19 results on '"Chirakkal H"'
Search Results
2. Organic Chromium Supplementation Modulates the Serum Corticosterone Response to Heat Stress in Wistar Albino Rats
- Author
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Rajalekshmi, M., Ravichandran, M., Sripathy, R., Chirakkal, H., and Rajendran, D.
- Published
- 2012
3. Upregulation of BAK by butyrate in the colon is associated with increased Sp3 binding
- Author
-
Chirakkal, H, Leech, S H, Brookes, K E, Prais, A L, Waby, J S, and Corfe, B M
- Published
- 2006
- Full Text
- View/download PDF
4. Analysis of a conserved hydrophobic pocket important for the thermostability of Bacillus pumilus chloramphenicol acetyltransferase (CAT-86)
- Author
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Chirakkal, H., Ford, G.C., and Moir, A.
- Published
- 2001
5. Butyrate suppresses expression of neuropilin I in colorectal cell lines through inhibition of Sp1 transactivation.
- Author
-
Yu, DC, Waby, JS, Chirakkal, H, Staton, CA, Corfe, BM, Yu, DC, Waby, JS, Chirakkal, H, Staton, CA, and Corfe, BM
- Abstract
BACKGROUND: Neuropilin is a transmembrane receptor for vascular endothelial growth factor (VEGF) and is expressed in normal endothelial cells and upregulated in cancer cells. Neuropilin-1 (NRP-1) has been shown to promote tumour cell migration and survival in colon cancer in response to VEGF binding. The expression profiles of neuropilins, associated co-receptors and known ligands have been mapped in three colorectal cell lines: Caco-2, HCT116 & HT29. We have previously shown that butyrate, a naturally occurring histone deacetylase inhibitor (HDACi) produced by fermentation of fibre in the colon, causes apoptosis of colon cancer cell lines. RESULTS: Here we demonstrate that butyrate down-regulates NRP-1 and VEGF at the mRNA and protein level in colorectal cancer cell lines. NRP-1 is a known transcriptional target of Sp1, whose activity is regulated by acetylation. NRP-1 down-regulation by butyrate was associated with decreased binding affinity of Sp1 for canonical Sp-binding sites in the NRP-1 promoter. siRNA-mediated knock-down of Sp1 implied that Sp1 may have strong DNA binding activity but weak transactivation potential. CONCLUSION: The downregulation of the key apoptotic and angiogenesis regulator NRP-1 by butyrate suggests a novel contributory mechanism to the chemopreventive effect of dietary fibre.
- Published
- 2010
6. Sp1 acetylation is associated with loss of DNA binding at promoters associated with cell cycle arrest and cell death in a colon cell line.
- Author
-
Waby, JS, Chirakkal, H, Yu, C, Griffiths, GJ, Benson, RS, Bingle, CD, Corfe, BM, Waby, JS, Chirakkal, H, Yu, C, Griffiths, GJ, Benson, RS, Bingle, CD, and Corfe, BM
- Abstract
Butyrate, a known histone deacetylase inhibitor (HDACi) and product of fibre fermentation, is postulated to mediate the protective effect of dietary fibre against colon cancer. The transcription factor Sp1 is a target of acetylation and is known to be associated with class I HDACs, including HDAC1. Sp1 is a ubiquitous transcription factor and Sp1-regulated genes include those involved in cell cycle regulation, apoptosis and lipogenesis: all major pathways in cancer development. The only known acetylated residue of Sp1 is lysine703 which resides in the DNA binding domain. Here we show that acetylated Sp1 loses p21- and bak-promoter -binding function in vitro. Furthermore treatment with a panel of HDAC inhibitors showed clustering of activities for a subset of inhibitors, causing G2 cell cycle arrest, Sp1 acetylation, p21 and Bak over-expression, all with very similar EC50 concentrations. These HDACi activities were not distributed according to the molecular class of compound. In order to mimic loss of binding, an siRNA strategy was used to reduce Sp1 expression. This resulted in altered expression of multiple elements of the p53/p21 pathway. Taken together our data suggest a mechanistic model for the chemopreventive actions of butyrate in colon epithelial cells, and provide new insight into the differential activities some classes of HDAC inhibitors.
