6,885 results on '"Collagens"'
Search Results
2. Species identification of modern and archaeological shark and ray skeletal tissues using collagen peptide mass fingerprinting.
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Buckley, Michael, Oldfield, Ellie-May, Oliveira, Cristina, Boulanger, Clara, Kitchener, Andrew C., Fuller, Nicole R., Ardren, Traci, Thompson, Victor D., Fitzpatrick, Scott M., and LeFebvre, Michelle J.
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PEPTIDE mass fingerprinting ,WILDLIFE conservation ,HAMMERHEAD sharks ,ACTINOPTERYGII ,RAYS (Fishes) ,MARINE biodiversity - Abstract
Introduction: Elasmobranchs, such as sharks and rays, are among the world's most endangered vertebrates, with over 70% loss in abundance over the past 50 years due to human impacts. Zooarchaeological baselines of elasmobranch diversity, distribution, and exploitation hold great promise for contributing essential historical contexts in the assessment of contemporary patterns in their taxonomic diversity and vulnerability to human-caused extinction. Yet, the historical ecology of elasmobranchs receives relatively less archaeological attention compared to that of ray-finned fishes or marine mammals, largely due to issues of taxonomic resolution across zooarchaeological identifications. Methods: We explore the use of Zooarchaeology by Mass Spectrometry (ZooMS) for species identification in this unstudied group, using an archaeological case study from the marine environments of the Florida Keys, a marine biodiversity hotspot that is home to an array of elasmobranch species and conservation efforts. By comparison with 39 modern reference species, we could distinguish 12 taxa within the zooarchaeological assemblage from the Clupper archaeological site (Upper Matecumbe Key) that included nine sharks, two rays and a sawfish. Results and discussion: The results indicate that, through additional complexity of the collagen peptide mass fingerprint, obtained due to the presence of the cartilaginous type II collagen, ZooMS collagen peptide mass fingerprinting provides exceptionally high taxonomic resolution in this group, yielding species-level identifications in all cases where sufficient reference material was used. This case study also highlights the added value of ZooMS for taxa that are more difficult to distinguish in zooarchaeological analyses, such as vertebrae of the Atlantic sharpnose shark (Rhizoprionodon terraenovae) and the hammerhead sharks (Sphyrna spp.) in the Florida Keys. Therefore, the application of collagen peptide mass fingerprinting to elasmobranchs offers great potential to improve our understanding of their archaeological past and historical ecology. [ABSTRACT FROM AUTHOR]
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- 2024
- Full Text
- View/download PDF
3. Fibroblast-Adipocyte Lineage Cell Interactions Result in Differential Production of Extracellular Matrix Proteins.
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Sander, Edward A., El-Hattab, Mariam Y., Jacobson, Kathryn R., Klingelhutz, Aloysius J., Ankrum, James A., and Calve, Sarah
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EXTRACELLULAR matrix proteins , *LIFE sciences , *CYTOLOGY , *MEDICAL sciences , *WOUND healing , *TANDEM mass spectrometry , *LIQUID chromatography-mass spectrometry - Abstract
Introduction: Scarring from traumatic injury, burns, and other complications remains a significant problem that diminishes quality of life for millions of people worldwide. A common target for the development of new therapies to promote healing and reduce scarring are myofibroblasts because of their central role in pathological scarring. Recent work indicates that adipocyte lineage cells also contribute to the wound healing process, including clinical reports that indicate that the placement of autologous adipose micrografts at the surgical site improves the appearance and pliability of existing scars. Methods: To better understand how adipocyte lineage cells interact with fibroblasts to promote healing, we first utilized an in vitro model of wound healing to visualize fibroblast spheroid collagen deposition via time-lapse imaging. We then introduced pre-adipocyte and adipocyte spheroids to visualize pair-wise spheroid interactions and collagen deposition among all three cell types. Finally, we quantified differences in the extracellular matrix (ECM) proteins produced using liquid chromatography with tandem mass spectrometry (LC-MS/MS). Results: We found that all three cell-types contribute to ECM deposition and that the composition of the ECM proteins, or matrisome, was significantly different depending on which cells were co-cultured together. Conclusions: By better understanding the interactions among these cell types, novel adipose-tissue-based therapeutic approaches can be developed to improve wound healing and reduce scar tissue. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Characterization of Extracellular Matrix Derived From Porcine Organs Decellularized Using Different Methods.
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Dhandapani, Vignesh, Boabekoa, Pakindame, Borduas, Martin, and Vermette, Patrick
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POLARIZATION microscopy ,CELL anatomy ,EXTRACELLULAR matrix ,HEMATOXYLIN & eosin staining ,MASS spectrometry ,CELL communication - Abstract
Regenerative medicine has extended the capacity of medicine to a point where tissues and organs could potentially be manufactured. This could resolve issues associated with organ transplantation. The extracellular matrix (ECM) provides a supportive scaffold and biochemical cues allowing cells to attach, proliferate, and differentiate. The ECM is composed of different fibrous proteins and proteoglycans. The extensive value of ECM lies in its dynamic microenvironment that aids in cell proliferation, differentiation, and regulation of intercellular communication. In this study, four methods were applied to decellularize porcine organs. The ECMs were characterized by histological methods illustrating the absence of nuclei and the presence of glycosaminoglycans (GAGs) and collagen. Hematoxylin and eosin analysis of native pancreas revealed necrosis by auto‐digestion, also supported by a reduced dsDNA content, and could have led to the destruction of Type IV collagen, laminins, and other proteins in the resulting ECMs, as confirmed by mass spectrometry. DNA quantification of ECM revealed residual dsDNA contents lower than those of the native organs. Bicinchoninic acid (BCA) assay showed a difference in protein content between organs. Mass spectrometry coupled with proteomic analysis highlighted a significant difference in the protein composition. The number of different proteins, in some cases with more than 2700, in the produced ECM depended on the applied decellularization technique. Polarization microscopy indicated differences in the orientation of collagen fibers. This study provides a multimodal approach to characterize ECMs produced using different decellularization techniques, aiding in finding a balance between maintaining the ultrastructure and composition of ECM, while removing cellular components. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Endoplasmic reticulum exit sites are segregated for secretion based on cargo size.
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Saxena, Sonashree, Foresti, Ombretta, Liu, Aofei, Androulaki, Stefania, Pena Rodriguez, Maria, Raote, Ishier, Aridor, Meir, Cui, Bianxiao, and Malhotra, Vivek
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CARGO handling , *GOLGI apparatus , *ENDOPLASMIC reticulum , *COMPLEX organizations , *SMALL molecules - Abstract
TANGO1, TANGO1-Short, and cTAGE5 form stable complexes at the endoplasmic reticulum exit sites (ERES) to preferably export bulky cargoes. Their C-terminal proline-rich domain (PRD) binds Sec23A and affects COPII assembly. The PRD in TANGO1-Short was replaced with light-responsive domains to control its binding to Sec23A in U2OS cells (human osteosarcoma). TANGO1-ShortΔPRD was dispersed in the ER membrane but relocated rapidly, reversibly, to pre-existing ERES by binding to Sec23A upon light activation. Prolonged binding between the two, concentrated ERES in the juxtanuclear region, blocked cargo export and relocated ERGIC53 into the ER, minimally impacting the Golgi complex organization. Bulky collagen VII and endogenous collagen I were collected at less than 47% of the stalled ERES, whereas small cargo molecules were retained uniformly at almost all the ERES. We suggest that ERES are segregated to handle cargoes based on their size, permitting cells to traffic them simultaneously for optimal secretion. [Display omitted] • Optogenetics-driven TANGO1S-Sec23A binding at ERES inhibits cargo export • Sustained TANGO1S-Sec23A-binding clusters ERES • 47% of ERES handle bulky cargo export, while small cargoes use ERES indiscriminately • ERES specialization balances the simultaneous export of both small and bulky cargoes Using optogenetics, Saxena et al. demonstrated that prolonged binding of TANGO1S-Sec23A stalls cargoes at ERES. Under these conditions, bulky cargoes like collagen concentrate at about 47% of these stalled ERES, whereas small cargoes accumulate uniformly, supporting segregation of export sites based on cargo size. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Thrombospondins: Conserved mediators and modulators of metazoan extracellular matrix.
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Adams, Josephine C.
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THROMBOSPONDINS , *CONNECTIVE tissues , *MOLECULAR phylogeny , *CHROMOSOME duplication , *CELL adhesion - Abstract
This review provides a personal overview of significant scientific developments in the thrombospondin field during the course of my career. Thrombospondins are multidomain, multimeric, calcium‐binding extracellular glycoproteins with context‐specific roles in tissue organisation. They act at cell surfaces and within ECM to regulate cell phenotype and signalling, differentiation and assembly of collagenous ECM, along with tissue‐specific roles in cartilage, angiogenesis and synaptic function. More recently, intracellular, homeostatic roles have also been identified. Resolution of structures for the major domains of mammalian thrombospondins has facilitated major advances in understanding thrombospondin biology from molecule to tissue; for example, in illuminating molecular consequences of disease‐causing coding mutations in human pseudoachrondroplasia. Although principally studied in vertebrates, thrombospondins are amongst the most ancient of animal ECM proteins, with many invertebrates encoding a single thrombospondin and the thrombospondin gene family of vertebrates originating through gene duplications. Moreover, thrombospondins form one branch of a thrombospondin superfamily that debuted at the origin of metazoans. The super‐family includes additional sub‐groups, present only in invertebrates, that differ in N‐terminal domain organisation, share the distinctive TSP C‐terminal region domain architecture and, to the limited extent studied to date, apparently contribute to tissue development and organisation. Finally, major lines of translational research are discussed, related to fibrosis; TSP1, TSP2 and inhibition of angiogenesis; and the alleviation of chronic cartilage tissue pathologies in pseudoachrondroplasia. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Features of the Amino Acid Composition of Gelatins from Organs and Tissues of Farm Animals (A Review).
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Zaitsev, S. Yu.
