140 results on '"Clarke AD"'
Search Results
2. Airborne measurements of HCl from the marine boundary layer to the lower stratosphere over the North Pacific Ocean during INTEX-B
- Author
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Kim, S, Huey, LG, Stickel, RE, Pierce, RB, Chen, G, Avery, MA, Dibb, JE, Diskin, GS, Sachse, GW, McNaughton, CS, Clarke, AD, Anderson, BE, and Blake, DR
- Abstract
Abstract. Gas phase HCl was measured from the marine boundary layer (MBL) to the lower stratosphere from the NASA DC-8 during five science flights (41 h) of the Intercontinental Chemical Transport Experiment-Phase B (INTEX-B) field campaign. In the upper troposphere/lower stratosphere (UT/LS, 8–12 km) HCl was observed to range from a few tens to 100 pptv due to stratospheric influence with a background tropospheric level of less than 2 pptv. In the 8–12 km altitude range, a simple analysis of the O3/HCl correlation shows that pure stratospheric and mixed tropospheric/stratospheric air masses were encountered 30% and 15% of the time, respectively. In the mid troposphere (4–8 km) HCl levels were usually below 2 pptv except for a few cases of stratospheric influence and were much lower than reported in previous work. These data indicate that background levels of HCl in the mid and upper troposphere are very low and confirm its use in these regions as a tracer of stratospheric ozone. However, a case study suggests that HCl may be produced in the mid troposphere by the dechlorination of dust aerosols. In the remote marine boundary layer HCl levels were consistently above 20 pptv (up to 140 pptv) and strongly correlated with HNO3. Cl atom levels were estimated from the background level of HCl in the MBL. This analysis suggests a Cl concentration of ~3×103 atoms cm−3, which corresponds to the lower range of previous studies. Finally, the observed HCl levels are compared to predictions by the Real-time Air Quality Modeling System (RAQMS) to assess its ability to characterize the impact of stratospheric transport on the upper troposphere.
- Published
- 2008
3. Formaldehyde distribution over North America: Implications for satellite retrievals of formaldehyde columns and isoprene emission
- Author
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Millet, DB, Jacob, DJ, Turquety, S, Hudman, RC, Wu, S, Fried, A, Walega, J, Heikes, BG, Blake, DR, Singh, HB, Andersen, BE, and Clarke, AD
- Subjects
Meteorology & Atmospheric Sciences - Abstract
Formaldehyde (HCHO) columns measured from space provide constraints on emissions of volatile organic compounds (VOCs). Quantitative interpretation requires characterization of errors in HCHO column retrievals and relating these columns to VOC emissions. Retrieval error is mainly in the air mass factor (AMF) which relates fitted backscattered radiances to vertical columns and requires external information on HCHO, aerosols, and clouds. Here we use aircraft data collected over North America and the Atlantic to determine the local relationships between HCHO columns and VOC emissions, calculate AMFs for HCHO retrievals, assess the errors in deriving AMFs with a chemical transport model (GEOS-Chem), and draw conclusions regarding space-based mapping of VOC emissions. We show that isoprene drives observed HCHO column variability over North America; HCHO column data from space can thus be used effectively as a proxy for isoprene emission. From observed HCHO and isoprene profiles we find an HCHO molar yield from isoprene oxidation of 1.6 ± 0.5, consistent with current chemical mechanisms. Clouds are the primary error source in the AMF calculation; errors in the HCHO vertical profile and aerosols have comparatively little effect. The mean bias and 1σ uncertainty in the GEOS-Chem AMF calculation increase from
- Published
- 2006
4. Contribution of particulate nitrate to airborne measurements of total reactive nitrogen
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Miyazaki, Y, Kondo, Y, Takegawa, N, Weber, RJ, Koike, M, Kita, K, Fukuda, M, Ma, Y, Clarke, AD, Kapustin, VN, Flocke, F, Weinheimer, AJ, Zondlo, M, Eisele, FL, Blake, DR, and Liley, B
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Meteorology & Atmospheric Sciences - Abstract
Simultaneous measurements of speciated, total reactive nitrogen (NOy) and particulate NO3 (particle diameter
- Published
- 2005
5. Impacts of biomass burning in Southeast Asia on ozone and reactive nitrogen over the western Pacific in spring
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Kondo, Y, Morino, Y, Takegawa, N, Koike, M, Kita, K, Miyazaki, Y, Sachse, GW, Vay, SA, Avery, MA, Flocke, F, Weinheimer, AJ, Eisele, FL, Zondlo, MA, Weber, RJ, Singh, HB, Chen, G, Crawford, J, Blake, DR, Fuelberg, HE, Clarke, AD, Talbot, RW, Sandholm, ST, Browell, EV, Streets, DG, and Liley, B
- Subjects
biomass burning ,ozone ,NOy ,Meteorology & Atmospheric Sciences - Abstract
Aircraft measurements of ozone (O3) and its precursors (reactive nitrogen, CO, nonmethane hydrocarbons) were made over the western Pacific during the Transport and Chemical Evolution Over the Pacific (TRACE-P) campaign, which was conducted during February-April 2001. Biomass burning activity was high over Southeast Asia (SEA) during this period (dry season), and convective activity over SEA frequently transported air from the boundary layer to the free troposphere, followed by eastward transport to the sampling region over the western Pacific south of 30°N. This data set allows for systematic investigations of the chemical and physical processes in the outflow from SEA. Methyl chloride (CH3Cl) and CO are chosen as primary and secondary tracers, respectively, to gauge the degree of the impact of emissions of trace species from biomass burning. Biomass burning is found to be a major source of reactive nitrogen (NO x, PAN, HNO3, and nitrate) and O3 in this region from correlations of these species with the tracers. Changes in the abundance of reactive nitrogen during upward transport are quantified from the altitude change of the slopes of the correlations of these species with CO. NOx decreased with altitude due to its oxidation to HNO3. On the other hand, PAN was conserved during transport from the lower to the middle troposphere, consistent with its low water solubility and chemical stability at low temperatures. Large losses of HNO3 and nitrate, which are highly water soluble, occurred in the free troposphere, most likely due to wet removal by precipitation. This has been shown to be the major pathway of NOy loss in the middle troposphere. Increases in the mixing ratios of O3 and its precursors due to biomass burning in SEA are estimated using the tracers. Enhancements of CO and total reactive nitrogen (NOy), which are directly emitted from biomass burning, were largest at 2-4 km. At this altitude the increases in NOy and O3 were 810 parts per trillion by volume (pptv) and 26 parts per billion by volume (ppbv) above their background values of 240 pptv and 31 ppbv, respectively. The slope of the O3-CO correlation in biomass burning plumes was similar to those observed in fire plumes in northern Australia, Africa, and Canada. The O3 production efficiency (OPE) derived from the O3-CO slope and NOx/CO emission ratio (ER) is shown to be positively correlated with the C2H4 /NOx ER, indicating that the C2H4/NO x ER is a critical parameter in determining the OPE. Comparison of the net O3 flux across the western Pacific region and total O3 production due to biomass burning in SEA suggests that about 70% of O3 produced was transported to the western Pacific. Copyright 2004 by the American Geophysical Union.