- Published
- 2010
7. Inheritance of Cry1F resistance, cross-resistance and frequency of resistant alleles inSpodoptera frugiperda(Lepidoptera: Noctuidae)
- Author
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Vélez, A.M., primary, Spencer, T.A., additional, Alves, A.P., additional, Moellenbeck, D., additional, Meagher, R.L., additional, Chirakkal, H., additional, and Siegfried, B.D., additional
- Published
- 2013
- Full Text
- View/download PDF
8. Inheritance of Cry1F resistance, cross-resistance and frequency of resistant alleles in Spodoptera frugiperda (Lepidoptera: Noctuidae).
- Author
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Vélez, A.M., Spencer, T.A., Alves, A.P., Moellenbeck, D., Meagher, R.L., Chirakkal, H., and Siegfried, B.D.
- Subjects
TRANSGENIC plants ,CORN genetics ,BACILLUS thuringiensis ,SPODOPTERA ,INSECTS - Abstract
Transgenic maize, Zea maize L., expressing the Cry1F protein from Bacillus thuringiensis has been registered for Spodoptera frugiperda (J. E. Smith) control since 2003. Unexpected damage to Cry1F maize was reported in 2006 in Puerto Rico and Cry1F resistance in S. frugiperda was documented. The inheritance of Cry1F resistance was characterized in a S. frugiperda resistant strain originating from Puerto Rico, which displayed >289-fold resistance to purified Cry1F. Concentration–response bioassays of reciprocal crosses of resistant and susceptible parental populations indicated that resistance is recessive and autosomal. Bioassays of the backcross of the F1 generation crossed with the resistant parental strain suggest that a single locus is responsible for resistance. In addition, cross-resistance to Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry2Aa and Vip3Aa was assessed in the Cry1F-resistant strain. There was no significant cross-resistance to Cry1Aa, Cry1Ba and Cry2Aa, although only limited effects were observed in the susceptible strain. Vip3Aa was highly effective against susceptible and resistant insects indicating no cross-resistance with Cry1F. In contrast, low levels of cross-resistance were observed for both Cry1Ab and Cry1Ac. Because the resistance is recessive and conferred by a single locus, an F1 screening assay was used to measure the frequency of Cry1F-resistant alleles from populations of Florida and Texas in 2010 and 2011. A total frequency of resistant alleles of 0.13 and 0.02 was found for Florida and Texas populations, respectively, indicating resistant alleles could be found in US populations, although there have been no reports of reduced efficacy of Cry1F-expressing plants. [ABSTRACT FROM PUBLISHER]
- Published
- 2013
- Full Text
- View/download PDF
9. Butyrate suppresses expression of neuropilin I in colorectal cell lines through inhibition of Sp1 transactivation
- Author
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Staton Carolyn A, Chirakkal Haridasan, Waby Jennifer S, Yu Danny CW, and Corfe Bernard M
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Neuropilin is a transmembrane receptor for vascular endothelial growth factor (VEGF) and is expressed in normal endothelial cells and upregulated in cancer cells. Neuropilin-1 (NRP-1) has been shown to promote tumour cell migration and survival in colon cancer in response to VEGF binding. The expression profiles of neuropilins, associated co-receptors and known ligands have been mapped in three colorectal cell lines: Caco-2, HCT116 & HT29. We have previously shown that butyrate, a naturally occurring histone deacetylase inhibitor (HDACi) produced by fermentation of fibre in the colon, causes apoptosis of colon cancer cell lines. Results Here we demonstrate that butyrate down-regulates NRP-1 and VEGF at the mRNA and protein level in colorectal cancer cell lines. NRP-1 is a known transcriptional target of Sp1, whose activity is regulated by acetylation. NRP-1 down-regulation by butyrate was associated with decreased binding affinity of Sp1 for canonical Sp-binding sites in the NRP-1 promoter. siRNA-mediated knock-down of Sp1 implied that Sp1 may have strong DNA binding activity but weak transactivation potential. Conclusion The downregulation of the key apoptotic and angiogenesis regulator NRP-1 by butyrate suggests a novel contributory mechanism to the chemopreventive effect of dietary fibre.
