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Introduction: Breeding programs have developed high-yielding Coffea arabica F1-hybrids as an adaptation against adverse conditions associated with climate change. However, theresponse to drought of coffee F1 hybrids has seldom been assessed. Methods: A trial was established with five C. arabica genotypes (2 pure lines: Catimor and Marsellesa and 3 F1 hybrids: Starmaya, Centroamericano and Mundo Maya) planted under the leguminous tree species Leuceana leucocephala. Coffee growth, yield and physiological responses were assessed under a rain-fed (control: CON) and a rainfall reduction treatment (RR) for 2 years. Results: The RR treatment created a long-term rainfall deficit in a region with suboptimal temperature similar to those predicted by climate change scenarios. Moreover, the RR treatment reduced soil water content by 14% over 2 successive years of production and increased hydric stress of the three F1-hybrids (leaf water potentials averaged -0.8 MPa under RR compared with -0.4 MPa under CON). Under RR, coffee yields were reduced from 16 to 75% compared to CON. Mundo Maya F1 hybrid was the sole high-yielding genotype apable of sustaining its yield under RR conditions. Our results suggested that its significant increase in fine root density (CON = 300 and RR = 910 root.m-2) and its maintenance of photosynthetic rate (2.5 – 3.5 mmol CO2 m-2 s-1) at high evaporative demand might explain why this genotype maintained high yield under RR condition. Discussion: This work highlights a possible drought tolerance mechanism in fruit bearing adult coffee trees where the plant fine root number increases to intake more water in order to preserve turgor and sustainphotosynthesis at high ETo and therefore conserves high yield in dry conditions. [ABSTRACT FROM AUTHOR]

The worldwide demand for the development of drought-tolerant coffee plants is increasing due to the impacts global climate changes have caused in large and small coffee plantations throughout the world. Thus, the genetic improvement of the coffee plant has become indispensable for the continuity and rentability of this agricultural culture. For this, the coffee genetic improvement programs require morphological and physiological information concerning the plants in their germplasm banks to serve as subsidies for the development of cultivars. The current study aims to emphasize the importance of characterizing the genetic material of the coffee plants in the germplasm banks. By way of a literature review, it considered the impact of drought on some aspects of coffee plant physiology and morphology, and the need for genetic improvement programs to understand their germplasm to use it as a starting point in the development of cultivars that mitigate the production losses caused by drought. [ABSTRACT FROM AUTHOR]

AbstractThis study assesses special and mineral fertilizers and the splitting of fertilizer application in coffee - a crop with high nutritional requirements for full yield potential. A 4 × 3 factorial scheme was implemented with four fertilizers [mineral, mineral with polymer, organomineral with cellulosic residue (OM-CR), or sugarcane filter cake (OM-FC)] and three application times, or splits (100% at once, 50%+50%, 33.3%+33.3%+33.3%). Coffee plant height, canopy diameter, plagiotropic branch growth, leaf chlorophyll, nutrient contents in the soil and leaves, and harvest yield after fruit maturation were evaluated in two consecutive crop cycles. The results indicated that organomineral fertilizers performed similarly to other fertilizers regarding coffee leaf chlorophyll and plant height. Only one fertilizer application effectively increased canopy diameter in both crop cycles. In the first crop cycle, OM-FC and conventional mineral fertilizers were significantly better for coffee foliar N content. In contrast, in the second crop cycle, mineral-P, OM-CR, and OM-FC achieved satisfactory results with one fertilizer application, whereas conventional mineral fertilizer required three applications for superior results. There are no differences in leaf P content among different sources and frequencies of application. Still, mineral-P and OM-CR had better soil P content than the conventional mineral fertilizer. OM-CR required two applications to reach high levels of leaf K content, while other fertilizers achieved it with one application. Organomineral and protected mineral fertilizers performed similarly in both crop cycles, with two applications resulting in greater coffee yield in the second cycle, regardless of the fertilizer used. [ABSTRACT FROM AUTHOR]

Silicon (Si) application may affect the plant response to nitrogen (N), possibly by changing the uptake, concentration, and partitioning of nutrients in plant tissues; however, this has not yet been proven in Arabica coffee plants. The effects of Si application methods [no Si, soil-applied soluble Si (168 mg Si L−1), and foliar-applied soluble Si (two application of 2 mg Si plant−1)] and N levels (0 and 80 mg N L−1) on biomass production and partitioning and uptake, partitioning, and stoichiometry of nutrients and Si in young Arabica coffee plants grown under greenhouse conditions were evaluated. Nitrogen fertilization increased the biomass production and uptake of all nutrients; however, reduced the concentrations of K, Ca, Mg, S, Mn, and Si in the leaves, Si in the stems, and K, Mg, and S in the roots of coffee plants as a dilution effect. In the presence of N, soil-applied Si increased the concentrations of Zn in the leaves and Ca and Si in the stems, the uptake of K, S, and Si, and the Si:N ratio. Foliar-applied Si increased the concentrations of N, P, K, and Zn in the leaves and Ca and Si in the stems, as well as the total uptake of K and Si and the Si:N ratio in coffee plants, being more evident in the N fertilization presence. This study unraveled that, especially when it was soil-applied, Si altered the nutrient uptake, allocation, and stoichiometric ratios with N, with a consequent increase in biomass production of young coffee plants fertilized with N. [ABSTRACT FROM AUTHOR]

Background: The nexus plant-microbe-environment is essential to understand the ecosystem processes shaping plant health and fitness. Within this triangle, soils and associated microflora are among the key ecosystem's drivers, underpinning plant productivity and evolution. In this study, we conducted a comprehensive analysis (physicochemical properties, enzyme activities, and taxonomic diversity) of soils under the canopy projection of Coffea arabica trees along a gradient of elevation (600, 800, and 900 m) and shade (0, 50, 100%). Results: While shade had no influence on most parameters, altitude shaped the dynamics of microbial communities. Available phosphorus, soil organic carbon, and nitrate were significantly higher at 800 m, likely due to the higher activities of β-glucosidase and phosphatases at this altitude. Microbial biomass (carbon and nitrogen) and moisture were significantly higher at 600 and 900 m, which might be attributed to the abundance and richness of soil microorganisms. Indeed, metabarcoding analysis revealed a complex pattern of microbial consortia (bacteria, archaea, fungi) at the three altitudes, with the lowest index of richness recorded at 800 m. The highest number of Amplicon Sequence Variants was observed in bacteria, whose functional analysis revealed distinct metabolic adaptations across different altitudes. At 900 m, the main functional attributes favored the responses to environmental stimuli and microbial interactions; at 800 m, the predominant metabolic pathways were related to organic matter, fermentation, and bioremediation; and at the lower 600 m, the pathways shifted towards the breakdown of plant-derived compounds (e.g. geraniol, limonene, and pinene degradation). Conclusion: Overall, the results indicate a higher effectiveness of the microbial consortium at 800 m, which might result in better nutrient cycling. The study highlights the importance of canopy shade species and elevation for the composition of microbial consortia in C. arabica, unveiling ecological functions beyond plant health, with implications for bio-based solutions and biotechnology. [ABSTRACT FROM AUTHOR]

