15 results on '"Chantel M. Charlebois"'
Search Results
2. Probabilistic comparison of gray and white matter coverage between depth and surface intracranial electrodes in epilepsy
- Author
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Daria Nesterovich Anderson, Chantel M. Charlebois, Elliot H. Smith, Amir M. Arain, Tyler S. Davis, and John D. Rolston
- Subjects
Medicine ,Science - Abstract
Abstract In this study, we quantified the coverage of gray and white matter during intracranial electroencephalography in a cohort of epilepsy patients with surface and depth electrodes. We included 65 patients with strip electrodes (n = 12), strip and grid electrodes (n = 24), strip, grid, and depth electrodes (n = 7), or depth electrodes only (n = 22). Patient-specific imaging was used to generate probabilistic gray and white matter maps and atlas segmentations. Gray and white matter coverage was quantified using spherical volumes centered on electrode centroids, with radii ranging from 1 to 15 mm, along with detailed finite element models of local electric fields. Gray matter coverage was highly dependent on the chosen radius of influence (RoI). Using a 2.5 mm RoI, depth electrodes covered more gray matter than surface electrodes; however, surface electrodes covered more gray matter at RoI larger than 4 mm. White matter coverage and amygdala and hippocampal coverage was greatest for depth electrodes at all RoIs. This study provides the first probabilistic analysis to quantify coverage for different intracranial recording configurations. Depth electrodes offer increased coverage of gray matter over other recording strategies if the desired signals are local, while subdural grids and strips sample more gray matter if the desired signals are diffuse.
- Published
- 2021
- Full Text
- View/download PDF
3. Corrigendum: LeGUI: A Fast and Accurate Graphical User Interface for Automated Detection and Anatomical Localization of Intracranial Electrodes
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Tyler S. Davis, Rose M. Caston, Brian Philip, Chantel M. Charlebois, Daria Nesterovich Anderson, Kurt E. Weaver, Elliot H. Smith, and John D. Rolston
- Subjects
MATLAB ,anatomical localization ,graphical user interface (GUI) ,electrocorticography (ECoG) ,software ,stereotactic electroencephalography (SEEG) ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2022
- Full Text
- View/download PDF
4. LeGUI: A Fast and Accurate Graphical User Interface for Automated Detection and Anatomical Localization of Intracranial Electrodes
- Author
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Tyler S. Davis, Rose M. Caston, Brian Philip, Chantel M. Charlebois, Daria Nesterovich Anderson, Kurt E. Weaver, Elliot H. Smith, and John D. Rolston
- Subjects
MATLAB ,anatomical localization ,graphical user interface (GUI) ,electrocorticography (ECoG) ,software ,stereotactic electroencephalography (SEEG) ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Accurate anatomical localization of intracranial electrodes is important for identifying the seizure foci in patients with epilepsy and for interpreting effects from cognitive studies employing intracranial electroencephalography. Localization is typically performed by coregistering postimplant computed tomography (CT) with preoperative magnetic resonance imaging (MRI). Electrodes are then detected in the CT, and the corresponding brain region is identified using the MRI. Many existing software packages for electrode localization chain together separate preexisting programs or rely on command line instructions to perform the various localization steps, making them difficult to install and operate for a typical user. Further, many packages provide solutions for some, but not all, of the steps needed for confident localization. We have developed software, Locate electrodes Graphical User Interface (LeGUI), that consists of a single interface to perform all steps needed to localize both surface and depth/penetrating intracranial electrodes, including coregistration of the CT to MRI, normalization of the MRI to the Montreal Neurological Institute template, automated electrode detection for multiple types of electrodes, electrode spacing correction and projection to the brain surface, electrode labeling, and anatomical targeting. The software is written in MATLAB, core image processing is performed using the Statistical Parametric Mapping toolbox, and standalone executable binaries are available for Windows, Mac, and Linux platforms. LeGUI was tested and validated on 51 datasets from two universities. The total user and computational time required to process a single dataset was approximately 1 h. Automatic electrode detection correctly identified 4362 of 4695 surface and depth electrodes with only 71 false positives. Anatomical targeting was verified by comparing electrode locations from LeGUI to locations that were assigned by an experienced neuroanatomist. LeGUI showed a 94% match with the 482 neuroanatomist-assigned locations. LeGUI combines all the features needed for fast and accurate anatomical localization of intracranial electrodes into a single interface, making it a valuable tool for intracranial electrophysiology research.
