXPRO no. 19–28807X) and the Czech Academy of Sciences (long-term research development project RVO 67985939). EA contract comes from the AXA Research Fund Chair of Invasion Biology of University Paris Saclay. JT was supported by CABI with core financial support from its member countries and lead agencies (see: https://www.cabi.org/what-we-do/how-we-work/cabi-donors-and-partners/). CD was funded by the BiodivERsA-Belmont Forum Project 'Alien Scenarios' (BMBF/PT DLR 01LC1807C)., Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), and Université d’Abomey-Calavi = University of Abomey Calavi (UAC)
Subjects: 0106 biological sciences, ሥነ-ሕይወታዊ ወረራዎች, Natural resource economics, ግብርና, ruuri ndundat yi, [SDV]Life Sciences [q-bio], biological invasions, Plant Science, 010501 environmental sciences, ኢኮኖሚያዊ ወጪዎች, 01 natural sciences, Afrika, economic costs, InvaCosts, Afrique, yàqu-yàyu, agricultura, Economic cost, coûts économiques, gestion, labarali, Economic impact analysis, Biology (General), bestuur, Alien species, ukubhekana, agriculture, 2. Zero hunger, landbou, አፍሪካ, Ecology, gestión, Ecological Modeling, ቁጥጥር፡፡, costes económicos, njeexital ci koom-koom, Geography, [SDE]Environmental Sciences, ኢንቫኮስት, Ɲanamaya finkuraw cyarili, damage, management, InvaCost, QH301-705.5, Farafina, Developing country, Aquatic Science, 010603 evolutionary biology, invasions biologiques, daños, mbay, kɔlɔlɔ, skade, pertes et dommages, umonakalo, Natural ecosystem, indringer spesies, Ecology, Evolution, Behavior and Systematics, izindleko zezomnotho, 0105 earth and related environmental sciences, África, musaka, 15. Life on land, ጉዳት, Afrig, sɛnɛ, invasiones biológicas, 13. Climate action, ezolimo, izimila nezilwanyana zokufika, Insect Science, Africa, saytu gi, Animal Science and Zoology, ekonomiese koste
Abstract: International audience; Biological invasions can dramatically impact natural ecosystems and human societies. However, although knowledge of the economic impacts of biological invasions provides crucial insights for efficient management and policy, reliable syntheses are still lacking. This is particularly true for low income countries where economic resources are insufficient to control the effects of invasions. In this study, we relied on the recently developed "InvaCost" database – the most comprehensive repository on the monetised impacts of invasive alien species worldwide – to produce the first synthesis of economic costs of biological invasions on the African continent. We found that the reported costs of invasions ranged between US$ 18.2 billion and US$ 78.9 billion between 1970 and 2020. This represents a massive, yet highly underestimated economic burden for African countries. More alarmingly, these costs are exponentially increasing over time, without any signs of abatement in the near future. The reported costs were mostly driven by damage caused by invaders rather than expenses incurred for management. This trend was highly skewed towards a few regions (i.e. Southern and Eastern Africa) and activity sectors (i.e. agriculture) and incurred by a small number of invasive taxa (i.e. mainly three insect pests: Chilo partellus , Tuta absoluta , Spodoptera frugiperda ). We also highlight crucial, large gaps in current knowledge on the economic costs of invasions that still need to be bridged with more widespread research effort and management actions across the continent. Finally, our study provides support for developing and implementing preventive measures as well as integrated post-invasion management actions at both national and regional levels. Considering the complex societal and economic realities in African countries, the currently neglected problem of biological invasions should become a priority for sustainable development.; Les invasions biologiques peuvent avoir un impact considérable sur les écosystèmes naturels et les sociétés humaines. Cependant, bien que les connaissances sur les impacts économiques des invasions biologiques fournissent des informations cruciales en termes de gestion, des synthèses récentes et fiables font encore défaut. Cela est particulièrement vrai pour les pays à faible revenu où les ressources économiques sont insuffisantes pour contrôler les effets des invasions. Dans cette étude, nous nous sommes appuyés sur la base de données "InvaCost" développée récemment - le référentiel le plus complet sur les impacts monétaires des espèces exotiques envahissantes dans le monde - pour produire la première synthèse des coûts économiques des invasions biologiques sur le continent africain. Nous avons constaté que les coûts déclarés des invasions varient entre 18,2 milliards de dollars américains (USD) et 78,9 milliards USD entre 1970 et 2020. Cela représente une charge économique énorme, mais encore très sous-estimée, pour les pays africains. Plus alarmant encore, ces coûts augmentent de façon exponentielle au fil du temps, sans aucun signe de réduction pour les années à venir. Les coûts reportés étaient principalement (i) dus aux dommages causés par les envahisseurs plutôt qu’aux dépenses engagées pour lutter contre leurs invasions, (ii) fortement biaisés vers quelques régions (Afrique australe et orientale) et secteurs d’activité (agriculture) et (iii) associés à un nombre restreint de taxons envahissants (essentiellement trois insectes ravageurs: Chilo partellus, Tuta absoluta, Spodoptera frugiperda). Notre étude met également en lumière de cruciales lacunes dans les connaissances actuelles sur les coûts économiques des invasions qui doivent encore être comblées par des efforts de recherche et des actions de gestion plus importants et étendus à travers le continent. Enfin, notre travail souligne la nécessité de l’élaboration et la mise en œuvre de mesures préventives pour empêcher l’introduction des espèces envahissantes, ainsi que l’intégration des actions de gestion aux niveaux national et régional. Compte tenu des réalités sociétales et économiques complexes des pays africains, le problème actuellement négligé des invasions biologiques devrait être une priorité pour le développement durable.
Published: 2021

7. Harnessing the potential for otolith microchemistry to foster the conservation of Amazonian fishes

Author: Luciana A. Pereira, Karin E. Limburg, Leandro Castello, Fabrice Duponchelle, Marília Hauser, Theodore W. Hermann, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD), Virginia Tech [Blacksburg], and Universidade Federal de Rondônia [Brésil] (UNIR)
Subjects: 0106 biological sciences, [SDE.MCG]Environmental Sciences/Global Changes, Amazonian, fish migration, Aquatic Science, microchemistry, Research initiative, 010603 evolutionary biology, 01 natural sciences, otolith, medicine, 14. Life underwater, freshwater, Nature and Landscape Conservation, Otolith, Fish migration, threats, Ecology, research initiative, 010604 marine biology & hydrobiology, Microchemistry, conservation, 15. Life on land, Fishery, Geography, medicine.anatomical_structure, 13. Climate action, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: WOS:000632691700001; Freshwater environments host roughly half of the world’s fish diversity, much of which is concentrated in large, tropical river systems such as the Amazon. Fishes are critical to ecosystem functioning in the Amazon River basin but face increasing human threats. The basic biology of these species, and particularly migratory behaviour, remains poorly studied, in part owing to the difficulty associated with conducting tagging studies in remote tropical regions. Otolith microchemistry can circumvent logistical issues and is an increasingly important tool for studying fish life histories. However, this approach is still new in the Amazon, and its potential and limitations to inform fish conservation strategies remain unclear. Here, otolith microchemistry studies in the Amazon are reviewed, highlighting current possibilities, and several key factors that limit its use as a conservation tool in the Amazon are discussed. These include the dearth of spatiotemporal elemental data, poor understanding of environment–fish–otolith pathways, and insufficient funding, facilities, and equipment. A research initiative is proposed to harness the potential of this technique to support conservation in the Amazon. Key aspects of the proposal include recommendations for internal and external funding, which are critical to acquiring and maintaining technical staff, cutting-edge equipment, and facilities, as well as fostering regular scientific meetings and working groups. Meetings can facilitate a systematic approach to investigating environment–otolith pathways, broadening the chemical baseline for most Amazonian tributaries, and exploring potential valuable elements. These outcomes are urgently needed to conserve biodiversity and ecosystem functioning in the Amazon, especially given threats such as widespread hydroelectric damming. The initiative proposed here could make otolith microchemistry an important, cost-effective tool to inform and foster conservation in the Amazon, and act as a template for other imperilled tropical river basins, such as the Mekong and the Congo.
Published: 2021

8. Non-indigenous species in marine and brackish waters along the Normandy coast

Author: Alexandrine Baffreau, Anne-Marie Rusig, Jean-Claude Dauvin, Aurore Raoux, Jean-Philippe Pezy, Isabelle Mussio, Morphodynamique Continentale et Côtière (M2C), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Centre National de la Recherche Scientifique (CNRS), Groupe d'Etude des Milieux Estuariens et Littoraux de Normandie (GEMEL-Normandie), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), and Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Subjects: English Channel, 010304 chemical physics, Ecology, Brackish water, [SDV]Life Sciences [q-bio], 0206 medical engineering, 02 engineering and technology, 020601 biomedical engineering, 01 natural sciences, Indigenous, invasive species, inventory, introduced species, Fishery, Geography, 0103 physical sciences, first record, 14. Life underwater, Ecology, Evolution, Behavior and Systematics
Abstract: (IF 1.67; Q2); International audience; An overview is presented of the Non-Indigenous Species (NIS) of algae and invertebrates recorded in the marine and brackish coastal waters of Normandy in France. Out of the 152 NIS found, 86 have been introduced through shipping (ballast waters and fouling) and 66 through aquaculture activities. A total of 95 NIS are linked to a Pacific origin and 32 come from the northwestern region of the Atlantic. Among the 152 NIS identified, only nine show an invasive demography in Normandy waters. The first introductions occurred in the middle of the 19 th century and became frequent by the beginning of the 20 th century. However, over 50% of the NIS so far recorded were found only during the three last decades.
Published: 2021

9. Comparison of approaches for incorporating depredation on fisheries catches into Ecopath

Author: Sophie Gourguet, Bertrand Le Gallic, Martin P. Marzloff, Pierre-Yves Hernvann, Catherine M. Bulman, Johanna Faure, Paul Tixier, Verena M. Trenkel, Clara Péron, Lyndsay Clavareau, Nicolas Gasco, Ifremer, BP 70, 29280 Plouzané, France, Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), IFREMER EMH Nantes [France], CSIRO Agriculture and Food (CSIRO), Aménagement des Usages des Ressources et des Espaces marins et littoraux - Centre de droit et d'économie de la mer (AMURE), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Deakin University, Burwood, Australia, and Deakin University [Burwood]
Subjects: 0106 biological sciences, Ecology, 010604 marine biology & hydrobiology, Fishing, Aquatic Science, Oceanography, Fish stock, 010603 evolutionary biology, 01 natural sciences, Predation, Fishery, Geography, Ecosystem model, Marine ecosystem, 14. Life underwater, Fisheries management, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Population dynamics of fisheries, Ecology, Evolution, Behavior and Systematics, Trophic level
Abstract: Ecosystem-based approaches are increasingly used in fisheries management to account for the direct trophic impacts of fish population harvesting. However, fisheries can also indirectly alter ecosystem structure and functioning, for instance via the provision of new feeding opportunities to marine predators. For instance, marine depredation, where predators feed on fishery catches on fishing gear, is a behaviour developed by many marine species globally. This behaviour can modify both the ecological role of predators and fisheries performance. Yet, these ecosystem-wide effects of depredation are rarely considered holistically. In this study, we explored different ways of incorporating depredation into an Ecopath trophic model. We assessed, through a subantarctic case study, how three alternative model structures can account for depredation effects on fishery catches, predator and non-commercial prey populations, as well as target fish stocks. While none adequately addresses all facets of depredation, the alternative models can to some extent capture how depredation can lead to increased fishing pressure on stocks. As structural specificities of Ecopath prevented us from representing other depredation effects such as provisioning effects for predator populations, we conclude this study with a set of guidance to effectively capture the complex effects of depredation in marine ecosystems and fisheries models.
Published: 2020

10. Macrozooplankton and micronekton diversity and associated carbon vertical patterns and fluxes under distinct productive conditions around the Kerguelen Islands

Author: Natasha Henschke, Boris Espinasse, Adrien Berne, Cédric Cotté, Anne Lebourges-Dhaussy, A. Ariza, Brian P. V. Hunt, Clara Péron, Anna Conchon, Coco Koedooder, Yves Cherel, Evgeny A. Pakhomov, Gildas Roudaut, Jérémie Habasque, Lloyd Izard, Processus et interactions de fine échelle océanique (PROTEO), Laboratoire d'Océanographie et du Climat : Expérimentations et Approches Numériques (LOCEAN), Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut de Recherche pour le Développement (IRD)-Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut de Recherche pour le Développement (IRD)-Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU), MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS)-Université de Brest (UBO), The Arctic University of Norway (UiT), Department of Earth, Ocean and Atmospheric Sciences [Vancouver] (UBC EOAS), University of British Columbia (UBC), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Observatoire océanologique de Banyuls (OOB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Centre d'Études Biologiques de Chizé - UMR 7372 (CEBC), Université de La Rochelle (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), INSU-CNRS LEFE/CYBER ('Les enveloppes fluides et l'environnement' –'Cycles biogéochimiques, environnement et ressources'), Cnes OSTST Tosca project LAECOS, ANR-17-CE01-0013,MOBYDICK,Biodiversité des Ecosystèmes Marins et Dynamique du Carbone dans le secteur de Kerguelen : approche intégrée(2017), European Project: 692173,H2020-EU.3.6.,H2020-INT-INCO-2015,MESOPP(2016), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut Pierre-Simon-Laplace (IPSL (FR_636)), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-École polytechnique (X)-Centre National d'Études Spatiales [Toulouse] (CNES)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), The Arctic University of Norway [Tromsø, Norway] (UiT), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD), and Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, Biogeochemical cycle, Macrozooplankton, 010504 meteorology & atmospheric sciences, Mesopelagic zone, Spatio-temporal variability, Aquatic Science, Oceanography, 01 natural sciences, Active carbon flux, Deep scattering layer, 14. Life underwater, Themisto gaudichaudii, Micronekton, Southern Ocean, Diel vertical migration, Ecology, Evolution, Behavior and Systematics, 0105 earth and related environmental sciences, Biomass (ecology), geography, Kerguelen Plateau, Plateau, geography.geographical_feature_category, biology, Vertical patterns, 010604 marine biology & hydrobiology, Biological pump, Scattering layers, biology.organism_classification, 13. Climate action, [SDE]Environmental Sciences, Environmental science
Abstract: International audience; Mesopelagic communities are characterized by a large biomass of diverse macrozooplankton and micronekton (MM) performing diel vertical migration (DVM) connecting the surface to the deeper ocean and contributing to biogeochemical fluxes. In the Southern Ocean, a prominent High Nutrient Low Chlorophyll (HNLC) and low carbon export region, the contribution of MM to the vertical carbon flux of the biological pump remains largely unknown. Furthermore, few studies have investigated MM communities and vertical flux in naturally iron fertilized areas associated with shallow bathymetry. In this study, we assessed the MM community diversity, abundance and biomass in the Kerguelen Island region, including two stations in the HNLC region upstream of the islands, and two stations in naturally iron fertilized areas, one on the Plateau, and one downstream of the Plateau. The MM community was examined using a combination of trawl sampling and acoustic measurements at 18 and 38 kHz from the surface to 800 m. A conspicuous three-layer vertical system was observed in all areas - a shallow scattering layer, SSL, between 10 and 200 m; mid-depth scattering layer, MSL, between 200 and 500 m; deep scattering layer, DSL, between 500 and 800 m - but communities differing among stations. While salps (Salpa thompsoni) dominated the biomass at the productive Kerguelen Plateau and the downstream station, they were scarce in the HNLC upstream area. In addition, crustaceans (mainly Euphausia vallentini and Themisto gaudichaudii) were particularly abundant over the Plateau, representing a large, although varying, carbon stock in the 0–500 m water layer. Mesopelagic fish were prominent below 400 m where they formed permanent or migrant layers accounting for the main source of carbon biomass. Through these spatial and temporal sources of variability, complex patterns of the MM vertical distribution and associated carbon content were identified. The total carbon flux mediated by migratory myctophids at the four stations was quantified. While this flux was likely underestimated, this study identified the main components and mechanisms of active carbon export in the region and how they are modulated by complex topography and land mass effects.
Published: 2022

11. Mangrove microbiota along the urban-to-rural gradient of the Cayenne estuary (French Guiana, South America): Drivers and potential bioindicators