The present study evaluated the inhibitory effect of Ethiopian coffee (Coffea arabica) on carbohydrate digestive enzymes and its protective effect against glucose-induced testicular dysfunction using in vitro and in silico study models. Testicular oxidative stress was initiated by co-incubating testocular tissue collected from male Sprague-Dawley rats in glucose solution with different concentrations of Ethiopian coffee aqueous extracts (hot and cold) for 2 h at 37ºC. Glucose-mediated oxidative stress significantly (p < 0.05) depleted reduced glutathione and total glycogen levels while it lowered catalase and superoxide dismutase (SOD) activities in the testicular tissue. Concomitantly, this led to elevated malondialdehyde and nitric oxide levels while it also increased glycogen phosphorylase, fructose-1,6-bisphosphatase, ATPase, and acetylcholinesterase activities. Treatment with different concentrations of coffee aqueous extracts restored the enzymes' and markers' levels and activities. Although both the cold and hot coffee extracts strongly inhibited α-glucosidase and α-amylase enzymes, the former showed better activities. The subjection of the coffee extracts to LC-MS analysis indicated the presence of several compounds, including chlorogenic acid, caffeic acid, cafestol, kahweol, caffeine, quinic acid, ferulic acid, and catechol which were further docked with the carbohydrate digestive enzymes. The in silico results displayed that among the various metabolites, chlorogenic acid strongly interacted and had the best binding affinity with α-glucosidase and α-amylase. Our findings implied that Ethiopian coffee may have a preventive effect against glucose-induced testicular damage. These are evidenced by the capacity of the plant product to decrease oxidative stress and protect against testicular dysfunction. [ABSTRACT FROM AUTHOR]

Coffee berry disease (CBD) is not present in the Americas and presents a potential risk for growing coffee. Therefore, Colombia, which has been in scientific cooperation with the Centro de Investigação de Ferrugens do Cafeeiro (CIFC) of Portugal for more than 30 years, has been evaluating the genetic resistance of nine populations of C. arabica to 13 isolates of Colletotrichum kahawae JM Waller and PD Bridge, which are diverse in terms of aggressiveness and geographical origin. The phenotypes observed in the interaction between C. arabica and C. kahawae were used to develop a statistically reliable scale (p-value ≥ 0.001) to categorize resistance in C. arabica into five classes, and this scale was used to classify the nine populations of C. arabica evaluated. The results allowed us to corroborate the potential of Timor Hybrid CIFC 1343 (TH CIFC 1343) as a source of genetic resistance to CBD and to identify new genetic sources not yet explored for the development of varieties in Colombia that may eventually mitigate the effects of CBD in the face of increasing rainfall events and minimum temperatures due to climate change, which can favor disease development. Additionally, the results suggest that the existence of races in the C. arabica–C. kahawae complex is probable, and a selection of genotypes was identified as a possible differential series of races in C. kahawae. [ABSTRACT FROM AUTHOR]

The color of coffee fruits is influenced by several factors, including cultivar, ripening stage, and metabolite composition. However, the metabolic accumulation of pigments and the molecular mechanisms underlying peel coloration during the ripening process of Coffea arabica L. remain relatively understudied. In this study, UPLC-MS/MS-based metabolomics and RNA sequencing (RNA-seq)-based transcriptomics were integrated to investigate the accumulation of anthocyanins and carotenoids in the peel of Coffea arabica at different ripening stages: green peel (GP), green-yellow peel (GYRP), red peel (RP), and red-purple peel (RPP). This integration aimed at elucidating the molecular mechanisms associated with these changes. A total of ten anthocyanins, six carotenoids, and thirty-five xanthophylls were identified throughout the ripening process. The results demonstrated a gradual decrease in the total carotenoid content in the peel with fruit maturation, while anthocyanin content increased significantly. Notably, the accumulation of specific anthocyanins was closely associated with the transition of peel colors from green to red. Integrated metabolomics and transcriptomics analyses identified the GYRP stage as critical for this color transition. A weighted gene co-expression network analysis (WGCNA) revealed that enzyme-coding genes such as 3AT, BZ1, and lcyE, along with transcription factors including MYB, NAC, and bHLH, which interact with PHD and SET TR, may regulate the biosynthesis of anthocyanins and carotenoids, thereby influencing peel pigmentation. These findings provide valuable insights into the molecular mechanisms underlying the accumulation of anthocyanins and carotenoids in Coffea arabica peel during fruit maturation. [ABSTRACT FROM AUTHOR]

Copyright of Journal of Agricultural Science & Technology (1008-0864) is the property of Journal of Agricultural Science & Technology and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Remotely piloted aircraft (RPAs) have been increasingly used for crop protection in coffee plantations. However, the applications can result in low spray deposition on leaves and higher product losses between rows compared to ground airblast sprayers. This study aimed to evaluate the spray deposition on the coffee canopy and potential losses to the soil during application with an RPA and an airblast sprayer at varying spray volumes. The experiment comprised four spray treatments: RPA at 10 L ha−1 and 20 L ha−1, and airblast sprayer at 200 L ha−1 and 300 L ha−1. Leaf deposition was quantified by measuring a tracer on leaves from the lower and upper parts of the coffee canopy using spectrophotometry. Spray losses to the soil were measured by analyzing tracer residues on Petri dishes positioned within the inter-rows and beneath the coffee canopy. Statistical process control was used to analyze spray deposition quality in the study area. Ground-based airblast spraying resulted in the highest overall canopy deposition, while RPA spraying led to greater losses within the inter-rows. No significant difference was observed in spray runoff beneath the canopy between ground-based and aerial applications. Leaf deposition exhibited random variability across all application methods. Therefore, application stability, control, and spray quality standards were maintained. [ABSTRACT FROM AUTHOR]

A simple method set for assessing biochemical changes associated with osmotic stress responses was developed using coffee (Coffea arabica L.) leaf disks. Stress was induced by polyethylene glycol (PEG) exposure. Quantitative evaluation of tissue physiological stress parameters was carried out using analytical methods to validate the conversion of classic qualitative histochemical tests for localizing lipid peroxidation, hydrogen peroxide, and total xanthine alkaloids into semi-quantitative assays. Relative electrolyte leakage (EL%) and chlorophyll content (SPAD index) were also recorded. EL% levels of treated disks were higher than those of control ones, whereas SPAD indexes were comparable. Histochemical localization indicated that levels of lipid peroxidation, H2O2, and total xanthines were also higher under osmotic stress than in control conditions. Semi-quantitative data obtained by image processing of histochemical staining consistently matched quantitative evaluations. Chromatographic analyses revealed that theophylline and caffeine concentrations increased in the presence of PEG, whereas theobromine remained constant in relation to the control. The methods herein described can be useful to rapidly acquire initial data regarding biochemical osmotic stress responses in coffee tissues based on simple staining and imaging steps. Moreover, it is likely that the same method may be applicable to other types of stresses and plant species upon minor adjustments. [ABSTRACT FROM AUTHOR]

