17,720 results on '"Clark C."'
Search Results
2. Comparison of peripheral leukocyte parameters in patients receiving conventionally and hypofractionated radiotherapy schemes for the treatment of newly diagnosed glioblastoma
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Lindsey Greenlund, Ryan Shanley, Kellen Mulford, Elizabeth C. Neil, Jessica Lawrence, Susan Arnold, Michael Olin, G. Elizabeth Pluhar, Andrew S. Venteicher, Clark C. Chen, Clara Ferreira, Margaret Reynolds, L. Chinsoo Cho, Christopher Wilke, B. Aika Shoo, Jianling Yuan, Kathryn Dusenbery, Lawrence R. Kleinberg, Stephanie A. Terezakis, and Lindsey Sloan
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fractionation ,leukocytes ,hypofractionated radiotherapy ,conventionally fractionated radiotherapy ,glioblastoma ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionTreatment for glioblastomas, aggressive and nearly uniformly fatal brain tumors, provide limited long-term success. Immunosuppression by myeloid cells in both the tumor microenvironment and systemic circulation are believed to contribute to this treatment resistance. Standard multi-modality therapy includes conventionally fractionated radiotherapy over 6 weeks; however, hypofractionated radiotherapy over 3 weeks or less may be appropriate for older patients or populations with poor performance status. Lymphocyte concentration changes have been reported in patients with glioblastoma; however, monocytes are likely a key cell type contributing to immunosuppression in glioblastoma. Peripheral monocyte concentration changes in patients receiving commonly employed radiation fractionation schemes are unknown.MethodsTo determine the effect of conventionally fractionated and hypofractionated radiotherapy on complete blood cell leukocyte parameters, retrospective longitudinal concentrations were compared prior to, during, and following standard chemoradiation treatment.ResultsThis study is the first to report increased monocyte concentrations and decreased lymphocyte concentrations in patients treated with conventionally fractionated radiotherapy compared to hypofractionated radiotherapy.DiscussionUnderstanding the impact of fractionation on peripheral blood leukocytes is important to inform selection of dose fractionation schemes for patients receiving radiotherapy.
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- 2023
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3. Pioneering models of pediatric brain tumors
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Florina-Nicoleta Grigore, Serena Johanna Yang, Clark C. Chen, and Tomoyuki Koga
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Genome engineering ,Models, Organoids ,Pediatric brain tumors ,Stem cells ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Among children and adolescents in the United States (0 to 19 years old), brain and other central nervous system tumors are the second most common types of cancers, surpassed in incidence only by leukemias. Despite significant progress in the diagnosis and treatment modalities, brain cancer remains the leading cause of death in the pediatric population. There is an obvious unfulfilled need to streamline the therapeutic strategies and improve survival for these patients. For that purpose, preclinical models play a pivotal role. Numerous models are currently used in pediatric brain tumor research, including genetically engineered mouse models, patient-derived xenografts and cell lines, and newer models that utilize novel technologies such as genome engineering and organoids. Furthermore, extensive studies by the Children's Brain Tumor Network (CBTN) researchers and others have revealed multiomic landscapes of variable pediatric brain tumors. Combined with such integrative data, these novel technologies have enabled numerous applicable models. Genome engineering, including CRISPR/Cas9, expanded the flexibility of modeling. Models generated through genome engineering enabled studying particular genetic alterations in clean isogenic backgrounds, facilitating the dissection of functional mechanisms of those mutations in tumor biology. Organoids have been applied to study tumor-to-tumor-microenvironment interactions and to address developmental aspects of tumorigenesis, which is essential in some pediatric brain tumors. Other modalities, such as humanized mouse models, could potentially be applied to pediatric brain tumors. In addition to current valuable models, such novel models are anticipated to expedite functional tumor biology study and establish effective therapeutics for pediatric brain tumors.
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- 2023
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4. Wide-field calcium imaging reveals widespread changes in cortical functional connectivity following mild traumatic brain injury in the mouse
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Samuel W. Cramer, Samuel P. Haley, Laurentiu S. Popa, Russell E. Carter, Earl Scott, Evelyn B. Flaherty, Judith Dominguez, Justin D. Aronson, Luke Sabal, Daniel Surinach, Clark C. Chen, Suhasa B. Kodandaramaiah, and Timothy J. Ebner
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Traumatic brain injury ,In vivo optical imaging ,Calcium imaging ,Network dynamics ,Spatial independent component analysis ,Functional connectivity ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
>2.5 million individuals in the United States suffer mild traumatic brain injuries (mTBI) annually. Mild TBI is characterized by a brief period of altered consciousness, without objective findings of anatomic injury on clinical imaging or physical deficit on examination. Nevertheless, a subset of mTBI patients experience persistent subjective symptoms and repeated mTBI can lead to quantifiable neurological deficits, suggesting that each mTBI alters neurophysiology in a deleterious manner not detected using current clinical methods. To better understand these effects, we performed mesoscopic Ca2+ imaging in mice to evaluate how mTBI alters patterns of neuronal interactions across the dorsal cerebral cortex. Spatial Independent Component Analysis (sICA) and Localized semi-Nonnegative Matrix Factorization (LocaNMF) were used to quantify changes in cerebral functional connectivity (FC). Repetitive, mild, controlled cortical impacts induce temporary neuroinflammatory responses, characterized by increased density of microglia exhibiting de-ramified morphology. These temporary neuro-inflammatory changes were not associated with compromised cognitive performance in the Barnes maze or motor function as assessed by rotarod. However, long-term alterations in functional connectivity (FC) were observed. Widespread, bilateral changes in FC occurred immediately following impact and persisted for up to 7 weeks, the duration of the experiment. Network alterations include decreases in global efficiency, clustering coefficient, and nodal strength, thereby disrupting functional interactions and information flow throughout the dorsal cerebral cortex. A subnetwork analysis shows the largest disruptions in FC were concentrated near the impact site. Therefore, mTBI induces a transient neuroinflammation, without alterations in cognitive or motor behavior, and a reorganized cortical network evidenced by the widespread, chronic alterations in cortical FC.
