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In this study, we sampled L. pulmonaria thalli from Mt Kilimanjaro and Mt Meru, Tanzania. Across all sampled tree species, a range of 1–35 thalli of L. pulmonaria were counted per trunk (up to 5 m above ground level), with sampling distributed across 13 (c. 1 ha) plots located in the sub-alpine to montane forest altitudinal gradients of Mt Kilimanjaro and Mt Meru. Descriptive analyses were performed to determine the association of L. pulmonaria with particular host trees among the study sites and regions, and linear mixed effects models (LMM) were used to explore relationships with tree-level variables. The analyses showed that most thalli of L. pulmonaria were unevenly distributed among the tree species in the montane and sub-alpine forests of Mt Kilimanjaro and Mt Meru. Host tree characteristics such as trunk circumference, height on trunk, bark texture and trunk shape appeared to have an effect on the local population size of L. pulmonaria and the frequency of occurrence. Also, the results indicated an effect of trunk circumference and tree bark on the development of L. pulmonaria thallus size among the study sites. Furthermore, host tree species, for example, Hypericum revolutum and Rapenea melanophloeos were important habitats for L. pulmonaria on both mountains, whereas Ilex mitis, Bersama abyssinica and Hagenia abyssinica were important only on one mountain. The wider literature on L. pulmonaria ecology is also reviewed and it is therefore recommended that for successful conservation of the threatened L. pulmonaria in tropical montane forests, strategies should consider the type of the forests, together with the host tree species and their size.

PREMISE Populations of species with large spatial distributions are shaped by complex forces that differ throughout their ranges. To maintain the genetic diversity of species, genepool-based subsets of widespread species must be considered in conservation assessments. METHODS The population genetics of the lichenized fungus Lobaria pulmonaria and its algal partner, Symbiochloris reticulata, were investigated using microsatellite markers to determine population structure, genetic diversity, and degree of congruency in eastern and western North America. Data loggers measuring temperature and humidity were deployed at selected populations in eastern North America to test for climatic adaptation. To better understand the role Pleistocene glaciations played in shaping population patterns, a North American, range-wide species distribution model was constructed and hindcast to 22,000 years before present and at 500-year time slices from then to the present. KEY RESULTS The presence of two gene pools with minimal admixture was supported, one in the Pacific Northwest and one in eastern North America. Western populations were significantly more genetically diverse than eastern populations. There was no evidence for climatic adaptation among eastern populations, though there was evidence for range-wide adaptation to evapotranspiration rates. Hindcast distribution models suggest that observed genetic diversity may be due to a drastic Pleistocene range restriction in eastern North America, whereas a substantial coastal refugial area is inferred in the west. CONCLUSIONS Taken together the results show different, complex population histories of L. pulmonaria in eastern and western North America, and suggest that conservation planning for each gene pool should be considered separately. This article is protected by copyright. All rights reserved.

Dimelaena tibetica is described as a species new to science, characterized by a grayish yellow surface, usually with a covering of white pruina, a crustose thallus, areolate at center, radiate-plicate at margin, adnate apothecia and lacking gyrophoric acid. It differs from other usnic acid-containing Dimelaena species by its plane marginal lobes and adnate apothecia. Based on the study of fresh specimens from the environment of the type locality, Dimelaena altissima is proposed as a new combination. A fresh specimen of Dimelaena oreina (type species of the genus Dimelaena) was collected in the Swiss Alps, in the vicinity of the area where the type material of the species presumably was collected, and a sequence was generated to confirm the phylogenetic position of this genus. All three species share common characters: usnic acid content and a yellowish green upper surface. Descriptions of these species were based on a combination of morphological and phylogenetic analyses. A key and phylogram are provided for these three Dimelaena species which produce usnic acid.