Abstract Background The nexus plant-microbe-environment is essential to understand the ecosystem processes shaping plant health and fitness. Within this triangle, soils and associated microflora are among the key ecosystem’s drivers, underpinning plant productivity and evolution. In this study, we conducted a comprehensive analysis (physicochemical properties, enzyme activities, and taxonomic diversity) of soils under the canopy projection of Coffea arabica trees along a gradient of elevation (600, 800, and 900 m) and shade (0, 50, 100%). Results While shade had no influence on most parameters, altitude shaped the dynamics of microbial communities. Available phosphorus, soil organic carbon, and nitrate were significantly higher at 800 m, likely due to the higher activities of β-glucosidase and phosphatases at this altitude. Microbial biomass (carbon and nitrogen) and moisture were significantly higher at 600 and 900 m, which might be attributed to the abundance and richness of soil microorganisms. Indeed, metabarcoding analysis revealed a complex pattern of microbial consortia (bacteria, archaea, fungi) at the three altitudes, with the lowest index of richness recorded at 800 m. The highest number of Amplicon Sequence Variants was observed in bacteria, whose functional analysis revealed distinct metabolic adaptations across different altitudes. At 900 m, the main functional attributes favored the responses to environmental stimuli and microbial interactions; at 800 m, the predominant metabolic pathways were related to organic matter, fermentation, and bioremediation; and at the lower 600 m, the pathways shifted towards the breakdown of plant-derived compounds (e.g. geraniol, limonene, and pinene degradation). Conclusion Overall, the results indicate a higher effectiveness of the microbial consortium at 800 m, which might result in better nutrient cycling. The study highlights the importance of canopy shade species and elevation for the composition of microbial consortia in C. arabica, unveiling ecological functions beyond plant health, with implications for bio-based solutions and biotechnology.

Abstract The present study evaluated the inhibitory effect of Ethiopian coffee (Coffea arabica) on carbohydrate digestive enzymes and its protective effect against glucose-induced testicular dysfunction using in vitro and in silico study models. Testicular oxidative stress was initiated by co-incubating testocular tissue collected from male Sprague-Dawley rats in glucose solution with different concentrations of Ethiopian coffee aqueous extracts (hot and cold) for 2 h at 37ºC. Glucose-mediated oxidative stress significantly (p

Brazil is the largest coffee-producing nation in the world. Over 50% of the national production comes from the Minas Gerais state, with relevant contribution of the region covered by the Cerrado biome. Given the threat posed by root-knot nematodes (RKN, Meloidogyne spp.) to coffee production, we collected plant and soil samples from infested plantations across 16 counties and identified the species of this pathogen. Based on the female perineal patterns, male morphology, esterase phenotypes and SCAR markers, the species found were Meloidogyne exigua, Meloidogyne paranaensis, Meloidogyne incognita and Meloidogyne arenaria. The most prevalent species was M. exigua, occurring in 83.8% of the sampled sites, followed by M. paranaensis (19%) and M. incognita (4.9%). Mixed populations of RKN were observed in 7.7% of the sites, with the highest prevalence of M. exigua + M. paranaensis and M. paranaensis + M. incognita, followed by M. exigua + M. incognita. Meloidogyne arenaria was found in one site, in a mixed population with M. paranaensis + M. exigua. Strategies to prevent the spread of these nematodes to non-infested areas are highly recommended, particularly focusing on the most aggressive species such as M. paranaensis and M. incognita. [ABSTRACT FROM AUTHOR]

Cold brew is a method of coffee extraction that uses low temperature, preserving the volatile compounds of coffee. Freeze-drying allows the preservation of coffee features and nutritional value. The aim of this study was to evaluate the effects of different cryoprotectants in cold brew extracts as a basis for freeze-dried coffee production. Thus, the Coffea arabica extracts and the soluble coffee were characterized concerning caffeine content, antioxidant capacity, total phenolic compounds, and antimicrobial activity to verify the potential of this method. The extracts did not show antimicrobial activity with a high soluble solid content. It was observed that the cold extraction methods were efficient regarding the caffeine content, antioxidant capacity, and total phenolic compounds. Freeze-dried coffees also did not show antimicrobial activity, and they maintained the water and humidity activity standards. In general, cryoprotectants displayed an unfavorable influence on the extract and freeze-dried coffee in the analyses performed. The coffee extract without cryoprotectants had a higher antioxidant capacity (88.12%) and content of phenolic compounds (7.74 mg AG/mL of the coffee extract). Only for the analyses of soluble solids, the cryoprotectants mannitol and fructose showed promising results (14.03 °Brix, 14.40 °Brix, 11.33 °Brix, respectively). Thus, for the analyses conducted, the cryoprotectants did not lead to significant advantages for this process. [ABSTRACT FROM AUTHOR]

Copyright of Revista Brasileira de Engenharia Agricola e Ambiental - Agriambi is the property of Revista Brasileira de Engenharia Agricola e Ambiental and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Remotely piloted aircraft (RPAs) have been increasingly used for crop protection in coffee plantations. However, the applications can result in low spray deposition on leaves and higher product losses between rows compared to ground airblast sprayers. This study aimed to evaluate the spray deposition on the coffee canopy and potential losses to the soil during application with an RPA and an airblast sprayer at varying spray volumes. The experiment comprised four spray treatments: RPA at 10 L ha−1 and 20 L ha−1, and airblast sprayer at 200 L ha−1 and 300 L ha−1. Leaf deposition was quantified by measuring a tracer on leaves from the lower and upper parts of the coffee canopy using spectrophotometry. Spray losses to the soil were measured by analyzing tracer residues on Petri dishes positioned within the inter-rows and beneath the coffee canopy. Statistical process control was used to analyze spray deposition quality in the study area. Ground-based airblast spraying resulted in the highest overall canopy deposition, while RPA spraying led to greater losses within the inter-rows. No significant difference was observed in spray runoff beneath the canopy between ground-based and aerial applications. Leaf deposition exhibited random variability across all application methods. Therefore, application stability, control, and spray quality standards were maintained.

