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Your search keyword '"Cherry, J.M."' showing total 9 results
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9 results on '"Cherry, J.M."'

2. Making linked data SPARQL with the InterMine biological data warehouse

Author

Déraspe, M., Binkley, G., Butano, D., Chadwick, M., Cherry, J.M., Clark-Casey, J., Contrino, S., Corbeil, Jacques, Heimbach, J., Karra, K., Lyne, R., Sullivan, J., Yehudi, Y., Micklem, G., Dumontier, M., Déraspe, M., Binkley, G., Butano, D., Chadwick, M., Cherry, J.M., Clark-Casey, J., Contrino, S., Corbeil, Jacques, Heimbach, J., Karra, K., Lyne, R., Sullivan, J., Yehudi, Y., Micklem, G., and Dumontier, M.

Abstract

InterMine is a system for integrating, analysing, and republishing biological data from multiple sources. It provides access to these data via a web user interface and programmatic web services. However, the precise invocation of services and subsequent exploration of returned data require substantial expertise on the structure of the underlying database. Here, we describe an approach that uses Semantic Web technologies to make InterMine data more broadly accessible and reusable, in accordance with the FAIR principles. We describe a pipeline to extract, transform, and load a Linked Data representation of the InterMine store. We use Docker to bring together SPARQL-aware applications to search, browse, explore, and query the InterMine-based data. Our work therefore extends interoperability of the InterMine platform, and supports new query functionality across InterMine installations and the network of open Linked Data.

Published
2016

3. Linkage map of Arabidopsis thaliana 2N = 10

Author

Koornneef, M., Chang, C., Goodman, H.M., Hanley, S., Cartinhour, S., Cherry, J.M., Hauge, B.M., Kempin, S., Medrano, L., Meyerowitz, E.M., and Stam, P.

Subjects
Life Science, Laboratory of Genetics, Laboratorium voor Erfelijkheidsleer
Published
1993

6. DNA Termini in Ciliate Macronuclei

Author

Blackburn, E.H., primary, Budarf, M.L., additional, Challoner, P.B., additional, Cherry, J.M., additional, Howard, E.A., additional, Katzen, A.L., additional, Pan, W.-C., additional, and Ryan, T., additional

Published
1983
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8. Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data

Author

Ball, C.A., Jin, H., Sherlock, G., Weng, S., Matese, J.C., Andrada, R., Binkley, G., Dolinski, K., Dwight, S.S., Harris, M.A., Issel-Tarver, L., Schroeder, M., Botstein, D., and Cherry, J.M.

Abstract

Upon the completion of the Saccharomyces cerevisiae genomic sequence in 1996 [Goffeau,A. et al. (1997) Nature, 387, 5], several creative and ambitious projects have been initiated to explore the functions of gene products or gene expression on a genome-wide scale. To help researchers take advantage of these projects, the Saccharomyces Genome Database (SGD) has created two new tools, Function Junction and Expression Connection. Together, the tools form a central resource for querying multiple large-scale analysis projects for data about individual genes. Function Junction provides information from diverse projects that shed light on the role a gene product plays in the cell, while Expression Connection delivers information produced by the ever-increasing number of microarray projects. WWW access to SGD is available at genome-www.stanford.edu/Saccharomyces/.

Published
2001

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