- Published
- 2010
- Full Text
- View/download PDF
10. Sp1 acetylation is associated with loss of DNA binding at promoters associated with cell cycle arrest and cell death in a colon cell line
- Author
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Griffiths Gareth J, Yu ChenWei, Chirakkal Haridasan, Waby Jennifer S, Benson Roderick SP, Bingle Colin D, and Corfe Bernard M
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Butyrate, a known histone deacetylase inhibitor (HDACi) and product of fibre fermentation, is postulated to mediate the protective effect of dietary fibre against colon cancer. The transcription factor Sp1 is a target of acetylation and is known to be associated with class I HDACs, including HDAC1. Sp1 is a ubiquitous transcription factor and Sp1-regulated genes include those involved in cell cycle regulation, apoptosis and lipogenesis: all major pathways in cancer development. The only known acetylated residue of Sp1 is lysine703 which resides in the DNA binding domain. Here we show that acetylated Sp1 loses p21- and bak-promoter -binding function in vitro. Furthermore treatment with a panel of HDAC inhibitors showed clustering of activities for a subset of inhibitors, causing G2 cell cycle arrest, Sp1 acetylation, p21 and Bak over-expression, all with very similar EC50 concentrations. These HDACi activities were not distributed according to the molecular class of compound. In order to mimic loss of binding, an siRNA strategy was used to reduce Sp1 expression. This resulted in altered expression of multiple elements of the p53/p21 pathway. Taken together our data suggest a mechanistic model for the chemopreventive actions of butyrate in colon epithelial cells, and provide new insight into the differential activities some classes of HDAC inhibitors.
- Published
- 2010
- Full Text
- View/download PDF
11. Assessment of H-β zeolite as an ochratoxin binder for poultry.
- Author
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Rajendran RM, Umesh B, and Chirakkal H
- Subjects
- Animals, Clay, Female, Male, Minerals administration & dosage, Zeolites administration & dosage, Animal Feed analysis, Chickens metabolism, Minerals metabolism, Ochratoxins metabolism, Zeolites metabolism
- Abstract
Most of the cereal-based ingredients used in poultry feed are contaminated with ochratoxin-A (OTA). We have investigated H-β zeolite (HBZ) as a new OTA binder for poultry, along with widely used clay mineral-based product (CM), using in vitro and in vivo methods. In vitro binding experiment was carried out using a biphasic assay, consisting of adsorption at pH 3.2 and desorption at pH 6.8. High adsorption (>98%) with less desorption (<5%) was observed for HBZ, whereas CM showed high binding (>98%) and moderate desorption (48%). In the in vitro experiments with the different simulated gastro-intestinal pH buffers, HBZ did not desorb OTA at any of the pH. Desorption of OTA was observed with CM, as the pH increases. From the in vitro kinetic and chemisorption studies, faster, stronger, and higher adsorption was observed for HBZ. Thermodynamic studies showed positive entropy (22.76 KJ/mol K) for HBZ, signifying predominant hydrophobic interactions towards OTA, whereas CM exhibited negative entropy (-3.67 KJ/mol K). The in vivo binding efficacy of HBZ and CM was tested in 5-wk-old broiler chickens. The study consisted of 4 experimental groups, each with 6 replicates having 2 birds per replicate. The groups were control, negative control (no toxin binder), T1 (HBZ at 1 kg/ton of feed), and T2(CM at 1 kg/ton of feed). Except control, all the replicates received 20 µg of OTA in the feed. Excreta samples of T1, T2, and NC contained 11.57, 7.16, and 2.78 µg of OTA respectively, which was significantly different from each other (P < 0.05). A growth performance trial was conducted in broiler chickens for 35 D. A total of 288 one-day-old birds were randomly segregated to 3 treatment groups, each with 8 replicates of 12 birds each. Treatment groups consisted of control, T1, and T2, treated with no toxin binder, HBZ, and CM at 1 kg/ton of feed, respectively. None of the treatment groups including control, affected BW gain, and feed conversion ratio (P > 0.05)., (Copyright © 2019 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
12. Bacillus subtilis PB6 improves intestinal health of broiler chickens challenged with Clostridium perfringens-induced necrotic enteritis.