- Published
- 2004
6. Evaluating regional emission estimates using the TRACE‐P observations
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Carmichael, GR, Tang, Y, Kurata, G, Uno, I, Streets, DG, Thongboonchoo, N, Woo, J‐H, Guttikunda, S, White, A, Wang, T, Blake, DR, Atlas, E, Fried, A, Potter, B, Avery, MA, Sachse, GW, Sandholm, ST, Kondo, Y, Talbot, RW, Bandy, A, Thorton, D, and Clarke, AD
- Subjects
Climate Action ,emission evaluation ,chemical transport model ,TRACE-P ,biomass burning ,Meteorology & Atmospheric Sciences - Published
- 2003
7. Characteristics and influence of biosmoke on the fine‐particle ionic composition measured in Asian outflow during the Transport and Chemical Evolution Over the Pacific (TRACE‐P) experiment
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Ma, Y, Weber, RJ, Lee, Y‐N, Orsini, DA, Maxwell‐Meier, K, Thornton, DC, Bandy, AR, Clarke, AD, Blake, DR, Sachse, GW, Fuelberg, HE, Kiley, CM, Woo, J‐H, Streets, DG, and Carmichael, GR
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Climate Action ,atmospheric aerosol ,biomass burning ,particle chemical composition ,Asian air quality ,Meteorology & Atmospheric Sciences - Published
- 2003
8. Impacts of aerosols and clouds on photolysis frequencies and photochemistry during TRACE-P: 2. Three-dimensional study using a regional chemical transport model
- Author
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Tang, YH, Carmichael, GR, Uno, I, Woo, JH, Kurata, G, Lefer, B, Shetter, RE, Huang, H, Anderson, BE, Avery, MA, Clarke, AD, and Blake, DR
- Subjects
photolysis rates ,chemical transport model ,TRACE-P ,photochemical process ,aerosols and clouds ,radiative influence ,Meteorology & Atmospheric Sciences - Published
- 2003
9. Peroxy radical behavior during the Transport and Chemical Evolution over the Pacific (TRACE-P) campaign as measured aboard the NASA P-3B aircraft
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Cantrell, CA, Edwards, GD, Stephens, S, Mauldin, RL, Zondlo, MA, Kosciuch, E, Eisele, FL, Shetter, RE, Lefer, BL, Hall, S, Flocke, F, Weinheimer, A, Fried, A, Apel, E, Kondo, Y, Blake, DR, Blake, NJ, Simpson, IJ, Bandy, AR, Thornton, DC, Heikes, BG, Singh, HB, Brune, WH, Harder, H, Martinez, M, Jacob, DJ, Avery, MA, Barrick, JD, Sachse, GW, Olson, JR, Crawford, JH, and Clarke, AD
- Subjects
Meteorology & Atmospheric Sciences - Abstract
Peroxy radical concentrations were measured aboard the NASA P-3B aircraft during the Transport and Chemical Evolution over the Pacific (TRACE-P) campaign in the spring of 2001 and varied in ways that depended on radical production rates and reactive nitrogen concentrations. Measurements of HO2, HO2 + RO2, and OH during this study allowed calculation of radical ratios, examination of functional relationships of these ratios on controlling variables, and comparison with numerical model estimations. Radical production terms show changes in relative contributions at low, middle, and high total production rates that are understandable in terms of systematic variations in the controlling components (trace gas concentrations and photolysis rate coefficients). Ozone tendency calculations indicate net ozone production in the western Pacific basin because the concentrations of critical precursor trace gases (e.g., NOx, hydrocarbons) are highest there. The dependence of ozone tendency follows the concentration of NO systematically. Peroxy radical levels on the two aircraft (HO2 + RO2 on the P-3B and HO2 on the DC-8) during two relatively short prescribed intercomparison periods were in good agreement in one instance and poorer in another given reasonable assumptions about the apportioning of radicals between HO2 and RO2. Recommended changes to CH2O photolysis quantum yields, HO2 self reaction, and O(1D) quenching kinetics lead to small changes (
- Published
- 2003
10. A record of atmospheric halocarbons during the twentieth century from polar firn air
- Author
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Butler, JH, Battle, M, Bender, ML, Montzka, SA, Clarke, AD, Saltzman, ES, Sucher, CM, Severinghaus, JP, and Elkins, JW
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General Science & Technology - Abstract
Measurements of trace gases in air trapped in polar firn (unconsolidated snow) demonstrate that natural sources of chlorofluorocarbons, halons, persistent chlorocarbon solvents and sulphur hexafluoride to the atmosphere are minimal or non-existent. Atmospheric concentrations of these gases, reconstructed back to the late nineteenth century, are consistent with atmospheric histories derived from anthropogenic emission rates and known atmospheric lifetimes. The measurements confirm the predominance of human activity in the atmospheric budget of organic chlorine, and allow the estimation of atmospheric histories of halogenated gases of combined anthropogenic and natural origin. The pre-twentieth-century burden of methyl chloride was close to that at present, while the burden of methyl bromide was probably over half of today's value.
- Published
- 1999
11. Distribution of halon‐1211 in the upper troposphere and lower stratosphere and the 1994 total bromine budget
- Author
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Wamsley, PR, Elkins, JW, Fahey, DW, Dutton, GS, Volk, CM, Myers, RC, Montzka, SA, Butler, JH, Clarke, AD, Fraser, PJ, Steele, LP, Lucarelli, MP, Atlas, EL, Schauffler, SM, Blake, DR, Rowland, FS, Sturges, WT, Lee, JM, Penkett, SA, Engel, A, Stimpfle, RM, Chan, KR, Weisenstein, DK, Ko, MKW, and Salawitch, RJ
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Meteorology & Atmospheric Sciences - Published
- 1998
12. X-Bolt unforeseen placement complication: case report
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Clarke, AD, primary, Herron, JBT, additional, and McVie, JL, additional
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- 2017
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13. Aerosol optical properties relevant to regional remote sensing of CCN activity and links to their organic mass fraction: airborne observations over Central Mexico and the US West Coast during MILAGRO/INTEX-B
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Shinozuka, Y., Clarke, Ad, Decarlo, Pf, Jose L Jimenez, Dunlea, Ej, Roberts, Gc, Tomlinson, Jm, Collins, Dr, Howell, Sg, Kapustin, Vn, Mcnaughton, Cs, and Zhou, J.
- Subjects
lcsh:Chemistry ,lcsh:QD1-999 ,lcsh:Physics ,lcsh:QC1-999 - Abstract
Remote sensing of cloud condensation nuclei (CCN) would help evaluate the indirect effects of tropospheric aerosols on clouds and climate. To assess its feasibility, we examined relationships of submicron aerosol composition to CCN activity and optical properties observed during the MILAGRO/INTEX-B aircraft campaigns. An indicator of CCN activity, κ, was calculated from hygroscopicity measured under saturation. κ for dry 100 nm particles decreased with increasing organic fraction of non-refractory mass of submicron particles (OMF) as 0.34–0.20×OMF over Central Mexico and 0.47–0.43×OMF over the US West Coast. These fits represent the critical dry diameter, centered near 100 nm for 0.2% supersaturation but varied as κ(−1/3), within measurement uncertainty (~20%). The decreasing trends of CCN activity with the organic content, evident also in our direct CCN counts, were consistent with previous ground and laboratory observations of highly organic particles. The wider range of OMF, 0–0.8, for our research areas means that aerosol composition will be more critical for estimation of CCN concentration than at the fixed sites previously studied. Furthermore, the wavelength dependence of extinction was anti-correlated with OMF as −0.70×OMF+2.0 for Central Mexico's urban and industrial pollution air masses, for unclear reasons. The Angstrom exponent of absorption increased with OMF, more rapidly under higher single scattering albedo, as expected for the interplay between soot and colored weak absorbers (some organic species and dust). Because remote sensing products currently use the wavelength dependence of extinction albeit in the column integral form and may potentially include that of absorption, these regional spectral dependencies are expected to facilitate retrievals of aerosol bulk chemical composition and CCN activity over Central Mexico.
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- 2009
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14. Visual search for a target against a 1/f(beta) continuous textured background.