Author: Guillaume Dirberg, Tony Robinet, Lars-Eric Heimbürger-Boavida, Ronan Jézéquel, Amonda El Houssainy, Maud Fiard, Romain Walcker, Cécile Militon, Cédric Hubas, Léa Sylvi, Isabelle Bihannic, Franck Gilbert, Philippe Cuny, Emma Michaud, Dominique Lamy, Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Station de Biologie Marine de Concarneau, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN), Centre de documentation de recherche et d'expérimentations sur les pollutions accidentelles des eaux (Cedre), Cedre, Institut d'écologie et des sciences de l'environnement de Paris (iEES Paris ), Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), ANR-10-LABX-0025,CEBA,CEnter of the study of Biodiversity in Amazonia(2010), Aix-Marseille Université - AMU (FRANCE), Centre de Documentation, de Recherche et d'Expérimentations sur les pollutions accidentelles des eaux - CEDRE (FRANCE), Centre National de la Recherche Scientifique - CNRS (FRANCE), Institut Français de Recherche pour l'Exploitation de la MER - IFREMER (FRANCE), Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE), Institut national de recherche pour l'agriculture, l'alimentation et l'environnement - INRAE (FRANCE), Institut de Recherche pour le Développement - IRD (FRANCE), Université Paris 1 Panthéon-Sorbonne (FRANCE), Sorbonne Université (FRANCE), Université de Bretagne Occidentale - UBO (FRANCE), Université Paris Est Créteil Val de Marne - UPEC (FRANCE), Université Toulouse III - Paul Sabatier - UT3 (FRANCE), Université de Caen Basse-Normandie (FRANCE), Museum National d'Histoire Naturelle - MNHN (FRANCE), Université de Toulon - UTLN (FRANCE), Université des Antilles et de la Guyane (FRANCE), Université de Paris - U-Paris (FRANCE), Institut d'Ecologie et des Sciences de l'Environnement de Paris - IEES (Paris, France), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Muséum national d'Histoire naturelle (MNHN), Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, and Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP)
Subjects: Geologic Sediments, Environmental Engineering, [SDE.MCG]Environmental Sciences/Global Changes, Biodiversité et Ecologie, 03 medical and health sciences, Dieldrin, chemistry.chemical_compound, Estuarine mangrove sediments, PAHs contamination, Humans, Environmental Chemistry, Organic matter, 14. Life underwater, Waste Management and Disposal, 030304 developmental biology, chemistry.chemical_classification, Ecologie, Environnement, 0303 health sciences, geography, geography.geographical_feature_category, Environmental Biomarkers, biology, Planctomycetes, 030306 microbiology, Ecology, Anthropogenic Effects, Microbiota, Organochlorine contaminants, Estuary, 15. Life on land, biology.organism_classification, [SDE.ES]Environmental Sciences/Environmental and Society, Pollution, 6. Clean water, French Guiana, chemistry, 13. Climate action, Wetlands, Low organic matter enrichment, Desulfobacteraceae, Environmental science, Proteobacteria, Mangrove, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Estuaries, Bioindicator, Acidobacteria
Abstract: International audience; The microbial communities inhabiting the Atlantic-East Pacific (AEP) mangroves have been poorly studied, and mostly comprise chronically polluted mangroves. In this study, we characterized changes in the structure and diversity of microbial communities of mangroves along the urban-to-rural gradient of the Cayenne estuary (French Guiana, South America) that experience low human impact. The microbial communities were assigned into 50 phyla. Proteobacteria, Chloroflexi, Acidobacteria, Bacteroidetes, and Planctomycetes were the most abundant taxa. The environmental determinants found to significantly correlated to the microbial communities at these mangroves were granulometry, dieldrin concentration, pH, and total carbon (TC) content. Furthermore, a precise analysis of the sediment highlights the existence of three types of anthropogenic pressure among the stations: (i) organic matter (OM) enrichment due to the proximity to the city and its wastewater treatment plant, (ii) dieldrin contamination, and (iii) naphthalene contamination. These forms of weak anthropogenic pressure seemed to impact the bacterial population size and microbial assemblages. A decrease in Bathyarchaeota, “Candidatus Nitrosopumilus”, and Nitrospira genera was observed in mangroves subjected to OM enrichment. Mangroves polluted with organic contaminants were enriched in Desulfobacteraceae, Desulfarculaceae, and Acanthopleuribacteraceae (with dieldrin or polychlorobiphenyl contamination), and Chitinophagaceae and Geobacteraceae (with naphthalene contamination). These findings provide insights into the main environmental factors shaping microbial communities of mangroves in the AEP that experience low human impact and allow for the identification of several potential microbial bioindicators of weak anthropogenic pressure.
Published: 2022

12. Knowledge gaps in economic costs of invasive alien fish worldwide

Author: Andrew M. Kramer, Melina Kourantidou, Chunlong Liu, Rodolphe E. Gozlan, Christophe Diagne, Anna J. Turbelin, Franck Courchamp, Boris Leroy, Camille Bernery, Ross N. Cuthbert, Phillip J. Haubrock, Laura N. H. Verbrugge, Forschungsinstitut Senckenberg, Université Paris-Saclay, Helmholtz Centre for Ocean Research Kiel, Free University of Berlin, Woods Hole Oceanographic Institution, UMR7095, University of South Florida, Water and Environmental Eng., Université de Montpellier, Department of Built Environment, Aalto-yliopisto, Aalto University, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Helsinki Institute of Sustainability Science (HELSUS), Department of Forest Sciences, Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226, and Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE)
Subjects: 0106 biological sciences, InvaCost, Environmental Engineering, Resource (biology), Total cost, [SDV]Life Sciences [q-bio], Fisheries, Non-native species, Social Welfare, Alien, Biodiversity conservation, 010603 evolutionary biology, 01 natural sciences, Marine and freshwater, Invasive species, Economic cost, Environmental Chemistry, Animals, Humans, SDG 14 - Life Below Water, 14. Life underwater, Economic impact analysis, Socioeconomics, Waste Management and Disposal, Socioeconomic status, health care economics and organizations, Ecosystem, ComputingMilieux_MISCELLANEOUS, 1172 Environmental sciences, SDG 15 - Life on Land, 010604 marine biology & hydrobiology, Fishes, Pollution, Europe, Geography, [SDE]Environmental Sciences, Introduced Species, Socio-economic damages
Abstract: Funding Information: The authors acknowledge the very helpful input from the anonymous reviewers. Further, the authors acknowledge the French National Research Agency (ANR-14-CE02-0021) and the BNP-Paribas Foundation Climate Initiative for funding the Inva Cost project that allowed the construction of the InvaCost database. The present work was conducted following a workshop funded by the AXA Research Fund Chair of Invasion Biology and is part of the AlienScenario project funded by BiodivERsA and Belmont-Forum call 2018 on biodiversity scenarios. RNC is funded by a Research Fellowship from the Alexander von Humboldt Foundation. CD is funded by the BiodivERsA-Belmont Forum Project ?Alien Scenarios? (BMBF/PT DLR 01LC1807C). Funding Information: The authors acknowledge the very helpful input from the anonymous reviewers. Further, the authors acknowledge the French National Research Agency (ANR-14-CE02-0021) and the BNP-Paribas Foundation Climate Initiative for funding the Inva Cost project that allowed the construction of the InvaCost database. The present work was conducted following a workshop funded by the AXA Research Fund Chair of Invasion Biology and is part of the AlienScenario project funded by BiodivERsA and Belmont-Forum call 2018 on biodiversity scenarios. RNC is funded by a Research Fellowship from the Alexander von Humboldt Foundation . CD is funded by the BiodivERsA-Belmont Forum Project “Alien Scenarios” (BMBF/PT DLR 01LC1807C). Publisher Copyright: © 2021 Elsevier B.V. Invasive alien fishes have had pernicious ecological and economic impacts on both aquatic ecosystems and human societies. However, a comprehensive and collective assessment of their monetary costs is still lacking. In this study, we collected and reviewed reported data on the economic impacts of invasive alien fishes using InvaCost, the most comprehensive global database of invasion costs. We analysed how total (i.e. both observed and potential/predicted) and observed (i.e. empirically incurred only) costs of fish invasions are distributed geographically and temporally and assessed which socioeconomic sectors are most affected. Fish invasions have potentially caused the economic loss of at least US$37.08 billion (US2017 value) globally, from just 27 reported species. North America reported the highest costs (>85% of the total economic loss), followed by Europe, Oceania and Asia, with no costs yet reported from Africa or South America. Only 6.6% of the total reported costs were from invasive alien marine fish.The costs that were observed amounted to US$2.28 billion (6.1% of total costs), indicating that the costs of damage caused by invasive alien fishes are often extrapolated and/or difficult to quantify. Most of the observed costs were related to damage and resource losses (89%). Observed costs mainly affected public and social welfare (63%), with the remainder borne by fisheries, authorities and stakeholders through management actions, environmental, and mixed sectors. Total costs related to fish invasions have increased significantly over time, from
Published: 2022

13. Climate change influences chlorophylls and bacteriochlorophylls metabolism in hypersaline microbial mat

Author: M.A. Perdrau, Cédric Hubas, C. Mazière, M. Bodo, Christine Dupuy, Robert Duran, Cristiana Cravo-Laureau, LIttoral ENvironnement et Sociétés - UMRi 7266 (LIENSs), Université de La Rochelle (ULR)-Centre National de la Recherche Scientifique (CNRS), Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM), Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Muséum national d'Histoire naturelle (MNHN), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Station de Biologie Marine de Concarneau, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN), LIttoral ENvironnement et Sociétés (LIENSs), La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS), Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Subjects: 0106 biological sciences, Chlorophyll, Chlorophyll a, Environmental Engineering, Climate Change, [SDE.MCG]Environmental Sciences/Global Changes, Chlorosome, 01 natural sciences, Hypersaline microbial mats, 03 medical and health sciences, chemistry.chemical_compound, Phototrophic communities, Environmental Chemistry, Humans, Seawater, Microbial mat, Waste Management and Disposal, Bacteriochlorophylls, 030304 developmental biology, 0303 health sciences, Phototroph, Chlorophyll derivatives, 010604 marine biology & hydrobiology, Chlorophyll A, Ocean acidification, Hydrogen-Ion Concentration, Pollution, Anoxygenic photosynthesis, Mesocosms, chemistry, 13. Climate action, Environmental chemistry, [SDE]Environmental Sciences, Bacteriochlorophyll, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: International audience; This study aimed to determine the effect of the climatic change on the phototrophic communities of hypersaline microbial mats. Ocean acidification and warming were simulated alone and together on microbial mats placed into mesocosms. As expected, the temperature in the warming treatments increased by 4 °C from the initial temperature. Surprisingly, no significance difference was observed between the water pH of the different treatments despite of a decrease of 0.4 unit pH in the water reserves of acidification treatments. The salinity increased on the warming treatments and the dissolved oxygen concentration increased and was higher on the acidification treatments. A total of 37 pigments were identified belonging to chlorophylls, carotenes and xanthophylls families. The higher abundance of unknown chlorophyll molecules called chlorophyll derivatives was observed in the acidification alone treatment with a decrease in chlorophyll a abundance. This change in pigmentary composition was accompanied by a higher production of bound extracellular carbohydrates but didn't affect the photosynthetic efficiency of the microbial mats. A careful analysis of the absorption properties of these molecules indicated that these chlorophyll derivatives were likely bacteriochlorophyll c contained in the chlorosomes of green anoxygenic phototroph bacteria. Two hypotheses can be drawn from these results: 1/ the phototrophic communities of the microbial mats were modified under acidification treatment leading to a higher relative abundance of green anoxygenic bacteria, or 2/ the highest availability of CO2 in the environment has led to a shift in the metabolism of green anoxygenic bacteria being more competitive than other phototrophs.
Published: 2022

14. Climate change in the Bay of Biscay: Changes in spatial biodiversity patterns could be driven by the arrivals of southern species

Author: M. Le Marchand, Camille Albouy, Nathalie Niquil, F. Le Loc'h, Tarek Hattab, Fbr Lasram, France Energies Marines [Brest], Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD), MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Écologie et Modèles pour l'Halieutique (IFREMER EMH), Institut Français de Recherche pour l'Exploitation de la Mer - Atlantique (IFREMER Atlantique), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Laboratoire d’Océanologie et de Géosciences (LOG) - UMR 8187 (LOG), Centre National de la Recherche Scientifique (CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Institut national des sciences de l'Univers (INSU - CNRS), ANR-10-IEED-0006,FEM,France Energies Marines(2010), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Écologie et Modèles pour l'Halieutique (EMH), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Institut national des sciences de l'Univers (INSU - CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Nord]), and Université du Littoral Côte d'Opale (ULCO)
Subjects: 0106 biological sciences, 010504 meteorology & atmospheric sciences, Species distribution, Biodiversity, Climate change, Aquatic Science, 01 natural sciences, 14. Life underwater, Ecology, Evolution, Behavior and Systematics, 0105 earth and related environmental sciences, Ecology, Species turnover, ACL, 010604 marine biology & hydrobiology, Hierarchical filters, 15. Life on land, Habitat model, Oceanography, Geography, Ecological niche model, 13. Climate action, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Bay
Abstract: International audience; Under climate change, future species assemblages will be driven by the movements and poleward shift of local species and the arrival of more thermophilic species from lower latitudes. To evaluate the impacts of climate change on marine communities in the Bay of Biscay, we used the hierarchical filters modelling approach. Models integrated 3 vertical depth layers and considered 2 Intergovernmental Panel on Climate Change (IPCC) scenarios (Representative Concentration Pathway, RCP2.6 and RCP8.5) and 2 periods (2041-2050 and 2091-2100) to simulate potential future species distributions. Results predicted potentially suitable future ranges for 163 species as well as future arrivals of non-indigenous southern species. We aggregated these results to map changes in species assemblages. Results revealed that coastal areas would undergo the highest species loss among the Bay of Biscay species, depending on their vertical habitat (benthic, demersal, benthopelagic or pelagic). Benthic and demersal species were projected to experience a westward shift, which would induce a deepening of those species. In contrast, pelagic species were projected to shift northward. The potential ecological niche for half of the studied species, mostly benthic and demersal, was projected to decrease under climate change. In addition, a high rate of southern species arrivals is expected (+28%). Assessment of community composition showed high species replacement within the 0-50 m isobath, driven by the replacement of native species by southern ones. This could lead to a major reorganization of trophic networks and have socio-economic impacts.
Published: 2020

15. Origin and Evolution of the Neuroendocrine Control of Reproduction in Vertebrates, With Special Focus on Genome and Gene Duplications

Author: Sylvie Dufour, Catherine Pasqualini, Hervé Tostivint, Karine Rousseau, Bruno Quérat, Hubert Vaudry, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Physiologie de l'Axe Gonadotrope (PAG U1133), Unité de Biologie Fonctionnelle et Adaptative (BFA (UMR_8251 / U1133)), Université Paris Diderot - Paris 7 (UPD7)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Physiologie moléculaire et adaptation (PhyMA), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Institut des Neurosciences Paris-Saclay (NeuroPSI), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Sorbonne Université (SU)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Institut de Recherche pour le Développement (IRD), Evolution des régulations endocriniennes (ERE), Institut des Neurosciences de Paris-Saclay (Neuro-PSI), Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Subjects: 0301 basic medicine, Hypothalamo-Hypophyseal System, endocrine system, Pituitary gland, Evolution, Physiology, [SDV.NEU.NB]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Neurobiology, Neuropeptide, Paralogous Gene, Biology, Neuroendocrinology, Evolution, Molecular, 03 medical and health sciences, 0302 clinical medicine, Kisspeptin, Neuroendocrine Cells, Species Specificity, Gene Duplication, Physiology (medical), biology.animal, medicine, Animals, Humans, Gonads, Molecular Biology, Gene, Phylogeny, [SDV.NEU.PC]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Psychology and behavior, Genome, Human, Reproduction, [SDV.NEU.SC]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Cognitive Sciences, Vertebrate, General Medicine, 030104 developmental biology, medicine.anatomical_structure, Evolutionary biology, Luteinizing hormone, Gonadotropins, 030217 neurology & neurosurgery
Abstract: International audience; In human, as in the other mammals, the neuroendocrine control of reproduction is ensured by the brain-pituitary gonadotropic axis. Multiple internal and environmental cues are integrated via brain neuronal networks, ultimately leading to the modulation of the activity of gonadotropin-releasing hormone (GnRH) neurons. The decapeptide GnRH is released into the hypothalamic-hypophyseal portal blood system, and stimulates the production of pituitary glycoprotein hormones, the two gonadotropins, luteinizing hormone (LH) and follicle-stimulating hormone (FSH). A novel actor, the neuropeptide Kiss, acting upstream of GnRH, has attracted increasing attention in recent years. Other neuropeptides, such as gonadotropin-inhibiting hormone (GnIH)/ RF-amide related peptide (RFRP), and other members of the RF-amide peptide superfamily, as well as various non-peptidic neuromediators such has dopamine, serotonin also provide a large panel of stimulatory or inhibitory regulators. This paper addresses the origin and evolution of the vertebrate gonadotropic axis. Brain-pituitary neuroendocrine axes are typical of vertebrates, the pituitary gland, mediator and amplifier of brain control on peripheral organs, being a vertebrate innovation. The paper reviews, from molecular and functional perspectives, the evolution across vertebrate radiation of some key-actors of the vertebrate neuroendocrine control of reproduction, and traces back their origin along the vertebrate lineage and in other metazoa before the emergence of vertebrates. A focus is given on how gene duplications, resulting from either local events or from whole genome duplication events (WGD), and followed by paralogous gene loss or conservation, might have shaped the evolutionary scenarios of current families of key-actors of the gonadotropic axis.
Published: 2020

16. An integrated investigation of the effects of ocean acidification on adult abalone (Haliotis tuberculata)

Author: Arianna Servili, Manon Coheleach, Aïcha Badou, Stéphanie Auzoux-Bordenave, Sophie G. Martin, Sabine Roussel, Nicolas Richard, Philippe Dubois, Sarah Di Giglio, Fanny Gaillard, Sylvain Huchette, Loïc Malet, Solène Avignon, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Adaptation et diversité en milieu marin (ADMM), Institut national des sciences de l'Univers (INSU - CNRS)-Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Biologie Marine (LBM), Université libre de Bruxelles (ULB), Station de Biologie Marine de Concarneau, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN), Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Scea France Haliotis, This work was supported in part by the ATM program 'Abalone shell mineralization' of the MNHN funded by theMinistère délégué à l’Enseignement Supérieur et à la Recherche (Paris, France), the program 'Acidification des Océans' (ICOBio project) funded by the Fondation pour la Recherche sur la Biodiversité (FRB) and the Ministère de la Transition Ecologique et Solidaire (MTES), and the French LabexMER program (OASYS project). SA was sup‐ported by a post-doctoral fellowship from the MNHN funded by the Ministère de la Transition Ecologique et Solidaire (MTES). SDG is holder of a FRIA PhD fellowship from the National Fund for Scientific Research (NFSR, Belgium) and PhD is a Research Director of the NFSR. The Regional Council of Brittany, the General Council of Finistère, the urban community of Concarneau Cornouaille Agglomération, and the European Regional Development Fund (ERDF) are acknowledged for the funding of the scanning electron microscope (Sigma 300 FE-SEM) at the Concarneau Marine Station., ANR-10-LABX-0019,LabexMER,LabexMER Marine Excellence Research: a changing ocean(2010), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Adaptation et diversité en milieu marin (AD2M), Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS)-Université de Brest (UBO), Institut Français de Recherche pour l'Exploitation de la Mer - Brest (IFREMER Centre de Bretagne), and Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, food.ingredient, Abalone, acl, growth, ocean acidification, shell microstructure, mechanical properties, Aquatic Science, Oceanography, 010603 evolutionary biology, 01 natural sciences, calcification, chemistry.chemical_compound, food, Aquaculture, Hemolymph, 14. Life underwater, Food science, Haliotis, Océanographie biologique, [SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography, Ecology, Evolution, Behavior and Systematics, [SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere, abalone, Ecology, business.industry, Chemistry, 010604 marine biology & hydrobiology, Ocean acidification, Metabolism, Calcium carbonate, [SDE]Environmental Sciences, physiology, gene expression, Seawater, [SDV.EE.BIO]Life Sciences [q-bio]/Ecology, environment/Bioclimatology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, business
Abstract: Ocean acidification (OA) and its subsequent changes in seawater carbonate chemistry are threatening the survival of calcifying organisms. Due to their use of calcium carbonate to build their shells, marine molluscs being particularly vulnerable. This study investigated the effect of CO2-induced OA on adult European abalone (Haliotis tuberculata) using a multi- parameter approach. Biological (survival, growth), physiological (pHT of haemolymph, phagocytosis, metabolism, gene expression) and structural responses (shell strength, nanoindentation measurements, SEM imaging of microstructure) were evaluated throughout a 5-month exposure to ambient (8.0) and low (7.7) pH conditions. During the first two months, the haemolymph pH was reduced, indicating that abalone do not compensate for the pH decrease of their internal fluid. Overall metabolism and immune status were not affected, suggesting that abalone maintain their vital functions when facing OA. However, after four months of exposure, adverse effects on shell growth, calcification, microstructure and resistance were highlighted, whereas the haemolymph pH was compensated. Significant reduction in shell mechanical properties were revealed at pH 7.7, suggesting that OA altered the biomineral architecture leading to a more fragile shell. It is concluded that under lower pH, abalone metabolism is maintained at a cost to growth and shell integrity. This may impact both abalone ecology and aquaculture., info:eu-repo/semantics/inPress
Published: 2020