- Author
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Jayaraman S, Thangavel G, Kurian H, Mani R, Mukkalil R, and Chirakkal H
- Subjects
- Animal Feed, Animals, Clostridium Infections parasitology, Clostridium Infections pathology, Clostridium Infections veterinary, Clostridium perfringens physiology, Coccidiosis parasitology, Coccidiosis pathology, Colony Count, Microbial veterinary, Dietary Supplements, Eimeria physiology, Enteritis parasitology, Enteritis pathology, Enteritis veterinary, Female, Gastrointestinal Contents microbiology, Intestines drug effects, Intestines microbiology, Intestines pathology, Male, Poultry Diseases parasitology, Poultry Diseases pathology, Bacillus subtilis metabolism, Chickens physiology, Clostridium Infections microbiology, Enteritis microbiology, Poultry Diseases microbiology, Probiotics administration & dosage
- Abstract
Necrotic enteritis (NE) is an enterotoxemic disease caused by Clostridium perfringens that results in significant economic losses, averaging damage of $0.05 per bird. The present study investigated the influence of a dietary supplement, Bacillus subtilis PB6, on performance, intestinal health, and gut integrity against C. perfringens-induced NE in broiler birds. Bacillus subtilis PB6 (ATCC-PTA 6737) is a natural strain isolated from healthy chicken gut that has been shown in in vitro to produce antimicrobial substances with broad activity against various strains of Campylobacter and Clostridium species. The animal study was conducted on broiler chickens (Cobb 400) for the period of 35 d using a completely randomized design. The experimental design included 3 treatments groups. Each treatment group contained 6 replicates, 3 male and 3 female, with 12 birds in each replicate. The 3 treatment groups were an uninfected control, an infected control, and an infected group supplemented with B. subtilis PB6 at 500 g/t of feed, containing 5 × 10(11) cfu/kg. Necrotic enteritis was induced in the broiler birds via oral inoculation of 30,000 oocysts of mixed strains of Eimeria species on d 14 followed by C. perfringens (10(8) cfu/mL) on d 19 through 21 of trial. The birds were analyzed for BW gain, mortality, feed conversion ratio (FCR), intestinal lesion score, intestinal C. perfringens counts, and villus histomorphometry. The infected control group showed markedly thickened mucosa, hemorrhages, intestinal lesions, and ballooning of intestine. The supplementation of B. subtilis PB6 reduced the FCR (P < 0.05) and intestinal C. perfringens counts significantly (P < 0.05) compared with the infected control group. It was also observed that B. subtilis PB6 improved villi length by 10.88 and 30.46% (P < 0.05) compared with uninfected and infected control groups, respectively. The group supplemented with B. subtilis PB6 significantly (P < 0.05) increased the villi length to crypt depth ratio by 49.11% compared with the infected group. In conclusion, the supplementation of B. subtilis PB6 not only controlled C. perfringens-induced NE, but also improved intestinal health in the broiler birds.
- Published
- 2013
- Full Text
- View/download PDF
13. Butyrate suppresses expression of neuropilin I in colorectal cell lines through inhibition of Sp1 transactivation.
- Author
-
Yu DC, Waby JS, Chirakkal H, Staton CA, and Corfe BM
- Subjects
- Caco-2 Cells, Colonic Neoplasms genetics, Colonic Neoplasms prevention & control, Electrophoretic Mobility Shift Assay, Enzyme-Linked Immunosorbent Assay, HCT116 Cells, HT29 Cells, Humans, Immunoblotting, Neuropilin-1 genetics, RNA, Small Interfering genetics, RNA, Small Interfering physiology, Reverse Transcriptase Polymerase Chain Reaction, Sp1 Transcription Factor genetics, Vascular Endothelial Growth Factor A genetics, Vascular Endothelial Growth Factor A metabolism, Butyrates pharmacology, Colonic Neoplasms metabolism, Gene Expression Regulation drug effects, Histone Deacetylase Inhibitors pharmacology, Neuropilin-1 metabolism, Sp1 Transcription Factor metabolism
- Abstract
Background: Neuropilin is a transmembrane receptor for vascular endothelial growth factor (VEGF) and is expressed in normal endothelial cells and upregulated in cancer cells. Neuropilin-1 (NRP-1) has been shown to promote tumour cell migration and survival in colon cancer in response to VEGF binding. The expression profiles of neuropilins, associated co-receptors and known ligands have been mapped in three colorectal cell lines: Caco-2, HCT116 & HT29. We have previously shown that butyrate, a naturally occurring histone deacetylase inhibitor (HDACi) produced by fermentation of fibre in the colon, causes apoptosis of colon cancer cell lines., Results: Here we demonstrate that butyrate down-regulates NRP-1 and VEGF at the mRNA and protein level in colorectal cancer cell lines. NRP-1 is a known transcriptional target of Sp1, whose activity is regulated by acetylation. NRP-1 down-regulation by butyrate was associated with decreased binding affinity of Sp1 for canonical Sp-binding sites in the NRP-1 promoter. siRNA-mediated knock-down of Sp1 implied that Sp1 may have strong DNA binding activity but weak transactivation potential., Conclusion: The downregulation of the key apoptotic and angiogenesis regulator NRP-1 by butyrate suggests a novel contributory mechanism to the chemopreventive effect of dietary fibre.