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Clarke AD, Green PR, Chantler MJ, and Emrith K
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- 2008
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15. Women in medicine
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Vautin Jm, Saunders Ib, and Clarke Ad
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Physicians, Women ,Australia ,Female ,General Medicine - Published
- 1971
16. Absorption Angstrom Exponent in AERONET and related data as an indicator of aerosol composition
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Russell, Pb, Bergstrom, Rw, Shinozuka, Y., Clarke, Ad, Peter DeCarlo, Jimenez, Jl, Livingston, Jm, Redemann, J., Dubovik, O., and Strawa, A.
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lcsh:Chemistry ,lcsh:QD1-999 ,lcsh:Physics ,lcsh:QC1-999 - Abstract
Recent results from diverse air, ground, and laboratory studies using both radiometric and in situ techniques show that the fractions of black carbon, organic matter, and mineral dust in atmospheric aerosols determine the wavelength dependence of absorption (often expressed as Absorption Angstrom Exponent, or AAE). Taken together, these results hold promise of improving information on aerosol composition from remote measurements. The main purpose of this paper is to show that AAE values for an Aerosol Robotic Network (AERONET) set of retrievals from Sun-sky measurements describing full aerosol vertical columns are also strongly correlated with aerosol composition or type. In particular, we find AAE values near 1 (the theoretical value for black carbon) for AERONET-measured aerosol columns dominated by urban-industrial aerosol, larger AAE values for biomass burning aerosols, and the largest AAE values for Sahara dust aerosols. These AERONET results are consistent with results from other, very different, techniques, including solar flux-aerosol optical depth (AOD) analyses and airborne in situ analyses examined in this paper, as well as many other previous results. Ambiguities in aerosol composition or mixtures thereof, resulting from intermediate AAE values, can be reduced via cluster analyses that supplement AAE with other variables, for example Extinction Angstrom Exponent (EAE), which is an indicator of particle size. Together with previous results, these results strengthen prospects for determining aerosol composition from space, for example using the Glory Aerosol Polarimetry Sensor (APS), which seeks to provide retrievals of multiwavelength single-scattering albedo (SSA) and aerosol optical depth (and therefore aerosol absorption optical depth (AAOD) and AAE), as well as shape and other aerosol properties. Multidimensional cluster analyses promise additional information content, for example by using the Ozone Monitoring Instrument (OMI) to add AAOD in the near ultraviolet and CALIPSO aerosol layer heights to reduce height-absorption ambiguity.
17. Achievements in mental health outcome measurement in Australia: Reflections on progress made by the Australian Mental Health Outcomes and Classification Network (AMHOCN)
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Burgess Philip, Coombs Tim, Clarke Adam, Dickson Rosemary, and Pirkis Jane
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract Background Australia’s National Mental Health Strategy has emphasised the quality, effectiveness and efficiency of services, and has promoted the collection of outcomes and casemix data as a means of monitoring these. All public sector mental health services across Australia now routinely report outcomes and casemix data. Since late-2003, the Australian Mental Health Outcomes and Classification Network (AMHOCN) has received, processed, analysed and reported on outcome data at a national level, and played a training and service development role. This paper documents the history of AMHOCN’s activities and achievements, with a view to providing lessons for others embarking on similar exercises. Method We conducted a desktop review of relevant documents to summarise the history of AMHOCN. Results AMHOCN has operated within a framework that has provided an overarching structure to guide its activities but has been flexible enough to allow it to respond to changing priorities. With no precedents to draw upon, it has undertaken activities in an iterative fashion with an element of ‘trial and error’. It has taken a multi-pronged approach to ensuring that data are of high quality: developing innovative technical solutions; fostering ‘information literacy’; maximising the clinical utility of data at a local level; and producing reports that are meaningful to a range of audiences. Conclusion AMHOCN’s efforts have contributed to routine outcome measurement gaining a firm foothold in Australia’s public sector mental health services.
- Published
- 2012
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18. Stable individual differences in strategies within, but not between, visual search tasks.
- Author
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Clarke AD, Irons JL, James W, Leber AB, and Hunt AR
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- Humans, Reproducibility of Results, Visual Perception, Eye Movements, Individuality
- Abstract
A striking range of individual differences has recently been reported in three different visual search tasks. These differences in performance can be attributed to strategy, that is, the efficiency with which participants control their search to complete the task quickly and accurately. Here, we ask whether an individual's strategy and performance in one search task is correlated with how they perform in the other two. We tested 64 observers and found that even though the test-retest reliability of the tasks was high, an observer's performance and strategy in one task was not predictive of their behaviour in the other two. These results suggest search strategies are stable over time, but context-specific. To understand visual search, we therefore need to account not only for differences between individuals but also how individuals interact with the search task and context.
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- 2022
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19. People are unable to recognize or report on their own eye movements.
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Clarke AD, Mahon A, Irvine A, and Hunt AR
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- Adult, Female, Humans, Male, Middle Aged, Photic Stimulation, Reaction Time physiology, Young Adult, Attention physiology, Awareness physiology, Eye Movements physiology, Visual Perception physiology
- Abstract
Eye movements bring new information into our visual system. The selection of each fixation is the result of a complex interplay of image features, task goals, and biases in motor control and perception. To what extent are we aware of the selection of saccades and their consequences? Here we use a converging methods approach to answer this question in three diverse experiments. In Experiment 1, participants were directed to find a target in a scene by a verbal description of it. We then presented the path the eyes took together with those of another participant. Participants could only identify their own path when the comparison scanpath was searching for a different target. In Experiment 2, participants viewed a scene for three seconds and then named objects from the scene. When asked whether they had looked directly at a given object, participants' responses were primarily determined by whether or not the object had been named, and not by whether it had been fixated. In Experiment 3, participants executed saccades towards single targets and then viewed a replay of either the eye movement they had just executed or that of someone else. Participants were at chance to identify their own saccade, even when it contained under- and overshoot corrections. The consistent inability to report on one's own eye movements across experiments suggests that awareness of eye movements is extremely impoverished or altogether absent. This is surprising given that information about prior eye movements is clearly used during visual search, motor error correction, and learning.
- Published
- 2017
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20. Human visual search behaviour is far from ideal.
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Nowakowska A, Clarke AD, and Hunt AR
- Subjects
- Biological Evolution, Fixation, Ocular, Humans, Photic Stimulation, Eye Movements, Vision, Ocular
- Abstract
Evolutionary pressures have made foraging behaviours highly efficient in many species. Eye movements during search present a useful instance of foraging behaviour in humans. We tested the efficiency of eye movements during search using homogeneous and heterogeneous arrays of line segments. The search target is visible in the periphery on the homogeneous array, but requires central vision to be detected on the heterogeneous array. For a compound search array that is heterogeneous on one side and homogeneous on the other, eye movements should be directed only to the heterogeneous side. Instead, participants made many fixations on the homogeneous side. By comparing search of compound arrays to an estimate of search performance based on uniform arrays, we isolate two contributions to search inefficiency. First, participants make superfluous fixations, sacrificing speed for a perceived (but not actual) gain in response certainty. Second, participants fixate the homogeneous side even more frequently than predicted by inefficient search of uniform arrays, suggesting they also fail to direct fixations to locations that yield the most new information., (© 2017 The Author(s).)
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- 2017
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21. Inefficient search strategies in simulated hemianopia.