Traditionally, coffee is propagated by seed. However, in recent years, the propagation of plants derived from somatic embryos has become increasingly important. The genetic homogeneity of plants derived from somatic embryos must be assessed before large-scale propagation. In this study, the genetic uniformity of somatic embryo–derived and seed-derived plants obtained from the same mother plant in two arabica hybrid coffee cultivars was examined using sequence-related amplified polymorphism (SRAP) and start codon-targeted (SCoT) markers, as well as the sequencing of seven functional genes. In both cultivars, the analysis of molecular markers revealed a remarkable genetic similarity of 93 to 98% between the plants derived from somatic embryos and those derived from seeds compared to the mother plant. Sequence analysis confirmed that the large subunit of ribulose-1,5-biphosphate carboxylase and mitochondrial ribosomal protein had the highest sequence similarity of all the genes studied. Among the five nuclear genes analyzed, the pathogenesis-related protein 1A-like gene showed the lowest sequence variability while the zinc finger protein gene showed the highest sequence variability compared to the NAC25, UDP-glycosyltransferase, and light-inducing protein chloroplastic-like genes. The presence of variable frequency of single-nucleotide polymorphisms (SNPs) and insertions and deletions (indels) created the overall sequence polymorphism across different genes. There was no substantial difference in sequence variability between plants derived from somatic embryos and those grown from seeds. This study represents the first comparative analysis of the genetic homogeneity of somatic embryo–derived and seed-derived plants of self-fertilized arabica coffee cultivars. [ABSTRACT FROM AUTHOR]

Climate change increases the risk of coffee yield due to the genotype-dependent effects of water deficit on coffee physiology. The goal of this research was to evaluate how water deficit altered the physiological and growth characteristics of arabica coffee (Coffea arabica L.). Water status, photosynthetic response to CO2 intercellular concentration (A/Ci curves) and growth parameters were evaluated in seedlings of four genotypes (Catimor ECU 02, Cavimor ECU, red Caturra and Sarchimor 4260). Most of the physiological traits evaluated differed significantly among genotypes. Between control and water deficit plants, significant variations occurred in the A/Ci parameters, showing a wide range of values for net photosynthetic rate, stomatal conductance, and water use efficiency, with decreases ranging from 4 to 74%. Maximum electron transport rate through photosystem II, highest rate of RuBisCO carboxylation, and triose phosphate utilization rate were all strongly decreased by water deficit 61% (red Caturra and Sarchimor 4260), followed by Cavimor ECU (35%) and Catimor ECU 02 (24%). Differences in response to water deficit among genotypes suggest possible genotypic differences in tolerance. The results indicated that Catimor ECU 02 and Cavimor ECU were less sensitive to water deficit, while red Caturra and Sarchimor 4260 were the most susceptible. [ABSTRACT FROM AUTHOR]

The semi-dry fermentation processing (SFP) of Coffea arabica is a traditional primary processing method in the coffee industry, which crucially impacts the coffee's flavor. To further obtain useful information on microbial communities and chemical compounds during the SFP of C. arabica from Yunnan, China, the microbial community structures and the differentially changed non-volatile compounds (DCnVCs) were comprehensively analyzed. The results showed that Tatumella, Staphylococcus, Klebsiella, Brevundimonas, and Gluconobacter were the most prevalent bacteria genera, and Candida, Hannaella, Hanseniaspora, Pichia, and Lachancea were the most abundant fungal genera. Furthermore, 117 DCnVCs were found in the fermentation-finished samples compared to the raw materials. Therefore, this study can provide useful information for understanding the SFP of coffee beans, and its impact on coffee's quality parameters. [ABSTRACT FROM AUTHOR]

Premise: Allopolyploidy—a hybridization‐induced whole‐genome duplication event—has been a major driver of plant diversification. The extent to which chromosomes pair with their proper homolog vs. with their homoeolog in allopolyploids varies across taxa, and methods to detect homoeologous gene flow (HGF) are needed to understand how HGF has shaped polyploid lineages. Methods: The ABBA‐BABA test represents a classic method for detecting introgression between closely related species, but here we developed a modified use of the ABBA‐BABA test to characterize the extent and direction of HGF in allotetraploid Coffea arabica. Results: We found that HGF is abundant in the C. arabica genome, with both subgenomes serving as donors and recipients of variation. We also found that HGF is highly maternally biased in plastid‐targeted—but not mitochondrial‐targeted—genes, as would be expected if plastid–nuclear incompatibilities exist between the two parent species. Discussion: Together, our analyses provide a simple framework for detecting HGF and new evidence consistent with selection favoring overwriting of paternally derived alleles by maternally derived alleles to ameliorate plastid–nuclear incompatibilities. Natural selection therefore appears to shape the direction and intensity of HGF in allopolyploid coffee, indicating that cytoplasmic inheritance has long‐term consequences for polyploid lineages. [ABSTRACT FROM AUTHOR]

The maturation of Arabica coffee fruits is influenced by both endogenous and external factors. The stage of fruit maturation affects the chemical composition of the beans, which in turn impacts the quality of the coffee beverage. During maturation, the fruit peel changes colour from green to red (cherry), signalling the optimal harvest time and suggesting high fruit quality. However, the degree of redness can vary, indicating different levels of maturity. This study aimed to explore the variation in soluble sugar accumulation in relation to the redness of coffee fruit tissues. We classified ripe fruits into six ripeness categories based on the intensity of the red colour of the epicarp, measured using a colourimeter. We analysed total soluble sugar, sucrose, and starch in three parts: coat (exocarp + mesocarp), coat juice (obtained by squeezing the coat), and beans. Our findings reveal that the variation in sugar in the endosperm does not correspond to changes in the coat, suggesting separate regulation of sugar accumulation, particularly sucrose, which is crucial for coffee quality. Our data indicate that there is no transfer of sucrose and reducing sugars from the red coat to the bean. [ABSTRACT FROM AUTHOR]

Coffee (Coffea arabica) cultivation is vital to the global economic, social and cultural life of farmers. However, senescent and disease-susceptible plantations affect coffee productivity. Therefore, it is crucial to improve biotechnological strategies such as micropropagation to increase the number of plants for replanting. In this study, the dark condition (T1) and different light qualities (T0-white light 400–700 nm; T2-red light 660 nm and T3-blue light 460 nm) were evaluated to optimize the in vitro propagation of 4 and 9 month-old coffee seeds. The results showed that red light had the highest percentage, an outstanding germination rate index, which may suggest that in the case of coffee seeds could be involved phytochromes that promote germination in a red light quality. In summary, the ideal conditions for in vitro micropropagation of coffee are under white and red light condition. [ABSTRACT FROM AUTHOR]