- Published
- 2021
- Full Text
- View/download PDF
5. Validating Patient-Specific Finite Element Models of Direct Electrocortical Stimulation
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Chantel M. Charlebois, David J. Caldwell, Sumientra M. Rampersad, Andrew P. Janson, Jeffrey G. Ojemann, Dana H. Brooks, Rob S. MacLeod, Christopher R. Butson, and Alan D. Dorval
- Subjects
direct electrocortical stimulation ,electrocorticography ,finite element modeling ,bioelectricity simulation ,patient-specific modeling ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Direct electrocortical stimulation (DECS) with electrocorticography electrodes is an established therapy for epilepsy and an emerging application for stroke rehabilitation and brain-computer interfaces. However, the electrophysiological mechanisms that result in a therapeutic effect remain unclear. Patient-specific computational models are promising tools to predict the voltages in the brain and better understand the neural and clinical response to DECS, but the accuracy of such models has not been directly validated in humans. A key hurdle to modeling DECS is accurately locating the electrodes on the cortical surface due to brain shift after electrode implantation. Despite the inherent uncertainty introduced by brain shift, the effects of electrode localization parameters have not been investigated. The goal of this study was to validate patient-specific computational models of DECS against in vivo voltage recordings obtained during DECS and quantify the effects of electrode localization parameters on simulated voltages on the cortical surface. We measured intracranial voltages in six epilepsy patients during DECS and investigated the following electrode localization parameters: principal axis, Hermes, and Dykstra electrode projection methods combined with 0, 1, and 2 mm of cerebral spinal fluid (CSF) below the electrodes. Greater CSF depth between the electrode and cortical surface increased model errors and decreased predicted voltage accuracy. The electrode localization parameters that best estimated the recorded voltages across six patients with varying amounts of brain shift were the Hermes projection method and a CSF depth of 0 mm (r = 0.92 and linear regression slope = 1.21). These results are the first to quantify the effects of electrode localization parameters with in vivo intracranial recordings and may serve as the basis for future studies investigating the neuronal and clinical effects of DECS for epilepsy, stroke, and other emerging closed-loop applications.
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- 2021
- Full Text
- View/download PDF
6. Three Alveolar Phenotypes Govern Lung Function in Murine Ventilator-Induced Lung Injury
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Bradford J. Smith, Gregory S. Roy, Alyx Cleveland, Courtney Mattson, Kayo Okamura, Chantel M. Charlebois, Katharine L. Hamlington, Michael V. Novotny, Lars Knudsen, Matthias Ochs, R. Duncan Hite, and Jason H. T. Bates
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ventilator-induced lung injury ,stereology ,pulmonary surfactant ,lung function ,alveolar mechanics ,Physiology ,QP1-981 - Abstract
Mechanical ventilation is an essential lifesaving therapy in acute respiratory distress syndrome (ARDS) that may cause ventilator-induced lung injury (VILI) through a positive feedback between altered alveolar mechanics, edema, surfactant inactivation, and injury. Although the biophysical forces that cause VILI are well documented, a knowledge gap remains in the quantitative link between altered parenchymal structure (namely alveolar derecruitment and flooding), pulmonary function, and VILI. This information is essential to developing diagnostic criteria and ventilation strategies to reduce VILI and improve ARDS survival. To address this unmet need, we mechanically ventilated mice to cause VILI. Lung structure was measured at three air inflation pressures using design-based stereology, and the mechanical function of the pulmonary system was measured with the forced oscillation technique. Assessment of the pulmonary surfactant included total surfactant, distribution of phospholipid aggregates, and surface tension lowering activity. VILI-induced changes in the surfactant included reduced surface tension lowering activity in the typically functional fraction of large phospholipid aggregates and a significant increase in the pool of surface-inactive small phospholipid aggregates. The dominant alterations in lung structure at low airway pressures were alveolar collapse and flooding. At higher airway pressures, alveolar collapse was mitigated and the flooded alveoli remained filled with proteinaceous edema. The loss of ventilated alveoli resulted in decreased alveolar gas volume and gas-exchange surface area. These data characterize three alveolar phenotypes in murine VILI: flooded and non-recruitable alveoli, unstable alveoli that derecruit at airway pressures below 5 cmH2O, and alveoli with relatively normal structure and function. The fraction of alveoli with each phenotype is reflected in the proportional changes in pulmonary system elastance at positive end expiratory pressures of 0, 3, and 6 cmH2O.