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- 2023
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5. A radiomics-based model for predicting local control of resected brain metastases receiving adjuvant SRS
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Kellen Mulford, Chuyu Chen, Kathryn Dusenbery, Jianling Yuan, Matthew A. Hunt, Clark C. Chen, Paul Sperduto, Yoichi Watanabe, and Christopher Wilke
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Gamma Knife ,Brain metastases ,Radiomics ,Local control ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Purpose: Adjuvant radiosurgery to the cavities of surgically resected brain metastases provides excellent local tumor control while reducing the risk of deleterious cognitive decline associated with whole brain radiotherapy. A subset of these patients, however, will develop disease recurrence following radiosurgery. In this study, we sought to assess the predictive capability of radiomic-based models, as compared with standard clinical features, in predicting local tumor control. Methods: We performed a retrospective chart review of patients treated with adjuvant radiosurgery for resected brain metastases at the “Institution” from 2009 to 2019. Shape, intensity and texture based radiomics features of the cavities were extracted from the pre-radiosurgery treatment planning MRI scans and trained using a gradient boosting technique with K-fold cross validation. Results: In total, 71 cavities from 67 treated patients were included for analysis. The 6 and 12 month local control estimates were 86% and 76%, respectively. The 6 and 12 month overall survival was 78% and 55%, respectively. Thirty-six patients developed intracranial failures outside of the surgical cavity. The predictive model for local control trained on imaging features from the whole cavity achieved an area-under-the-curve (AUC) of 0.73 on the validation set versus an AUC of 0.40 for the clinical features. Conclusions: Here we report a single institutional experience using radiomic-based predictive modeling of local tumor control following adjuvant Gamma Knife radiosurgery for resected brain metastases. We found the radiomics features to provide more robust predictive models of local control rates versus clinical features alone. Such techniques could potentially prove useful in the clinical setting and warrant further investigation.
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- 2021
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6. Brain fMRI during orientation selective epidural spinal cord stimulation
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Antonietta Canna, Lauri J. Lehto, Lin Wu, Sheng Sang, Hanne Laakso, Jun Ma, Pavel Filip, Yuan Zhang, Olli Gröhn, Fabrizio Esposito, Clark C. Chen, Igor Lavrov, Shalom Michaeli, and Silvia Mangia
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Medicine ,Science - Abstract
Abstract Epidural spinal cord stimulation (ESCS) is widely used for chronic pain treatment, and is also a promising tool for restoring motor function after spinal cord injury. Despite significant positive impact of ESCS, currently available protocols provide limited specificity and efficiency partially due to the limited number of contacts of the leads and to the limited flexibility to vary the spatial distribution of the stimulation field in respect to the spinal cord. Recently, we introduced Orientation Selective (OS) stimulation strategies for deep brain stimulation, and demonstrated their selectivity in rats using functional MRI (fMRI). The method achieves orientation selectivity by controlling the main direction of the electric field gradients using individually driven channels. Here, we introduced a similar OS approach for ESCS, and demonstrated orientation dependent brain activations as detected by brain fMRI. The fMRI activation patterns during spinal cord stimulation demonstrated the complexity of brain networks stimulated by OS-ESCS paradigms, involving brain areas responsible for the transmission of the motor and sensory information. The OS approach may allow targeting ESCS to spinal fibers of different orientations, ultimately making stimulation less dependent on the precision of the electrode implantation.
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- 2021
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7. GBP5 drives malignancy of glioblastoma via the Src/ERK1/2/MMP3 pathway
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Xiaoting Yu, Jing Jin, Yanwen Zheng, Hua Zhu, Hui Xu, Jun Ma, Qing Lan, Zhixiang Zhuang, Clark C. Chen, and Ming Li
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Cytology ,QH573-671 - Abstract
Abstract Guanylate binding proteins (GBPs), a family of interferon-inducible large GTPase, play a pivotal role in cell-autonomous immunity and tumor malignant transformation. Glioblastoma (GBM) is the most prevalent and lethal primary brain tumor in adults. Here we show that GBP5 was highly expressed in GBM cell lines and in clinical samples, especially in the mesenchymal subtype. The expression levels of GBP5 were negatively correlated with the prognosis of GBM patients. Overexpression of GBP5 promoted the proliferation, migration, and invasion of GBM cells in vitro and in vivo. In contrast, silencing GBP5 by RNA interference exhibited the opposite effects. Consequently, targeting GBP5 in GBM cells resulted in impaired tumor growth and prolonged survival time of mice with GBM tumors. We further identified that the Src/ERK1/2/MMP3 axis was essential for GBP5-promoted GBM aggressiveness. These findings suggest that GBP5 may represent a novel target for GBM intervention.
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- 2021
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8. TESS discovery of two super-Earths orbiting the M-dwarf stars TOI-6002 and TOI-5713 near the radius valley
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Ghachoui, M., Rackham, B. V., Dévora-Pajares, M., Chouqar, J., Timmermans, M., Kaltenegger, L., Sebastian, D., Pozuelos, F. J., Eastman, J. D., Burgasser, A. J., Murgas, F., Stassun, K. G., Gillon, M., Benkhaldoun, Z., Palle, E., Delrez, L., Jenkins, J. M., Barkaoui, K., Narita, N., de Leon, J. P., Mori, M., Shporer, A., Rowden, P., Kostov, V., Fűrész, G., Collins, K. A., Schwarz, R. P., Charbonneau, D., Guerrero, N. M., Ricker, G., Jehin, E., Fukui, A., Kawai, Y., Hayashi, Y., Esparza-Borges, E., Parviainen, H., Clark, C. A., Ciardi, D. R., Polanski, A. S., Schleider, J., Gilbert, E. A., Crossfield, I. J. M., Barclay, T., Dressing, C. D., Karpoor, P. R., Softich, E., Gerasimov, R., and Davoudi, F.