17. Non‐spherical pearl layers in the Polynesian ‘black‐lipped’ Pinctada margaritifera : The non‐nacreous deposits compared to microstructure of the shell growing edge

Author: Marine Cotte, Cédrik Lo, Yannicke Dauphin, Denis Saulnier, Oulfa Belhadj, Stéphan Rouzière, Kadda Medjoubi, Murielle Salomé, Jean-Pierre Cuif, Andreas Somogyi, Gilles Luquet, Centre de Recherche en Paléontologie - Paris (CR2P), Muséum national d'Histoire naturelle (MNHN)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Department of Biomaterials [Potsdam], Max Planck Institute of Colloids and Interfaces, Max-Planck-Gesellschaft-Max-Planck-Gesellschaft, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Centre de Recherche sur la Conservation (CRC ), Muséum national d'Histoire naturelle (MNHN)-Ministère de la Culture et de la Communication (MCC)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Physique des Solides (LPS), Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11), European Synchrotron Radiation Facility (ESRF), Laboratoire d'Archéologie Moléculaire et Structurale (LAMS), Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Synchrotron SOLEIL (SSOLEIL), Centre National de la Recherche Scientifique (CNRS), Direction des Ressources Marines (DRM), Ministère de l'économie et des finances, Ecosystèmes Insulaires Océaniens (UMR 241) (EIO), Université de la Polynésie Française (UPF)-Institut Louis Malardé [Papeete] (ILM), and Institut de Recherche pour le Développement (IRD)-Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)
Subjects: pearl cultivation, calcium carbonate microstructures, [SDV]Life Sciences [q-bio], Shell (structure), Mineralogy, Shell theory, Aquatic Science, engineering.material, Biology, Edge (geometry), 03 medical and health sciences, 14. Life underwater, [SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/Biomaterials, 030304 developmental biology, 0303 health sciences, pearl layer development, Pinctada margaritifera, 04 agricultural and veterinary sciences, Mineral deposition, biomineralization, Microstructure, biology.organism_classification, eye diseases, 040102 fisheries, engineering, 0401 agriculture, forestry, and fisheries, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, [SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/Paleontology, Pearl, Biomineralization
Abstract: International audience; Cultivated pearls frequently exhibit morphological irregularities making obvious that mineral deposition was irregularly distributed onto nucleus surface. Taking advantage of experimental cultivations with short durations (from 10 days to few months), these irregular deposits predating occurrence of the nacre were investigated in Polynesian pearls by biochemical characterizations and a series of physical methods. Diversity in the resulting data suggests that various in‐depth alterations of the biomineralization mechanism may have occurred during the grafting process, leading to diversity in the biochemical pathways to nacreous deposition. This allows a precise discussion of current views about pearl formation. The “reversed shell theory” is formally disproved through point to point comparison with development of the shell growing edge. Similarity of pearl formation with “regeneration” or “shell repair” is also discussed, emphasizing the differences between these concepts.
Published: 2019

18. Male triploid oysters of Crassostrea gigas exhibit defects in mitosis and meiosis during early spermatogenesis

Author: Floriane Maillard, Nicolas Elie, Nadège Villain‐Naud, Mélanie Lepoittevin, Anne‐Sophie Martinez, Christophe Lelong, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Interactions Cellules Organismes Environnement (ICORE), CHU Caen, Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Université de Caen Normandie (UNICAEN), Normandie Université (NU), Œstrogènes, reproduction, cancer (OeReCa), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Normandie Université (NU)-Normandie Université (NU)-CHU Caen, and Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Tumorothèque de Caen Basse-Normandie (TCBN)
Subjects: Male, mitosis, 0303 health sciences, triploid, [SDV]Life Sciences [q-bio], 030302 biochemistry & molecular biology, fungi, food and beverages, Triploidy, General Biochemistry, Genetics and Molecular Biology, spermatogenesis, 03 medical and health sciences, Crassostrea gigas, Animals, meiosis, oysters, 14. Life underwater, Crassostrea, 030304 developmental biology
Abstract: International audience; The Pacific oyster, Crassostrea gigas is a successive irregular hermaphrodite mollusc which has an annual breeding cycle. Oysters are naturally diploid organisms, but triploid oysters have been developed for use in shellfish aquaculture, with the aim of obtaining sterile animals with commercial value. However, studies have shown that some triploid oysters are partially able to undergo gametogenesis, with numerous proliferating cells closed to diploids (3n alpha) or a partial one with an accumulation of locked germ cells (3n beta). The aim of our study therefore was to understand the regulation of spermatogenesis in both groups of triploid oysters (alpha and beta) from the beginning of spermatogenesis, during mitosis and meiosis events. Our results demonstrate that the reduced spermatogenesis in triploids results from a deregulation of the development of the germinal lineage and the establishment of the gonadal tract led by a lower number of tubules. Morphological cellular investigation also revealed an abnormal condensation of germ cell nuclei and the presence of clear patches in the nucleoplasm of triploid cells, which were more pronounced in beta oysters. Furthermore, studies of molecular and cellular regulation showed a downregulation of mitotic spindle checkpoint in beta oysters, resulting in disturbance of chromosomal segregation, notably on Spindle Assembly Checkpoint involved in the binding of microtubules to chromosomes. Taken together, our results suggest that the lower reproductive ability of triploid oysters may be due to cellular and molecular events such as impairment of spermatogenesis and disruptions of mitosis and meiosis, occurring early and at various stages of the gametogenetic cycle.
Published: 2021

19. Pituitary Hormones mRNA Abundance in the Mediterranean Sea Bass Dicentrarchus labrax: Seasonal Rhythms, Effects of Melatonin and Water Salinity

Author: Jack Falcón, Maria Jesus Herrero, Laura Gabriela Nisembaum, Esther Isorna, Elodie Peyric, Marilyn Beauchaud, Joël Attia, Denis Covès, Michael Fuentès, Maria Jesus Delgado, Laurence Besseau, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Muséum national d'Histoire naturelle (MNHN), Biologie intégrative des organismes marins (BIOM), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Banyuls (OOB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Universidad Complutense de Madrid = Complutense University of Madrid [Madrid] (UCM), Centre de recherche en neurosciences de Lyon - Lyon Neuroscience Research Center (CRNL), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Université Jean Monnet - Saint-Étienne (UJM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Station IFREMER de Palavas-les-Flots, Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Centre de recherche en neurosciences de Lyon (CRNL), Université de Lyon-Université de Lyon-Université Jean Monnet [Saint-Étienne] (UJM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Service d' Experimentations Aquacoles [Palavas les Flots] (LSEA MARBEC), MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD), and Jack, Falcón
Subjects: 0303 health sciences, hormones, Physiology, [SDV]Life Sciences [q-bio], melatonin, photoperiod, pituitary, salinity, [SDV] Life Sciences [q-bio], 03 medical and health sciences, 0302 clinical medicine, Physiology (medical), Peces, QP1-981, annual variations, 14. Life underwater, sea bass, 030217 neurology & neurosurgery, Fisiología animal, hormones, hormone substitutes, and hormone antagonists, 030304 developmental biology
Abstract: In fish, most hormonal productions of the pituitary gland display daily and/or seasonal rhythmic patterns under control by upstream regulators, including internal biological clocks. The pineal hormone melatonin, one main output of the clocks, acts at different levels of the neuroendocrine axis. Melatonin rhythmic production is synchronized mainly by photoperiod and temperature. Here we aimed at better understanding the role melatonin plays in regulating the pituitary hormonal productions in a species of scientific and economical interest, the euryhaline European sea bass Dicentrarchus labrax. We investigated the seasonal variations in mRNA abundance of pituitary hormones in two groups of fish raised one in sea water (SW fish), and one in brackish water (BW fish). The mRNA abundance of three melatonin receptors was also studied in the SW fish. Finally, we investigated the in vitro effects of melatonin or analogs on the mRNA abundance of pituitary hormones at two times of the year and after adaptation to different salinities. We found that (1) the reproductive hormones displayed similar mRNA seasonal profiles regardless of the fish origin, while (2) the other hormones exhibited different patterns in the SW vs. the BW fish. (3) The melatonin receptors mRNA abundance displayed seasonal variations in the SW fish. (4) Melatonin affected mRNA abundance of most of the pituitary hormones in vitro; (5) the responses to melatonin depended on its concentration, the month investigated and the salinity at which the fish were previously adapted. Our results suggest that the productions of the pituitary are a response to multiple factors from internal and external origin including melatonin. The variety of the responses described might reflect a high plasticity of the pituitary in a fish that faces multiple external conditions along its life characterized by marked daily and seasonal changes in photoperiod, temperature and salinity.
Published: 2021

20. Estimating ecotoxicological effects of chemicals on tropical reef-building corals; a systematic review protocol

Author: Dakis-Yaoba Ouédraogo, Olivier Perceval, Christine Ferrier-Pagès, Isabelle Domart-Coulon, Laetitia Hédouin, Karen Burga, Mireille M. M. Guillaume, Christophe Calvayrac, Magalie Castelin, Yorick Reyjol, Romain Sordello, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN), Office français de la biodiversité (OFB), Centre Scientifique de Monaco (CSM), Molécules de Communication et Adaptation des Micro-organismes (MCAM), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Excellence CORAIL (LabEX CORAIL), Université des Antilles (UA)-Institut d'écologie et environnement-Université de la Nouvelle-Calédonie (UNC)-Université de la Polynésie Française (UPF)-Université de La Réunion (UR)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École des hautes études en sciences sociales (EHESS)-Université des Antilles et de la Guyane (UAG)-Institut de Recherche pour le Développement (IRD), Centre de recherches insulaires et observatoire de l'environnement (CRIOBE), Université de Perpignan Via Domitia (UPVD)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Direction de l'Evaluation des Risques (DER), Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Biocapteurs-Analyses-Environnement (BAE), Université de Perpignan Via Domitia (UPVD), Laboratoire de Biodiversité et Biotechnologies Microbiennes (LBBM), PIERRE FABRE-EDF (EDF)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Banyuls (OOB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Patrimoine naturel (PatriNat), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Office français de la biodiversité (OFB), Institut de Recherche pour le Développement (IRD)-Université des Antilles et de la Guyane (UAG)-École des hautes études en sciences sociales (EHESS)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de La Réunion (UR)-Université de la Polynésie Française (UPF)-Université de la Nouvelle-Calédonie (UNC)-Institut d'écologie et environnement-Université des Antilles (UA), Université de Perpignan Via Domitia (UPVD)-École Pratique des Hautes Études (EPHE), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), and Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE)
Subjects: Environmental sciences, [SDV.EE]Life Sciences [q-bio]/Ecology, environment, Contamination, Hermatypic, GE1-350, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Hazard assessment, Scleractinian, Pollution, Toxicity endpoints
Abstract: International audience; Background. Tropical coral reefs cover only ca. 0.1% of the Earth’s surface but host an outstanding biodiversity and provide important ecosystem services to millions of people living nearby. They are currently threatened by global (e.g., climate change) and local (e.g., chemical pollution) stressors that interact in different ways. While global stressors cannot be mitigated by local actions alone, local stressors can be reduced through ecosystem management. A systematic map on the impacts of chemicals arising from anthropogenic activities on tropical reef-building corals, which are the main engineer species of reef ecosystems, was published in 2021. This systematic map gathered an abundant literature (908 articles corresponding to 7937 studies), and identified four well-represented subtopics, amenable to relevant full syntheses. Here, we focused on one of the four subtopics: we aimed to systematically review the evidence on the ecotoxicological effects of chemicals on tropical reef-building corals.Methods. The evidence will be identified from the recent systematic map on the impacts of chemicals arising from anthropogenic activities on tropical reef-building corals. Especially, all studies in the map database corresponding to the knowledge cluster “evidence on the ecotoxicological effects of chemicals on corals” will be selected. To identify the evidence produced since then, a search update will be performed using a subset of the search string used for the systematic map, and titles, abstracts and full-texts will be screened according to the criteria defining the selected cluster of the map. In addition, as the eligibility criteria for the systematic review are narrower than those used to define the cluster in the systematic map, additional screening will be carried out. The included studies will then be critically appraised and a low, medium, or high risk of bias will be assigned to each study. Data will be extracted from studies and synthesised according to a strategy depending on the type of exposure and outcome. Synthesis will be mainly quantitative but also narrative, aiming to identify toxicity thresholds of chemicals for corals.
Published: 2021

21. Intraspecific variation in freshwater tolerance has consequences for telomere dynamics in the euryhaline teleost Dicentrarchus labrax

Author: Farcy Emilie, Lorin-Nebel Catherine, Perez Julie, Blondeau-Bidet Eva, L’Honoré Thibaut, Veyrunes Frédéric, MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD), Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226, Université de Montpellier (UM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)
Subjects: 0106 biological sciences, [SDE.MCG]Environmental Sciences/Global Changes, Lactate dehydrogenase A, Aquatic Science, 010603 evolutionary biology, 01 natural sciences, Freshwater tolerance, Superoxide dismutase, 03 medical and health sciences, Telomerase reverse transcriptase, 14. Life underwater, education, Gene, Ecology, Evolution, Behavior and Systematics, ComputingMilieux_MISCELLANEOUS, 030304 developmental biology, 0303 health sciences, Phenotypic plasticity, education.field_of_study, Telomere length, Cell dynamics, biology, Euryhaline, Energy metabolism, 6. Clean water, Telomere, Cell biology, Real-time polymerase chain reaction, Oxidative stress, biology.protein, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Telomerase reverse transcriptase mRNA expression
Abstract: Stressful events can alter organism physiology at several levels triggering allostatic responses. Telomeres are well-conserved repetitive DNA sequences mainly localised at chromosome's ends, playing a crucial role in DNA stability. Analyses of telomere dynamics are new tools to assess consequences of environmental stress in non-model organisms like fish. In this study, the relationship between freshwater tolerance and telomere dynamics was investigated in the gills of the European sea bass Dicentrarchus labrax . Fluorescent in situ hybridisation of telomeric sequences revealed distal telomeres as well as intrachromosomal telomeres known as interstitial telomere sequences. In order to better understand telomere dynamics in the gills of D. labrax , we used quantitative PCR to measure telomere length and mRNA expression of the catalytic subunit of telomerase reverse transcriptase tert. For the calculation of the relative telomere length, two reference genes were tested: the single copy gene mc2r , encoding melanocortin 2 receptor and the multicopy gene 18S , encoding the 18S ribosomal RNA . We proposed a novel normalisation method to calculate the relative telomere length using both, single and multiple copy genes as references. Cell dynamics was also investigated by measuring mRNA expression of genes involved in apoptosis ( caspase 8 and 9 ), cell proliferation ( proliferation cell nuclear antigen ), aerobic mitochondrial metabolism (ATP citrate-synthase), anaerobic metabolism ( lactate dehydrogenase a ) and antioxidant enzymatic defences ( superoxide dismutase 1 and 2, catalase ). Following a 15-days fresh water exposure, telomere dynamics was not significantly modified in the gills of freshwater tolerant fish. But freshwater intolerant fish exhibited telomere attrition relative to saltwater controls, and lower expression of tert in gills relative to freshwater tolerant fish. This modification of telomere dynamics in intolerant individuals was found to be correlated with lower antioxidant enzymatic defences, a higher aerobic metabolic marker and a lower cellular turnover. These data bring new perspectives for the use of telomere dynamics as an integrative marker to study environmental stress in fish, while considering individual phenotypic plasticity in response to freshwater exposure.
Published: 2021