Nonvascular photoautotrophs (NVP), including bryophytes, lichens, terrestrial algae, and cyanobacteria, are increasingly recognized as being essential to ecosystem functioning in many regions of the world. Current research suggests that climate change may pose a substantial threat to NVP, but the extent to which this will affect the associated ecosystem functions and services is highly uncertain. Here, we propose a research agenda to address this urgent question, focusing on physiological and ecological processes that link NVP to ecosystem functions while also taking into account the substantial taxonomic diversity across multiple ecosystem types. Accordingly, we developed a new categorization scheme, based on microclimatic gradients, which simplifies the high physiological and morphological diversity of NVP and world-wide distribution with respect to several broad habitat types. We found that habitat-specific ecosystem functions of NVP will likely be substantially affected by climate change, and more quantitative process understanding is required on (1) potential for acclimation, (2) response to elevated CO2, (3) role of the microbiome, and (4) feedback to (micro)climate. We suggest an integrative approach of innovative, multimethod laboratory and field experiments and ecophysiological modelling, for which sustained scientific collaboration on NVP research will be essential.

Context Riparian areas are considered to undergo major alterations under changing climate, making floodplain habitats targets for conservation and landscape planning. Protected areas might provide sanctuaries especially for sessile riparian plant species, but these niches are not always persistent over time. Objectives We investigate if plant species of floodplain forests are provided with suitable habitat within currently protected areas and if these refugia persist. A coupled-modelling approach is used to gain spatially explicit information on new areas for sanctuaries. Methods We use species distribution models to predict the niche of 12 Salicion albae and 7 Fraxinion floodplain forest species along rivers in Switzerland, under current, moderate and extreme climate change scenarios up to 80 years to the future (2100). The spread of plant species from current habitat to suitable future habitat is simulated using dispersal vectors and life history traits. Results Salicion albae species are more flexible under both climate change scenarios than Fraxinion species. The main limitation for the spread of species is their dispersal ability, as only a minority of the suitable cells is colonized during the simulation process. The predicted future presence within currently protected areas decreases under both climate change scenarios in the model. Conclusions Current protected floodplains do not provide persistent refugia for the plants studied, but might still be of importance to other organisms. Planning of sanctuaries for riparian plant species and communities need to focus on connectivity along rivers to maintain viable source populations in dynamic riverine landscapes under changing climate.

Context Dead wood is a key habitat for saproxylic species, which are often used as indicators of habitat quality in forests. Understanding how the amount and spatial distribution of dead wood in the landscape affects saproxylic communities is therefore important for maintaining high forest biodiversity. Objectives We investigated effects of the amount and isolation of dead wood on the alpha and beta diversity of four saproxylic species groups, with a focus on how the spatial scale influences results. Methods We inventoried saproxylic beetles, wood-inhabiting fungi, and epixylic bryophytes and lichens on 62 plots in the Sihlwald forest reserve in Switzerland. We used GLMs to relate plot-level species richness to dead wood amount and isolation on spatial scales of 20–200 m radius. Further, we used GDMs to determine how dead wood amount and isolation affected beta diversity. Results A larger amount of dead wood increased beetle richness on all spatial scales, while isolation had no effect. For fungi, bryophytes and lichens this was only true on small spatial scales. On larger scales of our study, dead wood amount had no effect, while greater isolation decreased species richness. Further, we found no strong consistent patterns explaining beta diversity. Conclusions Our multi-taxon study shows that habitat amount and isolation can strongly differ in the spatial scale on which they influence local species richness. To generally support the species richness of different saproxylic groups, dead wood must primarily be available in large amounts but should also be evenly distributed because negative effects of isolation already showed at scales under 100 m., Landscape Ecology, 36 (1), ISSN:0921-2973, ISSN:1572-9761

The popular dual definition of lichen symbiosis is under question with recent findings of additional microbial partners living within the lichen body. Here we compare the distribution and co-occurrence patterns of lichen photobiont and recently described secondary fungus (Cyphobasidiales yeast) to evaluate their dependency on lichen host fungus (mycobiont). We sequenced the nuclear internal transcribed spacer (ITS) strands for mycobiont, photobiont, and yeast from six widespread northern hemisphere epiphytic lichen species collected from 25 sites in Switzerland and Estonia. Interaction network analyses and multivariate analyses were conducted on operational taxonomic units based on ITS sequence data. Our study demonstrates the frequent presence of cystobasidiomycete yeasts in studied lichens and shows that they are much less mycobiont-specific than the photobionts. Individuals of different lichen species growing on the same tree trunk consistently hosted the same or closely related mycobiont-specific Trebouxia lineage over geographic distances while the cystobasidiomycete yeasts were unevenly distributed over the study area - contrasting communities were found between Estonia and Switzerland. These results contradict previous findings of high mycobiont species specificity of Cyphobasidiales yeast at large geographic scales. Our results suggest that the yeast might not be as intimately associated with the symbiosis as is the photobiont.