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Nowakowska A, Clarke AD, Sahraie A, and Hunt AR
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- Adult, Female, Humans, Male, Young Adult, Eye Movements physiology, Hemianopsia physiopathology, Pattern Recognition, Visual physiology, Visual Fields physiology
- Abstract
We investigated whether healthy participants can spontaneously adopt effective eye movement strategies to compensate for information loss similar to that experienced by patients with damage to visual cortex (hemianopia). Visual information in 1 hemifield was removed or degraded while participants searched for an emotional face among neutral faces or a line tilted 45° to the right among lines of varying degree of tilt. A bias to direct saccades toward the sighted field was observed across all 4 experiments. The proportion of saccades directed toward the "blind" field increased with the amount of information available in that field, suggesting fixations are driven toward salient visual stimuli rather than toward locations that maximize information gain. In Experiments 1 and 2, the sighted-field bias had a minimal impact on search efficiency, because the target was difficult to find. However, the sighted-field bias persisted even when the target was visually distinct from the distractors and could easily be detected in the periphery (Experiments 3 and 4). This surprisingly inefficient search behavior suggests that eye movements are biased to salient visual stimuli even when it comes at a clear cost to search efficiency, and efficient strategies to compensate for visual deficits are not spontaneously adopted by healthy participants. (PsycINFO Database Record, ((c) 2016 APA, all rights reserved).)
- Published
- 2016
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22. The effect of visualization on visual search performance : Does visualization trump vision?
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F Clarke AD, Barr C, and Hunt AR
- Subjects
- Adult, Humans, Young Adult, Attention physiology, Imagination physiology, Psychomotor Performance physiology, Visual Perception physiology
- Abstract
Striking results recently demonstrated that visualizing search for a target can facilitate visual search for that target on subsequent trials (Reinhart et al. 2015). This visualization benefit was even greater than the benefit of actually repeating search for the target. We registered a close replication and generalization of the original experiment. Our results show clear benefits of repeatedly searching for the same target, but we found no benefit associated with visualization. The difficulty of the search task and the ability to monitor compliance with instructions to visualize are both possible explanations for the failure to replicate, and both should be carefully considered in future research exploring this interesting phenomenon.
- Published
- 2016
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23. Human search for a target on a textured background is consistent with a stochastic model.
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Clarke AD, Green P, Chantler MJ, and Hunt AR
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- Adult, Female, Humans, Male, Photic Stimulation, Young Adult, Cues, Fixation, Ocular physiology, Saccades physiology, Visual Perception physiology
- Abstract
Previous work has demonstrated that search for a target in noise is consistent with the predictions of the optimal search strategy, both in the spatial distribution of fixation locations and in the number of fixations observers require to find the target. In this study we describe a challenging visual-search task and compare the number of fixations required by human observers to find the target to predictions made by a stochastic search model. This model relies on a target-visibility map based on human performance in a separate detection task. If the model does not detect the target, then it selects the next saccade by randomly sampling from the distribution of saccades that human observers made. We find that a memoryless stochastic model matches human performance in this task. Furthermore, we find that the similarity in the distribution of fixation locations between human observers and the ideal observer does not replicate: Rather than making the signature doughnut-shaped distribution predicted by the ideal search strategy, the fixations made by observers are best described by a central bias. We conclude that, when searching for a target in noise, humans use an essentially random strategy, which achieves near optimal behavior due to biases in the distributions of saccades we have a tendency to make. The findings reconcile the existence of highly efficient human search performance with recent studies demonstrating clear failures of optimality in single and multiple saccade tasks.
- Published
- 2016
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24. Failure of Intuition When Choosing Whether to Invest in a Single Goal or Split Resources Between Two Goals.
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Clarke AD and Hunt AR
- Subjects
- Decision Making, Humans, Task Performance and Analysis, Choice Behavior, Intuition
- Abstract
In a series of related experiments, we asked people to choose whether to split their attention between two equally likely potential tasks or to prioritize one task at the expense of the other. In such a choice, when the tasks are easy, the best strategy is to prepare for both of them. As difficulty increases beyond the point at which people can perform both tasks accurately, they should switch strategy and focus on one task at the expense of the other. Across three very different tasks (target detection, throwing, and memory), none of the participants switched their strategy at the correct point. Moreover, the majority consistently failed to modify their strategy in response to changes in task difficulty. This failure may have been related to uncertainty about their own ability, because in a version of the experiment in which there was no uncertainty, participants uniformly switched at an optimal point., (© The Author(s) 2015.)
- Published
- 2016
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25. Giving Good Directions: Order of Mention Reflects Visual Salience.
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Clarke AD, Elsner M, and Rohde H
- Abstract
In complex stimuli, there are many different possible ways to refer to a specified target. Previous studies have shown that when people are faced with such a task, the content of their referring expression reflects visual properties such as size, salience, and clutter. Here, we extend these findings and present evidence that (i) the influence of visual perception on sentence construction goes beyond content selection and in part determines the order in which different objects are mentioned and (ii) order of mention influences comprehension. Study 1 (a corpus study of reference productions) shows that when a speaker uses a relational description to mention a salient object, that object is treated as being in the common ground and is more likely to be mentioned first. Study 2 (a visual search study) asks participants to listen to referring expressions and find the specified target; in keeping with the above result, we find that search for easy-to-find targets is faster when the target is mentioned first, while search for harder-to-find targets is facilitated by mentioning the target later, after a landmark in a relational description. Our findings show that seemingly low-level and disparate mental "modules" like perception and sentence planning interact at a high level and in task-dependent ways.
- Published
- 2015
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26. VEP Responses to Op-Art Stimuli.
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O'Hare L, Clarke AD, and Pollux PM
- Subjects
- Eye Movements, Humans, Contrast Sensitivity, Evoked Potentials, Visual, Pattern Recognition, Visual
- Abstract
Several types of striped patterns have been reported to cause adverse sensations described as visual discomfort. Previous research using op-art-based stimuli has demonstrated that spurious eye movement signals can cause the experience of illusory motion, or shimmering effects, which might be perceived as uncomfortable. Whilst the shimmering effects are one cause of discomfort, another possible contributor to discomfort is excessive neural responses: As striped patterns do not have the statistical redundancy typical of natural images, they are perhaps unable to be encoded efficiently. If this is the case, then this should be seen in the amplitude of the EEG response. This study found that stimuli that were judged to be most comfortable were also those with the lowest EEG amplitude. This provides some support for the idea that excessive neural responses might also contribute to discomfort judgements in normal populations, in stimuli controlled for perceived contrast.
- Published
- 2015
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27. Freshwater movement patterns by juvenile Pacific salmon Oncorhynchus spp. before they migrate to the ocean: Oh the places you'll go!
- Author
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Shrimpton JM, Warren KD, Todd NL, McRae CJ, Glova GJ, Telmer KH, and Clarke AD
- Subjects
- Animals, British Columbia, Mass Spectrometry, Animal Migration, Oncorhynchus physiology, Otolithic Membrane chemistry, Rivers chemistry
- Abstract
Juvenile movement patterns for coho salmon Oncorhynchus kisutch and Chinook salmon Oncorhynchus tshawytscha from two large interior rivers of British Columbia, Canada, were examined. Otoliths from post-spawned fishes were collected on spawning grounds and elemental signatures were determined through transects from sectioned otoliths using laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS). Large variations in otolith elemental signatures were found during the freshwater life stage indicative of movement downstream to rivers and tributaries that differed in elemental signature. This study highlights that downstream movements occur before migration to the ocean during the parr-smolt transformation. Extensive downstream movements of parr appear to be a successful life-history strategy based on variations observed in the otolith elemental signatures of spawners. Movements downstream in parr and the remarkable homing ability of adults also suggest that imprinting to natal streams must occur prior to the parr-smolt transformation., (© 2014 The Fisheries Society of the British Isles.)
- Published
- 2014
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28. Deriving an appropriate baseline for describing fixation behaviour.