22. North Atlantic warming over six decades drives decreases in krill abundance with no associated range shift

Author: Martin Edwards, Geraint A. Tarling, Angus Atkinson, Michael T. Burrows, Eric Goberville, Alistair Lindley, Pierre Hélaouët, National Institute of Oceanography (NIO), Council of Scientific and Industrial Research [India] (CSIR), Plymouth Marine Laboratory (PML), Plymouth Marine Laboratory, Marine Biological Association of the United Kingdom (MBA), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), British Antarctic Survey (BAS), Natural Environment Research Council (NERC), Scottish Association for Marine Science (SAMS), Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Subjects: 0106 biological sciences, Krill, 010504 meteorology & atmospheric sciences, Range (biology), QH301-705.5, Biogeography, Climate Change, Population Dynamics, Medicine (miscellaneous), Structural basin, 01 natural sciences, General Biochemistry, Genetics and Molecular Biology, Article, Latitude, Abundance (ecology), Animals, 14. Life underwater, Biology (General), Continuous Plankton Recorder, Atlantic Ocean, Ecosystem, [SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography, 0105 earth and related environmental sciences, biology, Arctic Regions, 010604 marine biology & hydrobiology, Climate-change ecology, Fishes, Temperature, biology.organism_classification, Oceanography, Habitat, 13. Climate action, Environmental science, General Agricultural and Biological Sciences, Euphausiacea
Abstract: In the North Atlantic, euphausiids (krill) form a major link between primary production and predators including commercially exploited fish. This basin is warming very rapidly, with species expected to shift northwards following their thermal tolerances. Here we show, however, that there has been a 50% decline in surface krill abundance over the last 60 years that occurred in situ, with no associated range shift. While we relate these changes to the warming climate, our study is the first to document an in situ squeeze on living space within this system. The warmer isotherms are shifting measurably northwards but cooler isotherms have remained relatively static, stalled by the subpolar fronts in the NW Atlantic. Consequently the two temperatures defining the core of krill distribution (7–13 °C) were 8° of latitude apart 60 years ago but are presently only 4° apart. Over the 60 year period the core latitudinal distribution of euphausiids has remained relatively stable so a ‘habitat squeeze’, with loss of 4° of latitude in living space, could explain the decline in krill. This highlights that, as the temperature warms, not all species can track isotherms and shift northward at the same rate with both losers and winners emerging under the ‘Atlantification’ of the sub-Arctic., Martin Edwards et al. use data spanning from 1958–2017 from the Continuous Plankton Recorder Survey of the North Atlantic Ocean to examine krill distribution and abundance in conjunction with sea surface temperatures and show a 50% decline in surface krill abundance with no associated range shift. These data show that where the northern and southern distributions were previously separated by 8° of latitude, they are now separated by 4°, indicating a warming-induced range constriction.
Published: 2021

23. Marine infrastructures colonisation role on coastal ecosystem biodiversity and productivity in the English Channel

Author: Vivier, Baptiste, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Université de Caen Normandie, Pascal Claquin, Jean-Claude Dauvin, Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)
Subjects: photosynthesis, microphytobenthos, [SDE.IE]Environmental Sciences/Environmental Engineering, benthic communities, Infrastructures marines, Marine infrastructures, production primaire, biodiversité, communautés benthiques, [SDE]Environmental Sciences, photosynthèse, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, primary production, biodiversity
Abstract: Increasing anthropogenic pressures on marine and coastal ecosystems, particularly in the English Channel, are causing changes in habitats, ecosystems and the various associated ecosystem functions. The construction of marine and coastal structures such as dikes as well as the emergence of several projects to install offshore wind turbines is constantly increasing on the French coasts of the English Channel. With these different projects, the artificialization of certain habitats becomes inevitable, so it is essential to assess their ecosystem impacts, and, if possible, to limit them. The MARINEFF project was born in this context, it aims to reconcile human development and ecological benefit. The development of these many coastal infrastructures can also make it possible to create new habitats. The objective of this PhD is to assess biological colonization processes at different scales as well as certain ecological functions such as the primary production on different types of marine infrastructures under controlled conditions and in situ situations on two site the Rade of Cherbourg and the Bay of Seine. Modulated fluorescence (PAM) measurements carried out on the different compartments of benthic primary producers made it possible to evaluate the primary production function and its evolution according to the forcing’s tested or observed. An important part of this PhD focused on the study of hard substrate microphytobenthos, its growth, its photobiology in relation to the type of colonized substrate, its surface structure and the impact of different forcing’s on these parameters. On a larger scale, the development of benthic communities has also been characterized for both sites and on different infrastructures. In situ primary production measurements combined with biodiversity and PAM assessment have made it possible to describe the colonization processes of artificial infrastructures and to assess their effectiveness. This work brings a new vision to the benthic ecology associated with artificial hard substrates and makes it possible to provide reliable estimates of the impact of these structures on the ecosystem.; L’accroissement des pressions anthropiques sur les écosystèmes marins et côtiers, en particulier en Manche, provoquent des modifications des habitats, des écosystèmes et des différentes fonctions écosystémiques associées. La construction d’ouvrages maritimes et côtiers tels que les digues ou des ouvrages portuaires ainsi que l’émergence de plusieurs projets d’implantation d’éoliennes off-shore est en augmentation constante sur les côtes de la Manche française. Avec ces différents projets, l’artificialisation de certains habitats devient inévitable, il est donc primordial d’évaluer leurs impacts écosystémiques, et, si possible, de les limiter. Le projet MARINEFF est né dans ce contexte, il vise à concilier développement humain et bénéfice écologique. Le développement de ces nombreuses infrastructures côtières crée de nouveaux habitats. L’objectif de ces travaux a été d’évaluer les processus de colonisation biologique à différentes échelles ainsi que certaines fonctions écologiques comme la production primaire sur différents types d’infrastructures marines en conditions contrôlées et en situation in situ dans deux sites la rade de Cherbourg et la baie de Seine. Les mesures de fluorescence modulée (PAM) réalisées sur les différents compartiments de producteurs primaires benthiques ont permis d’évaluer la fonction de production primaire et son évolution en fonction des forçages testés ou observés. Une part importante de ce travail s’est concentrée sur l’étude du microphytobenthos de substrat dur, sa croissance, sa photobiologie en relation avec le type de substrat colonisé, sa structure de surface et l’impact de différents forçages sur ces paramètres. A une plus grande échelle, le développement des communautés benthiques a également été caractérisé sur les deux sites et sur différentes infrastructures. Des mesures de production primaire in situ associées à des mesures de biodiversité et de PAM ont permis de décrire les processus de colonisation d’infrastructures artificielles et d’évaluer leur efficacité. Ces travaux apportent une nouvelle vision à l’écologie benthique associée aux substrats durs artificiels et apportent des estimations fiables de l’impact de ces structures sur l’écosystème.
Published: 2021

24. Small- and large-scale processes including anthropogenic pressures as drivers of gastropod communities in the NE Atlantic coast: A citizen science based approach

Author: Anne Lizé, Feunteun Eric, Serranito Bruno, Diméglio Tristan, Ysnel Frédéric, Muséum national d'Histoire naturelle (MNHN), Centre De Recherche et d'Enseignement sur les Systèmes Côtiers (CRESCO), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Planète Mer, Partenaires INRAE, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES), Géoarchitecture : Territoires, Urbanisation, Biodiversité, Environnement, Université de Rennes (UR)-Université de Brest (UBO), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), and University of Liverpool
Subjects: 0106 biological sciences, Environmental Engineering, Gastropoda, Inorganic nitrogen, Intertidal zone, Context (language use), Intertidal, Intertidal ecology, 010603 evolutionary biology, 01 natural sciences, Abundance (ecology), Multi-scale processes, Vertical zonation, Environmental Chemistry, Animals, Humans, Ecosystem, 14. Life underwater, Macroalgae canopy, Waste Management and Disposal, [SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography, Random Forest, biology, Citizen Science, Ecology, 010604 marine biology & hydrobiology, Anthropogenic Effects, Littorina, Biodiversity, biology.organism_classification, Pollution, 13. Climate action, [SDE]Environmental Sciences, Phorcus lineatus, Environmental science, Species richness, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Rocky-shores
Abstract: International audience; Rocky-shores are among the most threatened coastal habitats, particularly under human pressures. While rocky-shore communities have been increasingly used to evaluate local anthropogenic perturbations such as water eutrophication for instance, large-scale variability in relation to both natural and anthropogenic pressures is still overlooked. Here, using citizen science-based data, we applied a Random Forest modelling approach to assess the relative impact of both small-and large-scale processes (including natural and some anthropogenic pressures) on intertidal gastropod communities as well as taxa-specific gastropod abundances over more than 1000 km of the North-East Atlantic coast. Our model results demonstrate that small-scale conditions (i.e. within shore) are determinant in shaping gastropod communities. However, community responses are mainly driven by taxon-specific effects. Among large-scale predictors, high concentrations of inorganic nutrients and total suspended matter, as found in large river plumes, are the main drivers impacting the gastropod communities by depleting both taxon abundances and richness. According to models, the decline in abundance of the yet most prevalent taxa (Steromphala umbilicalis, Patella spp., S. pennanti and Phorcus lineatus) is expected to be between 65% and 85%, while Littorina littorea was the only taxon which may be favoured by high concentrations of inorganic nutrients and total suspended matter. Such results provide relevant insights in the context of ever-increasing needs for bioindicators of coastal ecosystems. Finally, this work sheds light on the value of a citizen science program resulting from a consultation between professional and citizen volunteers as a useful and efficient tool to investigate large-scale processes.
Published: 2021

25. Multiscale Mapping of the Salt Marshes Using Sentinel-2, Dove and UAV Imagery in the Bay of Mont-Saint-Michel

Author: Antoine Mury, Antoine Collin, Dorothée James, Thomas Houet, Hélène Gloria, Mathilde Letard, Eric Feunteun, École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL), Littoral, Environnement, Télédétection, Géomatique (LETG - Rennes), Littoral, Environnement, Télédétection, Géomatique UMR 6554 (LETG), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Université d'Angers (UA)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Brest (UBO)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (IGARUN), Université de Nantes (UN)-Université de Nantes (UN)-Université de Caen Normandie (UNICAEN), Université de Nantes (UN)-Université de Nantes (UN), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)
Subjects: geography, Oceanography, geography.geographical_feature_category, biophysics, Spatiotemporal Analysis, Salt marsh, SAINT, 14. Life underwater, 15. Life on land, [SDE.ES]Environmental Sciences/Environmental and Society, Bay, Geology, Dove
Abstract: The salt marshes, lying at the land-sea temperate interface, furnish a plethora of ecosystems services such as biodiversity niche support, ocean-climate change regulation, ornithology recreo-tourism or plant gathering by hand. They undergo significant worldwide losses due to their conversion into crop fields and to their spatial compression between the rising sea-level and the armoring shoreline. Their monitoring however requires to use a suite of remote sensing sensors to embrace the regional scale while capturing the plant details. This research innovatively adopts a multiscale approach using a cascading spaceborne and airborne process, from the 10-m Sentinel-2, through the 3-m Dove, to the 0.03-m unmanned airborne vehicle (UAV) imageries. The high to very high temporal resolution of the Sentinel-2 and Dove enabled to cover twenties and tens of km2 over five and four years, respectively, in the form of normalized difference vegetation index (NDVI) classes, associated with microphytobenthos, low, medium and high salt marsh vegetation, including the opportunistic Elyma genus. The NDVI was then modelled at the UAV scale (a few km2) using a three-layered NN prediction, providing the final near-infrared (NIR), and the intermediate red, green and blue reflectance imageries, calibrated/validated/tested with the Dove reflectance imageries (R2NIR=0.98, R2red=0.88, R2green=0.84, and R2blue=0.90). The 100fold increase in pixel size allowed to detect the decimeter-scale objects of the tidal flats and salt marshes, to enlarge the NDVI class ranges, and hold great promise to model other spectral bands at the UAV scale for further deeply enhancing the salt marsh mapping.
Published: 2021

26. Combined effects of ocean warming and acidification on the larval stages of the European abalone Haliotis tuberculata

Author: Stéphanie Auzoux-Bordenave, Javid Kavousi, Sylvain Huchette, Carole Di Poi, Fanny Gaillard, Sabine Roussel, Philippe Dubois, Sophie G. Martin, Aïcha Badou, Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Adaptation et diversité en milieu marin (AD2M), Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN), Station de Biologie Marine de Concarneau, Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN), Scea France Haliotis, Laboratoire de Biologie Marine (LBM), Université libre de Bruxelles (ULB), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), ANR-17-EURE-0015,ISBlue,Interdisciplinary Graduate School for the Blue planet(2017), Institut Universitaire Européen de la Mer (IUEM), and Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS)-Université de Brest (UBO)
Subjects: 0106 biological sciences, food.ingredient, animal structures, Abalone, Oceans and Seas, Effects of global warming on oceans, [SDV]Life Sciences [q-bio], Gastropoda, Abalone larvae, [SDV.BID]Life Sciences [q-bio]/Biodiversity, Aquatic Science, Oceanography, 01 natural sciences, Persistence (computer science), food, Animal science, Aquaculture, Animals, Climate change, Seawater, 14. Life underwater, Haliotis, Marine mollusks, Larva, Chemistry, business.industry, 010604 marine biology & hydrobiology, Ocean acidification, Global warming, fungi, Temperature, 04 agricultural and veterinary sciences, Hydrogen-Ion Concentration, Pollution, 13. Climate action, 040102 fisheries, 0401 agriculture, forestry, and fisheries, business
Abstract: International audience; This study examined the physiological responses of the larval stages of Haliotis tuberculata, an economically important abalone, to combined temperature (17 °C and 19 °C) and pH (ambient pH and −0.3 units, i.e., +200% increase in seawater acidity) in a full factorial experiment. Tissue organogenesis, shell formation, and shell length significantly declined due to low pH. High temperature significantly increased the proportion of fully shelled larvae at 24 h post-fertilization (hpf), but increased the proportion of unshelled larvae at 72 hpf. Percentage of swimming larvae at 24 hpf, 72 hpf and 96 hpf significantly declined due to high temperature, but not because of low pH. Larval settlement increased under high temperature, but was not affected by low pH. Despite the fact that no interaction between temperature and pH was observed, the results provide additional evidence on the sensitivity of abalone larvae to both low pH and high temperature. This may have negative consequences for the persistence of abalone populations in natural and aquaculture environments in the near future.
Published: 2021

27. Saint-Paul and Amsterdam rock lobster stocks Harvest Control Rule

Author: Selles, Jules, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Muséum national d'Histoire Naturelle (Paris, France), Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Subjects: Rock lobster, Harvest control rule, [SDV.SA.STP]Life Sciences [q-bio]/Agricultural sciences/Sciences and technics of fishery, Jasus paulensis, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Saint Paul and Amsterdam islands
Published: 2021

28. Evidence on the impacts of chemicals arising from human activity on tropical reef-building corals; a systematic map

Author: Dakis-Yaoba Ouédraogo, Mathilde Delaunay, Romain Sordello, Laetitia Hédouin, Magalie Castelin, Olivier Perceval, Isabelle Domart-Coulon, Karen Burga, Christine Ferrier-Pagès, Romane Multon, Mireille M. M. Guillaume, Clément Léger, Christophe Calvayrac, Pascale Joannot, Yorick Reyjol, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN), Patrimoine naturel (PatriNat), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Office français de la biodiversité (OFB), Laboratoire d'Excellence CORAIL (LabEX CORAIL), Université des Antilles (UA)-Institut d'écologie et environnement-Université de la Nouvelle-Calédonie (UNC)-Université de la Polynésie Française (UPF)-Université de La Réunion (UR)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École des hautes études en sciences sociales (EHESS)-Université des Antilles et de la Guyane (UAG)-Institut de Recherche pour le Développement (IRD), Centre de recherches insulaires et observatoire de l'environnement (CRIOBE), Université de Perpignan Via Domitia (UPVD)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Office français de la biodiversité (OFB), Molécules de Communication et Adaptation des Micro-organismes (MCAM), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Direction de l'Evaluation des Risques (DER), Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), Centre Scientifique de Monaco (CSM), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Direction générale déléguée aux collections (DGD.C), Biocapteurs-Analyses-Environnement (BAE), Université de Perpignan Via Domitia (UPVD), Laboratoire de Biochimie et de Biologie Moléculaire (Université d'Abomey Calavi, Cotonou, Bénin) (LBBM), University of Abomey Calavi (UAC), Institut de Recherche pour le Développement (IRD)-Université des Antilles et de la Guyane (UAG)-École des hautes études en sciences sociales (EHESS)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de La Réunion (UR)-Université de la Polynésie Française (UPF)-Université de la Nouvelle-Calédonie (UNC)-Institut d'écologie et environnement-Université des Antilles (UA), Université de Perpignan Via Domitia (UPVD)-École Pratique des Hautes Études (EPHE), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Université d’Abomey-Calavi = University of Abomey Calavi (UAC), French Office for Biodiversity (OFB), and French National Museum of Natural History (MNHN)
Subjects: fungi, technology, industry, and agriculture, social sciences, Nutrients, biochemical phenomena, metabolism, and nutrition, Pollution, [SDE.ES]Environmental Sciences/Environmental and Society, Environmental sciences, Contamination, Hermatypic, GE1-350, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Scleractinian, geographic locations
Abstract: International audience; Background: Tropical coral reefs cover ca. 0.1% of the Earth's surface but host an outstanding biodiversity and provide important ecosystem services to millions of people living nearby. They are currently threatened by local stressors (e.g. nutrient enrichment and chemical pollution arising from poor land management, sewage effluents, agriculture, industry) and global stressors (mainly seawater warming and acidification, i.e. climate change). Global and local stressors interact in different ways, but the presence of one stressor often reduces the tolerance to additional stress. While global stressors cannot be mitigated solely by local actions, local stressors can be reduced through ecosystem management, therefore minimizing the impact of climate change on coral reefs. We systematically mapped the evidence of impacts of chemicals arising from anthropogenic activities on tropical reef-building corals, which are the main engineer species of reef ecosystems, to inform decision-makers on the available evidence on this topic.Methods: We searched the relevant literature using English terms combined in a tested search string in two publication databases (Scopus and Web Of Science Core Collection). The search string combined terms describing the population (tropical reef-building corals) and the exposure (chemicals). We searched for additional literature through three search engines, three dissertations repositories, 11 specialist websites, and through a call to local stakeholders. Titles, abstracts, and full-texts were successively screened using pre-defned eligibility criteria. A database of all studies included in the map with coded metadata was produced. The evidence was described and knowledge clusters and gaps were identifed through the distribution and frequency of studies into types of exposure and/or types of outcomes and/or types of study.Review findings: The initial searches identifed 23,403 articles which resulted in 15,177 articles after duplicate removal. Among them, 908 articles were retained after screening process, corresponding to 7937 studies (a study being the combination of a taxon, an exposure, and an outcome). Among these studies, 30.5% dealt with the impact of nutrient enrichment on corals while 25% concerned the impact of human activities without referenceto a chemical. The most measured outcomes were those related to the chemical concentration in corals (bioaccumulation, 25.8%), to coral physiology (16.9%), cover (14%), and mortality (9%). Half of the studies (48.4%) were experimental—the exposure was controlled by the researchers—and were conducted in laboratory conditions (39.4%) and in situ (9%). The most studied taxa, exposure, and outcomes were diferent between experimental andobservational studies.Conclusions: We identifed four well-represented subtopics that may be amenable to relevant full syntheses via systematic reviews: (1) evidence on bioaccumulation of chemicals by corals; (2) evidence on the efects of nutrient enrichment on corals; (3) evidence on the efects of human activities on corals; and (4) evidence on the ecotoxicological efects of chemicals on corals (except nutrient enrichment). The systematic map shows that corals in their natural environment can be exposed to many categories of chemicals, and that there is a complete gap in experimental research on the combined efects of more than two categories of chemicals. We therefore encourage research on this topic.
Published: 2021