SUMMARY: Noncoding and coding RNAs are key regulators of plant growth, development, and stress responses. To investigate the types of transcripts accumulated during the vegetative to reproductive transition and floral development in the Coffea arabica L., we sequenced small RNA libraries from eight developmental stages, up to anthesis. We combined these data with messenger RNA and PARE sequencing of two important development stages that marks the transition of an apparent latent to a rapid growth stage. In addition, we took advantage of multiple in silico tools to characterize genomic loci producing small RNAs such as phasiRNAs, miRNAs, and tRFs. Our differential and co‐expression analysis showed that some types of small RNAs such as tRNAs, snoRNAs, snRNAs, and phasiRNAs preferentially accumulate in a stage‐specific manner. Members of the miR482/miR2118 superfamily and their 21‐nucleotide phasiRNAs originating from resistance genes show a robust co‐expression pattern that is maintained across all the evaluated developmental stages. Finally, the majority of miRNAs accumulate in a family stage‐specific manner, related to modulated hormonal responses and transcription factor expression. Significance Statement: Small RNAs in coffee floral development: unveiling stage‐specific accumulation patterns and regulatory networks. [ABSTRACT FROM AUTHOR]

Coffee fruit rot (CFR) is a well-known disease worldwide, mainly caused by Colletotrichum spp., the most important species being C. kahawae subsp. kahawae. In Puerto Rico, Colletotrichum spp. were identified as pathogens of coffee fruits. The coffee berry borer (CBB) was shown to be a dispersal agent of these fungi, and interaction of Fusarium with Colletotrichum affecting coffee fruits was suggested. In this study, we demonstrated that Fusarium spp. also cause CFR in Puerto Rico. Fusarium spp. are part of the CBB mycobiota, and this insect is responsible for spreading the pathogens in coffee fields. We identified nine Fusarium spp. (F. nirenbergiae, F. bostrycoides, F. crassum, F. hengyangense, F. solani-melongenae, F. pseudocircinatum, F. meridionale, F. concolor, and F. lateritium) belonging to six Fusarium species complexes isolated from CBBs and from rotten coffee fruits. Pathogenicity tests showed that F. bostrycoides, F. lateritium, F. nirenbergiae, F. solani-melongenae, and F. pseudocircinatum were pathogens causing CFR on green coffee fruits. F. bostrycoides was the predominant species isolated from the CBB mycobiota and coffee fruits with symptoms of CFR, suggesting a close relationship between F. bostrycoides and the CBB. To our knowledge, this is the first report of F. bostrycoides, F. solani-melongenae, F. pseudocircinatum, and F. nirenbergiae causing CFR worldwide and the first report of F. lateritium causing CFR in Puerto Rico. Understanding the CFR disease complex and how the CBB contributes to dispersing different Fusarium spp. on coffee farms is important to implement disease management practices in Puerto Rico and in other coffee-producing countries. [ABSTRACT FROM AUTHOR]

In this case study, the current situation faced by coffee growers attempting to control coffee leaf rust (Hemileia vastatrix) in Hawaii is reported. CLR is considered the most devastating disease affecting coffee crops worldwide and was detected in Hawaii in 2020. Three small coffee farms from the South Kona district of Hawaii Island were selected. The goals of this case study were to: (1) assist coffee growers in the early detection of CLR incidence, and consequently support farmers with recommendations for control, (2) record agronomic information and management practices, and (3) estimate the cost to control CLR during 2021 and 2022 seasons. Low CLR incidence (<4%) was initially observed at all farms (January–June 2021), but increased as the harvest began, ending the season (December 2021) at 77%, 21% and 6% incidence at farms 1, 2 and 3, respectively. At the end of 2022 season (December), CLR incidence reached 43%, 20% and 3% at farms 1, 2 and 3, respectively. The number of sprays per season (5–10), the type of fungicides applied (preventive, curative), the timing of sprays, the efficacy of applications and weather conditions all played a role in determining the infection rates at each farm. Effective control of CLR is possible in Hawaii if the sprays of fungicides are carried out with the right products, appropriate timing and good coverage. [ABSTRACT FROM AUTHOR]

As a significant crop growing all across the world, coffee is mostly produced in the bean belt of our global atlas. Worldwide variations in environmental conditions are causing a decline in the yield and quality of coffee varieties. Coffee production is the main emphasis of several traditional breeding techniques. But conventional breeding methods are not sufficient to tackle the problems related to coffee. The field of genomics, which includes transcriptomics, proteomics, and metabolomics, has made great paces in the last ten years. Proteomics is a well-known technique used to enhance the growth, yield, breeding, and quality of different plants under stable and shifting environments. The regulation of specific enzymes, genes, protein expression, modification, translation, and other features played an important role in the enhancement of important plants. However, relatively less research on the proteomics approach for coffee has been published in the last few years. For this reason, some of the most important aspects of proteome profiling for coffee plants have been covered in this review, including growth, the somatic embryo technique, altitude, environmental adoption, drought, and the role that proteins and important enzymes play in the flavor and taste of coffee. This review can aid in the breeding of new cultivars and improve coffee attributes. Furthermore, the present literature can pave the way for proteomics research on coffee. [ABSTRACT FROM AUTHOR]

IntroductionBreeding programs have developed high-yielding Coffea arabica F1-hybrids as an adaptation against adverse conditions associated with climate change. However, theresponse to drought of coffee F1 hybrids has seldom been assessed.MethodsA trial was established with five C. arabica genotypes (2 pure lines: Catimor and Marsellesa and 3 F1 hybrids: Starmaya, Centroamericano and Mundo Maya) planted under the leguminous tree species Leuceana leucocephala. Coffee growth, yield and physiological responses were assessed under a rain-fed (control: CON) and a rainfall reduction treatment (RR) for 2 years.ResultsThe RR treatment created a long-term rainfall deficit in a region with suboptimal temperature similar to those predicted by climate change scenarios. Moreover, the RR treatment reduced soil water content by 14% over 2 successive years of production and increased hydric stress of the three F1-hybrids (leaf water potentials averaged -0.8 MPa under RR compared with -0.4 MPa under CON). Under RR, coffee yields were reduced from 16 to 75% compared to CON. Mundo Maya F1 hybrid was the sole high-yielding genotype apable of sustaining its yield under RR conditions. Our results suggested that its significant increase in fine root density (CON = 300 and RR = 910 root.m-2) and its maintenance of photosynthetic rate (2.5 – 3.5 mmol CO2 m-2 s-1) at high evaporative demand might explain why this genotype maintained high yield under RR condition.DiscussionThis work highlights a possible drought tolerance mechanism in fruit bearing adult coffee trees where the plant fine root number increases to intake more water in order to preserve turgor and sustainphotosynthesis at high ETo and therefore conserves high yield in dry conditions.