The first detailed survey is presented of a recently discovered population of Erioderma pedicellatum, a globally rare lichen, in the primeval spruce forests of the Kamchatka Peninsula, Russia. Three subpopulations are described, located in the Levaya Schapina River basin, in the Kimitina River basin, and on the slopes of the extinct volcano, Nikolka. In total, we observed 1894 thalli on 167 Yezo spruce trunks. In Kamchatka, E. pedicellatum occurs exclusively on bark-covered spruce twigs of mainly young and dwarf-stressed older trees. We discovered a high number of juvenile thalli, which suggests that this population is reproducing. However, its habitat is declining because spruce forests in the region are the target of industrial clear-cutting and there is a high incidence of forest fires. Over the next 60 years, which corresponds to three generations of E. pedicellatum, we infer that continued habitat loss will induce a 48% decline in these lichen populations. As a result of our analyses, the Asian population is classified as ‘Vulnerable’, based on IUCN Red List criteria.

The epiphytic lichen Lobaria pindarensis is a Himalayan endemic species with little information on distribution, genetic diversity and structural complexity. During an intensive survey in the Nepal Himalayas, we collected 1256 thallus fragments from 45 phorophyte species to study their distribution and population genetics along an elevational gradient. We quantified genetic diversity and population structure of each symbiont at 17 fungus specific and 9 alga specific microsatellite loci. The Bayesian clustering identified three and two distinct gene pools for mycobiont and photobiont. We found that genetic diversity, allelic richness and gene pool composition and distribution were significantly influenced by elevation. We discovered both clonally and sexually reproduced repeated genotypes of the symbionts.

River alterations for natural hazard mitigation and land reclamation result in habitat decline and fragmentation for riparian plant species. Extreme events such as floods are responsible for additional local species loss or population decline. Tributaries might provide refugia and subsequent source populations for the colonization of downstream sites in connected riverine networks with metapopulations of plant species. In this study, we analyzed the metapopulation structure of the endangered riparian shrub species Myricaria germanica along the river Isel, Austria, which is part of the Natura 2000 network, and its tributaries. The use of 22 microsatellite markers allowed us to assess the role of tributaries and single populations as well as gene flow up- and downstream. The analysis of 1307 individuals from 45 sites shows the influence of tributaries to the genetic diversity at Isel and no overall isolation by distance pattern. Ongoing bidirectional gene flow is revealed by the detection of first-generation migrants in populations of all tributaries as well as the river Isel, supporting upstream dispersal by wind (seeds) or animals (seeds and pollen). However, some populations display significant population declines and high inbreeding, and recent migration rates are non-significant or low. The genetic pattern at the mouth of river Schwarzach into Isel and shortly thereafter river Kalserbach supports the finding that geographically close populations remain connected and that tributaries can form important refugia for M. germanica in the dynamic riverine network. Conservation and mitigation measures should therefore focus on providing sufficient habitat along tributaries of various size allowing pioneer plants to cope with extreme events in the main channel, especially as they are expected to be more frequent under changing climate.

River relocations due to realization of infrastructure projects or flood protection provide a high potential for ecological restorations and the creation of near-natural habitats. Colonization success of new riparian habitats in the dynamic riverine zone is rarely predictable, as the survival of sessile plants is highly dependent on flood events. Relocated rivers offer a unique opportunity to study restoration success, and using genetic information allows tracing to source populations and assessing connectivity. This study focuses on the colonization of a new, 3.4 km long river stretch in the Inn catchment (Switzerland), with an artificial, stable shoreline and a dynamic riverine zone with gravel bars. We assess the colonization success of Myricaria germanica, a flagship species for floodplain pioneer vegetation, 14 years after river relocation. The population with over 600 individuals of which 147 were used for genetic analysis based on 22 microsatellite markers in comparison to 11 potential source populations up- and downstream of the new site. Our results on demography and genetic composition together with information on flood events allow tracing the origin of the subpopulation along the stable shoreline to a single founder event but several founder individuals further upstream. The subpopulation in the dynamic zone is younger and more likely strongly dependent on gene flow from the stable shoreline subpopulation, but allows for rejuvenation at the site. Genetic patterns along the catchment indicate ongoing gene flow, suggesting potential for colonization success for further restorations in the catchment. Our data reveals that near-natural flood dynamics with repeated larger flood events is a key factor for successful colonization of dynamic riparian habitats.