29. Seasonal Variations in the Biodiversity, Ecological Strategy, and Specialization of Diatoms and Copepods in a Coastal System With Phaeocystis Blooms: The Key Role of Trait Trade-Offs

Author: Elsa Breton, Urania Christaki, Benoit Sautour, Oscar Demonio, Dimitra-Ioli Skouroliakou, Gregory Beaugrand, Laurent Seuront, Loïck Kléparski, Adrien Poquet, Antoine Nowaczyk, Muriel Crouvoisier, Sophie Ferreira, David Pecqueur, Christophe Salmeron, Jean-Michel Brylinski, Arnaud Lheureux, Eric Goberville, Université du Littoral Côte d'Opale (ULCO), Laboratoire d’Océanologie et de Géosciences (LOG) - UMR 8187 (LOG), Institut national des sciences de l'Univers (INSU - CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Nord]), Environnements et Paléoenvironnements OCéaniques (EPOC), Observatoire aquitain des sciences de l'univers (OASU), Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Marine Biological Association of the United Kingdom (MBA), Université Côte d'Azur - Faculté de Médecine (UCA Faculté Médecine), Université Côte d'Azur (UCA), Observatoire océanologique de Banyuls (OOB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), UMR 5805 Environnements et Paléoenvironnements Océaniques et Continentaux (EPOC), Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École pratique des hautes études (EPHE), Pluridisciplinarité au service de l’observation et de la recherche en environnement et astronomie (UMS POREA), Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre National de la Recherche Scientifique (CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Institut national des sciences de l'Univers (INSU - CNRS), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), Université du Littoral Côte d'Opale [ULCO], and Laboratoire d’Océanologie et de Géosciences (LOG) - UMR 8187 [LOG]
Subjects: 0106 biological sciences, copepods, Science, Biodiversity, Ocean Engineering, Ecological succession, Aquatic Science, QH1-199.5, Oceanography, 010603 evolutionary biology, 01 natural sciences, diatoms, Ecosystem, 14. Life underwater, functional traits, [SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces, environment, [SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography, Water Science and Technology, biodiversity, trade-off, Abiotic component, [SDV.EE]Life Sciences [q-bio]/Ecology, environment, Phaeocystis, Global and Planetary Change, biology, Ecology, seasonality, 010604 marine biology & hydrobiology, fungi, General. Including nature conservation, geographical distribution, 15. Life on land, Plankton, biology.organism_classification, Diatom, [SDE]Environmental Sciences, Species richness, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, human activities, Copepod
Abstract: Although eutrophication induced by anthropogenic nutrient enrichment is a driver of shifts in community composition and eventually a threat to marine biodiversity, the causes and consequences on ecosystem functioning remain greatly unknown. In this study, by applying a trait-based approach and measuring niche breadth of diatoms and copepods, the drivers and underlying mechanisms of the seasonal species succession of these ecological communities in a coastal system dominated in spring by Phaeocystis blooms were explored. It is suggested that the seasonal succession of diatoms and copepods is the result of several trade-offs among functional traits that are controlled by the seasonal abiotic and biotic pressure encountered by the plankton communities. The results of this study highlight that a trade-off between competition and predator, i.e., weak competitors are better protected against predation, plays an important role in promoting plankton species richness and triggers the Phaeocystis bloom. As often observed in eutrophicated ecosystems, only the biotic homogenization of the copepod community and the shift in the diet of copepods toward Phaeocystis detrital materials have been detected during the Phaeocystis bloom. The diatom and copepod communities respond synchronously to fluctuating resources and biotic conditions by successively selecting species with specific traits. This study confirms the key role of competition and predation in controlling annual plankton succession.
Published: 2021

30. Whales and dolphins: beautiful sentinel species to be studied in the framework of a coastal zone observatory, but very complex to approach

Author: Jung, Jean-Luc, Le Berre, Iwan, Coché, Lorraine, Madon, Bénédicte, Foulquier, Eric, David, Romain, Le Bras, Yvan, Arnaud, Elie, Sananikone, Julien, Lerigoleur, Emilie, Lopez, Pascal Jean, Bouveret, Laurent, Gandilhon, Nadège, Millon, Cédric, Freriks, Claire, Concaud, Jean-Pierre, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Université de Brest (UBO), Littoral, Environnement, Télédétection, Géomatique UMR 6554 (LETG), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Université d'Angers (UA)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Brest (UBO)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (IGARUN), Université de Nantes (UN)-Université de Nantes (UN), European Research Infrastructure on Highly Pathogenic Agents (ERINHA-AISBL), Pôle national de données de Biodiversité (PNDB), Géographie de l'environnement (GEODE), Centre National de la Recherche Scientifique (CNRS)-Université Toulouse - Jean Jaurès (UT2J), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Musée National d'Histoire Naturelle de Luxembourg (MNHN), Observatoire des Mammiferes Marins de lArchipel Guadeloupeen (OMMAG), BREACH NPO, OHM Littoral Caraïbe, LabEx DRIIHM, Labex DRIIHM, CNRS InEE, ANR-11-LABX-0010,DRIIHM / IRDHEI,Dispositif de recherche interdisciplinaire sur les Interactions Hommes-Milieux(2011), and ANR-19-DATA-0022,SO-DRIIHM,Impulser la science ouverte au sein du Dispositif de Recherche Interdisciplinaire sur les Interactions Hommes-Milieux (DRIIHM) : co-design d'une e-infrastructure intégrant les principes FAIR(2019)
Subjects: trafic maritime, [SDV.BA]Life Sciences [q-bio]/Animal biology, [SDE]Environmental Sciences, Suivi, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Cétacés, données, OHM Littoral Caraibe, ComputingMilieux_MISCELLANEOUS, FAIR
Abstract: International audience
Published: 2021

31. Acid–base balance in the hæmolymph of European abalone (Haliotis tuberculata) exposed to CO2-induced ocean acidification

Author: Philippe Dubois, Sandra Chevret, Sophie Martin, Stéphanie Auzoux-Bordenave, Sarah Di Giglio, Aïcha Badou, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Adaptation et diversité en milieu marin (AD2M), Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Station de Biologie Marine de Concarneau, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN), Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Biologie Marine (LBM), Université libre de Bruxelles (ULB), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Adaptation et diversité en milieu marin (ADMM), Institut national des sciences de l'Univers (INSU - CNRS)-Station biologique de Roscoff (SBR), and Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, food.ingredient, Abalone, Physiology, Alkalinity, acid-base balance, ocean acidification, Acid–base homeostasis, 010603 evolutionary biology, 01 natural sciences, Biochemistry, food, Dissolved organic carbon, Hemolymph, haemolymph pH and alkalinity, pH SW: seawater pH (total scale), 14. Life underwater, Haliotis, pH HL : haemolymph pH (total scale), Molecular Biology, ComputingMilieux_MISCELLANEOUS, abalone, RCP 8.5: Representative Concentration Pathway 8.5, Chemistry, 010604 marine biology & hydrobiology, [SDV.BA]Life Sciences [q-bio]/Animal biology, Ocean acidification, buffer capacity pH on the Total scale, 13. Climate action, Environmental chemistry, [SDE]Environmental Sciences, Seawater
Abstract: International audience; Ocean acidification (OA) and the associated changes in seawater carbonate chemistry pose a threat to calcifying organisms. This is particularly serious for shelled molluscs, in which shell growth and microstructure has been shown to be highly sensitive to OA. To improve our understanding of the responses of abalone to OA, this study investigated the effects of CO 2-induced ocean acidification on extra-cellular acid-base parameters in the European abalone Haliotis tuberculata. Three-year-old adult abalone were exposed for 15 days to three different pH levels (7.9, 7.7, 7.4) representing current and predicted near-future conditions. Haemolymph pH and total alkalinity were measured at different time points during exposure and used to calculate the carbonate parameters of the extracellular fluid. Total protein content was also measured to determine whether seawater acidification influences the composition and buffer capacity of haemolymph. Extracellular pH was maintained at seawater pH 7.7 indicating that abalones are able to buffer moderate acidification (-0.2 pH units). This was not due to an accumulation of HCO 3-ions but rather to a high haemolymph protein concentration. By contrast, haemolymph pH was significantly decreased after 5 days of exposure to pH 7.4, indicating that abalone do not compensate for higher decreases in seawater pH. Total alkalinity and dissolved inorganic carbon were also significantly decreased after 15 days of low pH exposure. It is concluded that changes in the acid-base balance of the haemolymph might be involved in deleterious effects recorded in adult H. 2 tuberculata facing severe OA stress. This would impact both the ecology and aquaculture of this commercially important species.
Published: 2021

32. Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides

Author: Emilie Réalis-Doyelle, Julie Schwartz, Cédric Cabau, Lorane Le Franc, Benoit Bernay, Guillaume Rivière, Christophe Klopp, Pascal Favrel, Génétique Physiologie et Systèmes d'Elevage (GenPhySE ), Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Système d'Information des GENomes des Animaux d'Elevage (SIGENAE), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRA), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Interactions Cellules Organismes Environnement (ICORE), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-CHU Caen, Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Tumorothèque de Caen Basse-Normandie (TCBN), Council of the Normandy Region (RIN ECUME: 18E01643-18P02383), ANR-14-CE02-0020,NEMO,Neuropeptides d'organismes marins(2014), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), CHU Caen, Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Université de Caen Normandie (UNICAEN), Normandie Université (NU), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRAE)
Subjects: reproduction, [SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology, animal structures, QH301-705.5, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], [SDV]Life Sciences [q-bio], fungi, nervous system, neuropeptides, Biology (General), transcriptome, [SDV.BDLR.RS]Life Sciences [q-bio]/Reproductive Biology/Sexual reproduction
Abstract: The neuropeptides involved in the regulation of reproduction in the Pacific oyster (Crassostrea gigas) are quite diverse. To investigate this diversity, a transcriptomic survey of the visceral ganglia (VG) was carried out over an annual reproductive cycle. RNA-seq data from 26 samples corresponding to VG at different stages of reproduction were de novo assembled to generate a specific reference transcriptome of the oyster nervous system and used to identify differentially expressed transcripts. Transcriptome mining led to the identification of novel neuropeptide precursors (NPPs) related to the bilaterian Eclosion Hormone (EH), crustacean female sex hormone/Interleukin 17, Nesfatin, neuroparsin/IGFBP, prokineticins, and urotensin I, to the protostome GNQQN, pleurin, prohormones 3 and 4, prothoracotropic hormones (PTTH), and QSamide/PXXXamide, to the lophotrochozoan CCWamide, CLCCY, HFAamide, and LXRX, and to the mollusk-specific NPPs CCCGS, clionin, FYFY, GNamide, GRWRN, GSWN, GWE, IWMPxxGYxx, LXRYamide, RTLFamide, SLRFamide, and WGAGamide. Among the complete repertoire of NPPs, no sex-biased expression was observed. However, 25 NPPs displayed reproduction stage-specific expression, supporting their involvement in the control of gametogenesis or associated metabolisms.
Published: 2021

33. Interactions between Filter-Feeding Bivalves and Toxic Diatoms: Influence on the Feeding Behavior of Crassostrea gigas and Pecten maximus and on Toxin Production by Pseudo-nitzschia

Author: Aurore Sauvey, Bertrand Le Roy, Juliette Fauchot, Christophe Lelong, Marie Pavie, Françoise Denis, Orianne Jolly, Hélène Hégaret, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Œstrogènes, reproduction, cancer (OeReCa), Université de Caen Normandie (UNICAEN), Centre de recherches en environnement côtier (CREC), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), and Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, toxin accumulation, Health, Toxicology and Mutagenesis, 010501 environmental sciences, Toxicology, medicine.disease_cause, 01 natural sciences, Isochrysis galbana, chemistry.chemical_compound, filter-feeding bivalves, Pecten, Kainic Acid, biology, Haptophyta, Domoic acid, Scallop, Medicine, Crassostrea, Pecten maximus, Clearance rate, Neurotoxins, Pseudo-nitzschia, Zoology, [SDV.TOX.TCA]Life Sciences [q-bio]/Toxicology/Toxicology and food chain, Article, Species Specificity, medicine, Animals, Shellfish Poisoning, 14. Life underwater, 0105 earth and related environmental sciences, Diatoms, filtration, Toxin, 010604 marine biology & hydrobiology, Feeding Behavior, Crassostrea gigas, interactions, biology.organism_classification, [SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology, chemistry, domoic acid, Marine Toxins, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis
Abstract: Among Pseudo-nitzschia species, some produce the neurotoxin domoic acid (DA), a source of serious health problems for marine organisms. Filter-feeding organisms—e.g., bivalves feeding on toxigenic Pseudo-nitzschia spp.—are the main vector of DA in humans. However, little is known about the interactions between bivalves and Pseudo-nitzschia. In this study, we examined the interactions between two juvenile bivalve species—oyster (Crassostrea gigas) and scallop (Pecten maximus)—and two toxic Pseudo-nitzschia species—P. australis and P. fraudulenta. We characterized the influence of (1) diet composition and the Pseudo-nitzschia DA content on the feeding rates of oysters and scallops, and (2) the presence of bivalves on Pseudo-nitzschia toxin production. Both bivalve species fed on P. australis and P. fraudulenta. However, they preferentially filtered the non-toxic Isochrysis galbana compared to Pseudo-nitzschia. The presence of the most toxic P. australis species resulted in a decreased clearance rate in C. gigas. The two bivalve species accumulated DA in their tissues (up to 0.35 × 10−3 and 5.1 × 10−3 µg g−1 for C. gigas and P. maximus, respectively). Most importantly, the presence of bivalves induced an increase in the cellular DA contents of both Pseudo-nitzschia species (up to 58-fold in P. fraudulenta in the presence of C. gigas). This is the first evidence of DA production by Pseudo-nitzschia species stimulated in the presence of filter-feeding bivalves. The results of this study highlight complex interactions that can influence toxin production by Pseudo-nitzschia and accumulation in bivalves. These results will help to better understand the biotic factors that drive DA production by Pseudo-nitzschia and bivalve contamination during Pseudo-nitzschia blooms.
Published: 2021

34. Invasiones biologicas en Francia: Alarmantes costos y lagunas de conocimiento aun mas alarmantes

Author: Christophe Diagne, Boris Leroy, Liliana Ballesteros-Mejia, Eléna Manfrini, Elena Angulo, David Renault, Franck Courchamp, Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), French National Research Agency (ANR) [ANR-14-CE02-0021], BNP-Paribas Foundation Climate Initiative, AXA Research Fund Chair of Invasion Biology, BiodivERsA, BiodivERsA-Belmont Forum Project \'Alien Scenarios\' [BMBF/PT DLR 01LC1807C], ASICS project [ANR20-EBI5-0004], French Polar Institute Paul-Emile Victor (Project IPEV 136 'Subanteco'), ANR-14-CE02-0021,InvaCosts,Insectes envahissants et leurs couts pour la biodiversité, l'économie et la santé humaine(2014), Université Paris-Saclay, Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), and Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0106 biological sciences, InvaCost, QH301-705.5, exotic, andnbsp, Plant Science, Aquatic Science, nonindigenous, 010603 evolutionary biology, 01 natural sciences, non-native, non-indigenous, Biology (General), economic threat, damage costs, Ecology, Evolution, Behavior and Systematics, invasive alien species, Ecology, management costs, 010604 marine biology & hydrobiology, Ecological Modeling, 15. Life on land, Geography, Insect Science, [SDE]Environmental Sciences, Animal Science and Zoology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Abstract: The ever-increasing number of introduced species profoundly threatens global biodiversity. While the ecological and evolutionary consequences of invasive alien species are receiving increasing attention, their economic impacts have largely remained understudied, especially in France. Here, we aimed at providing a general overview of the monetary losses (damages caused by) and expenditures (management of) associated with invasive alien species in France. This country has a long history of alien species presence, partly due to its long-standing global trade activities, highly developed tourism, and presence of overseas territories in different regions of the globe, resulting in a conservative minimum of 2,750 introduced and invasive alien species. By synthesizing for the first time the monetary losses and expenditures incurred by invasive alien species in Metropolitan France and French overseas territories, we obtained 1,583 cost records for 98 invasive alien species. We found that they caused a conservative total amount ranging between US$ 1,280 million and 11,535 million in costs over the period 1993–2018. We extrapolated costs for species invading France, for which costs were reported in other countries but not in France, which yielded an additional cost ranging from US$ 151 to 3,030 millions. Damage costs were nearly eight times higher than management expenditure. Insects, and in particular the Asian tiger mosquito Aedes albopictus and the yellow fever mosquito Ae. aegypti, totalled very high economic costs, followed by non-graminoid terrestrial flowering and aquatic plants (Ambrosia artemisiifolia, Ludwigia sp. and Lagarosiphon major). Over 90% of alien species currently recorded in France had no costs reported in the literature, resulting in high biases in taxonomic, regional and activity sector coverages. To conclude, we report alarming costs and even more alarming knowledge gaps. Our results should raise awareness of the importance of biosecurity and biosurveillance in France, and beyond, as well as the crucial need for better reporting and documentation of cost data.
Published: 2021