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- 2020
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7. Linking Ventilator Injury-Induced Leak across the Blood-Gas Barrier to Derangements in Murine Lung Function
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Bradford J. Smith, Elizabeth Bartolak-Suki, Bela Suki, Gregory S. Roy, Katharine L. Hamlington, Chantel M. Charlebois, and Jason H. T. Bates
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lung injury ,mechanical ventilation ,ARDS ,alveolar leak ,surfactant dysfunction ,Physiology ,QP1-981 - Abstract
Mechanical ventilation is vital to the management of acute respiratory distress syndrome, but it frequently leads to ventilator-induced lung injury (VILI). Understanding the pathophysiological processes involved in the development of VILI is an essential prerequisite for improving lung-protective ventilation strategies. The goal of this study was to relate the amount and nature of material accumulated in the airspaces to biomarkers of injury and the derecruitment behavior of the lung in VILI. Forty-nine BALB/c mice were mechanically ventilated with combinations of tidal volume and end-expiratory pressures to produce varying degrees of overdistension and atelectasis while lung function was periodically assessed. Total protein, serum protein, and E-Cadherin levels were measured in bronchoalveolar lavage fluid (BALF). Tissue injury was assessed by histological scoring. We found that both high tidal volume and zero positive end-expiratory pressure were necessary to produce significant VILI. Increased BALF protein content was correlated with increased lung derecruitability, elevated peak pressures, and histological evidence of tissue injury. Blood derived molecules were present in the BALF in proportion to histological injury scores and epithelial injury, reflected by E-Cadherin levels in BALF. We conclude that repetitive recruitment is an important factor in the pathogenesis of VILI that exacerbates injury associated with tidal overdistension. Furthermore, the dynamic mechanical behavior of the injured lung provides a means to assess both the degree of tissue injury and the nature and amount of blood-derived fluid and proteins that accumulate in the airspaces.
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- 2017
- Full Text
- View/download PDF
8. Using chronic recordings from a closed‐loop neurostimulation system to capture seizures across multiple thalamic nuclei
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Bornali Kundu, Amir Arain, Tyler Davis, Chantel M. Charlebois, and John D. Rolston
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General Neuroscience ,Neurology (clinical) - Published
- 2022
9. Patient‐specific structural connectivity informs outcomes of responsive neurostimulation for temporal lobe epilepsy
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Chantel M. Charlebois, Daria Nesterovich Anderson, Kara A. Johnson, Brian J. Philip, Tyler S. Davis, Blake J. Newman, Angela Y. Peters, Amir M. Arain, Alan D. Dorval, John D. Rolston, and Christopher R. Butson
- Subjects
Epilepsy ,Epilepsy, Temporal Lobe ,Neurology ,Humans ,Neurology (clinical) ,Gyrus Cinguli ,Magnetic Resonance Imaging ,Temporal Lobe ,Retrospective Studies - Abstract
Responsive neurostimulation is an effective therapy for patients with refractory mesial temporal lobe epilepsy. However, clinical outcomes are variable, few patients become seizure-free, and the optimal stimulation location is currently undefined. The aim of this study was to quantify responsive neurostimulation in the mesial temporal lobe, identify stimulation-dependent networks associated with seizure reduction, and determine if stimulation location or stimulation-dependent networks inform outcomes.We modeled patient-specific volumes of tissue activated and created probabilistic stimulation maps of local regions of stimulation across a retrospective cohort of 22 patients with mesial temporal lobe epilepsy. We then mapped the network stimulation effects by seeding tractography from the volume of tissue activated with both patient-specific and normative diffusion-weighted imaging. We identified networks associated with seizure reduction across patients using the patient-specific tractography maps and then predicted seizure reduction across the cohort.Patient-specific stimulation-dependent connectivity was correlated with responsive neurostimulation effectiveness after cross-validation (p = .03); however, normative connectivity derived from healthy subjects was not (p = .44). Increased connectivity from the volume of tissue activated to the medial prefrontal cortex, cingulate cortex, and precuneus was associated with greater seizure reduction.Overall, our results suggest that the therapeutic effect of responsive neurostimulation may be mediated by specific networks connected to the volume of tissue activated. In addition, patient-specific tractography was required to identify structural networks correlated with outcomes. It is therefore likely that altered connectivity in patients with epilepsy may be associated with the therapeutic effect and that utilizing patient-specific imaging could be important for future studies. The structural networks identified here may be utilized to target stimulation in the mesial temporal lobe and to improve seizure reduction for patients treated with responsive neurostimulation.