SUMMARY Cuttings of Betula pendula Roth were grown in field fumigation chambers throughout one growing season in filtered air with < 3 nl l−1 O3 (control; C) or day/night = 90/40 nl 1−1 O3 (ozone fumigation: O3). Plants were watered with either low (0·005 %: LF) or high-concentrated (0·05%: HF) fertilizer solution. Discs between second-order veins in the central portion of the leaves were excised and immediately cryofixed in liquid nitrogen for low-temperature scanning electron-microscopy (LTSEM) at 1000 hours and 1400 hours. Stomatal width, area and density were measured by digital image-analysis. X-ray counts of potassium (K) and calcium (Ca) ions were determined by means of energy-dispersive X-ray microanalysis in guard and subsidiary cells. Accurate and fast measurements of stomatal apertures by image analysis were possible in birch leaves, because the darkness of the stomatal pore contrasts with the brightness of the guard cells and the cuticular ledges. Regression analysis showed a close relationship between the stomatal width and the pore area (r= 0·938, P < 0·01). At all harvest times, the stomatal pores were significantly narrowed in the high fertilization control treatment (O3/HF vs. O3/LF), and in the ozone treatment at 1400 hours (O3/HF vs. C/LF). In addition to this fertilization effect, ozone had also narrowed the stomatal pores (O3/HF vs. C/HF at 1400 hours, O3/LF vs. C/LF at all harvest times). In addition to these functional effects, morphological effects (individual leaf area, stomatal density) were determined. Single-leaf area was increased by high fertilization, with a tendency to decrease with O3 fumigation. The stomatal density in intercostal fields was increased by O3 but decreased by high fertilisation. Stomatal widening was accompanied by increased K count rates in the guard cells, in contrast to constant K values in the subsidiary cells, irrespective of the fumigation or fertilization regimes. Calcium counts in the guard cells were similar to those in the subsidiary cells, and were independent of the aperture width. In samples with established ozone injury, the K/Ca ratio in collapsed guard cells increased compared with turgid guard cells irrespective of the pore aperture. Collapsed subsidiary cells only differed from turgid subsidiary cells when the guard cells had also collapsed and thus closed the pore.

Recognizing autochthonous mountain forests in Switzerland by means of epiphytic lichens Old undisturbed forest stands with a long forest history are of particular interest for nature and species conservation. Epiphytic lichens are often used as indicators for such autochthonous stands. In this study, we tested to what extent 14 taxa of epiphytic lichens, which are easy to identify by forest practitioners and have a low dispersal potential, have specific requirements for micro habitats and are often dependent on old trees, would be suitable indicator species for autochthonous forest stands in the Swiss mountain forests. As autochthonous, we considered forest stands with a near-natural conifer composition, a minimum age of 90 years, a continuous forest cover over 120 years and no evidence of historical intervention such as clear cutting or afforestation. For the study, the regular field teams of the Swiss National Forest Inventory (NFI) included the potential indicator species in the third survey (2004–2006) on all plots in the 1.4 km network on about three trees each. The data for the 3510 plots in the mountain forest were then evaluated using the NFI data on forest structure, forest history and forest management. Overall, the number of indicator species was significantly higher in autochthonous forest stands than in non-autochthonous ones, although it varied considerably with altitude and biogeographical region. Our investigations showed that fruticose lichens of the genera Bryoria and Usnea, Evernia divaricata and Letharia vulpina, foliose lichens such as Cetrelia olivetorum and Lobaria pulmonaria, and crustose lichens such as Lecanactis abietina and Microcalicium disseminatum, Calicium sp. div. and Chaenotheca sp. div. as well as Chrysothrix candelaris are reliable indicators for autochthonous stands in Swiss mountain forests, especially if several indicator species occur together. The lichens tested are therefore suitable in practice for a simple identification of autochthonous forest stands, e.g. for delimiting forest reserves or old forest patches. These stands are of high importance for the promotion of biodiversity in a forest landscape that has been managed for centuries.