35. Economic costs of invasive alien species across Europe

Author: Anna J. Turbelin, Franck Courchamp, Melina Kourantidou, Marina Golivets, Phillip J. Haubrock, César Capinha, Nigel G. Taylor, Liliana Ballesteros-Mejia, Natalia Kirichenko, Elena Angulo, Ana Novoa, Franz Essl, Thomas W. Bodey, Boris Leroy, Christophe Diagne, David Renault, Laura N. H. Verbrugge, Ross N. Cuthbert, Repositório da Universidade de Lisboa, Faculty of Fisheries and Protection of Waters [University of South Bohemia], University of South Bohemia, Senckenberg Research Institute and Natural History Museum [Frankfurt], Senckenberg – Leibniz Institution for Biodiversity and Earth System Research - Senckenberg Gesellschaft für Naturforschung, Leibniz Association-Leibniz Association, Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Helmholtz Centre for Ocean Research [Kiel] (GEOMAR), Queen's University [Belfast] (QUB), Czech Academy of Sciences [Prague] (CAS), Institut de recherche de la Tour du Valat, University of Aberdeen, University of Exeter, Universidade Nova de Lisboa = NOVA University Lisbon (NOVA), University of Vienna [Vienna], Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ), Siberian Federal University (SibFU), V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Sciences (SB RAS), University of Southern Denmark (SDU), Woods Hole Oceanographic Institution (WHOI), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), Aalto University, Helsingin yliopisto = Helsingfors universitet = University of Helsinki, French National Research Agency (ANR) [ANR-14-CE02-0021], BNP-Paribas Foundation Climate Initiative, AXA Research Fund Chair of Invasion Biology, BiodivERsA, EXPRO (Czech Science Foundation) [19-28807X], Czech Academy of SciencesCzech Academy of Sciences [RVO 67985939], Portuguese National Funds through Fundacao para a Ciencia e a Tecnologia [CEECIND/02037/2017, UIDB/00295/2020, UIDP/00295/2020], Alexander von Humboldt Foundation, European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant [747120], BiodivERsA-Belmont Forum Project \'Alien Scenarios\' [BMBF/PT DLR 01LC1807C], Russian Foundation for Basic ResearchRussian Foundation for Basic Research (RFBR) [19-04-01029-A], Sukachev Institute of Forest SB RAS [0287-2021-0011], AXA Research Fund Chair of Invasion Biology of University Paris Saclay, Belmont-Forum call 2018 on biodiversity scenarios, Russian Foundation for Basic Research (RFBR) [19-04-01029-A], ANR-14-CE02-0021,InvaCosts,Insectes envahissants et leurs couts pour la biodiversité, l'économie et la santé humaine(2014), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), University of Helsinki, Senckenberg Gesellschaft für Naturforschung, Université Paris-Saclay, Queen's University Belfast, Czech Academy of Sciences, Research Institute for the Conservation of Mediterranean Wetlands, Universidade de Lisboa, University of Vienna, Helmholtz Centre for Environmental Research, RAS - Sukachev Institute of Forest, Siberian Branch, Woods Hole Oceanographic Institution, Unite Biologie des Organismes et Ecosystemes Aquatiques, University of Rennes 1, Water and Environmental Eng., Department of Built Environment, Aalto-yliopisto, Helsinki Institute of Sustainability Science (HELSUS), and Department of Forest Sciences
Subjects: 0106 biological sciences, Czech, InvaCost, QH301-705.5, Library science, Plant Science, Alien, Aquatic Science, 010603 evolutionary biology, 01 natural sciences, monetary impacts, Economic cost, Agency (sociology), non-native biota, media_common.cataloged_instance, European Union, Biology (General), European union, Socio-economic correlates, Alien species, Ecology, Evolution, Behavior and Systematics, biodiversity, media_common, SDG 15 - Life on Land, socio-economic correlates, Ecology, 010604 marine biology & hydrobiology, Ecological Modeling, Biodiversity, language.human_language, Non-native biota, Bodiversity, Insect Science, Monetary impacts, [SDE]Environmental Sciences, language, 511 Economics, Animal Science and Zoology, Portuguese, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Literature survey, Socioeconomic sectors, monetary impact, socioeconomic sectors
Abstract: Funding Information: The authors acknowledge the French National Research Agency (ANR-14-CE02-0021) and the BNP-Paribas Foundation Climate Initiative for funding the InvaCost project that allowed the construction of the InvaCost database. The present work was conducted following a workshop funded by the AXA Research Fund Chair of Invasion Biology and is part of the AlienScenario project funded by BiodivERsA and Belmont-Forum call 2018 on biodiversity scenarios. AN acknowledges funding from EXPRO grant no. 19-28807X (Czech Science Foundation) and long-term research development project RVO 67985939 (The Czech Academy of Sciences). CC was supported by Portuguese National Funds through Fundation para a Ci?ncia e a Tecnologia (CEECIND/02037/2017; UIDB/00295/2020 and UIDP/00295/2020). RNC was funded by a research fellowship from the Alexander von Humboldt Foundation. TWB acknowledges funding from the European Union?s Horizon 2020 research and innovation programme under the Marie Sk?odowska-Curie grant no. 747120. MG and CD were funded by the BiodivERsA-Belmont Forum Project ?Alien Scenarios? (BMBF/PT DLR 01LC1807C). NK was partially supported by the Russian Federationn Foundation for Basic Research (grant no.19-04-01029-A) [national literature survey] and the basic project of Sukachev Institute of Forest SB RAS (project no. 0287-2021-0011) [InvaCost database contribution]. DR thanks InEE-CNRS who supports the network GdR 3647 ?Invasions Biologiques?. Funds for AJT, EA and LBM contracts come from the AXA Research Fund Chair of Invasion Biology of University Paris Saclay. BL, DR and FC are French agents (affiliated, respectively, to the Mus?um National d?Histoire Naturelle, University of Rennes and Centre National de la Recherche Scientifique); their salaries, for which they are grateful, are typically not accounted for in assessment of costs on biological invasions. At last, the authors want to express their thanks for the translation of the abstract to other European languages, namely to Paride Balzani, Antonin Kouba, Sandra Hodic, and ROS Educational Consultancy Ltd & Garnock Media Ltd
Published: 2021

36. Complex spatial patterns of genetic differentiation in the Caribbean mustard hill coral Porites astreoides

Author: Andrew C. Baker, Etienne Bezault, Flavia L. D. Nunes, Xaymara M. Serrano, Claude Bouchon, Cécile Fauvelot, Aurélien Japaud, Florentine Riquet, Laboratoire d'océanographie de Villefranche (LOV), Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de la Mer de Villefranche (IMEV), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Ecologie marine tropicale des océans Pacifique et Indien (ENTROPIE [Nouvelle-Calédonie]), Ifremer - Nouvelle-Calédonie, Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD [Nouvelle-Calédonie])-Université de la Nouvelle-Calédonie (UNC), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Dynamiques de l'Environnement Côtier (DYNECO), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Atlantic Oceanographic and Meteorological Laboratory, National Oceanographic and Atmospheric Administration, Rosenstiel School of Marine and Atmospheric Science (RSMAS), University of Miami [Coral Gables], Laboratoire d'Excellence CORAIL (LabEX CORAIL), Université des Antilles (UA)-Institut d'écologie et environnement-Université de la Nouvelle-Calédonie (UNC)-Université de la Polynésie Française (UPF)-Université de La Réunion (UR)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-École pratique des hautes études (EPHE), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École des hautes études en sciences sociales (EHESS)-Université des Antilles et de la Guyane (UAG)-Institut de Recherche pour le Développement (IRD)
Subjects: 0106 biological sciences, [SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere, 0303 health sciences, Genetic diversity, biology, Range (biology), Ecology, Coral, Aquatic Science, biology.organism_classification, 010603 evolutionary biology, 01 natural sciences, Porites astreoides, 03 medical and health sciences, Effective population size, Genetic structure, Spatial ecology, 14. Life underwater, ComputingMilieux_MISCELLANEOUS, 030304 developmental biology, Isolation by distance
Abstract: In contrast to most Caribbean corals, the mustard hill coral Porites astreoides Lamarck, 1816 has seen its relative coverage increasing across its distribution range in recent years. Interpreting the reasons of such success remains, however, challenging. On the one hand, genetic homogeneity has been observed over large distances, in line with a large effective population size and/or high migration rate. On the other hand, strong genetic differentiation has been recently observed across depths within regions, consistent with some of the life history traits of P. astreoides, such as brooding of larvae followed by a short larval pelagic duration. Based on seven informative microsatellite markers and extensive sampling covering a large part of the P. astreoides distribution in the Caribbean, including six depth transects, we assessed multi-scale genetic connectivity patterns to test whether populations were structured by bathymetry, microenvironments or geography. While genetic diversity was similar in P. astreoides populations, genetic differentiation was observed not only over broad spatial scales, but also at the island scale or within a site along a depth transect. Isolation by distance was observed across the Lesser Antilles populations. However, genetic homogeneity was also observed over large distances, which, in juxtaposition to significant genetic structure within various locations across the Caribbean, has led to a complex spatial pattern of genetic differentiation in P. astreoides for which several likely explanations, including mixed reproductive strategy, are discussed.
Published: 2021

37. Kakila database: Towards a FAIR community approved database of cetacean presence in the waters of the Guadeloupe Archipelago, based on citizen science

Author: Etienne Jeannesson, Romain David, Nadège Gandilhon, Iwan Le Berre, Laurent Bouveret, Jean-Luc Jung, Pascal Jean Lopez, Julien Sananikone, Yvan Le Bras, Emilie Lerigoleur, Maxime Sèbe, Bénédicte Madon, Elie Arnaud, Eric Foulquier, Lorraine Coché, Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS), Littoral, Environnement, Télédétection, Géomatique UMR 6554 (LETG), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Université d'Angers (UA)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Brest (UBO)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (IGARUN), Université de Nantes (UN)-Université de Nantes (UN), Patrimoine naturel (PatriNat), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Office français de la biodiversité (OFB), Observatoire des Mammiferes Marins de l'Archipel Guadeloupeen (OMMAG), European Research Infrastructure on Highly Pathogenic Agents (ERINHA-AISBL), Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie (MISTEA), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Littoral, Environnement, Télédétection, Géomatique (LETG - Brest), Université de Nantes (UN)-Université de Nantes (UN)-Université de Caen Normandie (UNICAEN), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Sanctuaire Agoa, Géographie de l'environnement (GEODE), Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), Aménagement des Usages des Ressources et des Espaces marins et littoraux - Centre de droit et d'économie de la mer (AMURE), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Université de Toulon - UFR Sciences et Techniques (UTLN UFR ScT), Université de Toulon (UTLN), Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Université de Brest (UBO), The Kakila database exists because volunteers invested their personal time and competences on the study of marine mammals at sea and this over years. We are particularly grateful to Caroline Azzinari (BREACH) and to all the volunteers of the OMMAG NPOs who collated the observation data contained in the Kakila database. We also warmly thank the whale watchers who decided to share their own and precious data and, in particular, Cedric Millon (whale-watching Cétacés Caraïbes), Claire Freriks (Evasion Marine and Guadeloupe Evasion Découverte) and Jean-Pierre Concaud (Guadeloupe Evasion Découverte).Ellen Feunteun (Agoa Sanctuary) effectively helped us analysing the data from the Agoa Sanctuary.This research was funded by the LabEx DRIIHM French programme 'Investissements d’Avenir' (ANR-11-LABX-0010), which is managed by the ANR. It has been awarded in the OHM Littoral Caraïbe 2019 call for proposal. Lorraine Coché was recruited with the support of the Fondation de France, within the framework of the TRAFIC project, laureate of its research programme 'The future of the coastal and sea worlds' (project N° 1940). The last step of the process, the Darwinisation of the Kakila database, was partially funded by the SO-DRIIHM project (ANR-19-DATA-0022) from the Flash call on Open Science.During his ERINHA AISBL involvement, Romain David was supported by the EOSC-Life European Programme under grant agreement N°824087 and ERINHA-Advance European Programme under grant agreement N° 824061.The Kakila database was used as a case study during the ecoinfofair2020 workshop (Concarneau, 19-21 octobre, organised by Yvan Le Bras, PNDB, MNHN). We are grateful to all the workshop participants, who helped in the FAIRisation process of Kakila and, in particular, to Guillaume Body (OFB), Claudia Lavalley (UMR TETIS), Sophie Pamerlon (GBIF) and Sarah Valentin (OFB)., ANR-19-DATA-0022,SO-DRIIHM,Impulser la science ouverte au sein du Dispositif de Recherche Interdisciplinaire sur les Interactions Hommes-Milieux (DRIIHM) : co-design d'une e-infrastructure intégrant les principes FAIR(2019), ANR-11-LABX-0010,DRIIHM / IRDHEI,Dispositif de recherche interdisciplinaire sur les Interactions Hommes-Milieux(2011), European Project: 824087,EOSC-Life, European Project: 824061,ERINHA-Advance, Normandie Université (NU)-Normandie Université (NU)-Université d'Angers (UA)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Brest (UBO)-Université de Rennes 2 (UR2), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Géographie et d'Aménagement Régional de l'Université de Nantes (IGARUN), Pôle national de données de Biodiversité (PNDB), Observatoire des Mammiferes Marins de lArchipel Guadeloupeen (OMMAG), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), BREACH NPO, Pôle national de données de biodiversité (PNDB), Centre National de la Recherche Scientifique (CNRS)-Université Toulouse - Jean Jaurès (UT2J), Centre National de la Recherche Scientifique (CNRS), Muséum national d'Histoire naturelle (MNHN), Centre National de la Recherche Scientifique (CNRS)-Université de Brest (UBO)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), PNDB (Pôle national de données de Biodiversité), Centre de recherche en gestion i3 (i3-CRG), École polytechnique (X)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), and Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE)
Subjects: 0106 biological sciences, observation, QH301-705.5, Biodiversity & Conservation, Biodiversity, Context (language use), computer.software_genre, OHM Littoral Caraibe, 01 natural sciences, cetaceans, 03 medical and health sciences, Marine mammal, [SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems, Marine Biota & Ecosystems, biology.animal, citizen science, French West Indies, Ecology & Environmental sciences, Citizen science, Animalia, 14. Life underwater, Biology (General), Ecology, Evolution, Behavior and Systematics, database, 030304 developmental biology, FAIR, Caribbean, 0303 health sciences, geography, geography.geographical_feature_category, [INFO.INFO-DB]Computer Science [cs]/Databases [cs.DB], Ecology, Database, biology, Labex DRIIHM, Whale, 010604 marine biology & hydrobiology, Exclusive economic zone, Data Paper (Biosciences), Mammalia, Zoology & Animal Biology, Archipelago, Marine protected area, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, computer
Abstract: In the French West Indies, more than 20 species of cetaceans have been observed over the last decades. The recognition of this hot spot of biodiversity of marine mammals observed in the French Exclusive Economic Zone of the West Indies motivated the French government to create in 2010 a marine protected area (MPA) dedicated to the conservation of marine mammals: the Agoa sanctuary. Threats that cetacean populations face are multiple but well-documented. Cetacean conservation can only be achieved if relevant and reliable data are available, starting by occurrence data. In the Guadeloupe archipelago, and in addition to some data collected by the Agoa sanctuary, occurrence data are mainly available through the contribution of citizen science and of local stakeholders (i.e., non-profit organizations (NPO) and whale-watchers). However, no observation network has been coordinated and no standards exist for cetacean presence data collection and management.In recent years, several whale watchers and NPOs regularly collected cetacean observation data around the Guadeloupe archipelago. These observations are highly valuable, often made by experienced observers able to accurately distinguish between species, and some of them were used for scientific targeted studies Stevick et al. 2016, Heenehan et al. 2019, Stevick et al. 2018, Kennedy et al. 2014. Our objective was to gather datasets from three Guadeloupean whale watchers, two NPOs and the Agoa sanctuary, that agreed to share their data. These heterogeneous data went through a careful process of curation and standardization in order to create a new extended database, using a newly designed metadata set. This aggregated dataset contains a total of 4,704 records of 21 species collected in the Guadeloupe Archipelago from 2000 to 2019. The database was called Kakila ("who is there?" in Guadeloupean Creole). The Kakila database was developed following the FAIR principles with the ultimate objective of ensuring sustainability. All these data were transferred into the PNDB repository (Pole National de Données de Biodiversité, Biodiversity French Data Hub, https://www.pndb.fr).In the Agoa sanctuary and surrounding waters, marine mammals have to interact with increasing anthropogenic pressure from growing human activities. In this context, the Kakila database fulfils the need for an organised system to structure marine mammal occurrences collected by multiple local stakeholders with a common objective: contribute to the knowledge and conservation of cetaceans living in the French Antilles waters. Much needed data analysis will enable to identify high cetacean presence areas, to document the presence of rarer species, and to determine areas of possible negative interactions with anthropogenic activities.
Published: 2021

38. Importance of grey mullets on coastal food webs in a context of omega-3 deficiency: from sub-individual level to trophic dynamics

Author: Bourdaud, Pierre, Lassalle, Géraldine, Niquil, Nathalie, Vagner, Marie, Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Ecosystèmes aquatiques et changements globaux (UR EABX), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Région Bretagne - AAP SAD 'stratégie d'attractivité durable', Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)
Subjects: [SDE]Environmental Sciences, ComputingMilieux_MISCELLANEOUS
Abstract: International audience
Published: 2021