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ANIMAL waste , *POULTRY as food , *POULTRY farming , *BLOOD plasma , *GELATIN - Abstract
Gelatins are formed during processing of animal connective tissues (primarily collagens) and, from a biochemical point of view, are polypeptide products. In the case of the commercial gelatins the majority, on 52.5%, is made from the bovine skin and bones, on 46.0%—from porcine skin, and only 1.5%—from other animal tissues. At the beginning of the 21st century, the bulk of commercial gelatins are used in food industry, about a third in the medical sector, and only about 6% in technical or other industrial applications. Currently, trends toward a healthy lifestyle have intensified, which, along with the religious and cultural traditions of many countries, encourages scientists to look for gelatin sources not related to mammals but close to them in physicochemical and functional characteristics. Therefore, recently a tendency has emerged for a decline in the huge production of gelatins from mammals (cattle and pigs), although not significant compared with the relative increase in the production of gelatins from by-products and waste from industrial poultry farming. Moreover, over the past decades, global poultry meat production has increased by more than a third. It was shown that bovine and porcine skin gelatins have optimal amino acid (AA) compositions for their applications. Of course, the AA compositions of porcine and bovine gelatins obtained under different technological conditions may vary significantly. However, in general, these differences are not critical and, therefore, sometimes gelatins are obtained from mixed animal waste. Recently, in Russia, a composition of protein ingredients from porcine and bovine skin hydrolysates with the addition of dried blood plasma has been developed, which had a much better AA composition than traditional gelatins, and this suggested increased biological and nutritional values of the developed product. In addition, various authors found that some specific peptides improved a number of parameters and biological properties of gelatins from mixed animal waste. Thus, new compositions with an optimal AA composition and improved nutritional and functional properties are being actively developed on the basis of known gelatins. The present review provides a detailed description of the main studies on the AA composition of gelatins and its relationship with the key biochemical and technological indicators of gelatin-based materials. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Expression of Types I and III Collagens and Ultrastructure of the Extracellular Matrix in Rectal Adenocarcinoma of Different Differentiation Degree after Neoadjuvant Radiation Therapy.
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Bgatova, N. P., Skudin, N. E., Karpov, M. A., Taskaeva, Yu. S., Ryaguzov, M. E., Lomakin, A. I., Fursov, S. A., and Korolev, M. A.
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NEOADJUVANT chemotherapy , *RADIOTHERAPY , *EXTRACELLULAR matrix , *ELECTRON microscopy , *COLLAGEN - Abstract
The structural organization of the extracellular matrix of rectal adenocarcinoma of different differentiation degrees without and after neoadjuvant radiation therapy was studied on postoperative material using immunohistochemistry and electron microscopy. The differences in the expression of types I and III collagens, as well as in the ultrastructural organization of the extracellular matrix of rectal adenocarcinoma of different differentiation degrees without and after neoadjuvant radiation therapy were revealed. We observed high expression of collagen I and wide channels in the collagen matrix in the central areas of the well differentiated adenocarcinomas without neoadjuvant radiation therapy and in poorly differentiated adenocarcinomas after neoadjuvant radiation therapy, which can be associated with metastasis and poor prognosis for the patients. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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9. Modern views on the pathogenesis of intervertebral disc degeneration
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N. A. Shnayder, V. V. Trefilova, A. V. Ashkhotov, and O. A. Ovdienko
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degeneration ,back pain ,intervertebral disc ,hernia ,protrusion ,pathogenesis ,oxidative stress ,collagens ,proteoglycans ,cytokine imbalance ,apoptosis ,Medicine - Abstract
Introduction. Intervertebral disc (IVD) degeneration is defined as a multifactorial degenerative disease of the spine, starting from the structures of the nucleus pulposus of the IVD, spreading to the fibrous ring and other elements of the spinal motion segment. Unlike natural aging, a pathological degenerative process that occurs in IVDs as a result of the additive effect of genetic predisposition and external environmental factors leads to the formation of chronic back pain and reduces the patient’s quality of life. Despite many years of studying the problem of the pathogenesis of IVD degeneration, it is far from being resolved, which encourages us to further study the pathogenetic mechanisms of the development of this pathology.Aim. To update the knowledge of practicing neurologists about the results of modern studies of the leading mechanisms of development of IVD degeneration in humans and their role in the development of promising biomarkers of this pathology and new strategies for pathogenetic therapy.Materials and methods. A search and analysis of publications was carried out in Russian-language (e-Library) and Englishlanguage databases (PubMed, Oxford Press, Clinical Keys, Springer, Elsevier, Google Scholar). Search depth – 5 years (2018–2023).Results. The analyzed and generalized results of studies of the molecular mechanisms influencing the development and progression of this pathology are presented. The leading pathogenetic mechanisms for the development of IVD degeneration, such as oxidative stress and the NO system, cytokine imbalance, increased activity of matrix metalloproteinases, dysfunction of fibrillar collagens and proteoglycan, as well as their relationship with each other, were considered.Conclusion. The review provides a broader look at the pathogenetic mechanisms of IVD degeneration, which makes it possible to set new goals for future development of promising therapeutic strategies.
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- 2024
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10. The Role of Collagens in Atopic Dermatitis.
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Szalus, Krzysztof and Trzeciak, Magdalena
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ATOPIC dermatitis , *COLLAGEN , *FILAGGRIN , *EXTRACELLULAR matrix , *SKIN diseases , *SLEEP interruptions , *ECZEMA - Abstract
Atopic dermatitis (AD) is a chronic inflammatory skin disease affecting both children and adults. The clinical picture of AD manifests in typical skin lesions, such as localized eczema and dry skin, with dominant, persistent itching that leads to sleep disturbances. The pathophysiology of AD has been extensively investigated with respect to epigenetic and genetic factors, skin barrier defects, as well as immunological and microbial disorders. However, to date, the involvement of extracellular matrix (ECM) elements has received limited attention. Collagen, a major component of the ECM, may serve as a therapeutic target for the future treatment of AD. This paper summarizes the role of collagens, which are the most abundant components of the extracellular matrix in AD. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Extracellular Matrix Modulation by Cancer-Derived Extracellular Vesicles: Impact on Cancer Malignancy
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Nishida-Aoki, Nao, Ochiya, Takahiro, Karamanos, Nikos K., Series Editor, Kletsas, Dimitris, Editorial Board Member, Oh, Eok-Soo, Editorial Board Member, Passi, Alberto, Editorial Board Member, Pihlajaniemi, Taina, Editorial Board Member, Ricard-Blum, Sylvie, Editorial Board Member, Sagi, Irit, Editorial Board Member, Savani, Rashmin, Editorial Board Member, Watanabe, Hideto, Editorial Board Member, and Rilla, Kirsi, editor
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- 2024
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12. Composition of the Extracellular Matrix
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Aumailley, Monique, Maia, F. Raquel, editor, Oliveira, J. Miguel, editor, and Reis, Rui L., editor
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- 2024
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13. Species identification of modern and archaeological shark and ray skeletal tissues using collagen peptide mass fingerprinting
- Author
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Michael Buckley, Ellie-May Oldfield, Cristina Oliveira, Clara Boulanger, Andrew C. Kitchener, Nicole R. Fuller, Traci Ardren, Victor D. Thompson, Scott M. Fitzpatrick, and Michelle J. LeFebvre
- Subjects
collagens ,cartilage ,ZooMS ,species identification ,Florida Keys ,proteomics ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
IntroductionElasmobranchs, such as sharks and rays, are among the world’s most endangered vertebrates, with over 70% loss in abundance over the past 50 years due to human impacts. Zooarchaeological baselines of elasmobranch diversity, distribution, and exploitation hold great promise for contributing essential historical contexts in the assessment of contemporary patterns in their taxonomic diversity and vulnerability to human-caused extinction. Yet, the historical ecology of elasmobranchs receives relatively less archaeological attention compared to that of ray-finned fishes or marine mammals, largely due to issues of taxonomic resolution across zooarchaeological identifications.MethodsWe explore the use of Zooarchaeology by Mass Spectrometry (ZooMS) for species identification in this unstudied group, using an archaeological case study from the marine environments of the Florida Keys, a marine biodiversity hotspot that is home to an array of elasmobranch species and conservation efforts. By comparison with 39 modern reference species, we could distinguish 12 taxa within the zooarchaeological assemblage from the Clupper archaeological site (Upper Matecumbe Key) that included nine sharks, two rays and a sawfish.Results and discussionThe results indicate that, through additional complexity of the collagen peptide mass fingerprint, obtained due to the presence of the cartilaginous type II collagen, ZooMS collagen peptide mass fingerprinting provides exceptionally high taxonomic resolution in this group, yielding species-level identifications in all cases where sufficient reference material was used. This case study also highlights the added value of ZooMS for taxa that are more difficult to distinguish in zooarchaeological analyses, such as vertebrae of the Atlantic sharpnose shark (Rhizoprionodon terraenovae) and the hammerhead sharks (Sphyrna spp.) in the Florida Keys. Therefore, the application of collagen peptide mass fingerprinting to elasmobranchs offers great potential to improve our understanding of their archaeological past and historical ecology.
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- 2024
- Full Text
- View/download PDF
14. Early-life low-calorie sweetener consumption disrupts glucose regulation, sugar-motivated behavior, and memory function in rats
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Tsan, Linda, Chometton, Sandrine, Hayes, Anna Mr, Klug, Molly E, Zuo, Yanning, Sun, Shan, Bridi, Lana, Lan, Rae, Fodor, Anthony A, Noble, Emily E, Yang, Xia, Kanoski, Scott E, and Schier, Lindsey A
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Biomedical and Clinical Sciences ,Behavioral and Social Science ,Basic Behavioral and Social Science ,Pharmacology and Pharmaceutical Sciences ,Genetics ,Prevention ,Obesity ,Women's Health ,Microbiome ,Pediatric ,Neurosciences ,Mental Health ,Childhood Obesity ,Diabetes ,Nutrition ,Oral and gastrointestinal ,Stroke ,Metabolic and endocrine ,Animals ,Rats ,Sweetening Agents ,Saccharin ,Sugars ,Glucose ,Energy Intake ,Collagens ,Development ,Glucose metabolism ,Memory ,Neuroscience ,Biomedical and clinical sciences ,Health sciences - Abstract
Low-calorie sweetener (LCS) consumption in children has increased dramatically due to its widespread presence in the food environment and efforts to mitigate obesity through sugar replacement. However, mechanistic studies on the long-term impact of early-life LCS consumption on cognitive function and physiological processes are lacking. Here, we developed a rodent model to evaluate the effects of daily LCS consumption (acesulfame potassium, saccharin, or stevia) during adolescence on adult metabolic, behavioral, gut microbiome, and brain transcriptomic outcomes. Results reveal that habitual early-life LCS consumption impacts normal postoral glucose handling and impairs hippocampal-dependent memory in the absence of weight gain. Furthermore, adolescent LCS consumption yielded long-term reductions in lingual sweet taste receptor expression and brought about alterations in sugar-motivated appetitive and consummatory responses. While early-life LCS consumption did not produce robust changes in the gut microbiome, brain region-specific RNA-Seq analyses reveal LCS-induced changes in collagen- and synaptic signaling-related gene pathways in the hippocampus and nucleus accumbens, respectively, in a sex-dependent manner. Collectively, these results reveal that habitual early-life LCS consumption has long-lasting implications for glucoregulation, sugar-motivated behavior, and hippocampal-dependent memory in rats, which may be based in part on changes in nutrient transporter, sweet taste receptor, and central gene pathway expression.