Understanding the distribution of genetic patterns and structure is an essential target in population genetics and, thereby, important for conservation genetics. The main aim of our study was to investigate the population genetics of Usnea subfloridana, a widespread lichenised fungus, focusing on a comparison of genetic variation of its populations amongst three geographically remote and disconnected regions, in order to determine relationships amongst environmental data, variation in lichen secondary chemistry and microsatellite data in genotyped populations. In all, 928 Usnea thalli from 17 populations were genotyped using seven specific fungal microsatellite markers. Different measures of genetic diversity (allelic richness, private allelic richness, Nei’s unbiased genetic diversity and clonal diversity) were calculated and compared between lichen populations. Our results revealed a low genetic differentiation of U. subfloridana populations amongst three distant areas in Estonia and also a high level of gene flow. The results support suggestion of the long-range vegetative dispersal of subpendulous U. subfloridana via symbiotic propagules (soralia, isidia or fragments of thalli). Our study has also provided evidence that environmental variables, including mean annual temperature and geographical longitude, shape the genetic structure of U. subfloridana populations in Estonia. Additionally, a weak but statistically significant correlation between lichen chemotypes and microsatellite allele distribution was found in genotyped specimens.

The Hindu Kush Himalayan (HKH) region harbours some of the richest and most diverse ecosystems on the planet that are now facing substantial threats through changes in climate, land use and human population growth, with serious consequences for the biodiversity in this mountainous region. In this paper we evaluated the effects of climate change on the distribution of the tripartite epiphytic macrolichen Lobaria pindarensis, considered to be endemic to the Himalayas. To predict the current and future distribution of this species we applied the Random Forest modelling algorithm and climatic variables with a post-processing of projected distributions using a map of habitat types in the study region. We calibrated models based on 1397 species presences within an altitudinal range of 2036–4000 m and extrapolated them according to two IPCC scenarios of climate change (RCP 2·6 and RCP 8·5). Based on the results of ensemble modelling, two new localities where L. pindarensis might potentially occur were predicted. Our simulations predicted a range expansion of this epiphytic lichen to the north-east and to higher altitudes in response to climate change, although the species’ low dispersal abilities and the local availability of trees as a substratum will considerably limit latitudinal and altitudinal shifts. By contrast, assuming the species can migrate to previously unoccupied areas, and depending on different future climate scenarios, our models forecasted a habitat loss of 30–70% for L. pindarensis. The main reason for the simulated habitat loss is the expected increase in mean annual temperature (by 1·5–3·7 °C) and total annual precipitation (by 56–125 mm). Our results contribute further evidence for the high sensitivity of tripartite macrolichens, especially those from mountain areas, to climate change and particularly emphasize the vulnerability of L. pindarensis. Thus, we stress the need to develop and formulate conservation measures and strategies for the protection of this endemic species in the Hindu Kush Himalayan region.

Functional traits are predictors of plants in response to environmental stimuli. They represent specific functional adaptations to various environmental stresses. This study deals with the variation in plant functional traits along elevation gradient and land-use types in Sagarmatha National Park and Buffer Zone, Nepal. Two field investigations in April and September, 2011 were made to collect samples. Sampling was done from 2200 - 3800 m asl varying approx. 400 m. East and west facing aspects of each valley were chosen. In each aspect four land-use type categories including disturbed (cultivated land, exploited forest and meadow) and less disturbed natural forest were selected. A transect of 25 m long and 2.5 m wide was laid. Different eight traits of plants including lifeform, plant height, clonality, spinescence, leaf dry matter content, stem specific density, twig dry matter content and twig drying time were examined for 60 plant species belonging to 31 families, collected from 40 sampled plots. Nine different types of growth forms were recorded. Plant height of the investigated species ranged from 0.03 - 15 m. The stolon consisting species were dominant in exploited forests. Diversity of clonal species was more in meadow and non-clonal species were dominant in all the altitudes. Only eight species consisted of spines. In the disturbed land-use categories, we found high variation in a particular trait. Correlation analyses revealed the significant relationship (p < 0.01) among different traits. Herbs and shrubs were dominant at higher elevation and in disturbed land-use categories. Species from high altitude were mostly short basal herbs, while spinescence and tall trees were observed at lower altitudes. Species recorded in meadows and exploited forests showed high variation in traits due to disturbance mainly grazing, fire, litter collection and trampling. Altitudinal variation, climatic conditions and disturbance most strongly influence trait expression in the study area.