39. Revisiting species and areas of interest for conserving global mammalian phylogenetic diversity

Author: Roseli Pellens, Grégoire Dubois, Giacomo Delli, Daniel P. Faith, Simon Veron, Marine Robuchon, Boris Leroy, Andrea Mandrici, Sandrine Pavoine, European Commission - Joint Research Centre [Ispra] (JRC), Centre d'Ecologie et des Sciences de la COnservation (CESCO), Muséum national d'Histoire naturelle (MNHN)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Australian Museum [Sydney], Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE), Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Subjects: 0106 biological sciences, 0301 basic medicine, 2019-20 coronavirus outbreak, Conservation of Natural Resources, Coronavirus disease 2019 (COVID-19), Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Science, Biodiversity, General Physics and Astronomy, EDGE of Existence programme, Extinction, Biological, 010603 evolutionary biology, 01 natural sciences, General Biochemistry, Genetics and Molecular Biology, Article, Africa, Southern, 03 medical and health sciences, Madagascar, Animals, Environmental planning, Asia, Southeastern, Phylogeny, 2. Zero hunger, Mammals, Multidisciplinary, Extinction, Ecology, Conservation biology, fungi, Endangered Species, General Chemistry, 15. Life on land, Priority areas, Biological Evolution, Phylogenetic diversity, 030104 developmental biology, Geography, Biogeography, 13. Climate action, [SDE]Environmental Sciences, Asia, Central
Abstract: Various prioritisation strategies have been developed to cope with accelerating biodiversity loss and limited conservation resources. These strategies could become more engaging for decision-makers if they reflected the positive effects conservation can have on future projected biodiversity, by targeting net positive outcomes in future projected biodiversity, rather than reflecting the negative consequences of further biodiversity losses only. Hoping to inform the post-2020 biodiversity framework, we here apply this approach of targeting net positive outcomes in future projected biodiversity to phylogenetic diversity (PD) to re-identify species and areas of interest for conserving global mammalian PD. We identify priority species/areas as those whose protection would maximise gains in future projected PD. We also identify loss-significant species/areas as those whose/where extinction(s) would maximise losses in future projected PD. We show that our priority species/areas differ from loss-significant species/areas. While our priority species are mostly similar to those identified by the EDGE of Existence Programme, our priority areas generally differ from previously-identified ones for global mammal conservation. We further highlight that these newly-identified species/areas of interest currently lack protection and offer some guidance for their future management., How can we best conserve the evolutionary heritage of our planet? Focusing on mammals, this study identifies the species and areas across the globe for which conservation actions would be the most beneficial for future projected phylogenetic diversity and highlights that they currently lack protection.
Published: 2021

40. Fully Convolutional Neural Network: A solution to infer animal behaviours from multi-sensor data

Author: Vincent Vigon, Lorène Jeantet, Sebastien Geiger, Damien Chevallier, Département Ecologie, Physiologie et Ethologie (DEPE-IPHC), Institut Pluridisciplinaire Hubert Curien (IPHC), Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche Mathématique Avancée (IRMA), Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA), Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Centre National de la Recherche Scientifique (CNRS), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Centre National de la Recherche Scientifique (CNRS), Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Subjects: 0106 biological sciences, Artificial neural network, Computer science, business.industry, 010604 marine biology & hydrobiology, Ecological Modeling, Deep learning, [SDV]Life Sciences [q-bio], Process (computing), Sea turtle Ecology Behavioural classification Convolutional neural network, Accelerometer, Machine learning, computer.software_genre, 010603 evolutionary biology, 01 natural sciences, Convolutional neural network, Identification (information), Discriminative model, [SDE]Environmental Sciences, Segmentation, 14. Life underwater, Artificial intelligence, business, computer
Abstract: International audience; Animal-attached accelerometers have been widely used to monitor species that are difficult to observe, alongside the use of machine learning to identify behaviours from the obtained sequences. Artificial neural networks are powerful supervised learning algorithms that are based on deep learning and have been poorly exploited in movement ecology. Recently, the availability of sophisticated algorithmic architectures via open source libraries facilitates their use. In this study, we adapt a fully convolutional neural network that was originally developed for biomedical 3D image segmentation: the V-net. We test it on a labelled dataset collected from animal-borne video recorders combined with multi-sensors (accelerometers, gyroscopes and depth recorders) deployed on free-ranging immature green turtles (Chelonia mydas). The proposed model, fitted for 1D data, is able to predict six behavioural categories for green turtles with an AUC score of 88%. It shows a high ability to detect rare behaviours with low discriminative signals such as Feeding and Scratching. With a precision down to one centisecond, the V-net circumvents the segmentation process. We also show that the gyroscope is more informative than the accelerometer in identifying sea turtle behaviours and that the V-net is not able to discriminate Feeding from the raw data of accelerometer alone. However, human expertise can help to correct it with precise and adapted pre-processing. Thus, diverted from its initial purpose and tested on sea turtle, the V-net is a very efficient method of behavioural identification that should be easily generalized to a wide range of species. It could lead to considerable progress in remote accelerometric monitoring and help to understand the ecology of the species that are difficult to observe. Furthermore, as the model is light, there is also a huge potential to implement a trained V-net in satellite-relay data tag to remotely predict the expressed behaviours almost instantly.
Published: 2021

41. Effects of temperature and p CO 2 on the respiration, biomineralization and photophysiology of the giant clam Tridacna maxima

Author: Claire E. Lazareth, Claude Soyez, Chloé Brahmi, Nabila Gaertner-Mazouni, Jeremie Vidal-Dupiol, Gilles Le Moullac, Benoit Beliaeff, Leila Chapron, Université de la Polynésie Française (UPF), Ecosystèmes Insulaires Océaniens (UMR 241) (EIO), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de la Polynésie Française (UPF)-Institut Louis Malardé [Papeete] (ILM), Institut de Recherche pour le Développement (IRD), Laboratoire d'Ecogéochimie des environnements benthiques (LECOB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Banyuls (OOB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Interactions Hôtes-Pathogènes-Environnements (IHPE), Université de Perpignan Via Domitia (UPVD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Université de la Polynésie Française (UPF)-Institut Louis Malardé [Papeete] (ILM), Institut de Recherche pour le Développement (IRD)-Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), and Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Perpignan Via Domitia (UPVD)
Subjects: 0106 biological sciences, photosynthetic yield, Effects of global warming on oceans, Thermal stress, ocean acidification, Photosynthesis, 010603 evolutionary biology, 01 natural sciences, Acclimatization, chemistry.chemical_compound, Respiration, 14. Life underwater, Growth rate, symbionts, biology, Chemistry, 010604 marine biology & hydrobiology, giant clam, [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], Giant clam, biology.organism_classification, 13. Climate action, Environmental chemistry, Carbon dioxide, Seawater, respiration
Abstract: Such as many other reef organisms, giant clams are today confronted to global change effects and can suffer mass bleaching or mortality events mainly related to abnormally high seawater temperatures. Despite its strong ecological and socio-economical importance, its responses to the two most alarming threats linked to global change (i.e., ocean warming and acidification) still need to be explored. We investigated physiological responses of 4-years-oldTridacna maximaspecimens to realistic levels of temperature and partial pressure of carbon dioxide (pCO2) (+1.5°C and +800μatm of CO2) predicted for 2100 in French Polynesian lagoons during the warmer season. During a 65-days crossed-factor experiment, individuals were exposed to two temperatures (29.2°C; 30.7°C) and twopCO2(430µatm; 1212µatm) conditions. Impact of each parameter and their potential synergetic effect were evaluated on respiration, biomineralization and photophysiology. Kinetics of thermal and acidification stress were evaluated by performing measurements at different times of exposure (29, 41, 53, 65 days). At 30.7°C, the holobiont O2production, symbiont photosynthetic yield, and density were negatively impacted. HighpCO2had a significant negative effect on shell growth rate, symbiont photosynthetic yield and density. Shell microstructural modifications were observed from 41 days in all temperature andpCO2conditions. No significant synergetic effect was found. Today thermal conditions (29.2°C) appeared to be sufficiently stressful to induce a host acclimatization process. All these observations indicate that temperature andpCO2are both forcing variables affectingT. maximaphysiology and jeopardize its survival under environmental conditions predicted for the end of this century.
Published: 2021

42. Conservation of migratory fishes in the Amazon basin

Author: Leandro Castello, Edwin Agudelo, Carmen García Dávila, Aurea García Vásquez, Carolina Rodrigues da Costa Doria, Rivetla Edipo Araujo Cruz, Victoria J. Isaac, Marília Hauser, Jean-François Renno, Paul A. Van Damme, Elizabeth P. Anderson, Carlos E. C. Freitas, Ronaldo Borges Barthem, Fabrice Duponchelle, César Augusto Bonilla-Castillo, Theodore W. Hermann, Guido A. Herrera, Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD), Universidade Federal de Rondônia [Brésil] (UNIR), Instituto de Investigaciones de la Amazonía Peruana (IIAP), and Virginia Tech [Blacksburg]
Subjects: 0106 biological sciences, hydroelectric dams, threats, Ecology, [SDE.MCG]Environmental Sciences/Global Changes, 010604 marine biology & hydrobiology, Foundation (engineering), 15. Life on land, Aquatic Science, overexploitation, 010603 evolutionary biology, 01 natural sciences, societal importance, Fishery, Geography, fisheries management, 13. Climate action, 14. Life underwater, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Nature and Landscape Conservation, Amazon basin, biodiversity
Abstract: WOS:000630750300001; 1. The Amazon basin hosts the Earth's highest diversity of freshwater fish. Fish species have adapted to the basin's size and seasonal dynamics by displaying a broad range of migratory behaviour, but they are under increasing threats; however, no study to date has assessed threats and conservation of Amazonian migratory fishes. 2. Here, the available knowledge on the diversity of migratory behaviour in Amazonian fishes is synthesized, including the geographical scales at which they occur, their drivers and timing, and life stage at which they are performed. 3. Migratory fishes are integral components of Amazonian society. They contribute about 93% (range 77-99%) of the fisheries landings in the basin, amounting to -US\436 million annually. 4. These valuable fish populations are mainly threatened by growing trends of overexploitation, deforestation, climate change, and hydroelectric dam development. Most Amazonian migratory fish have key ecological roles as apex predators, ecological engineers, or seed-dispersal species. Reducing their population sizes could induce cascading effects with implications for ecosystem stability and associated services. 5. Conserving Amazonian migratory fishes requires a broad portfolio of research, management, and conservation actions, within an ecosystem-based management framework at the basin scale. This would require trans-frontier coordination and recognition of the crucial importance of freshwater ecosystems and their connectivity. 6. Existing areas where fishing is allowed could be coupled with a chain of freshwater protected areas. Management of commercial and subsistence species also needs fisheries activities to be monitored in the Amazonian cities and in the floodplain communities to allow assessments of the status of target species, and the identification of management units or stocks. Ensuring that existing and future fisheries management rules are effective implies the voluntary participation of fishers, which can be achieved by increasing the effectiveness and coverage of adaptive community-based management schemes.
Published: 2021

43. High and rising economic costs of biological invasions worldwide

Author: Boris Leroy, Jean-Michel Salles, Franck Courchamp, Corey J. A. Bradshaw, Ivan Jarić, Christophe Diagne, David Roiz, Anne-Charlotte Vaissière, Rodolphe E. Gozlan, Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC), Institut de Recherche pour le Développement (IRD [France-Sud])-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Leibniz-Institut für Gewässerökologie und Binnenfischerei (IGB), Leibniz Association, Centre d'Economie de l'Environnement - Montpellier - UMR 5211 (CEE-M), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Global Ecology, College of Science and Engineering, Flinders University, Flinders University [Adelaide, Australia], Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud]), Université Paris-Saclay, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Centre d'Economie de l'Environnement - Montpellier (CEE-M), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), École pratique des hautes études (EPHE), and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226
Subjects: 0106 biological sciences, Multidisciplinary, 010504 meteorology & atmospheric sciences, Natural resource economics, Biodiversity, 15. Life on land, [SHS.ECO]Humanities and Social Sciences/Economics and Finance, 010603 evolutionary biology, 01 natural sciences, [SHS]Humanities and Social Sciences, International policy, Economic cost, [SDE]Environmental Sciences, Business, Alien species, 0105 earth and related environmental sciences
Abstract: International audience; Biological invasions are responsible for substantial biodiversity declines as well as high economic losses to society and monetary expenditures associated with the management of these invasions1,2. The InvaCost database has enabled the generation of a reliable, comprehensive, standardized and easily updatable synthesis of the monetary costs of biological invasions worldwide3. Here we found that the total reported costs of invasions reached a minimum of US$1.288 trillion (2017 US dollars) over the past few decades (1970–2017), with an annual mean cost of US$26.8 billion. Moreover, we estimate that the annual mean cost could reach US$162.7 billion in 2017. These costs remain strongly underestimated and do not show any sign of slowing down, exhibiting a consistent threefold increase per decade. We show that the documented costs are widely distributed and have strong gaps at regional and taxonomic scales, with damage costs being an order of magnitude higher than management expenditures. Research approaches that document the costs of biological invasions need to be further improved. Nonetheless, our findings call for the implementation of consistent management actions and international policy agreements that aim to reduce the burden of invasive alien species.
Published: 2021

44. Rapport final des travaux liés à la convention 1078068

Author: Druet, Morgan, Rault, Pablo, Acou, Antony, Azam, Didier, Bardonnet, Agnes, Lasne, Emilien, Evanno, Guillaume, Feunteun, Eric, LAUNEY, Sophie, Lizé, Anne, Martignac, François, Nevoux, Marie, Prod’homme, Jordane, Emma, Robin, TEICHERT, Nils, Petit, Eric, Marchand, Frédéric, Unité Expérimentale d'Ecologie et d'Ecotoxicologie Aquatique - U3E (Rennes, France) (U3E ), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Patrimoine naturel (PatriNat), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)-Office français de la biodiversité (OFB), pôle OFB-INRAE- Agrocampus Ouest-UPPA pour la gestion des migrateurs amphihalins dans leur environnement, AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Université de Pau et des Pays de l'Adour (UPPA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Office français de la biodiversité (OFB), Ecologie Comportementale et Biologie des Populations de Poissons (ECOBIOP), Université de Pau et des Pays de l'Adour (UPPA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Écologie et santé des écosystèmes (ESE), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Agence de l'Eau Seine-Normandie (AESN), dans le cadre du Programme Sélune, Agence de l'Eau Seine-Normandie, Pôle OFB-INRAE- Agrocampus Ouest-UPPA pour la gestion des migrateurs amphihalins dans leur environnement, AGROCAMPUS OUEST-Université de Pau et des Pays de l'Adour (UPPA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Office français de la biodiversité (OFB), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)
Subjects: Sélune, [SDV.EE]Life Sciences [q-bio]/Ecology, environment
Published: 2021

45. Current and future climatic regions favourable for a globally introduced wild carnivore, the raccoon Procyon lotor

Author: Boris Leroy, Vivien Louppe, Anthony Herrel, Géraldine Veron, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Mécanismes Adaptatifs et Evolution (MECADEV), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)
Subjects: 0301 basic medicine, Conservation of Natural Resources, Range (biology), media_common.quotation_subject, Climate, Biome, Population Dynamics, Biodiversity, lcsh:Medicine, Generalist and specialist species, Models, Biological, Adaptability, Article, 03 medical and health sciences, 0302 clinical medicine, Animals, Carnivore, lcsh:Science, Ecosystem, media_common, Multidisciplinary, Invasive species, Ecology, Climate-change ecology, lcsh:R, 15. Life on land, Environmental niche modelling, 030104 developmental biology, Geography, 13. Climate action, Raccoons, lcsh:Q, Mesocarnivore, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Introduced Species, 030217 neurology & neurosurgery
Abstract: Invasive species are considered as one of the major threats to biodiversity and represent a major challenge in the conservation of natural ecosystems, in preventing damage to agricultural production, and human health risks. Environmental Niche Modelling has emerged as a powerful tool to predict the patterns of range expansion of non-native species and to direct effective strategies for managing biological invasions. The raccoon, Procyon lotor, is a wild mesocarnivore presenting a high adaptability and showing successful introduced populations worldwide. Here, we modelled the current and future climatically favourable areas for the raccoon using two protocols, based on data sets filtrated in geographic and environmental spaces. Projections from these models show extensive current favourable geographical areas covering extensive regions of temperate biomes. Moreover, predictions for 2050 reveals extensive new favourable areas north of the current favourable regions. However, the results of the two modeling approaches differ in the extent of predicted favourable spaces. Protocols using geographically filtered data present more conservative forecasts, while protocol using environmental filtration presents forecasts across greater areas. Given the biological characteristics and the ecological requirements of a generalist carnivore such as the raccoon, the latter forecasts appears more relevant and should be privileged in the development of conservation plans for ecosystems.
Published: 2019

46. Abnormal mortality of triploid adult Pacific oysters: Is there a correlation with high gametogenesis in Normandy, France?