- Published
- 2022
15. Giant peritoneal loose body and its protein composition: a case report
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Sang, Weicong, Li, Yang, Hong, Xiaoping, Qu, Haihong, Zhu, Rujian, and Yi, Qingtong
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- 2024
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16. Restraining of glycoprotein VI- and integrin α2β1-dependent thrombus formation by platelet PECAM1
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Jooss, Natalie J., Diender, Marije G., Fernández, Delia I., Huang, Jingnan, Heubel-Moenen, Floor C. J., van der Veer, Arian, Kuijpers, Marijke J. E., Poulter, Natalie S., Henskens, Yvonne M. C., te Loo, Maroeska, and Heemskerk, Johan W. M.
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- 2024
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17. Investigating the Role of SNAI1 and ZEB1 Expression in Prostate Cancer Progression and Immune Modulation of the Tumor Microenvironment.
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Lautert-Dutra, William, Melo, Camila Morais, Chaves, Luiz Paulo, Sousa, Francisco Cesar, Crozier, Cheryl, Dion, Dan, Avante, Filipe S., Saggioro, Fabiano Pinto, dos Reis, Rodolfo Borges, Archangelo, Leticia Fröhlich, Bayani, Jane, and Squire, Jeremy A.
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RISK assessment , *FLOW cytometry , *CANCER relapse , *EPITHELIAL-mesenchymal transition , *T-test (Statistics) , *RESEARCH funding , *IMMUNOTHERAPY , *PROSTATE tumors , *TUMOR markers , *CANCER patients , *RETROSPECTIVE studies , *GENE expression , *BIOINFORMATICS , *LONGITUDINAL method , *KAPLAN-Meier estimator , *GENE expression profiling , *DATA analysis software , *DISEASE progression , *NEOVASCULARIZATION , *IMMUNE checkpoint proteins , *DISEASE risk factors - Abstract
Simple Summary: We evaluate the downstream effects of the Epithelial-to-Mesenchymal Transition (EMT) transcription factors, ZEB1 and SNAI1, and analyze their potential significance as biomarkers for increased aggressiveness and immune response in prostate cancer (PCa). We used two commercial expression profiling panels to examine a primary PCa cohort (n = 51) and identified changes in gene expression linked to downstream pathways associated with biochemical recurrence and increased clinical risk. Genes such as COL1A1, COL1A2, and COL3A1, which are implicated in the tumor microenvironment, and immune-related genes, such as THY1, IRF5, and HLA-DRA, exhibited significant expression level changes. Enrichment analysis identified pathways associated with angiogenesis, TGF-beta, EMT, and UV response in PCa progression. Confirmatory analyses conducted using public domain data demonstrated the downstream impacts of ZEB1 and SNAI1 on pathways and immune responses, highlighting their potential influence on immune modulation in PCa. Future treatment strategies aimed at modulating EMT may enhance immune cell infiltration toward an anti-tumorigenic phenotype. Prostate cancer (PCa) is an immunologically cold tumor and the molecular processes that underlie this behavior are poorly understood. In this study, we investigated a primary cohort of intermediate-risk PCa (n = 51) using two NanoString profiling panels designed to study cancer progression and immune response. We identified differentially expressed genes (DEGs) and pathways associated with biochemical recurrence (BCR) and clinical risk. Confirmatory analysis was performed using the TCGA-PRAD cohort. Noteworthy DEGs included collagens such as COL1A1, COL1A2, and COL3A1. Changes in the distribution of collagens may influence the immune activity in the tumor microenvironment (TME). In addition, immune-related DEGs such as THY1, IRF5, and HLA-DRA were also identified. Enrichment analysis highlighted pathways such as those associated with angiogenesis, TGF-beta, UV response, and EMT. Among the 39 significant DEGs, 11 (28%) were identified as EMT target genes for ZEB1 using the Harmonizome database. Elevated ZEB1 expression correlated with reduced BCR risk. Immune landscape analysis revealed that ZEB1 was associated with increased immunosuppressive cell types in the TME, such as naïve B cells and M2 macrophages. Increased expression of both ZEB1 and SNAI1 was associated with elevated immune checkpoint expression. In the future, modulation of EMT could be beneficial for overcoming immunotherapy resistance in a cold tumor, such as PCa. [ABSTRACT FROM AUTHOR]
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- 2024
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18. Dysfunctional latent transforming growth factor β activation after corneal injury in a classical Ehlers–Danlos model.
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Sun, Mei, Acosta, Ana Carolina, Emerick, Victoria, Adams, Sheila, Avila, Marcel Y, Margo, Curtis E, and Espana, Edgar M
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TRANSFORMING growth factors , *CORNEA injuries , *EHLERS-Danlos syndrome , *WOUND healing , *EXTRACELLULAR matrix - Abstract
• Col5a1 +/- corneas heal poorly after incisional injuries with persistence of open wounds and larger scars. • Col5a1 +/− myofibroblasts failed to activate latent TGF-β1 in vitro. • In vivo , after full thickness corneal wounds, Smad4 failed to translocate to the nucleus in Col5a1 +/− cells when compared to Col5a1 +/+. • A disorganized collagen matrix with undulated/wavy fibrils is formed in Col5a1 +/- corneas that contain 50 % collagen V. Patients with classical Ehlers Danlos syndrome (cEDS) suffer impaired wound healing and from scars formed after injuries that are atrophic and difficult to close surgically. Haploinsufficiency in COL5A1 creates systemic morphological and functional alterations in the entire body. We investigated mechanisms that impair wound healing from corneal lacerations (full thickness injuries) in a mouse model of cEDS (Col5a1 +/−). We found that collagen V reexpression in this model is upregulated during corneal tissue repair and that wound healing is delayed, impaired, and results in large atrophic corneal scars. We noted that in a matrix with a 50 % content of collagen V, activation of latent Transforming Growth Factor (TGF) β is dysregulated. Corneal myofibroblasts with a haploinsufficiency of collagen V failed to mechanically activate latent TGF β. Second harmonic imaging microscopy showed a disorganized, undulated, and denser collagen matrix in our Col5a1 +/- model that suggested alterations in the extracellular matrix structure and function. We hypothesize that a regenerated collagen matrix with only 50 % content of collagen V is not resistant enough mechanically to allow adequate activation of latent TGF β by fibroblasts and myofibroblasts. [ABSTRACT FROM AUTHOR]
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- 2024
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19. Homeoprotein SIX1 compromises antitumor immunity through TGF-β-mediated regulation of collagens
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Liu, Wancheng, Gao, Meiling, Li, Lili, Chen, Yu, Fan, Huimin, Cai, Qiaomei, Shi, Yueyue, Pan, Chaohu, Liu, Junxiao, Cheng, Lucy S, Yang, Heng, and Cheng, Genhong
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Immunotherapy ,Genetics ,Cancer ,2.1 Biological and endogenous factors ,Cell Line ,Tumor ,Collagen ,Homeodomain Proteins ,Humans ,Signal Transduction ,Transforming Growth Factor beta ,Homeoprotein SIX1 ,anti-tumor immunity ,collagens ,collagens. ,Biochemistry and Cell Biology - Abstract
The tumor microenvironment (TME), including infiltrated immune cells, is known to play an important role in tumor growth; however, the mechanisms underlying tumor immunogenicity have not been fully elucidated. Here, we discovered an unexpected role for the transcription factor SIX1 in regulating the tumor immune microenvironment. Based on analyses of patient datasets, we found that SIX1 was upregulated in human tumor tissues and that its expression levels were negatively correlated with immune cell infiltration in the TME and the overall survival rates of cancer patients. Deletion of Six1 in cancer cells significantly reduced tumor growth in an immune-dependent manner with enhanced antitumor immunity in the TME. Mechanistically, SIX1 was required for the expression of multiple collagen genes via the TGFBR2-dependent Smad2/3 activation pathway, and collagen deposition in the TME hampered immune cell infiltration and activation. Thus, our study uncovers a crucial role for SIX1 in modulating tumor immunogenicity and provides proof-of-concept evidence for targeting SIX1 in cancer immunotherapy.
- Published
- 2021
20. Comparative effect of platelet- and mesenchymal stromal cell-derived extracellular vesicles on human cartilage explants using an ex vivo inflammatory osteoarthritis model
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Maria A. Forteza-Genestra, Miquel Antich-Rosselló, Guillem Ramis-Munar, Javier Calvo, Antoni Gayà, Marta Monjo, and Joana M. Ramis
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platelet lysate ,osteoarthritis ,extracellular vesicles ,regenerative medicine ,cartilage repair ,human umbilical cord mesenchymal stromal cells ,mesenchymal stromal cells ,osteoarthritis (oa) ,cartilage ,platelets ,glycosaminoglycans (gag) ,collagens ,mscs ,dna ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Aims: Extracellular vesicles (EVs) are nanoparticles secreted by all cells, enriched in proteins, lipids, and nucleic acids related to cell-to-cell communication and vital components of cell-based therapies. Mesenchymal stromal cell (MSC)-derived EVs have been studied as an alternative for osteoarthritis (OA) treatment. However, their clinical translation is hindered by industrial and regulatory challenges. In contrast, platelet-derived EVs might reach clinics faster since platelet concentrates, such as platelet lysates (PL), are already used in therapeutics. Hence, we aimed to test the therapeutic potential of PL-derived extracellular vesicles (pEVs) as a new treatment for OA, which is a degenerative joint disease of articular cartilage and does not have any curative or regenerative treatment, by comparing its effects to those of human umbilical cord MSC-derived EVs (cEVs) on an ex vivo OA-induced model using human cartilage explants. Methods: pEVs and cEVs were isolated by size exclusion chromatography (SEC) and physically characterized by nanoparticle tracking analysis (NTA), protein content, and purity. OA conditions were induced in human cartilage explants (10 ng/ml oncostatin M and 2 ng/ml tumour necrosis factor alpha (TNFα)) and treated with 1 × 109 particles of pEVs or cEVs for 14 days. Then, DNA, glycosaminoglycans (GAG), and collagen content were quantified, and a histological study was performed. EV uptake was monitored using PKH26 labelled EVs. Results: Significantly higher content of DNA and collagen was observed for the pEV-treated group compared to control and cEV groups. No differences were found in GAG quantification nor in EVs uptake within any treated group. Conclusion: In conclusion, pEVs showed better performance than cEVs in our in vitro OA model. Although further studies are needed, pEVs are shown as a potential alternative to cEVs for cell-free regenerative medicine. Cite this article: Bone Joint Res 2023;12(10):667–676.
