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Context: The dynamic habitat use by dugongs (Dugong dugon) in small coral reef lagoon systems spatially limited by tides is not well understood and has hampered adaptive management. Aims: We investigated how dugongs locally used a high conservation value coral-reef lagoon system during different seasons and tides to support local management. Methods: We conducted local-scale aerial surveys to document the seasonal and tidal changes in the distribution and number of dugongs over seagrass and non-seagrass coral reef habitats in a small lagoon in New Caledonia. The surveys were conducted fortnightly over 18 months in different seasons and at different tides. Temperature loggers and existing local footage of dugong herding behaviour were used to study the habitat use and behaviour of the animals in the area. Key results: More dugongs were sighted in Cap Goulvain during the cool season than during the warm season. As tides restricted access to the intertidal seagrass meadows and during the cool season, more dugongs were sighted outside the lagoon on the fore reef shelf outside the lagoon. Dugongs were resting in large aggregations during their use of this non-seagrass habitat. Conclusions: Our study emphasises the importance of non-seagrass habitats for dugongs in spatially restricted coral reef environments as well as the importance of considering outer lagoon habitats as key dugong management areas. This study also adds evidence of behavioural thermoregulation in dugongs. Implications: The development of dynamic management strategies is essential, especially where different habitats should be protected at different times of the year. The dugong's (Dugong dugon) habitat use in small coral reef lagoon systems, constrained by tides, is poorly understood, hindering adaptive management. Through aerial surveys, we examined seasonal and tidal variations in dugong utilisation in a high conservation value coral reef lagoon. This study reveals significant temporal variations in dugong habitat use, influenced by tides and seasons. It underscores the importance of outer reef habitats devoid of seagrass for the species. Additionally, it contributes evidence of behavioural thermoregulation in dugongs. This article belongs to the Collection Marine Mammals in the Pacific. [ABSTRACT FROM AUTHOR]

Mobile marine species display complex and nonstationary habitat use patterns that require understanding to design effective management measures. In this study, the spatio-temporal habitat use dynamics of the vulnerable dugong (Dugong dugon) were modelled from 16 satellite-tagged individuals in the coral reef lagoonal ecosystems of New Caledonia, South Pacific. Dugong residence time was calculated along the interpolated tracks (9371 hourly positions) to estimate intensity of use in three contrasting ecoregions, previously identified through hierarchical clustering of lagoon topographic characteristics. Across ecoregions, differences were identified in dugong spatial intensity of use of shallow waters, deeper lagoon waters and the fore-reef shelf outside the barrier reef. Maps of dugong intensity of use were predicted from these ecological relationships and validated with spatial density estimates derived from aerial surveys conducted for population assessment. While high correlation was found between the two datasets, our study extended the spatial patterns of dugong distribution obtained from aerial surveys across the diel cycle, especially in shallow waters preferentially used by dugongs at night/dusk during high tide. This study has important implications for dugong conservation and illustrates the potential benefits of satellite tracking and dynamic habitat use modelling to inform spatial management of elusive and mobile marine mammals. [ABSTRACT FROM AUTHOR]

Marine protected areas (MPAs) are a powerful tool for conserving marine biodiversity when designed using ecological information and conservation goals and targets. Dugongs (Dugong dugon) were not an explicit target in the design of the network of MPAs in New Caledonia, despite being one of the region’s World Heritage values. Our study retrospectively assessed the capacity of the New Caledonia MPA network to protect dugongs from anthropogenic threats. We developed a spatially explicit model of dugong distribution and relative density based on information collected from ∼10 years of aerial surveys. We quantified the amount of overlap between areas supporting high densities of dugongs and MPAs. We found that most of the important dugong habitats of New Caledonia had a low coverage of MPAs that provide high levels of restriction on anthropogenic activities. We identified several important dugong habitats along the west and the north-east coast that were not covered by MPAs and should be a priority for future management. The spatial mismatch between MPAs and dugongs was likely caused by weaknesses in the planning process, including the: (1) lack of explicit conservation goals and targets; (2) omission of spatial information on species’ distribution; (3) mismatch of spatial scales; (4) cost considerations; and (5) incorrect application of the IUCN protected area categories. We provide guidance on how these shortcomings can be avoided for marine species of conservation concern in New Caledonia and other regions. [ABSTRACT FROM AUTHOR]