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Clarke AD and Tatler BW
- Subjects
- Attention physiology, Eye Movements physiology, Humans, Models, Theoretical, Fixation, Ocular physiology, Visual Perception physiology
- Abstract
Humans display image-independent viewing biases when inspecting complex scenes. One of the strongest such bias is the central tendency in scene viewing: observers favour making fixations towards the centre of an image, irrespective of its content. Characterising these biases accurately is important for three reasons: (1) they provide a necessary baseline for quantifying the association between visual features in scenes and fixation selection; (2) they provide a benchmark for evaluating models of fixation behaviour when viewing scenes; and (3) they can be included as a component of generative models of eye guidance. In the present study we compare four commonly used approaches to describing image-independent biases and report their ability to describe observed data and correctly classify fixations across 10 eye movement datasets. We propose an anisotropic Gaussian function that can serve as an effective and appropriate baseline for describing image-independent biases without the need to fit functions to individual datasets or subjects., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
29. Oxytocin-augmented social cognitive skills training in schizophrenia.
- Author
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Davis MC, Green MF, Lee J, Horan WP, Senturk D, Clarke AD, and Marder SR
- Subjects
- Administration, Intranasal, Adult, Central Nervous System Agents adverse effects, Cognition, Combined Modality Therapy, Double-Blind Method, Empathy, Facial Expression, Follow-Up Studies, Humans, Male, Neuropsychological Tests, Outpatients, Oxytocin adverse effects, Pattern Recognition, Visual, Schizophrenic Psychology, Time Factors, Treatment Outcome, Central Nervous System Agents administration & dosage, Cognitive Behavioral Therapy methods, Oxytocin administration & dosage, Schizophrenia therapy, Social Perception
- Abstract
Impairments in social cognition are common in schizophrenia and predict poor functional outcome. The purpose of this proof-of-concept randomized, parallel group clinical trial was to assess whether intranasal oxytocin (OT), given before social cognitive training, enhances learning of social cognitive skills. Twenty seven male outpatients with schizophrenia participated in a 6-week (12 session) training on social cognitive skills. Training focused on three domains: facial affect recognition, social perception, and empathy. Subjects were randomly assigned (double blind) to receive either intranasal OTor placebo 30 min before each session. Participants did not receive OT between sessions or on the day of assessments. We evaluated scores on social-cognition measures, as well as clinical symptoms and neurocognition, at baseline, 1 week following the final training session, and 1 month later. Our prespecified primary outcome measure was a social-cognition composite score comprised of five individual measures. There were main effects of time (indicating improvement across the combined-treatment groups) on the social-cognition composite score at both 1 week and 1 month following completion of training. Subjects receiving OT demonstrated significantly greater improvements in empathic accuracy than those receiving placebo at both posttreatment and 1 month follow up. There were no OT-related effects for the other social cognitive tests, clinical symptoms, or neurocognition. This study provides initial support for the idea that OT enhances the effectiveness of training when administered shortly before social cognitive training sessions. The effects were most pronounced on empathic accuracy, a high-level social cognitive process that is not easily improved in current social cognitive remediation programs.
- Published
- 2014
- Full Text
- View/download PDF
30. The impact of attentional, linguistic, and visual features during object naming.
- Author
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Clarke AD, Coco MI, and Keller F
- Abstract
Object detection and identification are fundamental to human vision, and there is mounting evidence that objects guide the allocation of visual attention. However, the role of objects in tasks involving multiple modalities is less clear. To address this question, we investigate object naming, a task in which participants have to verbally identify objects they see in photorealistic scenes. We report an eye-tracking study that investigates which features (attentional, visual, and linguistic) influence object naming. We find that the amount of visual attention directed toward an object, its position and saliency, along with linguistic factors such as word frequency, animacy, and semantic proximity, significantly influence whether the object will be named or not. We then ask how features from different modalities are combined during naming, and find significant interactions between saliency and position, saliency and linguistic features, and attention and position. We conclude that when the cognitive system performs tasks such as object naming, it uses input from one modality to constraint or enhance the processing of other modalities, rather than processing each input modality independently.
- Published
- 2013
- Full Text
- View/download PDF
31. Effects of single dose intranasal oxytocin on social cognition in schizophrenia.
- Author
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Davis MC, Lee J, Horan WP, Clarke AD, McGee MR, Green MF, and Marder SR
- Subjects
- Administration, Intranasal, Adolescent, Adult, Aged, Double-Blind Method, Empathy drug effects, Humans, Male, Middle Aged, Neuropsychological Tests, Psychiatric Status Rating Scales, Social Perception, Theory of Mind, Young Adult, Cognition drug effects, Oxytocin administration & dosage, Schizophrenia drug therapy, Schizophrenic Psychology, Social Behavior
- Abstract
Deficits in social cognition are common in schizophrenia and predict poor community functioning. Given the current limitations of psychosocial treatments and the lack of pharmacological treatments for social cognitive deficits, the development of novel therapeutic agents could greatly enhance functional recovery in schizophrenia. This study evaluated whether a single dose of intranasal oxytocin acutely improves social cognitive functioning in schizophrenia. Twenty-three male veterans with schizophrenia completed baseline assessments of social cognition that were divided into lower-level (facial affect perception, social perception, detection of lies) and higher-level (detection of sarcasm and deception, empathy) processes. One week later, patients received the same battery after being randomized to a single dose of 40 IU intranasal oxytocin or placebo. Though the groups did not differ significantly on the social cognition composite score, oxytocin improved performance for the higher-level social cognitive tasks (Cohen's d=1.0, p=0.045). Subjects were unable to accurately guess which treatment they had received. The improvements found in higher-level social cognition encourage further studies into the therapeutic potential of oxytocin in schizophrenia., (Published by Elsevier B.V.)
- Published
- 2013
- Full Text
- View/download PDF
32. Where's Wally: the influence of visual salience on referring expression generation.
- Author
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Clarke AD, Elsner M, and Rohde H
- Abstract
REFERRING EXPRESSION GENERATION (REG) PRESENTS THE CONVERSE PROBLEM TO VISUAL SEARCH: given a scene and a specified target, how does one generate a description which would allow somebody else to quickly and accurately locate the target?Previous work in psycholinguistics and natural language processing has failed to find an important and integrated role for vision in this task. That previous work, which relies largely on simple scenes, tends to treat vision as a pre-process for extracting feature categories that are relevant to disambiguation. However, the visual search literature suggests that some descriptions are better than others at enabling listeners to search efficiently within complex stimuli. This paper presents a study testing whether participants are sensitive to visual features that allow them to compose such "good" descriptions. Our results show that visual properties (salience, clutter, area, and distance) influence REG for targets embedded in images from the Where's Wally? books. Referring expressions for large targets are shorter than those for smaller targets, and expressions about targets in highly cluttered scenes use more words. We also find that participants are more likely to mention non-target landmarks that are large, salient, and in close proximity to the target. These findings identify a key role for visual salience in language production decisions and highlight the importance of scene complexity for REG.
- Published
- 2013
- Full Text
- View/download PDF
33. Visual search and visual discomfort.
- Author
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O'Hare L, Clarke AD, and Hibbard PB
- Subjects
- Adult, Contrast Sensitivity physiology, Eye Movement Measurements, Female, Humans, Male, Photic Stimulation, Reaction Time, Sensory Thresholds physiology, Task Performance and Analysis, Young Adult, Fixation, Ocular physiology, Visual Perception physiology
- Abstract
Certain visual stimuli evoke perceptions of discomfort in non-clinical populations. We investigated the impact of stimuli previously judged as uncomfortable by non-clinical populations on a visual search task. One stimulus that has been shown to affect discomfort judgments is noise that has been filtered to have particular statistical properties (Juricevic et al, 2010 Perception 39 884-899). A second type of stimulus associated with visual discomfort is striped patterns (Wilkins et al, 1984 Brain 107 989-1017). These stimuli were used as backgrounds in a visual search task, to determine their influence on search performance. Results showed that, while striped backgrounds did have an impact on visual search performance, this depended on the similarity between the target and background in orientation and spatial frequency. We found no evidence for a more generalised effect of discomfort on performance.