- Published
- 2023
- Full Text
- View/download PDF
21. Regeneration of injured articular cartilage using the recombinant human amelogenin protein
- Author
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Omer Helwa-Shalom, Faris Saba, Elad Spitzer, Salem Hanhan, Koby Goren, Shany I. Markowitz, Dekel Shilo, Nissim Khaimov, Yechiel N. Gellman, Dan Deutsch, Anat Blumenfeld, Hani Nevo, and Amir Haze
- Subjects
amelogenin ,articular cartilage ,osteochondral injury ,rat model ,mesenchymal stem cells (mscs) ,collagens ,subchondral bone ,cartilage ,type i collagen ,proteoglycans ,immunohistochemistry ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Aims: Cartilage injuries rarely heal spontaneously and often require surgical intervention, leading to the formation of biomechanically inferior fibrous tissue. This study aimed to evaluate the possible effect of amelogenin on the healing process of a large osteochondral injury (OCI) in a rat model. Methods: A reproducible large OCI was created in the right leg femoral trochlea of 93 rats. The OCIs were treated with 0.1, 0.5, 1.0, 2.5, or 5.0 μg/μl recombinant human amelogenin protein (rHAM+) dissolved in propylene glycol alginate (PGA) carrier, or with PGA carrier alone. The degree of healing was evaluated 12 weeks after treatment by morphometric analysis and histological evaluation. Cell recruitment to the site of injury as well as the origin of the migrating cells were assessed four days after treatment with 0.5 μg/μl rHAM+ using immunohistochemistry and immunofluorescence. Results: A total of 12 weeks after treatment, 0.5 μg/μl rHAM+ brought about significant repair of the subchondral bone and cartilage. Increased expression of proteoglycan and type II collagen and decreased expression of type I collagen were revealed at the surface of the defect, and an elevated level of type X collagen at the newly developed tide mark region. Conversely, the control group showed osteoarthritic alterations. Recruitment of cells expressing the mesenchymal stem cell (MSC) markers CD105 and STRO-1, from adjacent bone marrow toward the OCI, was noted four days after treatment. Conclusion: We found that 0.5 μg/μl rHAM+ induced in vivo healing of injured articular cartilage and subchondral bone in a rat model, preventing the destructive post-traumatic osteoarthritic changes seen in control OCIs, through paracrine recruitment of cells a few days after treatment. Cite this article: Bone Joint Res 2023;12(10):615–623.
- Published
- 2023
- Full Text
- View/download PDF
22. Levels of type XVII collagen (BP180) ectodomain are elevated in circulation from patients with multiple cancer types and is prognostic for patients with metastatic colorectal cancer
- Author
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Marina Crespo-Bravo, Jeppe Thorlacius-Ussing, Neel I. Nissen, Rasmus S. Pedersen, Mogens K. Boisen, Maria Liljefors, Astrid Z. Johansen, Julia S. Johansen, Morten A. Karsdal, and Nicholas Willumsen
- Subjects
Collagens ,ECM ,Non-invasive biomarker ,Epithelial damage ,Type XVII collagen ,Ectodomain ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Collagens are the major components of the extracellular matrix (ECM) and are known to contribute to tumor progression and metastasis. There are 28 different types of collagens each with unique functions in maintaining tissue structure and function. Type XVII collagen (BP180) is a type II transmembrane protein that provides stable adhesion between epithelial cells and the underlying basement membrane. Aberrant expression and ectodomain shedding of type XVII collagen have been associated with epithelial damage, tumor invasiveness, and metastasis in multiple tumor types and may consequently be used as a potential (non-invasive) biomarker in cancer and treatment target. Method An ELISA targeting the type XVII collagen ectodomain (PRO-C17) was developed for use in serum. PRO-C17 was measured in a cohort of patients with 11 different cancer types (n = 214) and compared to healthy controls (n = 23) (cohort 1). Based on the findings from cohort 1, PRO-C17 and its association with survival was explored in patients with metastatic colorectal cancer (mCRC) treated with bevacizumab in combination with chemotherapy (n = 212) (cohort 2). Results PRO-C17 was robust and specific towards the ectodomain of type XVII collagen. In cohort 1, PRO-C17 levels were elevated (p
- Published
- 2023
- Full Text
- View/download PDF
23. Collagen Mimicry with a Short Collagen Model Peptide.
- Author
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Mukherjee, Smriti, Sundarapandian, Ashokraj, Ayyadurai, Niraikulam, and Shanmugam, Ganesh
- Subjects
- *
PEPTIDES , *COLLAGEN , *HYDROGEN bonding interactions , *MELTING points , *BUFFER solutions - Abstract
Mimicking triple helix and fibrillar network of collagen through collagen model peptide(CMP) with short GPO tripeptide repeats is a great challenge. Herein, a minimalistic CMP comprising only five GPO repeats [(GPO)5] is presented. This novel approach involves the fusion of ultrashort peptide with the synergetic power of π‐system and β‐sheet formation to short CMP (GPO)5. Accordingly, a hydrogel‐forming, fluorenylmethoxycarbonyl (Fmoc)‐functionalized ultrashort peptide (NFGAIL) is fused at the N‐terminus and phenylalanine at the C‐terminus of (GPO)5 (Fmoc‐NFGAIL‐(GPO)5‐F‐COOH, FmP‐5GPO). At room temperature, it forms a robust triple helix in aqueous buffer solution and has a relatively high melting point of 35 °C. The fluorenyl motif stabilizes the triple helix by aromatic π–π interactions as in its absence, triple helix is not formed. NFGAIL, which forms a β‐sheet, also aids in triple helix stabilization via intermolecular hydrogen bonding and hydrophobic interactions. FmP‐5GPO forms highly entangled nanofibrils with a micrometer length, which have excellent cell viability. The achievement of stable triple helix and fibrils in such a short CMP(FmP‐5GPO) sequence is a challenging feat, and its significance in CMP‐based biomaterials is undeniable. The present strategy highlights the potential for developing new CMP sequences through intelligent tuning of fusion peptides and GPO repeats. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
24. 'Speed‐ageing' of human skin in serum‐free organ culture ex vivo: An instructive novel assay for preclinical human skin ageing research demonstrates senolytic effects of caffeine and 2,5‐dimethylpyrazine.
- Author
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van Lessen, Max, Mardaryev, Andrei, Broadley, David, Bertolini, Marta, Edelkamp, Janin, Kückelhaus, Maximilian, Funk, Wolfgang, Bíró, Tamás, and Paus, Ralf
- Subjects
- *
SKIN aging , *ORGAN culture , *ORGANS (Anatomy) , *SERUM-free culture media , *CAFFEINE - Abstract
Preclinical human skin ageing research has been limited by the paucity of instructive and clinically relevant models. In this pilot study, we report that healthy human skin of different age groups undergoes extremely accelerated ageing within only 3 days, if organ‐cultured in a defined serum‐free medium. Quantitative (immuno‐)histomorphometry documented this unexpected ex vivo phenotype on the basis of ageing‐associated biomarkers: the epidermis showed significantly reduced rete ridges and keratinocyte proliferation, sirtuin‐1, MTCO1 and collagen 17a1 protein levels; this contrasted with significantly increased expression of the DNA‐damage marker, γH2A.X. In the dermis, collagen 1 and 3 and hyaluronic acid content were significantly reduced compared to Day 0 skin. qRT‐PCR of whole skin RNA extracts also showed up‐regulated mRNA levels of several (inflamm‐) ageing biomarkers (MMP‐1, ‐2, ‐3, ‐9; IL6, IL8, CXCL10 and CDKN1). Caffeine, a methylxanthine with recognized anti‐ageing properties, counteracted the dermal collagen 1 and 3 reduction, the epidermal accumulation of γH2A.X, and the up‐regulation of CXCL10, IL6, IL8, MMP2 and CDKN1. Finally, we present novel anti‐ageing effects of topical 2,5‐dimethylpyrazine, a natural pheromone TRPM5 ion channel activator. Thus, this instructive, clinically relevant "speed‐ageing" assay provides a simple, but powerful new research tool for dissecting skin ageing and rejuvenation, and is well‐suited to identify novel anti‐ageing actives directly in the human target organ. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
25. Collagen Fibrillogenesis in the Mitral Valve: It's a Matter of Compliance.
- Author
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Goodwin, Richard L, Kheradvar, Arash, Norris, Russell A, Price, Robert L, and Potts, Jay D
- Subjects
collagens ,fibrillogenesis ,mitral valve - Abstract
Collagen fibers are essential structural components of mitral valve leaflets, their tension apparatus (chordae tendineae), and the associated papillary muscles. Excess or lack of collagen fibers in the extracellular matrix (ECM) in any of these structures can adversely affect mitral valve function. The organization of collagen fibers provides a sophisticated framework that allows for unidirectional blood flow during the precise opening and closing of this vital heart valve. Although numerous ECM molecules are essential for the differentiation, growth, and homeostasis of the mitral valve (e.g., elastic fibers, glycoproteins, and glycans), collagen fibers are key to mitral valve integrity. Besides the inert structural components of the tissues, collagen fibers are dynamic structures that drive outside-to-inside cell signaling, which informs valvular interstitial cells (VICs) present within the tissue environment. Diversity of collagen family members and the closely related collagen-like triple helix-containing proteins found in the mitral valve, will be discussed in addition to how defects in these proteins may lead to valve disease.