- Published
- 2022
10. Closed-loop neurostimulation for epilepsy leads to improved outcomes when stimulation episodes are delivered during periods with less epileptiform activity
- Author
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Daria Nesterovich Anderson, Chantel M. Charlebois, Elliot H. Smith, Tyler S. Davis, Angela Y. Peters, Blake J. Newman, Amir M. Arain, Karen S. Wilcox, Christopher R. Butson, and John D. Rolston
- Abstract
In patients with drug-resistant epilepsy, electrical stimulation of the brain in response to epileptiform activity can make seizures less frequent and debilitating. When effective, this therapy, known as closed-loop responsive neurostimulation (RNS), produces long-lasting changes in brain dynamics that correlate with clinical outcomes. Since periods with frequent epileptiform activity are less conducive to neuroplasticity, we hypothesize that stimulation timing, specifically stimulation during brain states with less epileptiform activity, is critical in driving long-term changes that restore healthy brain networks. To test this, we quantified stimulation episodes during low- and high-risk epochs—that is, stimulation during periods with a low or high risk of generating seizures and less or more epileptiform activity—in a cohort of 40 patients treated with RNS. Patients were categorized into three groups: super responders (>90% reduction, n=10), intermediate responders (≥ 50% reduction and ≤ 90% reduction), n=19, and poor responders (One Sentence SummaryIncreased stimulation during periods of reduced seizure risk corresponds with improved therapy in responsive neurostimulation for epilepsy.
- Published
- 2022
11. Probabilistic comparison of gray and white matter coverage between depth and surface intracranial electrodes in epilepsy: a patient-specific modeling and empirical study
- Author
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Amir M. Arain, Chantel M. Charlebois, Elliot H. Smith, John D. Rolston, Daria Nesterovich Anderson, and Tyler S. Davis
- Subjects
Surface (mathematics) ,White matter ,medicine.anatomical_structure ,Radius of influence ,Probabilistic logic ,medicine ,Intracranial electrodes ,Subdural electrodes ,Gray (horse) ,Intracranial Electroencephalography ,Geology ,Biomedical engineering - Abstract
ObjectiveThe objective of this study is to quantify the coverage of gray and white matter during intracranial electroencephalography in a cohort of epilepsy patients with surface and depth electrodes.MethodsWe included 65 patients with strip electrodes (n=12), strip and grid electrodes (n=24), strip, grid, and depth electrodes (n=7), or depth electrodes only (n=22) from the University of Utah spanning 2010-2020. Patient-specific imaging was used to generate probabilistic gray and white matter maps and atlas segmentations. The gray and white matter coverage was quantified based on spherical volumes centered on electrode centroids, with radii ranging from 1-15 mm, along with detailed finite element models of local electric fieldsResultsGray matter coverage was highly dependent on the chosen radius of influence (RoI). Using a 2.5 mm RoI, depth electrodes covered more gray matter than surface electrodes; however, surface electrodes covered more gray matter at RoI larger than 4 mm. White matter coverage was greatest for depth electrodes at all RoIs, which is noteworthy for studies involving stimulation mapping. Depth electrodes were able to record significantly more gray matter from the amygdala and hippocampus than subdural electrodes.SignificanceThis study provides the first probabilistic analysis to quantify gray and white matter coverage for multiple categories of intracranial recording configurations. Depth electrodes may offer increased per contact coverage of gray matter over other recording strategies if the desired signals are local to the contact, while subdural grids and strips can sample more gray matter if the desired signals are more diffuse.