- Published
- 2013
- Full Text
- View/download PDF
34. The effects of display time and eccentricity on the detection of amplitude and phase degradations in textured stimuli.
- Author
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Clarke AD, Green PR, and Chantler MJ
- Subjects
- Adult, Artifacts, Contrast Sensitivity physiology, Humans, Sensory Thresholds physiology, Surface Properties, Time Factors, Young Adult, Fovea Centralis physiology, Pattern Recognition, Visual physiology, Photic Stimulation methods, Vision, Ocular physiology, Visual Fields physiology
- Abstract
The amplitude and phase spectra of an image contain important information for perception, and a large body of work has investigated the effects of manipulating these spectra on the recognition or classification of image content. Here, we use a novel means of investigating sensitivity to amplitude and phase spectra properties, testing the ability of observers to detect degradations of the spectral content of synthetic images of textured surfaces that are broadband in the frequency domain. The effects of display time and retinal eccentricity on sensitivity to these two manipulations are compared using stimuli matched for difficulty of detection. We find no difference between the time courses for the detection of degradation in the two spectra; in both cases, accuracy rises above chance when display times are greater than 80 ms. Increasing retinal eccentricity to 8.7°, however, has a significantly stronger effect on the accuracy of detecting degradations of the amplitude spectrum than of the phase spectrum. Further, sensitivity to phase randomization that is restricted to low spatial frequencies is greater in the periphery (at 8.7° eccentricity) than in the fovea. These last two results imply that the fovea and periphery are specialized for the processing of phase spectrum information in distinct spatial frequency bands.
- Published
- 2012
- Full Text
- View/download PDF
35. Light absorption from particulate impurities in snow and ice determined by spectrophotometric analysis of filters.
- Author
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Grenfell TC, Doherty SJ, Clarke AD, and Warren SG
- Abstract
Light absorption by particulate impurities in snow and ice can affect the surface albedo and is important for the climate. The absorption properties of these particles can be determined by collecting and melting snow samples and extracting the particulate material by filtration of the meltwater. This paper describes the optical design and testing of a new instrument to measure the absorption spectrum from 400 to 750 nm wavelength of the particles collected on filters using an "integrating-sandwich" configuration. The measured absorption is shown to be unaffected by scattering of light from the deposited particulates. A set of calibration standards is used to derive an upper limit for the concentration of black carbon (BC) in the snow. The wavelength dependence of the absorption spectra from 450 to 600 nm is used to calculate an absorption Ångstrom exponent for the aerosol. This exponent is used to estimate the actual BC concentration in the snow samples as well as the relative contributions of BC and non-BC constituents to the absorption of solar radiation integrated over the wavelength band 300 to 750 nm.
- Published
- 2011
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- View/download PDF
36. An improved technique for Soave trans-anal pull-through.
- Author
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Broadhurst JF, Lamparelli MJ, Clarke AD, and Lewis MC
- Subjects
- Chronic Disease, Humans, Male, Anal Canal surgery, Digestive System Surgical Procedures methods, Rectal Fistula surgery
- Abstract
Aim: To describe a new technique for the Soave trans-anal pull-through., Method: After the mucosectomy during a Soave's procedure, a laparoscopic wound retractor was used to line the distal rectal segment to facilitate delivery of the proximal bowel through a narrow scarred pelvis., Results: The technique greatly assisted delivery of the proximal bowel and helped prevent mesenteric injury., Conclusion: Soave trans-anal pull-through is a difficult operation that is largely confined to specialist centres. We describe an improvement to the technique that greatly facilitates the procedure., (© 2011 The Authors. Colorectal Disease © 2011 The Association of Coloproctology of Great Britain and Ireland.)
- Published
- 2011
- Full Text
- View/download PDF
37. Comparative in vitro metabolism of the 'designer' steroid estra-4,9-diene-3,17-dione between the equine, canine and human: identification of target metabolites for use in sports doping control.
- Author
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Scarth JP, Clarke AD, Teale P, and Pearce CM
- Subjects
- Animals, Chromatography, Liquid, Dogs, Gas Chromatography-Mass Spectrometry, Horses, Humans, Magnetic Resonance Spectroscopy, Molecular Structure, Tandem Mass Spectrometry, Doping in Sports prevention & control, Estrenes chemistry, Estrenes metabolism, Substance Abuse Detection methods
- Abstract
Effective detection of the abuse of androgenic-anabolic steroids in human and animal sports often requires knowledge of the drug's metabolism in order to target appropriate urinary metabolites. 'Designer' steroids are problematic since it is difficult to obtain ethical approval for in vivo metabolism studies due to a lack of a toxicological profile. In this study, the in vitro metabolism of estra-4,9-diene-3,17-dione is reported for the first time. This is also the first study comparing the metabolism of a designer steroid in the three major species subject to sport's doping control; namely the equine, canine and human. In order to allow the retrospective analysis of sample testing data, the use of a high-resolution (HR) accurate-mass Thermo LTQ-Orbitrap LC-MS instrument was employed for metabolite identification of underivatised sample extracts. The full scan HR-LC-MS Orbitrap data was complimented by several further experiments targeted at elucidating more detailed structural information for the most abundant metabolites. These included; HR-LC-MS/MS of the underivatised metabolites, functional group selective chemical derivatisation followed by full scan HR-LC-MS, enzyme inhibition experiments and full scan electron ionization GC-MS analysis of methoxyamine-trimethylsilyl derivatives. The major metabolite detected in all species, and therefore the most suitable candidate for screening of estra-4,9-diene-3,17-dione abuse, was proposed to be an isomer of 17-hydroxy-estra-4,9-dien-3-one. Less significant metabolic pathways in all species included hydroxylation and reduction followed by hydroxylation. Reductive metabolism in the canine was less significant than in the other two species, while the equine was unique in producing a di-reduced metabolite (proposed to be an isomer of estra-4,9-diene-3,17-diol) and also relatively large quantities of d-ring hydroxy and hydroxy-reduced metabolites.
- Published
- 2010
- Full Text
- View/download PDF
38. Measuring perceived differences in surface texture due to changes in higher order statistics.
- Author
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Emrith K, Chantler MJ, Green PR, Maloney LT, and Clarke AD
- Subjects
- Analysis of Variance, Humans, Models, Biological, Probability, Spectrum Analysis, Surface Properties, Visual Perception
- Abstract
We investigate the ability of humans to perceive changes in the appearance of images of surface texture caused by the variation of their higher order statistics. We incrementally randomize their phase spectra while holding their first and second order statistics constant in order to ensure that the change in the appearance is due solely to changes in third and other higher order statistics. Stimuli comprise both natural and synthetically generated naturalistic images, with the latter being used to prevent observers from making pixel-wise comparisons. A difference scaling method is used to derive the perceptual scales for each observer, which show a sigmoidal relationship with the degree of randomization. Observers were maximally sensitive to changes within the 20%-60% randomization range. In order to account for this behavior we propose a biologically plausible model that computes the variance of local measurements of phase congruency.
- Published
- 2010
- Full Text
- View/download PDF
39. Source attribution of black carbon in Arctic snow.
- Author
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Hegg DA, Warren SG, Grenfell TC, Doherty SJ, Larson TV, and Clarke AD
- Subjects
- Air Pollution analysis, Arctic Regions, Greenland, North America, Russia, Air Pollutants, Carbon chemistry, Environmental Monitoring, Snow chemistry
- Abstract
Snow samples obtained at 36 sites in Alaska, Canada, Greenland, Russia, and the Arctic Ocean in early 2007 were analyzed for light-absorbing aerosol concentration together with a suite of associated chemical species. The light absorption data, interpreted as black carbon concentrations, and other chemical data were input into the EPA PMF 1.1 receptor model to explore the sources for black carbon in the snow. The analysis found four factors or sources: two distinct biomass burning sources, a pollution source, and a marine source. The first three of these were responsible for essentially all of the black carbon, with the two biomass sources (encompassing both open and closed combustion) together accounting for >90% of the black carbon.