- Published
- 2021
26. Tumor restriction by type I collagen opposes tumor-promoting effects of cancer-associated fibroblasts
- Author
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Bhattacharjee, Sonakshi, Hamberger, Florian, Ravichandra, Aashreya, Miller, Maximilian, Nair, Ajay, Affo, Silvia, Filliol, Aveline, Chin, LiKang, Savage, Thomas M, Yin, Deqi, Wirsik, Naita Maren, Mehal, Adam, Arpaia, Nicholas, Seki, Ekihiro, Mack, Matthias, Zhu, Di, Sims, Peter A, Kalluri, Raghu, Stanger, Ben Z, Olive, Kenneth P, Schmidt, Thomas, Wells, Rebecca G, Mederacke, Ingmar, and Schwabe, Robert F
- Subjects
Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Immunology ,Cancer ,Digestive Diseases ,Liver Disease ,Aetiology ,2.1 Biological and endogenous factors ,Animals ,Cancer-Associated Fibroblasts ,Cell Line ,Tumor ,Collagen Type I ,Hepatic Stellate Cells ,Humans ,Liver Neoplasms ,Experimental ,Mechanotransduction ,Cellular ,Mice ,Knockout ,Neoplasm Metastasis ,Collagens ,Fibrosis ,Hepatology ,Oncology ,Medical and Health Sciences ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
Cancer-associated fibroblasts (CAF) may exert tumor-promoting and tumor-suppressive functions, but the mechanisms underlying these opposing effects remain elusive. Here, we sought to understand these potentially opposing functions by interrogating functional relationships among CAF subtypes, their mediators, desmoplasia, and tumor growth in a wide range of tumor types metastasizing to the liver, the most common organ site for metastasis. Depletion of hepatic stellate cells (HSC), which represented the main source of CAF in mice and patients in our study, or depletion of all CAF decreased tumor growth and mortality in desmoplastic colorectal and pancreatic metastasis but not in nondesmoplastic metastatic tumors. Single-cell RNA-Seq in conjunction with CellPhoneDB ligand-receptor analysis, as well as studies in immune cell-depleted and HSC-selective knockout mice, uncovered direct CAF-tumor interactions as a tumor-promoting mechanism, mediated by myofibroblastic CAF-secreted (myCAF-secreted) hyaluronan and inflammatory CAF-secreted (iCAF-secreted) HGF. These effects were opposed by myCAF-expressed type I collagen, which suppressed tumor growth by mechanically restraining tumor spread, overriding its own stiffness-induced mechanosignals. In summary, mechanical restriction by type I collagen opposes the overall tumor-promoting effects of CAF, thus providing a mechanistic explanation for their dual functions in cancer. Therapeutic targeting of tumor-promoting CAF mediators while preserving type I collagen may convert CAF from tumor promoting to tumor restricting.
- Published
- 2021
27. Levels of type XVII collagen (BP180) ectodomain are elevated in circulation from patients with multiple cancer types and is prognostic for patients with metastatic colorectal cancer.
- Author
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Crespo-Bravo, Marina, Thorlacius-Ussing, Jeppe, Nissen, Neel I., Pedersen, Rasmus S., Boisen, Mogens K., Liljefors, Maria, Johansen, Astrid Z., Johansen, Julia S., Karsdal, Morten A., and Willumsen, Nicholas
- Subjects
COLORECTAL cancer ,METASTASIS ,COLLAGEN ,CANCER patients ,MEMBRANE proteins ,HEAD & neck cancer ,BLADDER cancer - Abstract
Background: Collagens are the major components of the extracellular matrix (ECM) and are known to contribute to tumor progression and metastasis. There are 28 different types of collagens each with unique functions in maintaining tissue structure and function. Type XVII collagen (BP180) is a type II transmembrane protein that provides stable adhesion between epithelial cells and the underlying basement membrane. Aberrant expression and ectodomain shedding of type XVII collagen have been associated with epithelial damage, tumor invasiveness, and metastasis in multiple tumor types and may consequently be used as a potential (non-invasive) biomarker in cancer and treatment target. Method: An ELISA targeting the type XVII collagen ectodomain (PRO-C17) was developed for use in serum. PRO-C17 was measured in a cohort of patients with 11 different cancer types (n = 214) and compared to healthy controls (n = 23) (cohort 1). Based on the findings from cohort 1, PRO-C17 and its association with survival was explored in patients with metastatic colorectal cancer (mCRC) treated with bevacizumab in combination with chemotherapy (n = 212) (cohort 2). Results: PRO-C17 was robust and specific towards the ectodomain of type XVII collagen. In cohort 1, PRO-C17 levels were elevated (p < 0.05) in serum from patients with CRC, kidney, ovarian, bladder, breast, and head and neck cancer compared to healthy controls. PRO-C17 was especially good at discriminating between CRC patients and healthy controls with an AUROC of 0.904. In cohort 2, patients with mCRC and high levels (tertile 3) of PRO-C17 had shorter overall survival (OS) with a median OS of 390 days compared to 539 days for patients with low levels of PRO-C17. When evaluated by multivariate Cox regression analysis, high PRO-C17 was predictive for poor OS independent of risk factors and the tumor fibrosis biomarker PRO-C3. Conclusion: PRO-C17 measures the ectodomain of type XVII collagen in serum and is a promising non-invasive biomarker that can aid in understanding tumor heterogeneity as well as elaborate on the role of collagen XVII in tumor progression. Moreover, the findings in the study proposes PRO-C17 as novel biomarker of epithelial damage in specific cancer types including CRC. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
28. Age-dependent regulation of cell-mediated collagen turnover
- Author
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Podolsky, Michael J, Yang, Christopher D, Lizama, Carlos, Datta, Ritwik, Huang, Steven K, Nishimura, Stephen L, Dallas, Sarah L, Wolters, Paul, Le Saux, Claude Jourdan, and Atabai, Kamran
- Subjects
Genetics ,Aging ,2.1 Biological and endogenous factors ,Aetiology ,Underpinning research ,1.1 Normal biological development and functioning ,Animals ,Collagen ,Extracellular Matrix ,Kruppel-Like Transcription Factors ,Membrane Glycoproteins ,Mice ,Mice ,Knockout ,Proteolysis ,Receptors ,Cell Surface ,Transcription ,Genetic ,Collagens ,Extracellular matrix ,Fibrosis ,Pulmonology - Abstract
Although aging represents the most important epidemiologic risk factor for fibrotic disease, the reasons for this are incompletely understood. Excess collagen deposition in tissues is the sine qua non of tissue fibrosis and can be viewed as an imbalance between collagen production and collagen degradation. Yet we still lack a detailed understanding of the changes that take place during development, maturation, and aging in extracellular matrix (ECM) dynamics. Resolution of fibrosis is impaired in aging, and this impairment may explain why age is the most important risk factor for fibrotic diseases, such as idiopathic pulmonary fibrosis. However, ECM dynamics and impaired resolution of fibrosis in aging remain understudied. Here we show that cell-mediated collagen uptake and degradation are diminished in aged animals and this finding correlates with downregulation of the collagen endocytic receptor mannose receptor, C-type 2 (Mrc2). We identify myeloid zinc finger-1 as a potentially novel transcriptional regulator of Mrc2, and both this transcription factor and Mrc2 are downregulated in multiple tissues and organisms in an age-dependent manner. Thus, cell-mediated degradation of collagen is an essential process that promotes resolution of fibrosis, and impairment in this process contributes to age-related fibrosis.
- Published
- 2020
29. Unravelling the limb regeneration mechanisms of Polypedates maculatus, a sub-tropical frog, by transcriptomics
- Author
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Cuckoo Mahapatra, Pranati Naik, Sumanta Kumar Swain, and Pratyush Paradarsita Mohapatra
- Subjects
Myeloid cells ,Proteoglycans ,Collagens ,Methyltransferases ,In situ hybridisation ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Regeneration studies help to understand the strategies that replace a lost or damaged organ and provide insights into approaches followed in regenerative medicine and engineering. Amphibians regenerate their limbs effortlessly and are indispensable models to study limb regeneration. Xenopus and axolotl are the key models for studying limb regeneration but recent studies on non-model amphibians have revealed species specific differences in regeneration mechanisms. Results The present study describes the de novo transcriptome of intact limbs and three-day post-amputation blastemas of tadpoles and froglets of the Asian tree frog Polypedates maculatus, a non-model amphibian species commonly found in India. Differential gene expression analysis between early tadpole and froglet limb blastemas discovered species-specific novel regulators of limb regeneration. The present study reports upregulation of proteoglycans, such as epiphycan, chondroadherin, hyaluronan and proteoglycan link protein 1, collagens 2,5,6, 9 and 11, several tumour suppressors and methyltransferases in the P. maculatus tadpole blastemas. Differential gene expression analysis between tadpole and froglet limbs revealed that in addition to the expression of larval-specific haemoglobin and glycoproteins, an upregulation of cysteine and serine protease inhibitors and downregulation of serine proteases, antioxidants, collagenases and inflammatory genes in the tadpole limbs were essential for creating an environment that would support regeneration. Dermal myeloid cells were GAG+, EPYC+, INMT+, LEF1+ and SALL4+ and seemed to migrate from the unamputated regions of the tadpole limb to the blastema. On the other hand, the myeloid cells of the froglet limb blastemas were few and probably contributed to sustained inflammation resulting in healing. Conclusions Studies on non-model amphibians give insights into alternate tactics for limb regeneration which can help devise a plethora of methods in regenerative medicine and engineering.