- Published
- 2021
12. Uncertainty Quantification in Brain Stimulation using UncertainSCI
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Lindsay C Rupp, Rob S. MacLeod, Jake A. Bergquist, Dana H. Brooks, Akil Narayan, Zexin Liu, Dan White, Jess D. Tate, Sumientra Rampersad, and Chantel M. Charlebois
- Subjects
business.industry ,General Neuroscience ,Brain stimulation ,Biophysics ,Medicine ,Neurosciences. Biological psychiatry. Neuropsychiatry ,Neurology (clinical) ,Uncertainty quantification ,business ,Neuroscience ,RC321-571 - Published
- 2021
13. Linking Lung Function to Structural Damage of Alveolar Epithelium in Ventilator-Induced Lung Injury
- Author
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Bradford J. Smith, Chantel M. Charlebois, Jason H. T. Bates, Gregory S. Roy, Celia M. Dunn, and Katharine L. Hamlington
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Pulmonary and Respiratory Medicine ,Pathology ,medicine.medical_specialty ,Physiology ,medicine.medical_treatment ,Alveolar Epithelium ,Ventilator-Induced Lung Injury ,030204 cardiovascular system & hematology ,Lung injury ,Article ,03 medical and health sciences ,Plateau pressure ,0302 clinical medicine ,medicine ,Tidal Volume ,Animals ,Tidal volume ,Lung function ,Mechanical ventilation ,Mice, Inbred BALB C ,Alveolar type ,business.industry ,General Neuroscience ,Respiration ,respiratory system ,Epithelium ,respiratory tract diseases ,Respiratory Function Tests ,Disease Models, Animal ,medicine.anatomical_structure ,030228 respiratory system ,Alveolar Epithelial Cells ,Linear Models ,Microscopy, Electron, Scanning ,Female ,business - Abstract
Understanding how the mechanisms of ventilator-induced lung injury (VILI), namely atelectrauma and volutrauma, contribute to the failure of the blood-gas barrier and subsequent intrusion of edematous fluid into the airspace is essential for the design of mechanical ventilation strategies that minimize VILI. We ventilated mice with different combinations of tidal volume and positive end-expiratory pressure (PEEP) and linked degradation in lung function measurements to injury of the alveolar epithelium observed via scanning electron microscopy. Ventilating with both high inspiratory plateau pressure and zero PEEP was necessary to cause derangements in lung function as well as visually apparent physical damage to the alveolar epithelium of initially healthy mice. In particular, the epithelial injury was tightly associated with indicators of alveolar collapse. These results support the hypothesis that mechanical damage to the epithelium during VILI is at least partially attributed to atelectrauma-induced damage of alveolar type I epithelial cells.
- Published
- 2018
14. Alveolar leak develops by a rich-get-richer process in ventilator-induced lung injury
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Katharine L. Hamlington, Bradford J. Smith, Béla Suki, Gregory S. Roy, Jason H. T. Bates, Chantel M. Charlebois, and Adele J Julianelle
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0301 basic medicine ,Leak ,ARDS ,Critical Care and Emergency Medicine ,Pulmonology ,medicine.medical_treatment ,Ventilator-Induced Lung Injury ,Cell Membranes ,Glycobiology ,lcsh:Medicine ,Pulmonary Function ,02 engineering and technology ,Biochemistry ,Mechanical Treatment of Specimens ,Pulmonary function testing ,Mice ,Medicine and Health Sciences ,lcsh:Science ,Glucans ,Cell Disruption ,Acute Respiratory Distress Syndrome ,Lung ,Mice, Inbred BALB C ,Respiratory Distress Syndrome ,Multidisciplinary ,Physics ,Classical Mechanics ,respiratory system ,3. Good health ,medicine.anatomical_structure ,Specimen Disruption ,Physical Sciences ,Breathing ,Cardiology ,Mechanical Stress ,Cellular Structures and Organelles ,Research Article ,medicine.medical_specialty ,0206 medical engineering ,Perforation (oil well) ,Materials Science ,Material Properties ,Lung injury ,Research and Analysis Methods ,Permeability ,03 medical and health sciences ,Respiratory Failure ,Polysaccharides ,Internal medicine ,medicine ,Animals ,Dextran ,Mechanical ventilation ,Damage Mechanics ,business.industry ,lcsh:R ,Biology and Life Sciences ,Pulmonary Surfactants ,Cell Biology ,medicine.disease ,020601 biomedical engineering ,Respiration, Artificial ,030104 developmental biology ,Specimen Preparation and Treatment ,lcsh:Q ,business - Abstract