In this study, the diversity of Pyxine Fr. in China was assessed based on morphological and chemical traits and molecular data are inferred from ITS and mtSSU sequences. Nineteen species were recognised, including three that are new to science (i.e. P.flavicans M. X. Yang & Li S. Wang, P.hengduanensis M. X. Yang & Li S. Wang and P.yunnanensis M. X. Yang & Li S. Wang) and three records new to China were found (i.e. P.cognata Stirt., P.himalayensis Awas. and P.minuta Vain.). Pyxineyunnanensis is diagnosed by the small size of the apothecia, a white medulla of the stipe and the presence of lichexanthone. Pyxineflavicans is characterised by broad lobes, a pale yellow medulla of the stipe and the presence of atranorin. Pyxinehengduanensis can be distinguished by its pale yellow medulla, marginal labriform soralia and the absence of atranorin. Detailed descriptions of each new species are presented, along with a key to the known species of Pyxine in China.

In spite of considerable effort to verify the theory of species-pairs, uncertainty still exists about the relationship between sexually or vegetatively reproducing populations of morphologically indistinguishable, sympatric lichen species. The current paper studies putative species-pairs within the Asian Lobaria meridionalis-group, using a nine-locus and time calibrated species-tree approach. Analyses demonstrate that pairs of sexually or vegetatively reproducing lineages split into highly supported monophyletic clades—confirming molecularly the species-pair concept for the L. meridionalis-group. In the broader context of evolution and speciation dynamics in lichenized fungi, this paper attempts to synthesize molecular findings from the last two decades to promote a more modern perception of the species-pair concept. Taxonomically, eight species were found to currently conform to the L. meridionalis-group, which differentiated during the Pliocene and Pleistocene. The coincidence of paleoclimatic events with estimated dates of divergence support a bioclimatic hypothesis for the evolution of species in the L. meridionalis-group, which also explains their current eco-geographic distribution patterns. Greater recognition for species with a long and independent evolutionary history, which merit high conservation priority, will be especially critical for preserving geographically restricted endemics from Southeast Asia, where habitat loss is driving rapid declines.

The distribution of sessile riparian plant species and their habitats along riverways are highly dependent on river dynamics and connectivity. River restoration and conservation of riparian plant species rely on expert knowledge and more recently also on modelling approaches to predict species’ occurrence. Ecological modelling on habitat suitability for terrestrial species is usually based on climatic and topographic features, whilst river hydrodynamics is rarely considered.Our study aims at predicting suitable habitat for a characteristic pioneer species for dynamic riverine habitats, the German Tamarisk (Myricaria germanica). Habitat predictions are tested in a case study on a floodplain along Moesa river in canton Grisons in South-East Switzerland. We link two modeling approaches having two different spatial scales using a hierarchical process. First, we define a large-scale habitat suitability matrix based on climatic, geological and topographic predictors. Using a two-dimensional hydrodynamic model, inundation frequency maps and flood level maps for several significant months for German Tamarisk establishment are constructed, to further refine the niche for the riparian plant.The predicted habitat suitability is evaluated with species presence data for both adult and offspring plants. Our results allow gaining insights into the importance of linking ecological and hydraulic models having different spatial and temporal scales, for more refined predictions of riparian species distribution.

