1. Inherited BRCA1 and RNF43 pathogenic variants in a familial colorectal cancer type X family
- Author
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Chan, JM, Clendenning, M, Joseland, S, Georgeson, P, Mahmood, K, Joo, JE, Walker, R, Como, J, Preston, S, Chai, SM, Chu, YL, Meyers, AL, Pope, BJ, Duggan, D, Fink, JL, Macrae, FA, Rosty, C, Winship, IM, Jenkins, MA, Buchanan, DD, Chan, JM, Clendenning, M, Joseland, S, Georgeson, P, Mahmood, K, Joo, JE, Walker, R, Como, J, Preston, S, Chai, SM, Chu, YL, Meyers, AL, Pope, BJ, Duggan, D, Fink, JL, Macrae, FA, Rosty, C, Winship, IM, Jenkins, MA, and Buchanan, DD
- Abstract
Genetic susceptibility to familial colorectal cancer (CRC), including for individuals classified as Familial Colorectal Cancer Type X (FCCTX), remains poorly understood. We describe a multi-generation CRC-affected family segregating pathogenic variants in both BRCA1, a gene associated with breast and ovarian cancer and RNF43, a gene associated with Serrated Polyposis Syndrome (SPS). A single family out of 105 families meeting the criteria for FCCTX (Amsterdam I family history criteria with mismatch repair (MMR)-proficient CRCs) recruited to the Australasian Colorectal Cancer Family Registry (ACCFR; 1998–2008) that underwent whole exome sequencing (WES), was selected for further testing. CRC and polyp tissue from four carriers were molecularly characterized including a single CRC that underwent WES to determine tumor mutational signatures and loss of heterozygosity (LOH) events. Ten carriers of a germline pathogenic variant BRCA1:c.2681_2682delAA p.Lys894ThrfsTer8 and eight carriers of a germline pathogenic variant RNF43:c.988 C > T p.Arg330Ter were identified in this family. Seven members carried both variants, four of which developed CRC. A single carrier of the RNF43 variant met the 2019 World Health Organization (WHO2019) criteria for SPS, developing a BRAF p.V600 wildtype CRC. Loss of the wildtype allele for both BRCA1 and RNF43 variants was observed in three CRC tumors while a LOH event across chromosome 17q encompassing both genes was observed in a CRC. Tumor mutational signature analysis identified the homologous recombination deficiency (HRD)-associated COSMIC signatures SBS3 and ID6 in a CRC for a carrier of both variants. Our findings show digenic inheritance of pathogenic variants in BRCA1 and RNF43 segregating with CRC in a FCCTX family. LOH and evidence of BRCA1-associated HRD supports the importance of both these tumor suppressor genes in CRC tumorigenesis.
- Published
- 2024