- Published
- 2023
- Full Text
- View/download PDF
30. The Extracellular Matrix: Its Composition, Function, Remodeling, and Role in Tumorigenesis.
- Author
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Dzobo, Kevin and Dandara, Collet
- Subjects
- *
EXTRACELLULAR matrix , *NEOPLASTIC cell transformation , *FIBRONECTINS , *INTEGRINS , *MATRIX metalloproteinases - Abstract
The extracellular matrix (ECM) is a ubiquitous member of the body and is key to the maintenance of tissue and organ integrity. Initially thought to be a bystander in many cellular processes, the extracellular matrix has been shown to have diverse components that regulate and activate many cellular processes and ultimately influence cell phenotype. Importantly, the ECM's composition, architecture, and stiffness/elasticity influence cellular phenotypes. Under normal conditions and during development, the synthesized ECM constantly undergoes degradation and remodeling processes via the action of matrix proteases that maintain tissue homeostasis. In many pathological conditions including fibrosis and cancer, ECM synthesis, remodeling, and degradation is dysregulated, causing its integrity to be altered. Both physical and chemical cues from the ECM are sensed via receptors including integrins and play key roles in driving cellular proliferation and differentiation and in the progression of various diseases such as cancers. Advances in 'omics' technologies have seen an increase in studies focusing on bidirectional cell–matrix interactions, and here, we highlight the emerging knowledge on the role played by the ECM during normal development and in pathological conditions. This review summarizes current ECM-targeted therapies that can modify ECM tumors to overcome drug resistance and better cancer treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
31. Proteomic analysis of small intestinal neuroendocrine tumors and mesenteric fibrosis.
- Author
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Blažević, Anela, Iyer, Anand M., van Velthuysen, Marie-Louise F., Hofland, Johannes, Franssen, Gaston J. H., Feelders, Richard A., Zajec, Marina, Luider, Theo M., de Herder, Wouter W., and Hofland, Leo J.
- Subjects
- *
NEUROENDOCRINE tumors , *PROTEOMICS , *TUMOR proteins , *FATTY acid oxidation , *FIBROSIS , *INTESTINAL tumors , *PANCREATIC tumors - Abstract
Mesenteric metastases in small intestinal neuroendocrine tumors (SI-NETs) are associated with mesenteric fibrosis (MF) in a proportion of patients. MF can induce severe abdominal complications, and an effective preventive treatment is lacking. To elucidate possible novel therapeutic targets, we performed a proteomics-based analysis of MF. The tumor cell and stromal compartment of primary tumors and paired mesenteric metastases of SI-NET patients with MF (n = 6) and without MF (n = 6) was analyzed by liquid chromatography-mass spectrometry-based proteomics. Analysis of differential protein abundance was performed. Collagen alpha-1(XII) (COL12A1) and complement component C9 (C9) expression was evaluated by immunohistochemistry (IHC) in mesenteric metastases. A total of 2988 proteins were identified. Unsupervised hierarchical clustering showed close clustering of paired primary and mesenteric tumor cell samples. Comparing MF to non-MF samples, we detected differentially protein abundance solely in the mesenteric metastasis stroma group. There was no differential abundance of proteins in tumor cell samples or primary tumor stroma samples. Analysis of the differentially abundant proteins (n = 36) revealed higher abundance in MF samples of C9, various collagens and proteoglycans associated with profibrotic extracellular matrix dysregulation and signaling pathways. Proteins involved in fatty acid oxidation showed a lower abundance. COL12A1 and C9 were confirmed by IHC to have significantly higher expression in MF mesenteric metastases compared to non-MF. In conclusion, proteome profiles of SI-NETs with and without MF differ primarily in the stromal compartment of mesenteric metastases. Analysis of differentially abundant proteins revealed possible new signaling pathways involved in MF development. In conclusion, proteome profiles of SI-NETs with and without MF differ primarily in the stromal compartment of mesenteric metastases. Analysis of differentially abundant proteins revealed possible new signaling pathways involved in MF development. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
32. Form and function of the apical extracellular matrix: new insights from Caenorhabditis elegans, Drosophila melanogaster, and the vertebrate inner ear
- Author
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Zheng, Sherry Li, Adams, Jennifer Gotenstein, and Chisholm, Andrew D
- Subjects
Biochemistry and Cell Biology ,Biomedical and Clinical Sciences ,Genetics ,Biological Sciences ,Underpinning research ,1.1 Normal biological development and functioning ,Generic health relevance ,chitin ,collagens ,epithelia ,tubulogenesis ,zona pellucida domain - Abstract
Apical extracellular matrices (aECMs) are the extracellular layers on the apical sides of epithelia. aECMs form the outer layer of the skin in most animals and line the luminal surface of internal tubular epithelia. Compared to the more conserved basal ECMs (basement membranes), aECMs are highly diverse between tissues and between organisms and have been more challenging to understand at mechanistic levels. Studies in several genetic model organisms are revealing new insights into aECM composition, biogenesis, and function and have begun to illuminate common principles and themes of aECM organization. There is emerging evidence that, in addition to mechanical or structural roles, aECMs can participate in reciprocal signaling with associated epithelia and other cell types. Studies are also revealing mechanisms underlying the intricate nanopatterns exhibited by many aECMs. In this review, we highlight recent findings from well-studied model systems, including the external cuticle and ductal aECMs of Caenorhabditis elegans, Drosophila melanogaster, and other insects and the internal aECMs of the vertebrate inner ear.
- Published
- 2020
33. Form and function of the apical extracellular matrix: new insights from Caenorhabditis elegans, Drosophila melanogaster, and the vertebrate inner ear.
- Author
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Li Zheng, Sherry, Adams, Jennifer Gotenstein, and Chisholm, Andrew D
- Subjects
chitin ,collagens ,epithelia ,tubulogenesis ,zona pellucida domain - Abstract
Apical extracellular matrices (aECMs) are the extracellular layers on the apical sides of epithelia. aECMs form the outer layer of the skin in most animals and line the luminal surface of internal tubular epithelia. Compared to the more conserved basal ECMs (basement membranes), aECMs are highly diverse between tissues and between organisms and have been more challenging to understand at mechanistic levels. Studies in several genetic model organisms are revealing new insights into aECM composition, biogenesis, and function and have begun to illuminate common principles and themes of aECM organization. There is emerging evidence that, in addition to mechanical or structural roles, aECMs can participate in reciprocal signaling with associated epithelia and other cell types. Studies are also revealing mechanisms underlying the intricate nanopatterns exhibited by many aECMs. In this review, we highlight recent findings from well-studied model systems, including the external cuticle and ductal aECMs of Caenorhabditis elegans, Drosophila melanogaster, and other insects and the internal aECMs of the vertebrate inner ear.
- Published
- 2020
34. MiRNAs as Potential Regulators of Enthesis Healing: Findings in a Rodent Injury Model.
- Author
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Peniche Silva, Carlos Julio, De La Vega, Rodolfo E., Panos, Joseph, Joris, Virginie, Evans, Christopher H., Balmayor, Elizabeth R., and van Griensven, Martijn
- Subjects
- *
GENE expression , *MICRORNA , *NON-coding RNA , *HEALING , *RODENTS - Abstract
MicroRNAs (miRNAs) are short non-coding RNA sequences with the ability to inhibit the expression of a target mRNA at the post-transcriptional level, acting as modulators of both the degenerative and regenerative processes. Therefore, these molecules constitute a potential source of novel therapeutic tools. In this study, we investigated the miRNA expression profile that presented in enthesis tissue upon injury. For this, a rodent enthesis injury model was developed by creating a defect at a rat's patellar enthesis. Following injury, explants were collected on days 1 (n = 10) and 10 (n = 10). Contra lateral samples (n = 10) were harvested to be used for normalization. The expression of miRNAs was investigated using a "Fibrosis" pathway-focused miScript qPCR array. Later, target prediction for the aberrantly expressed miRNAs was performed by means of the Ingenuity Pathway Analysis, and the expression of mRNA targets relevant for enthesis healing was confirmed using qPCRs. Additionally, the protein expression levels of collagens I, II, III, and X were investigated using Western blotting. The mRNA expression pattern of EGR1, COL2A1, RUNX2, SMAD1, and SMAD3 in the injured samples indicated their possible regulation by their respective targeting miRNA, which included miR-16, -17, -100, -124, -133a, -155 and -182. Furthermore, the protein levels of collagens I and II were reduced directly after the injury (i.e., day 1) and increased 10 days post-injury, while collagens III and X showed the opposite pattern of expression. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
35. Unravelling the limb regeneration mechanisms of Polypedates maculatus, a sub-tropical frog, by transcriptomics.
- Author
-
Mahapatra, Cuckoo, Naik, Pranati, Swain, Sumanta Kumar, and Mohapatra, Pratyush Paradarsita
- Subjects
REGENERATION (Biology) ,CYSTEINE proteinase inhibitors ,FROGS ,SERINE proteinases ,HYLIDAE ,CHONDROITIN sulfate proteoglycan ,PROTEOGLYCANS - Abstract
Background: Regeneration studies help to understand the strategies that replace a lost or damaged organ and provide insights into approaches followed in regenerative medicine and engineering. Amphibians regenerate their limbs effortlessly and are indispensable models to study limb regeneration. Xenopus and axolotl are the key models for studying limb regeneration but recent studies on non-model amphibians have revealed species specific differences in regeneration mechanisms. Results: The present study describes the de novo transcriptome of intact limbs and three-day post-amputation blastemas of tadpoles and froglets of the Asian tree frog Polypedates maculatus, a non-model amphibian species commonly found in India. Differential gene expression analysis between early tadpole and froglet limb blastemas discovered species-specific novel regulators of limb regeneration. The present study reports upregulation of proteoglycans, such as epiphycan, chondroadherin, hyaluronan and proteoglycan link protein 1, collagens 2,5,6, 9 and 11, several tumour suppressors and methyltransferases in the P. maculatus tadpole blastemas. Differential gene expression analysis between tadpole and froglet limbs revealed that in addition to the expression of larval-specific haemoglobin and glycoproteins, an upregulation of cysteine and serine protease inhibitors and downregulation of serine proteases, antioxidants, collagenases and inflammatory genes in the tadpole limbs were essential for creating an environment that would support regeneration. Dermal myeloid cells were GAG+, EPYC+, INMT+, LEF1+ and SALL4+ and seemed to migrate from the unamputated regions of the tadpole limb to the blastema. On the other hand, the myeloid cells of the froglet limb blastemas were few and probably contributed to sustained inflammation resulting in healing. Conclusions: Studies on non-model amphibians give insights into alternate tactics for limb regeneration which can help devise a plethora of methods in regenerative medicine and engineering. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
36. Nondestructive fluorescence lifetime imaging and time-resolved fluorescence spectroscopy detect cartilage matrix depletion and correlate with mechanical properties.