Acute respiratory distress syndrome (ARDS) is a life-threatening condition for which there are currently no medical therapies other than supportive care involving the application of mechanical ventilation. However, mechanical ventilation itself can worsen ARDS by damaging the alveolocapillary barrier in the lungs. This allows plasma-derived fluid and proteins to leak into the airspaces of the lung where they interfere with the functioning of pulmonary surfactant, which increases the stresses of mechanical ventilation and worsens lung injury. Once such ventilator-induced lung injury (VILI) is underway, managing ARDS and saving the patient becomes increasingly problematic. Maintaining an intact alveolar barrier thus represents a crucial management goal, but the biophysical processes that perforate this barrier remain incompletely understood. To study the dynamics of barrier perforation, we subjected initially normal mice to an injurious ventilation regimen that imposed both volutrauma (overdistension injury) and atelectrauma (injury from repetitive reopening of closed airspaces) on the lung, and observed the rate at which macromolecules of various sizes leaked into the airspaces as a function of the degree of overall injury. Computational modeling applied to our findings suggests that perforations in the alveolocapillary barrier appear and progress according to a rich-get-richer mechanism in which the likelihood of a perforation getting larger increases with the size of the perforation. We suggest that atelectrauma causes the perforations after which volutrauma expands them. This mechanism explains why atelectrauma appears to be essential to the initiation of VILI in a normal lung, and why atelectrauma and volutrauma then act synergistically once VILI is underway.
- Published
- 2018
15. Linking Ventilator Injury-Induced Leak across the Blood-Gas Barrier to Derangements in Murine Lung Function
- Author
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Elizabeth Bartolak-Suki, Katharine L. Hamlington, Bradford J. Smith, Gregory S. Roy, Béla Suki, Chantel M. Charlebois, and Jason H. T. Bates
- Subjects
0301 basic medicine ,ARDS ,Pathology ,medicine.medical_specialty ,Physiology ,medicine.medical_treatment ,Atelectasis ,Lung injury ,mechanical ventilation ,lcsh:Physiology ,03 medical and health sciences ,0302 clinical medicine ,Physiology (medical) ,medicine ,surfactant dysfunction ,lung injury ,Tidal volume ,Original Research ,Mechanical ventilation ,Lung ,medicine.diagnostic_test ,lcsh:QP1-981 ,business.industry ,respiratory system ,medicine.disease ,alveolar leak ,respiratory tract diseases ,030104 developmental biology ,Bronchoalveolar lavage ,medicine.anatomical_structure ,030228 respiratory system ,Breathing ,business - Abstract
Mechanical ventilation is vital to the management of acute respiratory distress syndrome, but it frequently leads to ventilator-induced lung injury (VILI). Understanding the pathophysiological processes involved in the development of VILI is an essential prerequisite for improving lung-protective ventilation strategies. The goal of this study was to relate the amount and nature of material accumulated in the airspaces to biomarkers of injury and the derecruitment behavior of the lung in VILI. Forty-nine BALB/c mice were mechanically ventilated with combinations of tidal volume and end-expiratory pressures to produce varying degrees of overdistension and atelectasis while lung function was periodically assessed. Total protein, serum protein, and E-Cadherin levels were measured in bronchoalveolar lavage fluid (BALF). Tissue injury was assessed by histological scoring. We found that both high tidal volume and zero positive end-expiratory pressure were necessary to produce significant VILI. Increased BALF protein content was correlated with increased lung derecruitability, elevated peak pressures, and histological evidence of tissue injury. Blood derived molecules were present in the BALF in proportion to histological injury scores and epithelial injury, reflected by E-Cadherin levels in BALF. We conclude that repetitive recruitment is an important factor in the pathogenesis of VILI that exacerbates injury associated with tidal overdistension. Furthermore, the dynamic mechanical behavior of the injured lung provides a means to assess both the degree of tissue injury and the nature and amount of blood-derived fluid and proteins that accumulate in the airspaces.
- Published
- 2017
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