- Published
- 2010
- Full Text
- View/download PDF
14. Sp1 acetylation is associated with loss of DNA binding at promoters associated with cell cycle arrest and cell death in a colon cell line.
- Author
-
Waby JS, Chirakkal H, Yu C, Griffiths GJ, Benson RS, Bingle CD, and Corfe BM
- Subjects
- Blotting, Western, Butyrates pharmacology, Cell Death drug effects, Computational Biology, Cyclin-Dependent Kinase Inhibitor p21 genetics, Cyclin-Dependent Kinase Inhibitor p21 metabolism, HCT116 Cells, Histone Deacetylase Inhibitors pharmacology, Humans, Oligonucleotide Array Sequence Analysis, Polymerase Chain Reaction, Protein Binding drug effects, RNA, Small Interfering, Sp1 Transcription Factor genetics, bcl-2 Homologous Antagonist-Killer Protein genetics, bcl-2 Homologous Antagonist-Killer Protein metabolism, Acetylation drug effects, Cell Cycle drug effects, Colon cytology, DNA metabolism, Sp1 Transcription Factor metabolism
- Abstract
Butyrate, a known histone deacetylase inhibitor (HDACi) and product of fibre fermentation, is postulated to mediate the protective effect of dietary fibre against colon cancer. The transcription factor Sp1 is a target of acetylation and is known to be associated with class I HDACs, including HDAC1. Sp1 is a ubiquitous transcription factor and Sp1-regulated genes include those involved in cell cycle regulation, apoptosis and lipogenesis: all major pathways in cancer development. The only known acetylated residue of Sp1 is lysine703 which resides in the DNA binding domain. Here we show that acetylated Sp1 loses p21- and bak-promoter -binding function in vitro. Furthermore treatment with a panel of HDAC inhibitors showed clustering of activities for a subset of inhibitors, causing G2 cell cycle arrest, Sp1 acetylation, p21 and Bak over-expression, all with very similar EC50 concentrations. These HDACi activities were not distributed according to the molecular class of compound. In order to mimic loss of binding, an siRNA strategy was used to reduce Sp1 expression. This resulted in altered expression of multiple elements of the p53/p21 pathway. Taken together our data suggest a mechanistic model for the chemopreventive actions of butyrate in colon epithelial cells, and provide new insight into the differential activities some classes of HDAC inhibitors.
- Published
- 2010
- Full Text
- View/download PDF
15. Short- and long-term population response to changes in vital rates: implications for population viability analysis.
- Author
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Chirakkal H and Gerber LR
- Subjects
- Animals, Environment, Mexico, Models, Biological, Population Growth, Sea Lions
- Abstract
Conservation practitioners use demographic population viability analysis (PVA) to understand long-term effects of changing demographic rates on population growth rate. Sensitivities and elasticities of stage-specific survival and fertility rates provide managers with guidelines on the relative contributions of various life-history stages to long-term population growth. However, short-term patterns, especially single-year effects, of elasticity may be dramatically different from long-term effects, calling for caution in implementing management policies focusing entirely on only long- or short-term elasticities. Here we illustrate the temporal and spatial variation in elasticity patterns for four populations of California sea lions. Short-term stochastic elasticities were significantly different from long-term elasticities, and spatial patterns of short- and long-term elasticities varied across sites. These differences may be explained by transient effects in age structure and deviations from the stable age distribution, as well as environmental variation. Our results suggest that conservation practitioners should consider calculations of both short-and long-term elasticity in viability analyses that are used to guide management and should use caution in generalizing elasticity patterns across populations.