ABSTRACTCoffee plants are likely to be highly susceptible to changes in climate, and several statistical studies based on projections of altered precipitation patterns have predicted negative effects on coffee growth including the loss of suitable cultivation areas in most coffee-producing countries. Increased drought occurrences owing to climate change are expected to be a new challenge for stable coffee production, because coffee production relies heavily on stable rainfall conditions. In recent years, ultra-fine bubble (UFB) water has been reported to be effective in alleviating environmental stresses for plant growth, especially drought stress. The objective of the present study was to determine the effect of UFB water irrigation on the growth of coffee seedlings to mitigate the stress of repeated droughts. To simulate an environment with frequent droughts, six pot experiments were conducted over 3 years by applying repeated drought stress to coffee plants in a greenhouse. The results showed that UFB water had a remarkable growth-promoting effect on coffee seedlings under drought conditions. In contrast, no significant effect on coffee growth was observed in the environment with sufficient nutrients, in which additional fertilizer was used. UFB water significantly increases the root length and surface area of coffee plants, which may promote water absorption and prevent leaf senescence (leaf cell collapse) under drought conditions. This leads to coffee plants adapting to drought conditions. Therefore, UFB water irrigation may be an effective measure to promote coffee growth in drought conditions.

Abstract Background The fruity aromatic bouquet of coffee has attracted recent interest to differentiate high value market produce as specialty coffee. Although the volatile compounds present in green and roasted coffee beans have been extensively described, no study has yet linked varietal molecular differences to the greater abundance of specific substances and support the aroma specificity of specialty coffees. Results This study compared four Arabica genotypes including one, Geisha Especial, suggested to generate specialty coffee. Formal sensory evaluations of coffee beverages stressed the importance of coffee genotype in aroma perception and that Geisha Especial-made coffee stood out by having fine fruity, and floral, aromas and a more balanced acidity. Comparative SPME–GC–MS analyses of green and roasted bean volatile compounds indicated that those of Geisha Especial differed by having greater amounts of limonene and 3-methylbutanoic acid in agreement with the coffee cup aroma perception. A search for gene ontology differences of ripening beans transcriptomes of the four varieties revealed that they differed by metabolic processes linked to terpene biosynthesis due to the greater gene expression of prenyl-pyrophosphate biosynthetic genes and terpene synthases. Only one terpene synthase (CaTPS10-like) had an expression pattern that paralleled limonene loss during the final stage of berry ripening and limonene content in the studied four varieties beans. Its functional expression in tobacco leaves confirmed its functioning as a limonene synthase. Conclusions Taken together, these data indicate that coffee variety genotypic specificities may influence ripe berry chemotype and final coffee aroma unicity. For the specialty coffee variety Geisha Especial, greater expression of terpene biosynthetic genes including CaTPS10-like, a limonene synthase, resulted in the greater abundance of limonene in green beans, roasted beans and a unique citrus note of the coffee drink.

In this case study, the current situation faced by coffee growers attempting to control coffee leaf rust (Hemileia vastatrix) in Hawaii is reported. CLR is considered the most devastating disease affecting coffee crops worldwide and was detected in Hawaii in 2020. Three small coffee farms from the South Kona district of Hawaii Island were selected. The goals of this case study were to: (1) assist coffee growers in the early detection of CLR incidence, and consequently support farmers with recommendations for control, (2) record agronomic information and management practices, and (3) estimate the cost to control CLR during 2021 and 2022 seasons. Low CLR incidence (

Objective: In vitro evaluate the antiaggregation and anticoagulation properties of aqueous plant extracts, including Viburnum opulus flowers and fruits, Urtica dioica leaves, Coffea arabica leaves, and shepherd's purse (Capsella bursa-pastoris) herb. Methods: In vitro assessment of anticoagulation activity was conducted by examining the impact on activated partial thromboplastin time (APTT), prothrombin time (PT), and fibrinogen levels. Anti-aggregation activity was evaluated using the Born turbidimetric method. Results: The research found that the phytoextracts examined did not impact the concentration of fibrinogen and PT. However, they did slightly prolong the APTT, and this effect was statistically significant compared to the control. Coffea arabica leaves, and Viburnum opulus fruit extracts showed substantial anticoagulant activity (30% and 29% sodium heparin, respectively; p-value

Abstract Whilst the importance of fungal primary biological aerosol particles (PBAPs) has been recognised, few studies have empirically assessed how land-use patterns influence them. Here, we show the impacts of different land-use patterns on fungal PBAPs within the Brazilian Atlantic Forest biodiversity hotspot. Spanning a distance of ca. 600 km within this biome, we collected fungal bioaerosols in the following land-use patterns: a 25-year-old coffee plantation, a 2.5-year-old Eucalyptus plantation, a 3-months-old maize crop, a 2-year-old and another 7-year-old native forest reforestation area, and a native forest fragment. Using the portable Burkard air sampler, a total of 14 morphotype-species were found. Cladosporium sp. comprised as much as about 95% of all fungal spores collected, being present in all samples (frequency of 100%). Forest systems had as much as 5-to-19-fold more fungal spores in the air than maize crops. Sampling height and time (morning vs. afternoon) did not influence fungal concentration and number of species. In addition, using data derived from an eddy covariance tower in the Eucalyptus site, we estimated the emission rate to be 6649 spores m−2 s−1. Our study confirms that land-use patterns affect fungal PBAPs, and that replacing large areas of native Atlantic Forest by monospecific stands, a homogenisation of airborne fungi is occurring, with unknown consequences for climate regulation.

Coffee Leaf Rust (CLR) is caused by Hemileia vastatrix in Coffea spp. It is one of the most dangerous phytopathogens for coffee plantations in terms of coffee productivity and coffee cup quality. In this review, we resume the problem of CLR in Mexico and the pathogenesis of H. vastatrix. The review abord plant-pathogen interactions which lead a compatible or incompatible interactions and result in CLR disease or resistance, respectively. The review abord Coffea spp. defense response pathways involved in H. vastatrix pathogenicity. Additionally, current measures to control H. vastatrix proliferation and germination were aborded focused on phytosanitary actions, and biological and chemical control. Finally, new trendlines to reduce the impact of CLR as nanoparticles and nanotechnology were analyzed. [ABSTRACT FROM AUTHOR]

Coffee plants are likely to be highly susceptible to changes in climate, and several statistical studies based on projections of altered precipitation patterns have predicted negative effects on coffee growth including the loss of suitable cultivation areas in most coffee-producing countries. Increased drought occurrences owing to climate change are expected to be a new challenge for stable coffee production, because coffee production relies heavily on stable rainfall conditions. In recent years, ultra-fine bubble (UFB) water has been reported to be effective in alleviating environmental stresses for plant growth, especially drought stress. The objective of the present study was to determine the effect of UFB water irrigation on the growth of coffee seedlings to mitigate the stress of repeated droughts. To simulate an environment with frequent droughts, six pot experiments were conducted over 3 years by applying repeated drought stress to coffee plants in a greenhouse. The results showed that UFB water had a remarkable growth-promoting effect on coffee seedlings under drought conditions. In contrast, no significant effect on coffee growth was observed in the environment with sufficient nutrients, in which additional fertilizer was used. UFB water significantly increases the root length and surface area of coffee plants, which may promote water absorption and prevent leaf senescence (leaf cell collapse) under drought conditions. This leads to coffee plants adapting to drought conditions. Therefore, UFB water irrigation may be an effective measure to promote coffee growth in drought conditions. [ABSTRACT FROM AUTHOR]