- Author
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Haudenschild, AK, Sherlock, BE, Zhou, X, Hu, JC, Leach, JK, Marcu, L, and Athanasiou, KA
- Subjects
Cartilage ,Articular ,Extracellular Matrix ,Animals ,Cattle ,Collagen ,Collagenases ,Proteoglycans ,Spectrometry ,Fluorescence ,Viscosity ,Compressive Strength ,Fluorescence ,Freezing ,Time Factors ,Elastic Modulus ,Biomechanical Phenomena ,Cartilage ,biomechanics ,extracellular matrix ,collagens ,proteoglycans ,imaging ,cartilage repair and regeneration ,tissue engineering ,regenerative medicine ,Bioengineering ,Musculoskeletal ,Articular ,Spectrometry ,Biomedical Engineering ,Biochemistry and Cell Biology - Abstract
Tissue engineers utilize a battery of expensive, time-consuming and destructive techniques to assess the composition and function of engineered tissues. A nondestructive solution to monitor tissue maturation would reduce costs and accelerate product development. As a first step toward this goal, two nondestructive, label-free optical techniques, namely multispectral fluorescent lifetime imaging (FLIm) and time-resolved fluorescence spectroscopy (TRFS), were investigated for their potential in evaluating the biochemical and mechanical properties of articular cartilage. Enzymatic treatments were utilized to selectively deplete cartilage of either collagen or proteoglycan, to produce a range of matrix compositions. Samples were assessed for their optical properties using a fiber-coupled optical system combining FLIm and TRFS, their biochemical and mechanical properties and by histological staining. Single and multivariable correlations were performed to evaluate relationships among these properties. FLIm- and TRFS-derived measurements are sensitive to changes in cartilage matrix and correlate with mechanical and biochemical assays. Mean fluorescence lifetime values extracted from FLIm images (375-410 nm spectral band) showed strong, specific correlations with collagen content (R2 = 0.79, p < 0.001) and tensile properties (R2 = 0.45, p = 0.02). TRFS lifetime measurements centered at 520 nm (with a 5 nm bandwidth) possessed strong, specific correlations with proteoglycan content (R2 = 0.59, p = 0.001) and compressive properties (R2 = 0.71, p < 0.001). Nondestructive optical assessment of articular cartilage, using a combination of FLIm- and TRFS-derived parameters, provided a quantitative method for determining tissue biochemical composition and mechanical function. These tools hold great potential for research, industrial and clinical settings.
- Published
- 2018
37. Type XXII Collagen Complements Fibrillar Collagens in the Serological Assessment of Tumor Fibrosis and the Outcome in Pancreatic Cancer.
- Author
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Madsen, Emilie A., Thorlacius-Ussing, Jeppe, Nissen, Neel I., Jensen, Christina, Chen, Inna M., Johansen, Julia S., Diab, Hadi M. H., Jørgensen, Lars N., Hansen, Carsten P., Karsdal, Morten A., and Willumsen, Nicholas
- Subjects
- *
CYSTIC fibrosis , *PANCREATIC cancer , *COLLAGEN , *CANCER prognosis , *PANCREATIC duct , *CIRCULATING tumor DNA - Abstract
Circulating fragments of type III collagen, measured by PRO-C3, has shown promising results as a tumor fibrosis biomarker. However, the fibrotic tumor microenvironment consists of many other collagens with diverse functions and unexplored biomarker potential. One example hereof is type XXII collagen (COL22). In this study, we investigated the biomarker potential of COL22 by measuring this in serum. An ELISA, named PRO-C22, was developed and measured in two serum cohorts consisting of patients with various solid tumors (n = 220) and healthy subjects (n = 33) (Cohort 1), and patients with pancreatic ductal adenocarcinoma (PDAC) (n = 34), and healthy subjects (n = 20) (Cohort 2). In Cohort 1, PRO-C22 was elevated in the serum from patients with solid tumors, compared to healthy subjects (p < 0.01 to p < 0.0001), and the diagnostic accuracy (AUROC) ranged from 0.87 to 0.98, p < 0.0001. In Cohort 2, the high levels of PRO-C22, in patients with PDAC, were predictive of a worse overall survival (HR = 4.52, 95% CI 1.90–10.7, p = 0.0006) and this remained significant after adjusting for PRO-C3 (HR = 4.27, 95% CI 1.24–10.4, p = 0.0013). In conclusion, PRO-C22 has diagnostic biomarker potential in various solid tumor types and prognostic biomarker potential in PDAC. Furthermore, PRO-C22 complemented PRO-C3 in predicting mortality, suggesting an additive prognostic value when quantifying different collagens. [ABSTRACT FROM AUTHOR]
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- 2022
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38. Molecular Characterization and Virus-Induced Gene Silencing of a Collagen Gene, Me-col-1 , in Root-Knot Nematode Meloidogyne enterolobii.
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Pei, Ji, Feng, Tuizi, Long, Haibo, Chen, Yuan, Pei, Yueling, and Sun, Yanfang
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GENE silencing , *ROOT-knot , *ROOT-knot nematodes , *LIFE cycles (Biology) , *AGRICULTURAL productivity , *COLLAGEN - Abstract
Meloidogyne enterolobii, a highly pathogenic root-knot nematode species, causes serious damage to agricultural production worldwide. Collagen is an important part of the nematode epidermis, which is crucial for nematode shape maintenance, motility, and reproduction. In this study, we report that a novel collagen gene, Me-col-1, from the highly pathogenic root-knot nematode species Meloidogyne enterolobi was required for the egg formation of this pathogen. Me-col-1 encodes a protein with the size of 35 kDa, which is closely related to collagen found in other nematodes. Real-time PCR assays showed that the expression of Me-col-1 was highest in eggs and lowest in pre-parasitic second-stage juveniles (preJ2). Interestingly, knockdown of Me-col-1 did not compromise the survival rate of preJ2 but significantly reduced the egg production and consequentially caused 35.79% lower multiplication rate (Pf/Pi) compared with control. Our study provides valuable information for better understanding the function of collagen genes in the nematode life cycle, which can be used in the development of effective approaches for nematode control. [ABSTRACT FROM AUTHOR]
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- 2022
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39. Biochemistry of Non-collagenous Proteins of Bone
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Gorski, Jeffrey P., Karamanos, Nikos K., Series Editor, Kletsas, Dimitris, Editorial Board Member, Oh, Eok-Soo, Editorial Board Member, Passi, Alberto, Editorial Board Member, Pihlajaniemi, Taina, Editorial Board Member, Ricard-Blum, Sylvie, Editorial Board Member, Sagi, Irit, Editorial Board Member, Savani, Rashmin, Editorial Board Member, Watanabe, Hideto, Editorial Board Member, Goldberg, Michel, editor, and Den Besten, Pamela, editor
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- 2021
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40. Cementum Proteins Beyond Cementum
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Arzate, Higinio, Zeichner-David, Margarita, Karamanos, Nikos K., Series Editor, Kletsas, Dimitris, Editorial Board Member, Oh, Eok-Soo, Editorial Board Member, Passi, Alberto, Editorial Board Member, Pihlajaniemi, Taina, Editorial Board Member, Ricard-Blum, Sylvie, Editorial Board Member, Sagi, Irit, Editorial Board Member, Savani, Rashmin, Editorial Board Member, Watanabe, Hideto, Editorial Board Member, Goldberg, Michel, editor, and Den Besten, Pamela, editor
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- 2021
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41. Structure of Collagen-Derived Mineralized Tissues (Dentin, Cementum, and Bone) and Non-collagenous Extra Cellular Matrix of Enamel
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Nakano, Yukiko, DenBesten, Pamela, Goldberg, Michel, Karamanos, Nikos K., Series Editor, Kletsas, Dimitris, Editorial Board Member, Oh, Eok-Soo, Editorial Board Member, Passi, Alberto, Editorial Board Member, Pihlajaniemi, Taina, Editorial Board Member, Ricard-Blum, Sylvie, Editorial Board Member, Sagi, Irit, Editorial Board Member, Savani, Rashmin, Editorial Board Member, Watanabe, Hideto, Editorial Board Member, Goldberg, Michel, editor, and Den Besten, Pamela, editor
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- 2021
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42. The administration of exogenous HSP47 as a collagen specific therapeutic approach.
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Besio R, Garibaldi N, Sala A, Tonelli F, Aresi C, Maffioli E, Casali C, Torriani C, Biggiogera M, Villani S, Rossi A, Tedeschi G, and Forlino A
- Abstract
The proof-of-principle of the therapeutic potential of heat shock protein 47 (HSP47) for diseases characterized by defects in the collagen I synthesis is here proved in osteogenesis imperfecta (OI), a prototype of collagen disorders. Most of the OI mutations delay collagen I chains folding, increasing their exposure to post translational modifications that affect collagen secretion and impact extracellular matrix fibrils assembly. As model, we used primary fibroblasts from OI individuals with defect in the collagen prolyl-3-hydroxylation complex, since are characterized by the synthesis of homogeneously overmodified collagen molecules. We demonstrated that the exogenous recombinant HSP47 (rHSP47) is uptaken by the cells and localizes at the ER exit sites and ER Golgi intermediate compartment. rHSP47 treatment increased collagen secretion, reduced collagen post translational modifications and intracellular collagen retention and ameliorated the general ER proteostasis, leading to improved cellular homeostasis and vitality. These positive changes were also mirrored by an increased collagen content in the OI matrix. A mutation dependent effect was found in fibroblasts from three probands with collagen I mutations, for which rHSP47 was effective only in cells with the most N-term defect. A beneficial effect on bone mineralization was proved in vivo in the zebrafish p3h1-/- OI model.
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- 2025
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43. PKM2-mediated collagen XVII expression is critical for wound repair.
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Liu Y, Ho CK, Wen D, Sun J, Liu Y, Li QF, Zhang Y, and Gao Y
- Abstract
Chronic wounds have emerged as a tough clinical challenge. An improved understanding of wound healing mechanisms is paramount. Collagen XVII (COL17), a pivotal constituent of hemidesmosomes, holds considerable promise for regulating epidermal cell adhesion to the basement membrane, as well as for epidermal cell motility and self-renewal of epidermal stem cells. However, the precise role of COL17 in wound repair remains elusive, and the upstream regulatory mechanisms involved have not been fully elucidated. In this study, we delineated the temporal and spatial expression patterns of COL17 at the epidermal wound edge. Subsequently, we investigated the indispensable role of COL17 in keratinocyte activation and re-epithelialization during wound healing, demonstrating the restoration of the normal repair process by COL17 overexpression in diabetic wounds. Notably, we identified a key transcriptional signaling pathway for COL17, wherein PKM2 (Pyruvate kinase isozyme M2) promotes phosphorylation of STAT3, leading to its activation and subsequent induction of COL17 expression upon injury. Ultimately, by manipulating this pathway using the PKM2 nuclear translocator SAICAR, we revealed a promising therapeutic strategy for enhancing the healing of chronic wounds.