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Astrophysics - Earth and Planetary Astrophysics - Abstract
We present the validation of two TESS super-Earth candidates transiting the mid-M dwarfs TOI-6002 and TOI-5713 every 10.90 and 10.44 days, respectively. The first star (TOI-6002) is located $32.038\pm0.019$ pc away, with a radius of $0.2409^{+0.0066}_{-0.0065}$ \rsun, a mass of $0.2105^{+0.0049}_{-0.0048}$ \msun, and an effective temperature of $3229^{+77}_{-57}$ K. The second star (TOI-5713) is located $40.946\pm0.032$ pc away, with a radius of $0.2985^{+0.0073}_{-0.0072}$ \rsun, a mass of $0.2653\pm0.0061$ \msun, and an effective temperature of $3225^{+41}_{-40}$ K. We validated the planets using TESS data, ground-based multi-wavelength photometry from many ground-based facilities, as well as high-resolution AO observations from Keck/NIRC2. TOI-6002 b has a radius of $1.65^{+0.22}_{-0.19}$ \re\ and receives $1.77^{+0.16}_{-0.11} S_\oplus$. TOI-5713 b has a radius of $1.77_{-0.11}^{+0.13} \re$ and receives $2.42\pm{0.11} S_\oplus$. Both planets are located near the radius valley and near the inner edge of the habitable zone of their host stars, which makes them intriguing targets for future studies to understand the formation and evolution of small planets around M-dwarf stars.
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- 2024
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9. Cost-effectiveness of stereotactic laser ablation (SLA) for brain tumors
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Sanjay Dhawan, Jiri Bartek, and Clark C. Chen
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stereotactic laser ablation (sla) ,thermal therapy ,cost effectiveness ,brain tumors ,glioblastoma ,metastases ,Medical technology ,R855-855.5 - Abstract
Background Stereotactic laser ablation(SLA) or laser interstitial thermal therapy (LITT) has been increasingly adopted as a treatment for primary and metastatic brain cancers. Here, we examined the published economic assessments of SLA, and review the current state of knowledge. Methods The PubMed database was queried for articles investigating the cost-effectiveness of LITT. 3068 articles were screened. Two studies that met the inclusion criteria were included in this review. Results Cost-effectiveness analysis(CEA) favored SLA(n = 8) relative to craniotomy (n = 92) for brain metastases (Mean difference [MD]=−US$6522; 95% confidence interval (CI) –$11,911 to –$1133; p = 0.02). SLA (n = 19) was found to be cost equivalent to craniotomy (n = 248) (MD=–US$1669; 95%(CI) –$8192 to $4854, p = 0.62) for primary brain tumors in general. CEA favored SLA for a subset of primary brain cancers. SLA was found to be cost-effective for difficult to access high-grade gliomas(HGG). When compared to ‘other’ existing treatments, the cost per life-years gained (LYG) through SLA was ∼$29,340, a threshold below that set for new technology adaptation in the U.S. Factors contributing to these cost-effectiveness were: (1) SLA of HGGs was associated with three-months prolongation in survival; (2) SLA of brain metastasis was associated with (i) shorter average length of stay (SLA: 2.3 days; craniotomy: 4.7 days), (ii) decreased discharge to inpatient rehabilitation facility (IRF), skilled nursing facility (SNF), or home healthcare (SLA: 14.8%; craniotomy: 52%), (iii) lowered 30-day readmission (SLA: 0%; craniotomy: 14.1%). Conclusion There is limited data on the cost-effectiveness of SLA. In the available literature, SLA compared favorably to craniotomy in terms of cost-effectiveness as a treatment for primary and metastatic brain cancers.
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- 2020
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10. Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells
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Tomoyuki Koga, Isaac A. Chaim, Jorge A. Benitez, Sebastian Markmiller, Alison D. Parisian, Robert F. Hevner, Kristen M. Turner, Florian M. Hessenauer, Matteo D’Antonio, Nam-phuong D. Nguyen, Shahram Saberi, Jianhui Ma, Shunichiro Miki, Antonia D. Boyer, John Ravits, Kelly A. Frazer, Vineet Bafna, Clark C. Chen, Paul S. Mischel, Gene W. Yeo, and Frank B. Furnari
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Science - Abstract
The dearth of glioblastoma model systems that accurately recapitulate the disease remains a challenge. Here, the authors develop cancer avatars using genetically engineered human induced pluripotent cells.
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- 2020
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11. Learning Curve Associated with ClearPoint Neuronavigation System: A Case Series
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Birra R. Taha, Christian R. Osswald, Matthew Rabon, Carolina Sandoval Garcia, Daniel J. Guillaume, Xiao Wong, Andrew S. Venteicher, David P. Darrow, Michael C. Park, Robert A. McGovern, Cornelius H. Lam, and Clark C. Chen
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ClearPoint ,IMRIS ,Intracranial biopsy ,Intracranial laser ablation ,Neurosurgery ,Targeted drug delivery ,Surgery ,RD1-811 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background: The ClearPoint neuronavigation system affords real-time magnetic resonance imaging (MRI) guidance during stereotactic procedures. While such information confers potential clinical benefits, additional operative time may be needed. Methods: We conducted a retrospective analysis of procedural time associated with ClearPoint Stereotaxis, with hypothesis that this procedural time is comparable with that associated with frame-based biopsy. Results: Of the 52 patients evaluated, the total procedural time for ClearPoint stereotactic biopsy averaged 150.0 (±40.4) minutes, of which 111.5 (±16.5) minutes were dedicated to real-time MRI acquisition and trajectory adjustment. This procedural time is within the range of those reported for frame-based needle biopsies. Approximately 5 minutes of the procedural time is related to the mounting of the MRI-compatible stereotactic frame. Based on the procedural time, we estimate that four cases are required in the learning curve to achieve this efficiency. Efficient algorithms for distortion corrections and isocenter localization are keys to ClearPoint stereotaxis. Routine quality assurance/control after each MRI software update and institutional information technology maintenance also contribute to efficiency. Real-time MRI is essential for definitive diagnosis in select cases. Conclusions: ClearPoint stereotactic needle biopsy can be achieved in time frames comparable to frame-based stereotaxis. However, procedural efficiency requires 4 “learning curve” cases as well as vigilance in terms of MR distortion correction and information technology maintenance.
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- 2022
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12. Fusion Genes Altered in Adult Malignant Gliomas
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Gan You, Xing Fan, Huimin Hu, Tao Jiang, and Clark C. Chen
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fusion gene ,high-grade glioma ,glioblastoma ,targeted therapy ,personalized cancer medicine ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Malignant gliomas are highly heterogeneous brain tumors in molecular genetic background. Despite the many recent advances in the understanding of this disease, patients with adult high-grade gliomas retain a notoriously poor prognosis. Fusions involving oncogenes have been reported in gliomas and may serve as novel therapeutic targets to date. Understanding the gene fusions and how they regulate oncogenesis and malignant progression will contribute to explore new approaches for personalized treatment. By now, studies on gene fusions in gliomas remain limited. However, some current clinical trials targeting fusion genes have presented exciting preliminary findings. The aim of this review is to summarize all the reported fusion genes in high-grade gliomas so far, discuss the characterization of some of the most popular gene fusions occurring in malignant gliomas, as well as their function in tumorigenesis, and the underlying clinical implication as therapeutic targets.
