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Strong early growth vigor is an essential target in both direct seeded rice breeding and high-yielding rice breeding for rice varieties with relatively short growth duration in the double-cropping region. Shoot dry weight (SDW) is one of the important traits associated with early growth vigor, and breeders have been working to improve this trait. Finding stable QTLs or functional genes for SDW is crucial for improving the early growth vigor by implementing molecular breeding in rice. Here, a genome-wide association analysis revealed that the QTL for SDW, qSDW-5, was stably detected in the three cultivation methods commonly used in production practice. Through gene-based haplotype analysis of the annotated genes within the putative region of qSDW-5, and validated by gene expression and knockout transgenic experiments, LOC_Os05g09520, which is identical to the reported GW5/GSE5 controlling grain width (GW) and thousand grain weight (TGW) was identified as the causal gene for qSDW-5. Five main haplotypes of LOC_Os05g09520 were identified in the diverse international rice collection used in this study and their effects on SDW, GW and TGW were analyzed. Phenotypic comparisons of the major haplotypes of LOC_Os05g09520 in the three subpopulations (indica, japonica and aus) revealed the same patterns of wider GW and higher TGW along with higher SDW. Furtherly, the haplotype analysis of 138 rice varieties/lines widely used in southern China showed that 97.8% of the cultivars/lines carry Hap2LOC_Os05g09520. These results not only provide a promising gene source for the molecular breeding of rice varieties with strong early growth vigor, but also elucidate the effect of the LOC_Os05g09520 haplotypes on SDW, GW, and TGW in rice. Importantly, this study provides direct genetic evidence that these three traits are significantly correlated, and suggests a breeding strategy for developing high-yielding and slender grain-shaped indica cultivars with strong early growth vigor. [ABSTRACT FROM AUTHOR]

Non-methane volatile organic compounds (NMVOC), serving as crucial precursors of O3 , have a significant impact on atmospheric oxidative capacity and O3 formation. However, both anthropogenic and biogenic NMVOC emissions remain subject to considerable uncertainty. Here, we extended the Regional multi-Air Pollutant Assimilation System (RAPAS) using the ensemble Kalman filter (EnKF) algorithm to optimize NMVOC emissions in China in August 2022 by assimilating TROPOspheric Monitoring Instrument (TROPOMI) HCHO retrievals. We also simultaneously optimize NOx emissions by assimilating in situ NO2 observations to address the chemical feedback among VOCs– NOx – O3. Furthermore, a process-based analysis was employed to quantify the impact of NMVOC emission changes on various chemical reactions related to O3 formation and depletion. NMVOC emissions exhibited a substantial reduction of 50.2 %, especially in the middle and lower reaches of the Yangtze River, revealing a prior overestimation of biogenic NMVOC emissions due to an extreme heat wave. Compared to the forecast with prior NMVOC emissions, the forecast with posterior emissions significantly improved HCHO simulations, reducing biases by 75.7 %, indicating a notable decrease in posterior emission uncertainties. The forecast with posterior emissions also effectively corrected the overestimation of O3 in forecasts with prior emissions, reducing biases by 49.3 %. This can be primarily attributed to a significant decrease in the RO2+NO reaction rate and an increase in the NO2+OH reaction rate in the afternoon, thus limiting O3 generation. Sensitivity analyses emphasized the necessity of considering both NMVOC and NOx emissions for a comprehensive assessment of O3 chemistry. This study enhances our understanding of the effects of NMVOC emissions on O3 production and can contribute to the development of effective emission reduction policies. [ABSTRACT FROM AUTHOR]

Non-methane volatile organic compounds (NMVOC), serving as crucial precursors of O3, have a significant impact on atmospheric oxidative capacity and O3 formation. However, both anthropogenic and biogenic NMVOC emissions remain subject to considerable uncertainty. Here, we extended the Regional multi-Air Pollutant Assimilation System (RAPAS) with the EnKF algorithm to optimize NMVOC emissions in China by assimilating TROPOMI HCHO retrievals. We also simultaneously optimize NO x emissions by assimilating in-situ NO2 observations to address the chemical feedback among VOC-NO x -O3. Furthermore, a process-based analysis was employed to quantify the impact of NMVOC emission changes on various chemical reactions related to O3 formation and depletion. NMVOC emissions exhibited a substantial reduction of 50.2 %, especially in forest-rich areas of central and southern China, revealing a prior overestimation of biogenic NMVOC emissions. The RAPAS significantly improved HCHO simulations, reducing biases by 75.7 %, indicating a notable decrease in posterior emission uncertainties. Moreover, the posterior NMVOC emissions significantly corrected the prior overestimation in O3 simulations, reducing biases by 49.3 %. This can be primarily attributed to a significant decrease in the RO2 + NO reaction rate and an increase in the NO2 + OH reaction rate in the afternoon, thus limiting O3 generation. Sensitivity analyses emphasized the necessity of considering both NMVOC and NO x emissions for a comprehensive assessment of O3 chemistry. This study enhances our understanding of the effects of NMVOC emissions on O3 production and can contribute to the development of effective emission reduction policies. [ABSTRACT FROM AUTHOR]