Consumers are increasingly looking for healthy foods without the addition of synthetic additives. The aim of this study was to evaluate the efficiency of coffee extracts as a natural antioxidant in fresh pork sausage. Firstly, the conditions for obtaining coffee green extracts were optimized (Central Composite Rotatable Design 23, variables: extraction time, ethanol–water ratio, and sample–solvent ratio) in an ultrasound bath (70 °C). The response variables were the bioactive compounds levels and antioxidant activity. Valid models were obtained (p ≤ 0.05, R2 > 0.751), with higher bioactive content and antioxidant activity in the central point region. Extracts of Robusta and Arabica coffee green (RG and AG) and medium roast (RR and AR) obtained, and central point (10 min, an ethanol concentration of 30%, and a sample–solvent ratio of 10 g/100 mL) and optimized (14.2 min, 34.2%, and 5.8 g/100 mL) parameters were characterized. The RG presented a significantly (p ≤ 0.05) higher content of caffeine (3114.8 ± 50.0 and 3148.1 ± 13.5 mg/100 g) and 5-CQA (6417.1 ± 22.0 and 6706.4 ± 23.5 mg/100 g) in both extraction conditions, respectively. The RG and RR coffee presented the highest antioxidant activity. Two concentrations of RG and RR coffee extracts were tested in fresh pork sausage. The Robusta coffee extract presented the highest antioxidant activity in both roasted and green states. However, when applied to a meat product, the extract prepared with RG coffee showed better results, with efficiency in replacing synthetic antioxidants (content of malonaldehyde/kg of sample below 0.696 ± 0.059 in 20 days of storage), without altering the sensory attributes of the product (average scores above 7.16 ± 1.43 for all attributes evaluated). Therefore, the RG coffee extract was a suitable alternative as a natural antioxidant applied to fresh pork sausage. [ABSTRACT FROM AUTHOR]

Background: The fruity aromatic bouquet of coffee has attracted recent interest to differentiate high value market produce as specialty coffee. Although the volatile compounds present in green and roasted coffee beans have been extensively described, no study has yet linked varietal molecular differences to the greater abundance of specific substances and support the aroma specificity of specialty coffees. Results: This study compared four Arabica genotypes including one, Geisha Especial, suggested to generate specialty coffee. Formal sensory evaluations of coffee beverages stressed the importance of coffee genotype in aroma perception and that Geisha Especial-made coffee stood out by having fine fruity, and floral, aromas and a more balanced acidity. Comparative SPME–GC–MS analyses of green and roasted bean volatile compounds indicated that those of Geisha Especial differed by having greater amounts of limonene and 3-methylbutanoic acid in agreement with the coffee cup aroma perception. A search for gene ontology differences of ripening beans transcriptomes of the four varieties revealed that they differed by metabolic processes linked to terpene biosynthesis due to the greater gene expression of prenyl-pyrophosphate biosynthetic genes and terpene synthases. Only one terpene synthase (CaTPS10-like) had an expression pattern that paralleled limonene loss during the final stage of berry ripening and limonene content in the studied four varieties beans. Its functional expression in tobacco leaves confirmed its functioning as a limonene synthase. Conclusions: Taken together, these data indicate that coffee variety genotypic specificities may influence ripe berry chemotype and final coffee aroma unicity. For the specialty coffee variety Geisha Especial, greater expression of terpene biosynthetic genes including CaTPS10-like, a limonene synthase, resulted in the greater abundance of limonene in green beans, roasted beans and a unique citrus note of the coffee drink. [ABSTRACT FROM AUTHOR]

Coffee berry disease (CBD), anthracnose of green berries of Arabica coffee, chronicles 100 years in 2022. The disease was detected for the first time in Kenya in 1922, and its causal pathogen was designated Colletotrichum coffeanum Noack (renamed C. kahawae). CBD has been causing substantial yield losses (ca. 80%) in susceptible varieties, and there has not been a coffee disease with a remarkable economic impact as CBD resulting in a sharp decline in total Arabica exports from Africa. During the past 100 years, a considerable amount of scientific knowledge on the biology, epidemiology, and management of coffee berry disease has been documented. The use of resistant varieties is the most empirical and effective CBD management practices in East Africa. The disease is still of great concern to Arabica producers and exporters around the world. There are unresolved issues that require the due attention of scientists and coffee communities. The nomenclature and taxonomic position of the fungus (C. coffeanum, C. kahawae, C. kahawae subsp. kahawae, and C. kahawae subsp. cigarro) confuse pathologists in identifying the actual cause of anthracnose in coffee berries and other hosts. The host resistance is consistently long-lasting. However, the nature of resistance and its inheritance mechanisms remained a major point of debate (oligogenic vs. polygenic), implicating that genetics of CBD resistance needs further in-depth analysis. This comprehensive review examines published information during the past 100 years that shows success stories; pinpoint contrasting research gaps that motivate scientists and sensitize coffee industries to the impact of coffee berry disease in Africa and beyond. [ABSTRACT FROM AUTHOR]

Traceability in the coffee supply chain is crucial for ensuring transparency and authenticity. It helps safeguard the interests of both producers and consumers by minimizing the risk of fraudulent practices and ensuring fair trade. Different geographical origins can lead to variances in coffee taste, quality of product and economic value. Just because controlling the authenticity of the geographical origin of coffee beans is of great importance for producers and consumers worldwide. This study determined parameters (caffeine, chlorogenic acids, total antioxidant capacity (TAC), total polyphenols content (TPC) volatile compounds, pH, water activity aw and dry matter) based on which was testing classification of geographical origin of coffee beans. For this research, six samples of 100% Coffea arabica medium roasting coffee beans, from the two major growing country of America and Africa were studied. As part of the research, variability in chemical composition based on geographical origin was confirmed. For America samples were significant parameters TAC, 4.5- dicaffeoylquinic acid, 3.5-dicaffeoylquinic acid, caffeine and chlorogenic acids. Second group was sample from Africa. For these samples was determine parameter like TPC, cryptochlorogenic acid, neochlorogenic acid and pH. Volatile substances, caffeine, pH, chlorogenic acids were considered the most important parameters that can help to identify the geographical origin. [ABSTRACT FROM AUTHOR]