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- 2021
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13. Stereotactic and endoscopic treatment of the trapped temporal horn
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Clark C. Chen, David Freeman, and Peter C. Warnke
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Stereotaxis ,Endoscopy ,Ventriculomegaly ,Shunt ,Surgery ,RD1-811 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background: Current treatment of a trapped temporal horn consists primarily of ventriculo-peritoneal (VP) shunting. Objective: As a less invasive alternative, we examined an endoscopic-stereotactic approach to connect the trapped temporal horn with the prepontine cistern. Methods: Six patients with different etiology of entrapment were studied. Using frame-based stereotaxy, image fusion and endoscopy a Rickham catheter was placed connecting both compartments. Results: After median follow-up of 22.1 ± 7.8 months all patients improved symptomatically and the size of the temporal horn was normalized. No morbidity was encountered. Conclusion: Endoscopic-stereotactic internal shunting of trapped temporal horns into the prepontine cistern can be done with favorable risk profile, and it offers an elegant alternative to traditional VP shunting, by avoiding the inherent complications.
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- 2021
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14. Virus-specific memory T cells populate tumors and can be repurposed for tumor immunotherapy
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Pamela C. Rosato, Sathi Wijeyesinghe, J. Michael Stolley, Christine E. Nelson, Rachel L. Davis, Luke S. Manlove, Christopher A. Pennell, Bruce R. Blazar, Clark C. Chen, Melissa A. Geller, Vaiva Vezys, and David Masopust
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Science - Abstract
The immunosuppressive tumor environment and the lack of functional anti-tumor immunity are major limiting factors in immunotherapy. Here the authors show that human and mouse tumors are infiltrated by virus-specific memory T cells, which can be harnessed by viral peptides to induce local and systemic anti-tumor immunity and synergize with checkpoint blockade.
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- 2019
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15. The Discovery and Follow-up of Four Transiting Short-period Sub-Neptunes Orbiting M dwarfs
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Hori, Y., Fukui, A., Hirano, T., Narita, N., de Leon, J. P., Ishikawa, H. T., Hartman, J. D., Morello, G., García, N. Abreu, Hernández, L. Álvarez, Béjar, V. J. S., Calatayud-Borras, Y., Carleo, I., Enoc, G., Esparza-Borges, E., Fukuda, I., Galán, D., Geraldía-González, S., Hayashi, Y., Ikoma, M., Ikuta, K., Isogai, K., Kagetani, T., Kawai, Y., Kawauchi, K., Kimura, T., Kodama, T., Korth, J., Kusakabe, N., Laza-Ramos, A., Livingston, J. H., Luque, R., Miyakawa, K., Mori, M., Torres, S. Muñoz, Murgas, F., Orell-Miquel, J., Palle, E., Parviainen, H., Peláez-Torres, A., Puig-Subirá, M., Sánchez-Benavente, M., Sosa-Guillén, P., Stangret, M., Terada, Y., Watanabe, N., Bakos, G. Á., Barkaoui, K., Beichman, C., Benkhaldoun, Z., Boyle, A. W., Ciardi, D. R., Clark, C. A., Collins, K. A., Collins, K. I., Conti, D. M., Crossfield, I. J. M., Everett, M. E., Furlan, E., Ghachoui, M., Gillon, M., Gonzales, E. J., Higuera, J., Horne, K., Howell, S. B., Jehin, E., Lester, K. V., Lund, M. B., Matson, R., Matthews, E. C., Pozuelos, F. J., Safonov, B. S., Schlieder, J. E., Schwarz, R. P., Sefako, R., Srdoc, G., Strakhov, I. A., Waalkes, W. C., Ziegler, C., Charbonneau, D., Essack, Z., Timmermans, M., Guerrero, N. M., Harakawa, H., Hedges, C., Ishizuka, M., Jenkins, J. M., Konishi, M., Kotani, T., Kudo, T., Kurokawa, T., Kuzuhara, M., Nishikawa, J., Omiya, M., Ricker, G. R., Seager, S., Serizawa, T., Striegel, S., Tamura, M., Ueda, A., Vanderspek, R., Vievard, S., and Winn, J. N.