- Published
- 2009
- Full Text
- View/download PDF
40. Modeling visual search on a rough surface.
- Author
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Clarke AD, Chantler MJ, and Green PR
- Subjects
- Humans, Linear Models, Nonlinear Dynamics, Fixation, Ocular physiology, Models, Neurological, Pattern Recognition, Visual physiology, Photic Stimulation methods, Visual Perception physiology
- Abstract
The LNL (linear, non-linear, linear) model has previously been successfully applied to the problem of texture segmentation. In this study we investigate the extent to which a simple LNL model can simulate human performance in a search task involving a target on a textured surface. Two different classes of surface are considered: 1/f(beta)-noise and near-regular textures. We find that in both cases the search performance of the model does not differ significantly from that of people, over a wide range of task difficulties.
- Published
- 2009
- Full Text
- View/download PDF
41. Inflated 'non-leak' mortality compared to 1995 Wessex CRC Audit.
- Author
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Underwood T, Brent A, Clarke AD, Talbot RW, and Nash GF
- Subjects
- Autopsy, Colectomy adverse effects, Colectomy methods, Colorectal Neoplasms surgery, Female, Humans, Incidence, Intestinal Fistula etiology, Intestinal Fistula mortality, Male, Postoperative Complications mortality, Risk Assessment, Survival Analysis, United Kingdom, Anastomosis, Surgical adverse effects, Cause of Death, Colorectal Neoplasms mortality, Medical Audit
- Published
- 2008
- Full Text
- View/download PDF
42. A diagnostic dilemma following risk-reducing surgery for BRCA1 mutation - a case report of primary papillary serous carcinoma presenting as sigmoid cancer.
- Author
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Chand M, Moore PJ, Clarke AD, Nash GF, and Hickisk T
- Subjects
- Adenocarcinoma surgery, Adult, Breast Neoplasms pathology, Breast Neoplasms surgery, Colectomy methods, Cystadenocarcinoma, Serous surgery, Diagnosis, Differential, Female, Follow-Up Studies, Genetic Predisposition to Disease, Humans, Mastectomy methods, Mutation, Ovarian Neoplasms pathology, Ovarian Neoplasms prevention & control, Ovarian Neoplasms surgery, Ovariectomy, Peritoneal Neoplasms secondary, Peritoneal Neoplasms surgery, Primary Prevention methods, Risk Assessment, Sigmoid Neoplasms surgery, Time Factors, Treatment Outcome, Adenocarcinoma genetics, Adenocarcinoma secondary, Breast Neoplasms genetics, Cystadenocarcinoma, Serous pathology, Genes, BRCA1, Neoplasms, Second Primary pathology, Peritoneal Neoplasms pathology, Sigmoid Neoplasms secondary
- Abstract
Background: Women that carry germ-line mutations for BRCA1 or BRCA2 genes are at an increased risk of developing breast, ovarian and peritoneal cancer. Primary peritoneal carcinoma is a rare tumour histologically identical to papillary serous ovarian carcinoma. Risk-reducing surgery in the form of mastectomy and oophorectomy in premenopausal women has been recommended to prevent breast and ovarian cancer occurrence and decrease the risk of developing primary peritoneal cancer., Case Presentation: We present a case report of a woman with a strong family history of breast cancer who underwent risk-reducing surgery in the form of bilateral salpingo-oophorectomy following a mastectomy for a right-sided breast tumour. Following the finding of a BRCA1 mutation, a prophylactic left-sided mastectomy was performed. After remaining well for twenty-seven years, she presented with rectal bleeding and altered bowel habit, and was found to have a secondary cancer of the sigmoid colon. She was finally diagnosed with primary papillary serous carcinoma of the peritoneum (PSCP)., Conclusion: PSCP can present many years after risk-reducing surgery and be difficult to detect. Surveillance remains the best course of management for patients with known BRCA mutations.
- Published
- 2007
- Full Text
- View/download PDF
43. Hollow seton for magnetic resonance imaging fistula visualization.
- Author
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Armstrong T, Tarver DS, Clarke AD, Talbot RW, and Nash GF
- Subjects
- Digestive System Surgical Procedures methods, Rectal Fistula pathology, Ultrasonography, Magnetic Resonance Imaging, Rectal Fistula diagnostic imaging
- Published
- 2006
- Full Text
- View/download PDF
44. Hydrophobicity of bitter peptides from soy protein hydrolysates.
- Author
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Cho MJ, Unklesbay N, Hsieh FH, and Clarke AD
- Subjects
- Amino Acids analysis, Chemical Fractionation, Hydrolysis, Hydrophobic and Hydrophilic Interactions, Molecular Weight, Ultrafiltration, Peptide Fragments chemistry, Soybean Proteins chemistry, Taste
- Abstract
Soy peptides were characterized for flavor, chemical properties, and hydrophobicity to investigate their relationships with bitterness. Five peptide fractions ranging in average molecular mass from 580 to 11300 Da were fractionated by ultrafiltration from two commercial soy protein hydrolysates. The bitterness of fractionated peptides was related to molecular mass, with maximum bitterness observed at approximately 4000 Da for one hydrolysate and 2000 Da for the other. The bitterness increased as the peptide M(w) decreased to 3000 Da for the first hydrolysate and to 2000 Da for the second one and then decreased as the peptide M(w) decreased below 1000 Da. The peptide fraction with molecular mass of <1000 Da showed the lowest bitterness for both. The hydrophobicity data based on Q values do not support Ney's Q rule as a predictor of bitterness for soy peptides.
- Published
- 2004
- Full Text
- View/download PDF
45. Wavelength Dependence of Backscatter by use of Aerosol Microphysics and Lidar Data Sets: Application to 2.1- mum Wavelength for Space-Based and Airborne Lidars.
- Author
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Srivastava V, Rothermel J, Clarke AD, Spinhirne JD, Menzies RT, Cutten DR, Jarzembski MA, Bowdle DA, and McCaul EW
- Abstract
An aerosol microphysics dataset was used to model backscatter in the 0.35-11-mum wavelength range, with the results validated by comparison with measured cw and pulsed lidar backscatter obtained during two NASA-sponsored airborne field experiments. Different atmospheric features were encountered, with aerosol backscatter ranging over 4 orders of magnitude. Modeled conversion functions were used to convert existing lidar backscatter datasets to 2.1 mum. Resulting statistical distribution shows the midtropospheric aerosol backscatter background mode of beta(2.1) to be between ~3.0 x 10(-10) and ~1.3 x 10(-9) m(-1) sr(-1), ~10-20 times higher than that for beta(9.1); and a beta(2.1) boundary layer mode of ~1.0 x 10(-7) to ~1.3 x 10(-6) m(-1) sr(-1), ~3-5 times higher than beta(9.1).
- Published
- 2001
- Full Text
- View/download PDF
46. Survival of Listeria monocytogenes Scott A on vacuum-packaged raw beef treated with polylactic acid, lactic acid, and nisin.