- Published
- 2010
- Full Text
- View/download PDF
16. Kv1.3 potassium channels in human alveolar macrophages.
- Author
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Mackenzie AB, Chirakkal H, and North RA
- Subjects
- Electrophysiology, Humans, Interleukin-1 metabolism, Kv1.3 Potassium Channel, Macrophages, Alveolar drug effects, Macrophages, Alveolar physiology, Neurotoxins pharmacology, Osmolar Concentration, Patch-Clamp Techniques, Phagocytosis drug effects, Potassium Channels genetics, RNA, Messenger metabolism, Reverse Transcriptase Polymerase Chain Reaction, Scorpion Venoms, Macrophages, Alveolar metabolism, Potassium Channels metabolism, Potassium Channels, Voltage-Gated
- Abstract
Human alveolar macrophages were obtained from macroscopically normal lung tissue obtained at surgical resections, isolated by adherence, and identified by morphology. Whole cell recordings were made from cells 1-3 h in culture, using electrodes containing potassium chloride. From a holding potential of -100 mV, depolarizing pulses to -40 mV or greater activated an outward current. Tail current reversals showed that this current was potassium selective. Margatoxin completely blocked the current; the concentration giving half-maximal block was 160 pM. In current clamp recordings, the resting membrane potential was -34 mV; margatoxin depolarized cells to close to 0 mV. A pure macrophage population was isolated by fluorescence-activated cell sorting, using the phagocytosis of BODIPY-labeled zymosan particles. Reverse transcription-polymerase chain reaction showed that, of 13 voltage-gated K+ (Kv) potassium channels sought, only Kv1.3 mRNA was present. Margatoxin (1 nM) did not affect the percentage of cells showing phagocytosis sorted from the total population. Under these experimental conditions Kv1.3 sets the resting potential of the cells, but it is not required for Fc receptor-mediated phagocytosis.
- Published
- 2003
- Full Text
- View/download PDF
17. Analysis of spore cortex lytic enzymes and related proteins in Bacillus subtilis endospore germination.
- Author
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Chirakkal H, O'Rourke M, Atrih A, Foster SJ, and Moir A
- Subjects
- Amidohydrolases genetics, Bacillus subtilis chemistry, Bacillus subtilis genetics, Bacillus subtilis physiology, Chromatography, High Pressure Liquid methods, Peptidoglycan metabolism, Spores, Bacterial metabolism, Amidohydrolases isolation & purification, Bacillus subtilis enzymology, Bacterial Proteins analysis, Spores, Bacterial enzymology
- Abstract
The location and function of recognized cortex-lytic enzymes of Bacillus subtilis have been explored, and the involvement in germination of a number of related proteins tested. The SleB and CwlJ proteins are cortex-lytic enzymes, partially redundant in function, that are required together for effective cortex hydrolysis during B. subtilis spore germination. Spores were fractionated, and Western blotting of individual fractions suggests that the CwlJ protein is localized exclusively to the outer layers, or integument. The second spore-lytic enzyme, SleB, is localized both in the inner membrane of the spore and in the integument fraction. Neither protein changes location or size as the spore germinates. The ypeB gene is the second gene in a bicistronic operon with sleB. The SleB protein is absent from ypeB mutant spores, suggesting that YpeB is required for its localization or stabilization. In fractions of wild-type spores, the YpeB protein is found in the same locations as SleB - in both the inner membrane and the integument. As the absence of CwlJ protein does not affect the overall RP-HPLC profile of peptidoglycan fragments in germinating spores, this enzyme's hydrolytic specificity could not be defined. The effects of inactivation of several homologues of cortex-lytic enzymes of as yet undefined function were examined, by testing null mutants for their germination behaviour by OD(600) fall and by RP-HPLC of peptidoglycan fragments from dormant and germinating spores. The YaaH enzyme is responsible for a likely epimerase modification of peptidoglycan during spore germination, but the loss of this activity does not appear to affect the spore's ability to complete germination. Unlike the other cortex-lytic enzymes, the YaaH protein is present in large amounts in the spore germination exudate of B. subtilis. Mutants lacking either YdhD or YvbX, both homologues of YaaH, had no detectable alteration in either dormant or germinating spore peptidoglycan, and germinated normally. The ykvT gene, which encodes a protein of the SleB/CwlJ family, has no apparent association with germination: the gene is expressed in vegetative cells, and mutants lacking YkvT have no detectable phenotype.
- Published
- 2002
- Full Text
- View/download PDF
18. Mutations in the gerP locus of Bacillus subtilis and Bacillus cereus affect access of germinants to their targets in spores.