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Astrophysics - Earth and Planetary Astrophysics - Abstract
Sub-Neptunes with $2-3R_\oplus$ are intermediate in size between rocky planets and Neptune-sized planets. The orbital properties and bulk compositions of transiting sub-Neptunes provide clues to the formation and evolution of close-in small planets. In this paper, we present the discovery and follow-up of four sub-Neptunes orbiting M dwarfs (TOI-782, TOI-1448, TOI-2120, and TOI-2406), three of which were newly validated by ground-based follow-up observations and statistical analyses. TOI-782 b, TOI-1448 b, TOI-2120 b, and TOI-2406 b have radii of $R_\mathrm{p} = 2.740^{+0.082}_{-0.079}\,R_\oplus$, $2.769^{+0.073}_{-0.068}\,R_\oplus$, $2.120\pm0.067\,R_\oplus$, and $2.830^{+0.068}_{-0.066}\,R_\oplus$ and orbital periods of $P = 8.02$, $8.11$, $5.80$, and $3.08$\,days, respectively. Doppler monitoring with Subaru/InfraRed Doppler instrument led to 2$\sigma$ upper limits on the masses of $<19.1\ M_\oplus$, $<19.5\ M_\oplus$, $<6.8\ M_\oplus$, and $<15.6\ M_\oplus$ for TOI-782 b, TOI-1448 b, TOI-2120 b, and TOI-2406 b, respectively. The mass-radius relationship of these four sub-Neptunes testifies to the existence of volatile material in their interiors. These four sub-Neptunes, which are located above the so-called ``radius valley'', are likely to retain a significant atmosphere and/or an icy mantle on the core, such as a water world. We find that at least three of the four sub-Neptunes (TOI-782 b, TOI-2120 b, and TOI-2406 b) orbiting M dwarfs older than 1 Gyr, are likely to have eccentricities of $e \sim 0.2-0.3$. The fact that tidal circularization of their orbits is not achieved over 1 Gyr suggests inefficient tidal dissipation in their interiors., Comment: Accepted for publication in AJ, 32 pages, 17 figures, 6 tables
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- 2024
16. TRAPUM search for pulsars in supernova remnants and pulsar wind nebulae -- I. Survey description and initial discoveries
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Turner, J. D., Stappers, B. W., Carli, E., Barr, E. D., Becker, W., Behrend, J., Breton, R. P., Buchner, S., Burgay, M., Champion, D. J., Chen, W., Clark, C. J., Horn, D. M., Keane, E. F., Kramer, M., ünkel, L. K, Levin, L., Men, Y. P., Padmanabh, P. V., Ridolfi, A., and Krishnan, V. Venkatraman
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
We present the description and initial results of the TRAPUM (TRAnsients And PUlsars with MeerKAT) search for pulsars associated with supernova remnants (SNRs), pulsar wind nebulae and unidentified TeV emission. The list of sources to be targeted includes a large number of well-known candidate pulsar locations but also new candidate SNRs identified using a range of criteria. Using the 64-dish MeerKAT radio telescope, we use an interferometric beamforming technique to tile the potential pulsar locations with coherent beams which we search for radio pulsations, above a signal-to-noise of 9, down to an average flux density upper limit of 30 $\mu$Jy. This limit is target-dependent due to the contribution of the sky and nebula to the system temperature. Coherent beams are arranged to overlap at their 50 per cent power radius, so the sensitivity to pulsars is not degraded by more than this amount, though realistically averages around 65 per cent if every location in the beam is considered. We report the discovery of two new pulsars; PSR J1831$-$0941 is an adolescent pulsar likely to be the plerionic engine of the candidate PWN G20.0+0.0, and PSR J1818$-$1502 appears to be an old and faint pulsar that we serendipitously discovered near the centre of a SNR already hosting a compact central object. The survey holds importance for better understanding of neutron star birth rates and the energetics of young pulsars., Comment: 17 pages, 6 figures, 3 tables. Accepted for publication in Monthly Notices of the Royal Astronomical Society
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- 2024
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17. Discovery and timing of ten new millisecond pulsars in the globular cluster Terzan 5
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Padmanabh, P. V., Ransom, S. M., Freire, P. C. C., Ridolfi, A., Taylor, J. D., Choza, C., Clark, C. J., Abbate, F., Bailes, M., Barr, E. D., Buchner, S., Burgay, M., DeCesar, M. E., Chen, W., Corongiu, A., Champion, D. J., Dutta, A., Geyer, M., Hessels, J. W. T., Kramer, M., Possenti, A., Stairs, I. H., Stappers, B. W., Krishnan, V. Venkatraman, Vleeschower, L., and Zhang, L.
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
We report the discovery of ten new pulsars in the globular cluster Terzan 5 as part of the Transients and Pulsars with MeerKAT (TRAPUM) Large Survey Project. We observed Terzan 5 at L-band (856--1712 MHz) with the MeerKAT radio telescope for four hours on two epochs, and performed acceleration searches of 45 out of 288 tied-array beams covering the core of the cluster. We obtained phase-connected timing solutions for nine discoveries, covering nearly two decades of archival observations from the Green Bank Telescope for all but one. Highlights include PSR J1748$-$2446ao which is an eccentric ($e = 0.32$) wide-orbit (orbital period $P_{\rm b} = 57.55$ d) system. We were able to measure the rate of advance of periastron ($\dot{\omega}$) for this system allowing us to determine a total mass of $3.17 \pm \, 0.02\, \rm M_{\odot}$. With a minimum companion mass ($M_{\rm c}$) of $\sim 0.8\, \rm M_{\odot}$, PSR J1748$-$2446ao is a candidate double neutron star (DNS) system. If confirmed to be a DNS, it would be the fastest spinning pulsar ($P = 2.27$ ms) and the longest orbital period measured for any known DNS system. PSR J1748$-$2446ap has the second highest eccentricity for any recycled pulsar ($e \sim 0.905$) and for this system we can measure the total mass ($1.997 \pm 0.006\, \rm M_{\odot}$) and also estimate the individual pulsar and companion masses. PSR J1748$-$2446ar is an eclipsing redback (minimum $M_{\rm c} \sim 0.34\, \rm M_{\odot}$) system whose properties confirm it to be the counterpart to a previously published source identified in radio and X-ray imaging. With these discoveries, the total number of confirmed pulsars in Terzan 5 is 49, the highest for any globular cluster so far. These discoveries further enhance the rich set of pulsars known in Terzan 5 and provide scope for a deeper understanding of binary stellar evolution, cluster dynamics and ensemble population studies., Comment: 23 pages, 11 figures, 5 tables, published in A&A
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- 2024
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18. A targeted radio pulsar survey of redback candidates with MeerKAT
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Thongmeearkom, T., Clark, C. J., Breton, R. P., Burgay, M., Nieder, L., Freire, P. C. C., Barr, E. D., Stappers, B. W., Ransom, S. M., Buchner, S., Calore, F., Champion, D. J., Cognard, I., Grießmeier, J. -M., Kramer, M., Levin, L., Padmanabh, P. V., Possenti, A., Ridolfi, A., Krishnan, V. Venkatraman, and Vleeschower, L.