- Author
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Ariyapitipun T, Mustapha A, and Clarke AD
- Subjects
- Animals, Cattle, Hydrogen-Ion Concentration, Listeria monocytogenes drug effects, Molecular Weight, Polyesters, Vacuum, Food Microbiology, Food Packaging methods, Lactic Acid pharmacology, Listeria monocytogenes isolation & purification, Meat microbiology, Nisin pharmacology, Polymers pharmacology
- Abstract
Low-molecular-weight polylactic acid (LMW-PLA) and lactic acid (LA) were used to inhibit growth of Listeria monocytogenes Scott A on vacuum-packaged beef. Nisin was also used simultaneously as an additional hurdle to the growth of this pathogen. Inoculated beef cubes were immersed in a solution of 2% LMW-PLA, 2% LA, 400 IU/ml of nisin, or combinations of each acid and nisin for 5 min and drip-dried for 15 min. The cubes were then vacuum-packaged and stored at 4 degrees C for up to 42 days. Surface pH values of beef cubes treated with 2% LMW-PLA, the combination of 400 IU/ml of nisin and 2% LMW-PLA (2% NPLA), or 400 IU/ml of nisin alone were significantly reduced from 5.59 to 5.18, 5.01, and 5.19, respectively, whereas those decontaminated with 2% LA or 400 IU/ml of nisin and 2% LA (2% NLA) were significantly decreased from 5.59 to 4.92 and 4.83, respectively, at day 0 (P < or = 0.05). The 2% LMW-PLA, 2% LA, 2% NPLA, 2% NLA, and 400 IU/ml of nisin showed immediate bactericidal effects on L. monocytogenes Scott A (1.22-, 1.56-, 1.57-, 1.94-, and 1.64-log10 reduction, respectively) compared with the initial number of 5.33 log10 CFU/cm2 of the untreated control at day 0 (P < or = 0.05). These treatments, combined with vacuum-packaging and refrigeration temperature, succeeded to inhibit growth of L. monocytogenes during storage up to 42 days. At the end of 42 days, the numbers of L. monocytogenes Scott A remaining viable on these samples were 1.21, 0.36, 2.21, 0.84, and 0.89 log10 CFU/cm2, respectively.
- Published
- 2000
- Full Text
- View/download PDF
47. Hernia repair. Clinical indicators.
- Author
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Clarke AD and Howat JM
- Subjects
- England, Gastroenterology standards, Humans, Treatment Outcome, Hernia, Inguinal surgery, Quality of Health Care
- Published
- 1999
48. Microbial shelf life determination of vacuum-packaged fresh beef treated with polylactic acid, lactic acid, and nisin solutions.
- Author
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Ariyapitipun T, Mustapha A, and Clarke AD
- Subjects
- Animals, Bacteria growth & development, Bacteria isolation & purification, Cattle, Colony Count, Microbial, Disinfection methods, Food Packaging methods, Hydrogen-Ion Concentration, Polyesters, Polymers pharmacology, Vacuum, Anti-Bacterial Agents pharmacology, Food Handling methods, Lactic Acid pharmacology, Meat microbiology, Nisin pharmacology
- Abstract
The effectiveness of polylactic acid, lactic acid, nisin, and combinations of the acids and nisin on extending the shelf-life of raw beef was determined. Fresh beef pieces (5 by 5 by 2.5 cm) were dipped in a solution of 2% low molecular weight polylactic acid (LMW-PLA), 2% lactic acid (LA), 200 IU of nisin per ml, or the combinations of nisin in either 2% LMW-PLA or 2% LA. The samples were then drip-dried, vacuum-packaged, and stored at 4 degrees C for up to 56 days. The beef surface pH values and numbers of psychrotrophic aerobic bacteria, psychrotrophic and mesophilic Enterobacteriaceae, Pseudomonas, and Lactobacillus were determined weekly for 56 days. The average surface pH values of the beef samples treated with 2% LMW-PLA or the combination of 200 IU of nisin per ml and 2% LMW-PLA were significantly reduced to 5.19 and 5.17, respectively, at day 0 (P < or = 0.05), while those decontaminated with 2% LA or 200 IU of nisin per ml in 2% LA solution were significantly decreased from 5.62 to 4.98 and 4.96, respectively. The 2% LMW-PLA, 2% LA, or the combinations of each acid and nisin showed immediate inhibitory effects on psychrotrophic aerobic bacteria (1.94, 2.36, 2.59, and 1.76 log reduction, respectively), psychrotrophic Enterobacteriaceae (1.37, 1.86, 1.77, and 1.35 log reduction, respectively), mesophilic Enterobacteriaceae (1.00, 1.00, 0.82, and 0.68 log reduction, respectively), and Pseudomonas (1.77, 1.57, 1.76, and 1.41 log reduction, respectively) on fresh beef (P < or = 0.05). The reduction was evident up to 56 days as seen by the numbers of Enterobacteriaceae and Pseudomonas (P < or = 0.05). Because there was no interaction between treatments and storage times, the data in each period were combined and presented as effect of treatments on overall microbial counts of fresh beef. It was found that 2% LMW-PLA, 2% LA, and the combinations of each acid and nisin significantly lowered the population of the above organisms compared with the untreated control, water, or nisin alone (P < or = 0.05).
- Published
- 1999
- Full Text
- View/download PDF
49. Particle nucleation in the tropical boundary layer and its coupling to marine sulfur sources
- Author
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Clarke AD, Davis D, Kapustin VN, Eisele F, Chen G, Paluch I I, Lenschow D, Bandy AR, Thornton D, Moore K, Mauldin L, Tanner D, Litchy M, Carroll MA, Collins J, and Albercook G
- Abstract
New particle formation in a tropical marine boundary layer setting was characterized during NASA's Pacific Exploratory Mission-Tropics A program. It represents the clearest demonstration to date of aerosol nucleation and growth being linked to the natural marine sulfur cycle. This conclusion was based on real-time observations of dimethylsulfide, sulfur dioxide, sulfuric acid (gas), hydroxide, ozone, temperature, relative humidity, aerosol size and number distribution, and total aerosol surface area. Classic binary nucleation theory predicts no nucleation under the observed marine boundary layer conditions.
- Published
- 1998
- Full Text
- View/download PDF
50. Measurement of diffusive flux of ammonia from water.
- Author
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Genfa Z, Uehara T, Dasgupta PK, Clarke AD, and Winiwarter W
- Abstract
An instrument was developed for the measurement of gaseous ammonia concentration, NH(3(sw,eq)), in equilibrium with surface waters, notably ocean water. The instrument measures the ammonia flux from a flowing water surface under defined conditions and allows the calculation of NH(3(sw,eq)) from the principles of Fickian diffusion. The flux collector resembles a wetted parallel plate denuder previously developed for air sampling. The sample under study runs on one plate of the device; the ammonia released from the sample is collected by a slow flow of a receptor liquid on the other plate. The NH(3) + NH(4)(+) (hereinafter called N(T)) in the effluent receptor liquid is preconcentrated on a silica gel column and subsequently measured by a fluorometric flow injection analysis (FIA) system. With a 6-min cycle (4-min load, 2-min inject), the analytical system can measure down to 0.3 nM N(T) in the receptor liquid. Coupled with the flux collector, it is sufficiently sensitive to measure the ammonia flux from seawater. The instrument design is such that it is little affected by ambient ammonia. In both laboratory (N(T) 0.2-50 μM), and field investigations (N(T) 0.18-1.7 μM) good linearity between the ammonia flux and the N(T) concentration in seawater (spiked, synthetic, natural) was observed, although aged seawater, with depleted N(T) content, behaves in an unusual fashion upon N(T) addition, showing the existence of an "ammonia demand". NH(3(sw,eq)) levels from ocean water measured in the Coconut Island Laboratory, HI, ranged from 6.6 to 33 nmol/m(3) with an average of 17.4 ± 6.9 nmol/m(3), in comparison to 2.8-21 nmol/m(3) (average 10 ± 7 nmol/m(3)) NH(3(sw,eq)) values previously reported for the Central Pacific Ocean (Quinn, P. K.; et al. J. Geophys. Res. 1990, 95, 16405-16416).
- Published
- 1998
- Full Text
- View/download PDF
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