- Author
-
Behravan J, Chirakkal H, Masson A, and Moir A
- Subjects
- Alanine metabolism, Amino Acid Sequence, Bacillus cereus cytology, Bacillus cereus physiology, Bacillus subtilis cytology, Bacillus subtilis physiology, Bacterial Proteins chemistry, Bacterial Proteins genetics, Bacterial Proteins physiology, Cloning, Molecular, Gene Expression Regulation, Bacterial genetics, Hot Temperature, Inosine metabolism, Kinetics, Molecular Sequence Data, Muramidase metabolism, Operon genetics, Permeability, Phenotype, Picolinic Acids metabolism, Sequence Alignment, Spores, Bacterial chemistry, Spores, Bacterial cytology, Spores, Bacterial genetics, Spores, Bacterial physiology, Transcription Factors physiology, Bacillus cereus genetics, Bacillus subtilis genetics, Bacterial Proteins metabolism, Genes, Bacterial, Mutation genetics
- Abstract
The gerP1 transposon insertion mutation of Bacillus cereus is responsible for a defect in the germination response of spores to both L-alanine and inosine. The mutant is blocked at an early stage, before loss of heat resistance or release of dipicolinate, and the efficiency of colony formation on nutrient agar from spores is reduced fivefold. The protein profiles of alkaline-extracted spore coats and the spore cortex composition are unchanged in the mutant. Permeabilization of gerP mutant spores by coat extraction procedures removes the block in early stages of germination, although a consequence of the permeabilization procedure in both wild type and mutant is that late germination events are not complete. The complete hexacistronic operon that includes the site of insertion has been cloned and sequenced. Four small proteins encoded by the operon (GerPA, GerPD, GerPB, and GerPF) are related in sequence. A homologous operon (yisH-yisC) can be found in the Bacillus subtilis genome sequence; null mutations in yisD and yisF, constructed by integrational inactivation, result in a mutant phenotype similar to that seen in B. cereus, though somewhat less extreme and equally repairable by spore permeabilization. Normal rates of germination, as estimated by loss of heat resistance, are also restored to a gerP mutant by the introduction of a cotE mutation, which renders the spore coats permeable to lysozyme. The B. subtilis operon is expressed solely during sporulation, and is sigma K-inducible. We hypothesize that the GerP proteins are important as morphogenetic or structural components of the Bacillus spore, with a role in the establishment of normal spore coat structure and/or permeability, and that failure to synthesize these proteins during spore formation limits the opportunity for small hydrophilic organic molecules, like alanine or inosine, to gain access to their normal target, the germination receptor, in the spore.
- Published
- 2000
- Full Text
- View/download PDF
19. Complete spore-cortex hydrolysis during germination of Bacillus subtilis 168 requires SleB and YpeB.
- Author
-
Boland FM, Atrih A, Chirakkal H, Foster SJ, and Moir A
- Subjects
- Amidohydrolases genetics, Bacillus subtilis chemistry, Bacillus subtilis genetics, Bacterial Proteins genetics, Chromatography, High Pressure Liquid methods, Gene Deletion, Genes, Bacterial, Mutation, Peptidoglycan chemistry, Promoter Regions, Genetic, Sigma Factor genetics, Sigma Factor metabolism, Spores, Bacterial chemistry, Spores, Bacterial genetics, Amidohydrolases metabolism, Bacillus subtilis physiology, Bacterial Proteins metabolism, Spores, Bacterial metabolism
- Abstract
The role of the sleB gene of Bacillus subtilis, which encodes a putative spore-cortex-lytic enzyme, and the downstream ypeB gene were investigated. Both SleB and YpeB were required for normal germination to occur. The corresponding mutants formed phase-bright, heat-resistant spores with no apparent defects in dormancy. However, mutant spore suspensions lost optical density slower than the wild-type and spores were phase-grey even 12 h after the triggering of germination. Since the loss of heat resistance and release of dipicolinic acid was similar to the wild-type, these mutants were blocked in the later stages of germination. The mutants were nevertheless capable of outgrowth on rich agar to form colonies, indicating that other spore components can compensate for their function sufficiently to allow outgrowth. The expression and regulation of the operon was examined using a lacZ transcriptional fusion. Expression of the operon began 2 h after the onset of sporulation and was under the control of RNA polymerase containing the forespore-specific sigma factor, sigmaG. The application of reverse phase HPLC revealed that the mutants do not have any structural defect in the dormant spore cortex and therefore these genes are not required for normal spore-cortex synthesis. The analysis of peptidoglycan dynamics during germination showed, however, that the cortex was only partially hydrolysed in both mutants. This analysis also revealed that the likely hydrolytic bond specificity of SleB is likely to be that of a lytic transglycosylase.
- Published
- 2000
- Full Text
- View/download PDF
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