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
Redbacks are millisecond pulsar binaries with low mass, irradiated companions. These systems have a rich phenomenology that can be used to probe binary evolution models, pulsar wind physics, and the neutron star mass distribution. A number of high-confidence redback candidates have been identified through searches for variable optical and X-ray sources within the localisation regions of unidentified but pulsar-like Fermi-LAT gamma-ray sources. However, these candidates remain unconfirmed until pulsations are detected. As part of the TRAPUM project, we searched for radio pulsations from six of these redback candidates with MeerKAT. We discovered three new radio millisecond pulsars, PSRs J0838$-$2527, J0955$-$3947 and J2333$-$5526, confirming their redback nature. PSR J0838$-$2827 remained undetected for two years after our discovery despite repeated observations, likely due to evaporated material absorbing the radio emission for long periods of time. While, to our knowledge, this system has not undergone a transition to an accreting state, the disappearance, likely caused by extreme eclipses, illustrates the transient nature of spider pulsars and the heavy selection bias in uncovering their radio population. Radio timing enabled the detection of gamma-ray pulsations from all three pulsars, from which we obtained 15-year timing solutions. All of these sources exhibit complex orbital period variations consistent with gravitational quadrupole moment variations in the companion stars. These timing solutions also constrain the binary mass ratios, allowing us to narrow down the pulsar masses. We find that PSR J2333$-$5526 may have a neutron star mass in excess of 2 M$_{\odot}$., Comment: 19 pages, 7 figures, accepted for publication in MNRAS
- Published
- 2024
19. 4. Pierce
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Clark C. Spence
- Published
- 2016
20. Cover
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Clark C. Spence
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- 2016
21. Title Page, Copyright
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Clark C. Spence
- Published
- 2016
22. 16. Aftermath: The Cleanup
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Clark C. Spence
- Published
- 2016
23. 5. Florence
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Clark C. Spence
- Published
- 2016
24. Index
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Clark C. Spence
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- 2016
25. 17. Overview
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Clark C. Spence
- Published
- 2016
26. 11. Warren
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Clark C. Spence
- Published
- 2016
27. Brief Bibliographic Essay
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Clark C. Spence
- Published
- 2016
28. Epilogue
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Clark C. Spence
- Published
- 2016
29. 13. Dredging Rare Metals
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Clark C. Spence
- Published
- 2016
30. 14. Other Dredge Grounds and Snake-Salmon Rivers
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Clark C. Spence
- Published
- 2016
31. 15. The Struggle for Dredge Control
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Clark C. Spence
- Published
- 2016
32. 7. Stanley Basin and Yankee Fork
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Clark C. Spence
- Published
- 2016
33. 1. Early Snake River Boom
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Clark C. Spence
- Published
- 2016
34. 12. Boise Basin
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Clark C. Spence
- Published
- 2016
35. 9. South and Middle Forks of the Boise River
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Clark C. Spence
- Published
- 2016
36. 10. The Yukon Dredge
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Clark C. Spence
- Published
- 2016
37. 3. The Burroughs Brothers
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Clark C. Spence
- Published
- 2016
38. 6. Elk City and Newsome
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Clark C. Spence
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- 2016
39. 2. The Black Sands Craze
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Clark C. Spence
- Published
- 2016
40. 8. Salmon City and Leesburg
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Clark C. Spence
- Published
- 2016
41. Acknowledgments
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Clark C. Spence
- Published
- 2016
42. Exosomal Carboxypeptidase E (CPE) and CPE-shRNA-Loaded Exosomes Regulate Metastatic Phenotype of Tumor Cells
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Sangeetha Hareendran, Bassam Albraidy, Xuyu Yang, Aiyi Liu, Anne Breggia, Clark C. Chen, and Y. Peng Loh
- Subjects
cancer proliferation ,hepatocellular carcinoma ,metastasis ,engineered exosomes ,diagnostic biomarker ,cancer therapy ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Background: Exosomes promote tumor growth and metastasis through intercellular communication, although the mechanism remains elusive. Carboxypeptidase E (CPE) supports the progression of different cancers, including hepatocellular carcinoma (HCC). Here, we investigated whether CPE is the bioactive cargo within exosomes, and whether it contributes to tumorigenesis, using HCC cell lines as a cancer model. Methods: Exosomes were isolated from supernatant media of cancer cells, or human sera. mRNA and protein expression were analyzed using PCR and Western blot. Low-metastatic HCC97L cells were incubated with exosomes derived from high-metastatic HCC97H cells. In other experiments, HCC97H cells were incubated with CPE-shRNA-loaded exosomes. Cell proliferation and invasion were assessed using MTT, colony formation, and matrigel invasion assays. Results: Exosomes released from cancer cells contain CPE mRNA and protein. CPE mRNA levels are enriched in exosomes secreted from high- versus low-metastastic cells, across various cancer types. In a pilot study, significantly higher CPE copy numbers were found in serum exosomes from cancer patients compared to healthy subjects. HCC97L cells, treated with exosomes derived from HCC97H cells, displayed enhanced proliferation and invasion; however, exosomes from HCC97H cells pre-treated with CPE-shRNA failed to promote proliferation. When HEK293T exosomes loaded with CPE-shRNA were incubated with HCC97H cells, the expression of CPE, Cyclin D1, a cell-cycle regulatory protein and c-myc, a proto-oncogene, were suppressed, resulting in the diminished proliferation of HCC97H cells. Conclusions: We identified CPE as an exosomal bioactive molecule driving the growth and invasion of low-metastatic HCC cells. CPE-shRNA loaded exosomes can inhibit malignant tumor cell proliferation via Cyclin D1 and c-MYC suppression. Thus, CPE is a key player in the exosome transmission of tumorigenesis, and the exosome-based delivery of CPE-shRNA offers a potential treatment for tumor progression. Notably, measuring CPE transcript levels in serum exosomes from cancer patients could have potential liquid biopsy applications.