Detecting dolphins, accurately identifying species, and estimating group size during manned aerial surveys can be challenging. We used images obtained during a manned aerial survey over 13 non-consecutive days and covering a total of 3732 km of transects, in a high-wing aircraft flown at 185 km/h and an altitude of 152 m, equipped with three Single Lens Reflex cameras, to supplement estimates of dolphins recorded by observers. We used this opportunity to assess the adequacy of the resulting images for species identification of two morphologically similar dolphin species (i.e., with similar coloration and body size): the Indo-Pacific bottlenose dolphin (Tursiops aduncus) and the Australian humpback dolphin (Sousa sahulensis) and to accurately estimate dolphin group size. We also compared dolphin group estimates and species identification made by observers during the aerial survey, with manual review of the aerial images, where images overlapped with the observers’ field of view from the aircraft. We collected and reviewed 413000 images and found that an image resolution of 1.25 cm per pixel was adequate to distinguish between the two targeted dolphin species. Our findings suggest that aerial images can improve species identification and estimates of group size > 5. The camera setup and photography parameters that we describe here, with the survey altitude and speed that were used, has the potential to be used to identify, and accurately estimate other morphologically similar small-bodied (< 3 m) species in the marine environment. This will be an important consideration for future aerial surveys of low density, threatened species, that form small and sometimes mixed species groups, including humpback and bottlenose dolphins where their distribution overlaps. [ABSTRACT FROM AUTHOR]

New Caledonia is home to one of the largest remaining populations of dugongs (Dugong dugon) and is located at the southeastern limit of the species range. Local knowledge suggests that current levels of removal due to anthropogenic pressures are unsustainable, whereas trends suggest an ongoing decline in the population. Considering this unfavorable conservation context, this study aimed to assess the New Caledonian dugong population's resilience by determining its level of genetic diversity and degree of isolation relative to other populations. Mitochondrial DNA (mtDNA) control region sequences (n  = 55) collected from live and dead dugongs in New Caledonia were compared with a global data set of previously published sequences (n  = 631) representing dugong populations throughout the species range. The New Caledonian dugong population displayed the lowest level of mtDNA diversity documented worldwide (3 haplotypes with 1-bp difference), suggesting a recent origin of the current population through limited colonization events. Population structure analyses indicate a strong genetic differentiation with all the putative populations represented in the global data set, including large neighboring Australian populations. These results show that the dugong population in New Caledonia is particularly isolated, fragile, and vulnerable to anthropogenic threats and diseases with low potential for resilience through incoming gene flow. Our findings call for an instant conservation response and consideration for IUCN population assessment to support the long-term survival of the New Caledonian dugong population. [ABSTRACT FROM AUTHOR]

Context: Strandings are an important source of information for estimating marine mammal biodiversity, particularly in data-sparse ocean basins such as Oceania. Aims: Here, we report on knowledge acquired from 218 stranding events recorded in the waters of New Caledonia (1877–2022). Methods: We investigated spatio-temporal distribution, stable isotope signatures, trace element concentrations, biometry measurements, genetic diversity, and diet, for the four most commonly stranded taxa (dugongs, 35% of events; sperm whales, 19%; Delphinidae, 18%; pygmy and dwarf sperm whales, 14%). Key results: Beginning in 1991, reports of stranding events increased (183 events, 322 individuals, 20 species from seven families: Dugongidae, Physeteridae, Delphinidae, Kogiidae, Ziphiidae, Balaenopteridae, Otariidae), with hotspots identified on the west coast (Bourail, Ouano, Nouméa) and in Prony Bay. Causes of death were not determined in 84% of stranding events, but were identified in the majority of expert-led necropsies (24 of 29 individuals from 10 species). Yet, valuable information regarding the impact of anthropogenic activities was gathered for some species of concern, such as the endangered dugong (28% human-caused). Since 2016, training and outreach have been provided to rangers, veterinarians, and various public safety officers to support their engagement in the scientific monitoring of marine mammal strandings. A website (www.rescue.ird.nc) was developed to facilitate standardised data collection and storage, and to provide public access to stranding records. Conclusion: Although the number of individuals reported here remains modest, this study provides new information on poorly documented species in New Caledonia. Implications: Long-term monitoring of strandings can help design effective conservation measures. RESUME: Contexte: Les échouages constituent une source d'informations importante pour estimer la biodiversité des mammifères marins, en particulier dans les bassins océaniques pour lesquels les données sont rares, comme l'Océanie Objectif: Nous présentons ici les connaissances acquises à partir de 218 échouages enregistrés dans les eaux de Nouvelle-Calédonie (1877–2022). Méthodes: Nous avons étudié la distribution spatio-temporelle, les signatures isotopiques, les éléments traces, les mesures biométriques, la diversité génétique et le régime alimentaire des quatre taxons les plus fréquemment échoués (dugongs, 35% des échouages; cachalots, 19%; Delphinidae, 18% ; cachalots pygmées et nains, 14%). Principaux résultats: À partir de 1991, les signalements d'échouages ont augmenté (183 événements, 322 individus, 20 espèces de sept familles: Dugongidae, Physeteridae, Delphinidae, Kogiidae, Ziphiidae, Balaenopteridae, Otariidae), avec des points chauds identifiés sur la côte ouest de la Grande Terre (Bourail, Ouano, Nouméa) et dans la Baie de Prony. Les causes de décès n'ont pas été déterminées pour 84% des échouages, mais elles ont été identifiées dans la majorité des autopsies réalisées par des vétérinaires (24 des 29 individus de 10 espèces). Des informations précieuses concernant l'impact des activités anthropiques ont été recueillies pour certaines espèces préoccupantes, telles que le dugong, une espèce en voie de disparition (28% des échouages d'origine humaine). Depuis 2016, des formations et des activités de sensibilisation ont été dispensées aux gardes nature, aux vétérinaires et à divers agents publics pour soutenir leur engagement dans la surveillance scientifique des échouages de mammifères marins. Un site Web (www.rescue.ird.nc) a été développé pour faciliter la collecte et le stockage de données standardisées et pour fournir un accès public aux enregistrements d'échouages. Conclusion: Bien que le nombre d'individus signalés échoués ici reste modeste, cette étude apporte de nouvelles informations sur des espèces peu documentées en Nouvelle-Calédonie. Implications: La surveillance à long terme des échouages peut aider à concevoir des mesures de conservation efficaces. Map of strandings in New Caledonia; people gathered around a stranded whale; four commonly stranded species. Conservation of marine mammals in Oceania is limited by a lack of understanding of these relatively rare, yet emblematic species. Here, we report on significant biological and ecological data acquired from several decades of monitoring strandings in New Caledonia. This increased knowledge may help guide management measures locally and regionally. Photograph by Marine Mammal Stranding Center. This article belongs to the Collection Marine Mammals in the Pacific. [ABSTRACT FROM AUTHOR]