Author: M. Houssin, Mélanie Lepoitevin, Elise Oden, Pierre-Hugues Pitel, Lucie Denechere, Suzanne Trancart, Béatrice Adeline, LABÉO, Pôle d’analyses et de recherche de Normandie (LABÉO), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Université de Caen Normandie (UNICAEN), and Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Subjects: [SDV]Life Sciences [q-bio], Zoology, Aquatic Science, Gametogenesis, 03 medical and health sciences, Aquaculture, crassostrea gigas, Triploi, 14. Life underwater, Mortality, reproductive and urinary physiology, Shellfish, 030304 developmental biology, 0303 health sciences, biology, business.industry, fungi, food and beverages, Aquatic animal, 04 agricultural and veterinary sciences, biology.organism_classification, Hatchery, Wild caught, 040102 fisheries, 0401 agriculture, forestry, and fisheries, Crassostrea, Ploidy, business
Abstract: International audience; Summer mortalities of the adult Pacific oysters Crassostrea gigas are an important economic concern. In 2015 and 2016, the mortality of hatchery origin spat comprising 4 diploid batches and 9 triploid batches as well as 12 batches of wild caught diploids was followed at 3 sites in Normandy. Abnormal mortalities (> 20%) were observed at one site only and were significantly higher in triploid animals (P < .05). Triploid oysters are believed to be partially sterile but a high level of gametogenesis was observed in all monitored triploid batches. In 2015, preliminary results revealed that triploid oysters underwent strong gametogenesis with mature gametes (stage 3) and 50% of them were non-perturbed (i.e. named alpha). In 2016, 42% of triploid oysters were alpha. This study revealed that triploid oyster maturation occurred in September, which corresponded to the time of high mortalities in Normandy.
Published: 2019

47. Towards coherent GES assessments at sub-regional level: signs of fisheries expansion processes in the Bay of Biscay using an OSPAR food web indicator, the mean trophic level

Author: Georges Safi, Nina Larissa Arroyo, Tarek Hattab, François Le Loc'h, Izaskun Preciado, Lucía López-López, Nathalie Niquil, Pauline Vouriot, Instituto Español de Oceanografía (IEO), Málaga., Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Centre National de la Recherche Scientifique (CNRS), Normandie Université (NU), Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE), Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement [IRD] : UMR237-Centre National de la Recherche Scientifique (CNRS), Station Marine d'Endoume, Université de la Méditerranée - Aix-Marseille 2, Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD), MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), and Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD)
Subjects: 0106 biological sciences, mean trophic level, Medio Marino y Protección Ambiental, Centro Oceanográfico de Santander, [SDE.MCG]Environmental Sciences/Global Changes, OSPAR indicators, Fishing, Aquatic Science, Oceanography, 010603 evolutionary biology, 01 natural sciences, Demersal zone, Ecosystem, 14. Life underwater, MSFD, Ecology, Evolution, Behavior and Systematics, Trophic level, Ecology, fisheries expansion, ACL, 010604 marine biology & hydrobiology, Pelagic zone, Bay of Biscay, fishing through, [SDE.ES]Environmental Sciences/Environmental and Society, Food web, Fishery, Geography, environmental status, food webs, Survey data collection, ecology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Bay
Abstract: Using the Bay of Biscay (BoB) as a case study, we conducted a transnational assessment of the mean trophic level (MTL, Ospar FW4) indicator at sub-regional level, over the last three decades. Our results confirm the apparent recovery of BoB’s bentho-demersal system, as shown by trends in the MTL indicator based on survey data. However, they also point at a concomitant “fishing through” process where the apparent stability revealed by the MTL indicator based on landed catch data may be masking the expansion of demersal fisheries to deeper waters, and an over-exploitation of resources (particularly abundant pelagic species). Moreover, they show how the combined examination of independent surveys and fishery landings allows the identification of ecological trends in ecosystem studies. In addition, our results confirm that analysing MTL at various threshold levels helps discerning the causality of trends in this indicator, especially if analyses for pelagic and demersal species are run independently. Further studies, at smaller (i.e. local) spatial scales, need to be conducted to ascertain our results and suggest appropriate management strategies aimed at regulating fisheries expansions in the area., Sí
Published: 2019

48. Global economic costs of aquatic invasive alien species

Author: Ryan J. Wasserman, Andrew M. Kramer, Jane A. Catford, Christophe Diagne, Melina Kourantidou, Ross N. Cuthbert, Boris Leroy, Phillip J. Haubrock, Zarah Pattison, Tatenda Dalu, Elena Angulo, Rodolphe E. Gozlan, César Capinha, Franck Courchamp, Laura N. H. Verbrugge, Nigel G. Taylor, Franz Essl, Danish A. Ahmed, David Renault, Elizabeta Briski, Helmholtz Centre for Ocean Research [Kiel] (GEOMAR), Newcastle University [Newcastle], Institut de recherche de la Tour du Valat, Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Aalto University, Université Paris-Saclay, Ecologie Systématique et Evolution (ESE), AgroParisTech-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Gulf University for Science and Technology (GUST), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Universidade de Lisboa = University of Lisbon (ULISBOA), King‘s College London, University of Melbourne, South African Institute for Aquatic Biodiversity (SAIAB), National Research Foundation [South Africa] (NRF), University of Vienna [Vienna], Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), University of South Bohemia, Senckenberg Research Institute and Natural History Museum [Frankfurt], Senckenberg – Leibniz Institution for Biodiversity and Earth System Research - Senckenberg Gesellschaft für Naturforschung, Leibniz Association-Leibniz Association, Woods Hole Oceanographic Institution (WHOI), University of Southern Denmark (SDU), University of South Florida [Tampa] (USF), Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Rhodes University, Grahamstown, The authors acknowledge the French National Research Agency (ANR-14-CE02-0021) and the BNP-Paribas Foundation Climate Initiative for funding the InvaCost project that allowed the construction of the InvaCost database. The present work was conducted following a workshop funded by the AXA Research Fund Chair of Invasion Biology and is part of the AlienScenarios project funded by BiodivERsA and Belmont-Forum call 2018 on biodiversity scenarios. RNC is funded through a Humboldt Research Fellowship from the Alexander von Humboldt Foundation. DAA is funded by the Kuwait Foundation for the Advancement of Sciences (KFAS) (PR1914SM-01) and the Gulf University for Science and Technology (GUST) internal seed fund (187092). CD was funded by the BiodivERsA-Belmont Forum Project AlienScenarios (BMBF/PT DLR 01LC1807C). EA was funded by the AXA Research Fund Chair of Invasion Biology of University Paris Saclay. CC was supported by Portuguese National Funds through Fundação para a Ciência e a Tecnologia (CEECIND/02037/2017, UIDB/00295/2020 and UIDP/00295/2020). TD acknowledges funding from National Research Foundation (NRF_ZA) (Grant Number: 117700). FE appreciates funding by the Austrian Science Foundation (FWF project no I 4011-B32). AMK was supported by the NSF Macrosystems Biology program under grant 1834548. DR thanks InEE-CNRS who supports the French national network Biological Invasions (Groupement de Recherche InvaBio, 2014–2022)., ANR-14-CE02-0021,InvaCosts,Insectes envahissants et leurs couts pour la biodiversité, l'économie et la santé humaine(2014), Helsinki Institute of Sustainability Science (HELSUS), Department of Forest Sciences, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE), Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226, University of Helsinki, Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Universidade de Lisboa (ULISBOA), South African Institute for Aquatic Biodiversity, Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), Repositório da Universidade de Lisboa, Helmholtz-Zentrum für Ozeanforschung Kiel, Newcastle University, Research Institute for the Conservation of Mediterranean Wetlands, Water and Environmental Eng., Gulf University for Science and Technology, Muséum national d'histoire naturelle, Universidade de Lisboa, King’s College London, University of Mpumalanga, University of Vienna, Université de Montpellier, Senckenberg Gesellschaft für Naturforschung, Woods Hole Oceanographic Institution, University of South Florida, Universite de Rennes, Rhodes University, Department of Built Environment, and Aalto-yliopisto
Subjects: 010504 meteorology & atmospheric sciences, Natural resource economics, ERADICATION, Biodiversity, Distribution (economics), Introduced species, ECOSYSTEM SERVICES, 010501 environmental sciences, 01 natural sciences, THREATS, Ecosystem services, Economic cost, DRIVERS, freshwater, Waste Management and Disposal, RISK, SCIENCE, Pollution, Monetary impact, Geography, 1181 Ecology, evolutionary biology, brackish, 511 Economics, Brackish, monetary impact, InvaCost, Environmental Engineering, Resource (biology), Asia, Freshwater, Environmental Chemistry, Animals, Ecosystem, LAKE VICTORIA, 14. Life underwater, habitat biases, 0105 earth and related environmental sciences, Marine, business.industry, marine, 15. Life on land, ECOLOGICAL IMPACTS, PREVENTION, 13. Climate action, Habitat biases, Africa, North America, Damages, BIODIVERSITY, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, business, Introduced Species
Abstract: Much research effort has been invested in understanding ecological impacts of invasive alien species (IAS) across ecosystems and taxonomic groups, but empirical studies about economic effects lack synthesis. Using a comprehensive global database, we determine patterns and trends in economic costs of aquatic IAS by examining: (i) the distribution of these costs across taxa, geographic regions and cost types; (ii) the temporal dynamics of global costs; and (iii) knowledge gaps, especially compared to terrestrial IAS. Based on the costs recorded from the existing literature, the global cost of aquatic IAS conservatively summed to US$345 billion, with the majority attributed to invertebrates (62%), followed by vertebrates (28%), then plants (6%). The largest costs were reported in North America (48%) and Asia (13%), and were principally a result of resource damages (74%); only 6% of recorded costs were from management. The magnitude and number of reported costs were highest in the United States of America and for semi-aquatic taxa. Many countries and known aquatic alien species had no reported costs, especially in Africa and Asia. Accordingly, a network analysis revealed limited connectivity among countries, indicating disparate cost reporting. Aquatic IAS costs have increased in recent decades by several orders of magnitude, reaching at least US$23 billion in 2020. Costs are likely considerably underrepresented compared to terrestrial IAS; only 5% of reported costs were from aquatic species, despite 26% of known invaders being aquatic. Additionally, only 1% of aquatic invasion costs were from marine species. Costs of aquatic IAS are thus substantial, but likely underreported. Costs have increased over time and are expected to continue rising with future invasions. We urge increased and improved cost reporting by managers, practitioners and researchers to reduce knowledge gaps. Few costs are proactive investments; increased management spending is urgently needed to prevent and limit current and future aquatic IAS damages.
Published: 2021

49. First Assessment of the Benthic Meiofauna Sensitivity to Low Human-Impacted Mangroves in French Guiana

Author: Gilbert Franck, Claire Michelet, Guillaume Dirberg, Amonda El Houssainy, Isabelle Bihannic, Elisa Baldrighi, Emma Michaud, Baptiste Vivier, Romain Walcker, Cédric Hubas, Cécile Militon, Léa Sylvi, Aurélie Dufour, Justine Receveur, Ronan Jézéquel, Lars-Eric Heimbürger-Boavida, Daniela Zeppilli, Philippe Cuny, Dominique Lamy, Centre National de la Recherche Scientifique - CNRS (FRANCE), Institut National Polytechnique de Toulouse - Toulouse INP (FRANCE), Université Toulouse III - Paul Sabatier - UT3 (FRANCE), Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Station de Biologie Marine de Concarneau, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN), Muséum national d'Histoire naturelle (MNHN), Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Observatoire Midi-Pyrénées (OMP), Institut de Recherche pour le Développement (IRD)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France -Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT), Centre de documentation de recherche et d'expérimentations sur les pollutions accidentelles des eaux (Cedre), Cedre, ANR-10-LABX-0025,CEBA,CEnter of the study of Biodiversity in Amazonia(2010), European Project: 1166-39417,FEDER, Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Laboratoire Ecologie Fonctionnelle et Environnement (ECOLAB), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Observatoire Midi-Pyrénées (OMP), Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Météo France-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Centre National de la Recherche Scientifique (CNRS), and Université de Toulouse (UT)-Université de Toulouse (UT)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National d'Études Spatiales [Toulouse] (CNES)-Centre National de la Recherche Scientifique (CNRS)-Météo-France-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP)
Subjects: 0106 biological sciences, Meiobenthos, nematode, Biodiversité et Ecologie, Meiofauna, Biodiversity, Anthropogenic pressures, Biology, 010603 evolutionary biology, 01 natural sciences, Mangroves, Dominance (ecology), Ecosystem, 14. Life underwater, Trophic level, biodiversity, Nematode, Ecology, 010604 marine biology & hydrobiology, mangroves, Forestry, lcsh:QK900-989, 15. Life on land, South America, natural contamination, 13. Climate action, Benthic zone, meiofauna, Natural contamination, lcsh:Plant ecology, anthropogenic pressures, Mangrove, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Bioindicator
Abstract: International audience; Bioindicators assess the mangroves ecological state according to the types of pressures but they differ with the ecosystem’s specificities. We investigated benthic meiofauna diversity and structure within the low human-impacted mangroves in French Guiana (South America) in response to sediment variables with various distances to the main city. Contaminant’s concentrations differed among the stations, but they remained below toxicity guidelines. Meiofauna structure (Foraminifera, Kinorhyncha, Nematoda) however varied accordingly. Nematode’s identification brought details on the sediment’s quality. The opportunistic genus Paraethmolaimus (Jensen, 1994) strongly correlated to the higher concentrations of Hg, Pb. Anoxic sediments were marked by organic enrichment in pesticides, PCB, and mangrove litter products and dominance of two tolerant genus, Terschellingia (de Man, 1888) and Spirinia (Gerlach, 1963). In each of these two stations, we found many Desmodora individuals (de Man, 1889) with the presence of epibionts highlighting the nematodes decreased fitness and defenses. Oxic sediments without contaminants were distinguished by the sensitive genera Pseudocella (Filipjev, 1927) and a higher diversity of trophic groups. Our results suggested a nematodes sensitivity to low contaminants concentrations. Further investigations at different spatio-temporal scales and levels of deterioration, would be necessary to use of this group as bioindicator of the mangroves’ ecological status; Les bioindicateurs évaluent l'état écologique des mangroves en fonction des types de pressions mais ils diffèrent selon les spécificités de l'écosystème. Nous avons étudié la diversité et la structure de la méiofaune benthique dans des mangroves à faible impact humain en Guyane française (Amérique du Sud) en réponse à des variables sédimentaires et à différentes distances de la ville principale. Les concentrations de contaminants différaient selon les stations, mais elles restaient inférieures aux recommandations de toxicité. La structure de la méiofaune (Foraminifera, Kinorhyncha, Nematoda) a cependant varié en conséquence. L'identification des nématodes a apporté des détails sur la qualité des sédiments. Le genre opportuniste Paraethmolaimus (Jensen, 1994) était fortement corrélé aux concentrations plus élevées de Hg, Pb. Les sédiments anoxiques étaient marqués par un enrichissement organique en pesticides, PCB, et produits de la litière de mangrove et par la dominance de deux genres tolérants, Terschellingia (de Man, 1888) et Spirinia (Gerlach, 1963). Dans chacune de ces deux stations, nous avons trouvé de nombreux individus Desmodora (de Man, 1889) avec la présence d'épibiontes mettant en évidence la diminution de la fitness et des capacités de défense des nématodes. Les sédiments oxiques sans contaminants se distinguaient par la présence de genres sensibles Pseudocella (Filipjev, 1927) et une plus grande diversité de groupes trophiques. Nos résultats suggèrent une sensibilité des nématodes à de faibles concentrations de contaminants. Des études supplémentaires à différentes échelles spatio-temporelles et à différents niveaux de détérioration seraient nécessaires pour utiliser ce groupe comme bioindicateur de l'état écologique des mangroves.
Published: 2021

50. Electron & Biomass Dynamics of Cyanothece Under Interacting Nitrogen & Carbon Limitations

Author: Sophie Rabouille, Douglas A. Campbell, Takako Masuda, Tomáš Zavřel, Gábor Bernát, Lubos Polerecky, Kimberly Halsey, Meri Eichner, Eva Kotabová, Susanne Stephan, Martin Lukeš, Pascal Claquin, José Bonomi-Barufi, Ana Teresa Lombardi, Jan Červený, David J. Suggett, Mario Giordano, Jacco C. Kromkamp, Ondřej Prášil, Laboratoire d'océanographie de Villefranche (LOV), Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de la Mer de Villefranche (IMEV), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Océanographie Microbienne (LOMIC), Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Observatoire océanologique de Banyuls (OOB), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institute of Microbiology of the Czech Academy of Sciences [Prague, Czech Republic] (MBU / CAS), Czech Academy of Sciences [Prague] (CAS), Balaton Limnological Research Institute, Centre for Ecological Research [Budapest], Eötvös Loránd University (ELTE)-Hungarian Academy of Sciences (MTA)-Eötvös Loránd University (ELTE)-Hungarian Academy of Sciences (MTA), Utrecht University [Utrecht], Oregon State University (OSU), Max Planck Institute for Marine Microbiology, Max-Planck-Gesellschaft, Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Technical University of Berlin / Technische Universität Berlin (TU), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Universidade Federal de Santa Catarina = Federal University of Santa Catarina [Florianópolis] (UFSC), Universidade Federal de São Carlos [São Carlos] (UFSCar), University of Technology Sydney (UTS), Royal Netherlands Institute for Sea Research (NIOZ), Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire océanologique de Banyuls (OOB), Institute of Microbiology of the Czech Academy of Sciences (MBU / CAS), Hungarian Academy of Sciences (MTA)-Eötvös Loránd University (ELTE)-Hungarian Academy of Sciences (MTA)-Eötvös Loránd University (ELTE), Technische Universität Berlin (TU), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Geochemistry, and Bio-, hydro-, and environmental geochemistry
Subjects: 0106 biological sciences, 0301 basic medicine, Microbiology (medical), Biogeochemical cycle, food.ingredient, [SDV]Life Sciences [q-bio], Cyanothece, lcsh:QR1-502, Photosynthesis, 01 natural sciences, Microbiology, lcsh:Microbiology, 03 medical and health sciences, food, Nitrogen fixation, ddc:570, Dissolved organic carbon, Phytoplankton, 14. Life underwater, carbon limitation, 0502 Environmental Science and Management, 0503 Soil Sciences, 0605 Microbiology, Biomass (ecology), photosynthesis, light limitation, 030104 developmental biology, nitrogen fixation, Environmental chemistry, Crocosphaera subtropica, Environmental science, Diazotroph, 010606 plant biology & botany
Abstract: Marine diazotrophs are a diverse group with key roles in biogeochemical fluxes linked to primary productivity. The unicellular, diazotrophic cyanobacterium Cyanothece is widely found in coastal, subtropical oceans. We analyze the consequences of diazotrophy on growth efficiency, compared to NO3–-supported growth in Cyanothece, to understand how cells cope with N2-fixation when they also have to face carbon limitation, which may transiently affect populations in coastal environments or during blooms of phytoplankton communities. When grown in obligate diazotrophy, cells face the double burden of a more ATP-demanding N-acquisition mode and additional metabolic losses imposed by the transient storage of reducing potential as carbohydrate, compared to a hypothetical N2 assimilation directly driven by photosynthetic electron transport. Further, this energetic burden imposed by N2-fixation could not be alleviated, despite the high irradiance level within the cultures, because photosynthesis was limited by the availability of dissolved inorganic carbon (DIC), and possibly by a constrained capacity for carbon storage. DIC limitation exacerbates the costs on growth imposed by nitrogen fixation. Therefore, the competitive efficiency of diazotrophs could be hindered in areas with insufficient renewal of dissolved gases and/or with intense phytoplankton biomass that both decrease available light energy and draw the DIC level down.
Published: 2021

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