- Published
- 2022
- Full Text
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43. Plasma Biomarker for Post-concussive Syndrome: A Pilot Study Using an Alternating Current Electro-Kinetic Platform
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Jean M. Lewis, Sanjay Dhawan, Augustine C. Obirieze, Benjamin Sarno, Johnny Akers, Michael J. Heller, and Clark C. Chen
- Subjects
alternating current electrokinetics ,traumatic brain injury ,biomarkers ,extracellular vesicles ,concussion ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background: Technology platforms that afford biomarker discovery in patients suffering from traumatic brain injury (TBI) remain an unmet medical need. Here, we describe an observational pilot study to explore the utility of an alternating current electrokinetic (ACE) microchip device in this context.Methods: Blood samples were collected from participating subjects with and without minor TBI. Plasma levels of glial fibrillary acidic protein (GFAP), Tau, ubiquitin C-terminal hydrolase L1 (UCH-L1), and cell-free DNA (cfDNA) were determined in subjects with and without minor TBI using ACE microchip device followed by on-chip immunofluorescent analysis. Post-concussive symptoms were assessed using the Rivermead Post Concussion Symptoms Questionnaire (RPCSQ) at one-month follow-up.Results: Highest levels of GFAP, UCH-L1, and Tau were seen in two minor TBI subjects with abnormality on head computed tomography (CT). In patients without abnormal head CT, Tau and GFAP levels discriminated between plasma from minor-TBI and non-TBI patients, with sensitivity and specificity of 64–72 and 50%, respectively. Plasma GFAP, UCH-L1, and Tau strongly correlated with the cumulative RPCSQ score. Plasma UCH-L1 and GFAP exhibited highest correlation to sensitivity to noise and light (r = 0.96 and 0.91, respectively, p < 0.001). Plasma UCH-L1 and Tau showed highest correlation with headache (r = 0.74 and 0.78, respectively, p < 0.001), sleep disturbance (r = 0.69 and 0.84, respectively, p < 0.001), and cognitive symptoms, including forgetfulness (r = 0.76 and 0.74, respectively, p < 0.001), poor concentration (r = 0.68 and 0.76, respectively, p < 0.001), and time required for information processing (r = 0.77 and 0.81, respectively, p < 0.001). cfDNA exhibited a strong correlation with depression (r = 0.79, p < 0.01) and dizziness (r = 0.69, p < 0.01). While cfDNA demonstrated positive correlation with dizziness and depression (r = 0.69 and 0.79, respectively, p < 0.001), no significant correlation was observed between cumulative RPCSQ and cfDNA (r = 0.07, p = 0.81).Conclusion: We provide proof-of-principle results supporting the utility of ACE microchip for plasma biomarker analysis in patients with minor TBI.
- Published
- 2020
- Full Text
- View/download PDF
44. Radiation-induced extracellular vesicle (EV) release of miR-603 promotes IGF1-mediated stem cell state in glioblastomas
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Valya Ramakrishnan, Beibei Xu, Johnny Akers, Thien Nguyen, Jun Ma, Sanjay Dhawan, Jianfang Ning, Ying Mao, Wei Hua, Efrosini Kokkoli, Frank Furnari, Bob S. Carter, and Clark C. Chen
- Subjects
miR-603 ,IGF1 ,MGMT ,Glioblastoma stem-cell state ,Extracellular vesicles ,Acquired radiation resistance ,Medicine ,Medicine (General) ,R5-920 - Abstract
Background: Recurrence after radiation therapy is nearly universal for glioblastomas, the most common form of adult brain cancer. The study aims to define clinically pertinent mechanisms underlying this recurrence. Methods: microRNA (miRNA) profiling was performed using matched pre- and post-radiation treatment glioblastoma specimens from the same patients. All specimens harbored unmethylated O6-methylguanine-DNA methyltransferase promoters (umMGMT) and wild-type isocitrate dehydrogenase (wtIDH). The most altered miRNA, miR-603, was characterized. Findings: While nearly all miRNAs remained unchanged after treatment, decreased levels of few, select miRNAs in the post-treatment specimens were observed, the most notable of which involved miR-603. Unbiased profiling of miR-603 targets revealed insulin-like growth factor 1 (IGF1) and IGF1 receptor (IGF1R). Ionizing radiation (IR) induced cellular export of miR-603 through extracellular vesicle (EV) release, thereby de-repressing IGF1 and IGF1R. This de-repression, in turn, promoted cancer stem-cell (CSC) state and acquired radiation resistance in glioblastomas. Export of miR-603 additionally de-repressed MGMT, a DNA repair protein responsible for detoxifying DNA alkylating agents, to promote cross-resistance to these agents. Ectopic miR-603 expression overwhelmed cellular capacity for miR-603 export and synergized with the tumoricidal effects of IR and DNA alkylating agents. Interpretation: Profiling of matched pre- and post-treatment glioblastoma specimens revealed altered homeostasis of select miRNAs in response to radiation. Radiation-induced EV export of miR-603 simultaneously promoted the CSC state and up-regulated DNA repair to promote acquired resistance. These effects were abolished by exogenous miR-603 expression, suggesting potential for clinical translation. Funding: NIH 1R01NS097649-01, 9R44GM128223-02, 1R01CA240953-01, the Doris Duke Charitable Foundation Clinical Scientist Development Award, The Sontag Foundation Distinguished Scientist Award, the Kimmel Scholar Award, and BWF 1006774.01 (C.C.C).
- Published
- 2020
- Full Text
- View/download PDF
45. Photodynamic Therapy for the Treatment of Glioblastoma
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Samuel W. Cramer and Clark C. Chen
- Subjects
brain tumor ,photodynamic therapy (PDT) ,glioblastoma multiforme (GBM) ,tumor-targeting ,neurosurgery ,Surgery ,RD1-811 - Abstract
Glioblastoma is the most common form of adult brain cancer and remains one of the deadliest of human cancers. The current standard-of-care involves maximal tumor resection followed by treatment with concurrent radiation therapy and the chemotherapy temozolomide. Recurrence after this therapy is nearly universal within 2 years of diagnosis. Notably, >80% of recurrence is found in the region adjacent to the resection cavity. The need for improved local control in this region, thus remains unmet. The FDA approval of 5-aminolevulinic acid (5-ALA) for fluorescence guided glioblastoma resection renewed interests in leveraging this agent as a means to administer photodynamic therapy (PDT). Here we review the general principles of PDT as well as the available literature on PDT as a glioblastoma therapeutic platform.