The advent of unoccupied aerial vehicles (UAVs) has enhanced our capacity to survey wildlife abundance, yet new protocols are still required for collecting, processing, and analysing image-type observations. This paper presents a methodological approach to produce informative priors on species misidentification probabilities based on independent experiments. We performed focal follows of known dolphin species and distributed our imagery amongst 13 trained observers. Then, we investigated the effects of reviewer-related variables and image attributes on the accuracy of species identification and level of certainty in observations. In addition, we assessed the number of reviewers required to produce reliable identification using an agreement-based framework compared with the majority rule approach. Among-reviewer variation was an important predictor of identification accuracy, regardless of previous experience. Image resolution and sea state exhibited the most pronounced effects on the proportion of correct identifications and the reviewers' mean level of confidence. Agreement-based identification resulted in substantial data losses but retained a broader range of image resolutions and sea states than the majority rule approach and produced considerably higher accuracy. Our findings suggest a strong dependency on reviewer-related variables and image attributes, which, unless considered, may compromise identification accuracy and produce unreliable estimators of abundance. [ABSTRACT FROM AUTHOR]

The probability of an aquatic animal being available for detection is typically <1. Accounting for covariates that reduce the probability of detection is important for obtaining robust estimates of the population abundance and determining its status and trends. The dugong (Dugong dugon) is a bottom-feeding marine mammal and a seagrass community specialist. We hypothesized that the probability of a dugong being available for detection is dependent on water depth and that dugongs spend more time underwater in deep-water seagrass habitats than in shallow-water seagrass habitats. We tested this hypothesis by quantifying the depth use of 28 wild dugongs fitted with GPS satellite transmitters and time-depth recorders (TDRs) at three sites with distinct seagrass depth distributions: 1) open waters supporting extensive seagrass meadows to 40 m deep (Torres Strait, 6 dugongs, 2015); 2) a protected bay (average water depth 6.8 m) with extensive shallow seagrass beds (Moreton Bay, 13 dugongs, 2011 and 2012); and 3) a mixture of lagoon, coral and seagrass habitats to 60 m deep (New Caledonia, 9 dugongs, 2013). The fitted instruments were used to measure the times the dugongs spent in the experimentally determined detection zones under various environmental conditions. The estimated probability of detection was applied to aerial survey data previously collected at each location. In general, dugongs were least available for detection in Torres Strait, and the population estimates increased 6–7 fold using depth-specific availability correction factors compared with earlier estimates that assumed homogeneous detection probability across water depth and location. Detection probabilities were higher in Moreton Bay and New Caledonia than Torres Strait because the water transparency in these two locations was much greater than in Torres Strait and the effect of correcting for depth-specific detection probability much less. The methodology has application to visual survey of coastal megafauna including surveys using Unmanned Aerial Vehicles. [ABSTRACT FROM AUTHOR]