Coffee leaf rust (CLR) is caused by the biotrophic pathogenic fungus Hemileia vastatrix. Despite being the most researched coffee disease, mysteries still exist relating to its epidemiology and biology. The objective of this work is to highlight past and present events concerning this prominent coffee disease. We start with an historical overview of the homeland of Coffea arabica, the Afromontane forest of south‐west Ethiopia, and then follow its journey across the globe linked to colonial trade and power struggles. We report the relevance of CLR to coffee production today, with a focus on the Americas and summarize unproven hypotheses in relation to the cause of recent epidemics. We present an original hypothesis concerning the first major outbreak occurring in 1869 in Ceylon (Sri Lanka), based on geopolitical connections to global trade. We review old and new options for management of the disease. The likelihood of a yet undetected alternate host of H. vastatrix is also considered as an additional piece of the epidemiological puzzle. Finally, we reflect on the interactions between H. vastatrix and a changing climate. By better understanding past events, linked to CLR, we may be better prepared for future outbreaks. [ABSTRACT FROM AUTHOR]

In the present study, information collected from 360 coffee‐cultivating households (HHs) is used to investigate perceptions of deficiencies in three sub‐counties in Eastern Uganda and to study changes in these perceptions between two survey rounds. The results of an explorative principal components analysis identify five factors affecting farmers' perceptions. Whereas perceptions of deficiencies in the preconditions for farm management activities differ significantly between the three sub‐counties investigated, indicators of deficiencies in general life quality are distributed more equally. Deteriorations are explained mainly by perceived changes in weather conditions. On the one hand, it can be assumed that the high constraint level will continue to increase in the future due to climate change and its impacts on life quality and the basic conditions required for farm management. On the other hand, access to resources such as water taps but also increased competition between buyers, have improved the situation. Results further indicate that if activities such as the expansion of information access and improvement of road conditions (after land registration) are implemented on a larger scale, these negative trends can be partly counteracted to help farmers maintain the conditions for effective farm management and improve their quality of life in the future. [ABSTRACT FROM AUTHOR]

Understanding the impact of drought stress on Arabica coffee physiology and metabolism is essential in the pursuit of developing drought-resistant varieties. In this study, we explored the physiological and metabolite changes in coffee genotypes exhibiting varying degrees of tolerance to drought—namely, the relatively tolerant Ca74110 and Ca74112, and the sensitive Ca754 and CaJ-19 genotypes—under well-watered conditions and during terminal drought stress periods at two time points (0 and 60 days following the onset of stress). The metabolite profiling uncovered significant associations between the growth and the physiological characteristics of coffee genotypes with distinct drought tolerance behaviors. Initially, no marked differences were observed among the genotypes or treatments. However, at the 60-day post-drought onset time point, notably higher shoot growth, biomass, CO2 assimilation, pigments, and various physiological parameters were evident, particularly in the relatively tolerant genotypes. The metabolite profiling revealed elevations in glucose, maltose, amino acids, and organic acids, and decreases in other metabolites. These alterations were more pronounced in the drought-tolerant genotypes, indicating a correlation between enhanced compatible solutes and energy-associated metabolites crucial for drought tolerance mechanisms. This research introduces GC-MS-based metabolome profiling to the study of Ethiopian coffee, shedding light on its intricate responses to drought stress and paving the way for the potential development of drought-resistant coffee seedlings in intensified agro-ecological zones. [ABSTRACT FROM AUTHOR]

Whilst the importance of fungal primary biological aerosol particles (PBAPs) has been recognised, few studies have empirically assessed how land-use patterns influence them. Here, we show the impacts of different land-use patterns on fungal PBAPs within the Brazilian Atlantic Forest biodiversity hotspot. Spanning a distance of ca. 600 km within this biome, we collected fungal bioaerosols in the following land-use patterns: a 25-year-old coffee plantation, a 2.5-year-old Eucalyptus plantation, a 3-months-old maize crop, a 2-year-old and another 7-year-old native forest reforestation area, and a native forest fragment. Using the portable Burkard air sampler, a total of 14 morphotype-species were found. Cladosporium sp. comprised as much as about 95% of all fungal spores collected, being present in all samples (frequency of 100%). Forest systems had as much as 5-to-19-fold more fungal spores in the air than maize crops. Sampling height and time (morning vs. afternoon) did not influence fungal concentration and number of species. In addition, using data derived from an eddy covariance tower in the Eucalyptus site, we estimated the emission rate to be 6649 spores m−2 s−1. Our study confirms that land-use patterns affect fungal PBAPs, and that replacing large areas of native Atlantic Forest by monospecific stands, a homogenisation of airborne fungi is occurring, with unknown consequences for climate regulation. [ABSTRACT FROM AUTHOR]

Simple Summary: Floral-visiting insects and pollinators play an important role in ecosystem services, and consequently, their identification and study are essential to their adequate preservation and management in crops of agricultural interest. Coffee is a worldwide commodity; however, the diversity of insects that visit its flowers has been little studied. The objective of this research was to quantify the abundance, richness, and functional diversity of coffee floral-visiting insects, especially bees. The results showed that coffee crops host a wide diversity of flower visitors, especially bees, which could be beneficial for productivity and contribute to the maintenance of plant species that accompany coffee cultivation. Despite the important role that flower-visiting insects play in agricultural production, none of the previous studies of coffee pollinators in Colombia have incorporated functional diversity into their analysis. Therefore, this study aimed to quantify the abundance, richness, and functional diversity of insects that visit flowers in coffee crops. Twenty-eight plots were selected among five sites in the north, center, and south of Colombia. In each plot, coffee flower insect visitors were collected and recorded on 90 trees at eight-minute intervals per tree, at three different times over three days. All sampling was carried out during two flowering events per year, over three years, resulting in a total of 1240 h of observations. Subsequently, the insects were taxonomically identified, and the number of individuals and species, as well as the diversity of the order q, were estimated. Functional diversity was also characterized in the bee community. The results: (a) 23,735 individuals belonging to 566 species were recorded; of them, 90 were bees, with the native species being the most abundant during 10:30 and 13:00 h; (b) bees formed five functional groups, with corbiculate and long-tongued non-corbiculate bees being the most abundant and occupying the largest regions of functional space; (c) potential pollinators in coffee crops are Apis mellifera, Nannotrigona gaboi, Tetragonisca angustula, Geotrigona cf. tellurica, and Partamona cf. peckolti. Coffee crops host a wide diversity of flower visitors, especially bees, which could be beneficial for productivity and contribute to the maintenance of plant species that accompany coffee cultivation. [ABSTRACT FROM AUTHOR]

One new cyclohexenone derivative, asperfumtone A (1) along with six known compounds were obtained from the coculture of Aspergillus fumigatus and Alternaria alternata associated with Coffea arabica. The configuration of 2 was first reported in the research. The structures were determined by extensive spectroscopic analyses, and ECD calculation. Compounds 3, 4 and 7 showed significant antifungal activities against coffee phytopathogens A. alternata and Fusarium incarnatum with MICs of 1 μg/mL. Compounds 1 and 2 showed weak antifungal activities against A. alternata and F. incarnatum with MICs of 32–64 μg/mL. [ABSTRACT FROM AUTHOR]