Large phylogeographic studies on lichens are scarce, and none involves a single species within which different lineages show fixed alternative dispersal strategies. We investigated Bryoria fuscescens (including B. capillaris) in Europe and western North Africa by phenotypically characterizing 1400 specimens from 64 populations and genotyping them with 14 microsatellites. We studied population structure and genetic diversity at the local and continental scales, discussed the post-glacial phylogeography, and compared dispersal capacities of phenotypes with and without soralia. Our main hypothesis is that the estimated phylogeography, migration routes, and dispersal capacities may be strongly biased by ancestral shared alleles. Scandinavia is genetically the richest area, followed by the Iberian Peninsula, the Carpathians, and the Alps. Three gene pools were detected: two partially linked to phenotypic characteristics, and the third one genetically related to the American sister species B. pseudofuscescens. The comparison of one gene pool producing soredia and one not, suggested both as panmictic, with similar levels of isolation by distance (IBD). The migration routes were estimated to span from north to south, in disagreement with the assessed glacial refugia. The presence of ancestral shared alleles in distant populations can explain the similar IBD levels found in both gene pools while producing a false signal of panmixia, and also biasing the phylogeographic reconstruction. The incomplete lineage sorting recorded for DNA sequence loci also supports this hypothesis. Consequently, the high diversity in Scandinavia may rather come from recent immigration into northern populations than from an in situ diversification. Similar patterns of ancestral shared polymorphism may bias the phylogeographical reconstruction of other lichen species.

Accurate species delimitation has a pivotal role in conservation biology, and it is especially important for threatened species where decisions have political and economic consequences. Finding and applying appropriate character sets and analytical tools to resolve interspecific relationships remains challenging in lichenized fungi. The main aim of our study was to re-assess the species boundaries between Usnea subfloridana and Usnea florida, which have been phylogenetically indistinguishable until now, but are different in reproductive mode and ecological preferences, using fungal-specific simple sequence repeats (SSR), i.e. microsatellite markers. Bayesian clustering analysis, discriminant analysis of principal components (DAPC), minimal spanning network (MSN), and principal component analysis (PCA) failed to separate U. florida and U. subfloridana populations. However, a low significant differentiation between the two taxa was observed across all populations according to AMOVA results. Also, analysis of shared haplotypes and statistical difference in clonal diversity (M) supported the present-day isolation between the apotheciate U. florida and predominantly sorediate U. subfloridana. Our results do not provide a clear support either for the separation of species in this pair or the synonymization of U. florida and U. subfloridana. We suggest that genome-wide data could help resolve the taxonomic question in this species pair.

Alterations of riparian areas of running waters resulted in fragmentation of the riverscape. The possible impact of climate change additionally stresses the importance for conservation planning for riparian habitats, especially for sessile plant species. The survival of species under changing habitat availability can be counteracted by ensuring functional connectivity of riparian plant species. This study applies a coupled modelling framework using species distribution models and dispersal simulations, which allow to analyze the potential future distribution of species in relation to their ecological niche, life history traits including dispersal abilities as well as barriers to dispersal such as dams. Modelled suitable habitats for six riparian plant species characteristic for the olive willow plant community (Salicion elaeagni) showed dramatic changes under the impact of two climate change scenarios. While habitat suitability remained low for species with a narrow ecological niche, it increased under climate change scenarios for species which are also found in secondary habitat outside riparian areas. Simulations of dispersal to the potential future habitat revealed nevertheless high numbers of decolonized cells after 80 years of dispersal for species with high future habitat suitability. This stresses the importance of a joint investigation of the habitat suitability under climate change scenarios, dispersal parameters as well as life history traits for conservation planning of riparian species. The simulated future distribution revealed that barriers along rivers have a significant negative effect on the spread of the studied plant species. Our results suggest that conservation management should focus on providing connected stepping stone habitats for riparian plant species along rivers, as current species occurrences are not persistent over time.

Using an ITS mutation rate as calibration reference, a three-locus timetree was generated for the genus Lobaria and its most important clades. The timetree resolved most clades with strong support and gave an estimate of the diversification time for Lobaria during the early Oligocene. A fossil impression from a 12–24 million-year-old Miocene deposit is hypothesized here to belong to an ancestral Lobaria species. Additionally, the age estimate indicates that the paleoclimate and the closing or opening of the Bering Strait played a major role in shaping the current distribution of most Lobaria species. It is hypothesized that the Bering land bridge acted as a major highway during warm-temperate climate periods, but as a barrier during Arctic climate times.