- Published
- 2020
- Full Text
- View/download PDF
46. Survival patterns of oligoastrocytoma patients: A surveillance, epidemiology and end results (SEER) based analysis
- Author
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Tyler A. Lanman, BS, Jason N. Compton, BS, Kate T. Carroll, BA, Brian R. Hirshman, MD, Mir A. Ali, BS, Bryson Lochte, BA, Bob Carter, MD PhD, and Clark C. Chen, MD PhD
- Subjects
Surgery ,RD1-811 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Objective: The 2016 update to the World Health Organization (WHO) states that oligoastrocytoma (OA) should be classified as either oligodendroglioma or astrocytoma based on molecular biomarkers. We examined the survival patterns of patients diagnosed with OA in the Surveillance, Epidemiology and End Results (SEER) registry in the context of this revised scheme. Methods: We used data from the SEER database (1999–2010) to identify patients diagnosed with WHO grade II astrocytoma (A2, n = 4113), WHO grade II oligodendroglioma (O2, n = 2378), and oligoastrocytoma (OA, n = 1505). Survival comparison was performed using Kaplan-Meier analysis and multivariate Cox proportional hazards analysis. Results: Similar to O2 patients, gross total resection (GTR) was not associated with improved survival in OA patients. In contrast, GTR is associated with improved survival in A2 patients. For OA patients who did not undergo surgery or radiation therapy (RT), those with tumors
- Published
- 2018
- Full Text
- View/download PDF
47. A 350-MHz Green Bank Telescope Survey of Unassociated Fermi LAT Sources: Discovery and Timing of Ten Millisecond Pulsars
- Author
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Bangale, P., Bhattacharyya, B., Camilo, F., Clark, C. J., Cognard, I., DeCesar, M. E., Ferrara, E. C., Gentile, P., Guillemot, L., Hessels, J. W. T., Johnson, T. J., Kerr, M., McLaughlin, M. A., Nieder, L., Ransom, S. M., Ray, P. S., Roberts, M. S. E., Roy, J., Sanpa-Arsa, S., Theureau, G., and Wolff, M. T.
- Subjects
Astrophysics - High Energy Astrophysical Phenomena - Abstract
We have searched for radio pulsations towards 49 Fermi Large Area Telescope (LAT) 1FGL Catalog $\gamma$-ray sources using the Green Bank Telescope at 350 MHz. We detected 18 millisecond pulsars (MSPs) in blind searches of the data; 10 of these were discoveries unique to our survey. Sixteen are binaries, with eight having short orbital periods $P_B < 1$ day. No radio pulsations from young pulsars were detected, although three targets are coincident with apparently radio-quiet $\gamma$-ray pulsars discovered in LAT data. Here, we give an overview of the survey and present radio and $\gamma$-ray timing results for the 10 MSPs discovered. These include the only isolated MSP discovered in our survey and six short-$P_B$ binary MSPs. Of these, three have very low-mass companions ($M_c$ $\ll$ 0.1M$_{\odot}$) and hence belong to the class of black widow pulsars. Two have more massive, non-degenerate companions with extensive radio eclipses and orbitally modulated X-ray emission consistent with the redback class. Significant $\gamma$-ray pulsations have been detected from nine of the discoveries. This survey and similar efforts suggest that the majority of Galactic $\gamma$-ray sources at high Galactic latitudes are either MSPs or relatively nearby non-recycled pulsars, with the latter having on average a much smaller radio/$\gamma$-ray beaming ratio as compared to MSPs. It also confirms that past surveys suffered from an observational bias against finding short-$P_B$ MSP systems., Comment: Accepted for publication in ApJ (25 pages, 15 figues, 4 tables)
- Published
- 2024
- Full Text
- View/download PDF
48. Targeted Liposomes Encapsulating miR-603 Complexes Enhance Radiation Sensitivity of Patient-Derived Glioblastoma Stem-Like Cells
- Author
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Ahmed M. Shabana, Beibei Xu, Zachary Schneiderman, Jun Ma, Clark C. Chen, and Efrosini Kokkoli
- Subjects
stealth liposomes ,microRNA delivery ,targeting integrin α5β1 ,miR-603 ,glioblastoma stem-cell state ,radiation therapy ,Pharmacy and materia medica ,RS1-441 - Abstract
Despite potential for clinical efficacy, therapeutic delivery of microRNAs (miRNA) remains a major translational barrier. Here, we explore a strategy for miRNA delivery in the treatment of glioblastoma, the most common form of adult brain cancer, that involves complexation of miRNA with polyethylenimine (PEI) and encapsulation in targeted liposomes. miRNA 603 (miR-603) is a master regulatory miRNA that suppresses glioblastoma radiation resistance through down-regulation of insulin-like growth factor 1 (IGF1) signaling. miR-603 was complexed with PEI, a cationic polymer, and encapsulated into liposomes decorated with polyethylene glycol (PEG) and PR_b, a fibronectin-mimetic peptide that specifically targets the α5β1 integrin that is overexpressed in glioblastomas. Cultured patient-derived glioblastoma cells internalized PR_b-functionalized liposomes but not the non-targeted liposomes. The integrin targeting and complexation of the miRNA with PEI were associated with a 22-fold increase in intracellular miR-603 levels, and corresponding decreases in IGF1 and IGF1 receptor (IGF1R) mRNA expression. Moreover, treatment of glioblastoma cells with the PR_b liposomes encapsulating miR-603/PEI sensitized the cells to ionizing radiation (IR), a standard of care treatment for glioblastomas. These results suggest that PR_b-functionalized PEGylated liposomes encapsulating miR-603/PEI complexes hold promise as a therapeutic platform for glioblastomas.
- Published
- 2021
- Full Text
- View/download PDF
49. Coding and noncoding landscape of extracellular RNA released by human glioma stem cells
- Author
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Zhiyun Wei, Arsen O. Batagov, Sergio Schinelli, Jintu Wang, Yang Wang, Rachid El Fatimy, Rosalia Rabinovsky, Leonora Balaj, Clark C. Chen, Fred Hochberg, Bob Carter, Xandra O. Breakefield, and Anna M. Krichevsky
- Subjects
Science - Abstract
While circulating DNA has been extensively explored as a potential cancer biomarker, RNA potential has been overlooked so far. Here the authors present a comprehensive analysis of extracellular RNA secreted by glioblastoma cells that could prove a valuable resource for biomarker discovery and a means of intercellular communication.
- Published
- 2017
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- View/download PDF
50. Clinical Course in Chronic Subdural Hematoma Patients Aged 18–49 Compared to Patients 50 Years and Above: A Multicenter Study and Meta-Analysis
- Author
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Jiri Bartek, Kristin Sjåvik, Sanjay Dhawan, Lisa M. Sagberg, Helena Kristiansson, Fredrik Ståhl, Petter Förander, Clark C. Chen, and Asgeir S. Jakola
- Subjects
chronic subdural hematoma ,young ,neurosurgery ,symptoms ,clinical course ,morbidity ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Objective: Chronic Subdural Hematoma (cSDH) is primarily a disease of elderly, and is rare in patients
- Published
- 2019
- Full Text
- View/download PDF
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