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- 2025
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44. Map2k6 is a potent genetic modifier of arterial rupture in vascular Ehlers-Danlos syndrome mice.
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Bowen CJ, Sorber R, Calderon Giadrosic JF, Doyle JJ, Rykiel G, Burger Z, Zhang X, Espinoza Camejo WA, Anderson NK, Sabnis S, Bellini C, MacFarlane E, and Dietz HC
- Abstract
Aortic dissection or rupture is a major cause of mortality in vascular Ehlers-Danlos Syndrome (vEDS), a connective tissue disorder caused by heterozygous mutations in the COL3A1 gene. C57BL6/J (BL6) mice carrying the Col3a1 G938D/+ mutation recapitulate the vEDS vascular phenotype and die suddenly of aortic rupture/dissection. However, 129S6/SvEvTac (129) mice expressing the same Col3a1 G938D/+ mutation show near-complete life-long protection from vascular rupture. To identify genetic modifiers of vascular risk in vEDS, we performed genome-wide genotyping of intercrossed BL6/129 vEDS mice stratified by survival and identified a significant protective locus encompassing a variant in Map2k6, encoding Mitogen-Activated Protein Kinase Kinase 6 (M2K6), a p38-activating kinase. Genetic ablation of Map2k6 rendered previously protected 129 vEDS mice susceptible to aortic rupture, in association with reduced protein phosphatase 1 activity and increased PKC and ERK phosphorylation. Accelerated vascular rupture in vEDS mice treated with a pharmacological inhibitor of p38 was rescued by concomitant ERK antagonism, supporting an opposing role for ERK and p38 in the modification of aortic rupture risk in vEDS. These results suggest that pharmacologic strategies aimed at mimicking the effect of this natural protective pathway may improve prevention of aortic rupture risk in vEDS.
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- 2025
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45. Tissue fibrosis in cardiorenal syndrome: crosstalk between heart and kidneys.
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Dutta A, Chakraborty S, Roy A, Mittal A, and Basak T
- Abstract
Cardiorenal syndrome (CRS) is represented as an intricate dysfunctional interplay between the heart and kidneys, marked by cardiorenal inflammation and fibrosis. Unlike other organs, the repair process in cardiorenal injury involves a regenerative phase characterized by proliferation and polyploidization, followed by a subsequent pathogenic phase of fibrosis. In CRS, acute or chronic cardiorenal injury leads to hyperactive inflammation and fibrotic remodeling, associated with injury-mediated immune cell (Macrophages, Monocytes, and T-cells) infiltration and myofibroblast activation. An inflammatory to fibrotic transition corresponds with macrophage transition (M1-M2) associated with increased TGF-β response. Chronic inflammation disrupts hemodynamic pathways, leading to imbalanced oxidative stress and the production of cytokines and growth factors that promote fibrotic stimulation, contributing to pathological cardiorenal remodeling. The inflammatory response paves the pre-fibrotic cardiorenal niche and drives subsequent fibrotic remodeling by activated myofibroblasts. A fibrotic cardiorenal response in CRS is characterized by increased and degradation-resistant deposition of extracellular proteins especially fibrillar Collagen -I, -III, -V, and non-fibrillar Collagen-IV by active myofibroblasts. Recent advances in basic research animal models of CRS have advanced the knowledge of cardiorenal fibrosis. However, a significant need for clinical applications, trials, and evaluation is still needed. Circulating biomarkers like procollagen peptides and TGF-β have clinically been associated with cardiorenal fibrosis diagnosis in CRS. Treatments targeting the fibrotic pathways have also shown efficacy in amelioration of cardiorenal fibrosis in preclinical models. Recent combination therapies targeting multiple fibrotic pathways have been shown to offer promising results. Understanding the heterogenic pathological progression and fibrogenesis could identify novel therapeutic approaches for clinical CRS diagnosis and treatment., (© The Author(s) 2025. Published by Oxford University Press on behalf of the ERA.)
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- 2025
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46. The role of collagens in glioma: A narrative review
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Yi Wang, Toshiya Ichinose, and Mitsutoshi Nakada
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collagen receptor ,collagen remodeling ,collagens ,extracellular matrix ,glioma ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Glioma is the most common brain tumor in the central nervous system and characterized by diffuse invasion into adjacent brain tissue. The extracellular matrix (ECM) is an essential component of the tumor microenvironment and it contributes to tumor progression through close interactions with glioma cells. Accumulated evidence has indicated that collagen levels, which are the most critical components of the ECM, are elevated in gliomas and collagen contributes to glioma progression. In this review, we provide a comprehensive summary of the roles of various collagens in glioma. A better understanding of the interactions of various collagens with glioma cells may provide new therapeutic strategies for gliomas.
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- 2022
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47. In Silico Analysis of Collagens Missense SNPs and Human Abnormalities.
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Kalmari, Amin, Heydari, Mohammadkazem, Hosseinzadeh Colagar, Abasalt, and Arash, Valiollah
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HUMAN abnormalities , *MISSENSE mutation , *SINGLE nucleotide polymorphisms , *COLLAGEN , *DISCOIDIN domain receptor 1 , *PROTEIN analysis - Abstract
Collagens are the most abundant proteins in the extra cellular matrix/ECM of human tissues that are encoded by different genes. There are single nucleotide polymorphisms/SNPs which are considered as the most useful biomarkers for some disease diagnosis or prognosis. The aim of this study is screening and identifying the functional missense SNPs of human ECM-collagens and investigating their correlation with human abnormalities. All of the missense SNPs were retrieved from the NCBI SNP database and screened for a global frequency of more than 0.1. Seventy missense SNPs that met the screening criteria were characterized for functional and stability impact using six and three protein analysis tools, respectively. Next, HOPE and geneMANIA analysis tools were used to show the effect of SNPs on three-dimensional structure (3D) and physical interaction of proteins. Results showed that 13 missense SNPs (rs2070739, rs28381984, rs13424243, rs1800517, rs73868680, rs12488457, rs1353613, rs59021909, rs9830253, rs2228547, rs3753841, rs2855430, and rs970547), which are in nine different collagen genes, affect the structure and function of different collagen proteins. Among these polymorphisms, COL4A3-rs13424243 and COL6A6-rs59021909 were predicted as the most effective ones. On the other hand, designed mutated and native 3D of rs13424243 variant illustrated that it can disturb the protein motifs. Also, geneMANIA predicted that COL4A3 and COL6A6 are interacting with some proteins including: DDR1, COL6A1, COL11A2 and so on. Based on our findings, ECM-collagens functional SNPs are important and may be considered as a risk factor or molecular marker for human disorders in the future studies. [ABSTRACT FROM AUTHOR]
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- 2022
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48. Chemotherapy treatment induces pro-invasive changes in liver ECM composition.
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Guarin, Justinne R., Fatherree, Jackson P., and Oudin, Madeleine J.
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BREAST , *METASTATIC breast cancer , *CANCER chemotherapy , *LIVER , *CANCER cells , *EXTRACELLULAR matrix , *TUMOR proteins , *LIVER analysis - Abstract
• Whole tissue decellularization isolates liver and lung ECM as a scaffold. • Chemotherapy treatment alters liver ECM in a drug specific manner. • Liver dECM isolated from paclitaxel-treated mice promotes cancer cell invasion. • Collagen v is more abundant in paclitaxel-treated livers. • Collagen v drives invasion via ECM organization and signaling through α1β1 integrin. Metastasis accounts for 90% of cancer-related deaths, yet the mechanisms by which cancer cells colonize secondary organs remain poorly understood. For breast cancer patients, metastasis to the liver is associated with poor prognosis and a median survival of 6 months. Standard of care is chemotherapy, but recurrence occurs in 30% of patients. Systemic chemotherapy has been shown to induce hepatotoxicity and fibrosis, but how chemotherapy impacts the composition of the liver extracellular matrix (ECM) remains unknown. Individual ECM proteins drive tumor cell proliferation and invasion, features that are essential for metastatic outgrowth in the liver. First, we find that the ECM of livers isolated from chemotherapy-treated MMTV-PyMT mice increases the invasion, but not proliferation, of metastatic breast cancer cells. Proteomic analysis of the liver ECM identified Collagen V to be more abundant in paclitaxel-treated livers. We show that Collagen V increases cancer cell invasion via α1β1 integrins and MAPK signaling, while also increasing the alignment of Collagen I, which has been associated with increased invasion. Treatment with obtustatin, an inhibitor specific to α1β1 integrins, inhibits tumor cell invasion in decellularized ECM from paclitaxel-treated livers. Overall, we show chemotherapy treatment alters the liver microenvironment, priming it as a pro-metastatic niche for cancer metastasis. [ABSTRACT FROM AUTHOR]
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- 2022
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49. Sheep condyle model evaluation of bone marrow cell concentrate combined with a scaffold for repair of large osteochondral defects
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Maryam Tamaddon, Gordon Blunn, Wei Xu, Maria Elena Alemán Domínguez, Mario Monzón, James Donaldson, John Skinner, Timothy R. Arnett, Ling Wang, and Chaozong Liu
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bone marrow concentrate ,osteochondral scaffold ,minimally manipulated cells ,osteochondral defects ,sheep ,condyles ,cartilage ,bone marrow ,collagens ,force-plate ,tissue regeneration ,alcian blue ,sulphated glycosaminoglycans ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Aims: Minimally manipulated cells, such as autologous bone marrow concentrates (BMC), have been investigated in orthopaedics as both a primary therapeutic and augmentation to existing restoration procedures. However, the efficacy of BMC in combination with tissue engineering is still unclear. In this study, we aimed to determine whether the addition of BMC to an osteochondral scaffold is safe and can improve the repair of large osteochondral defects when compared to the scaffold alone. Methods: The ovine femoral condyle model was used. Bone marrow was aspirated, concentrated, and used intraoperatively with a collagen/hydroxyapatite scaffold to fill the osteochondral defects (n = 6). Tissue regeneration was then assessed versus the scaffold-only group (n = 6). Histological staining of cartilage with alcian blue and safranin-O, changes in chondrogenic gene expression, microCT, peripheral quantitative CT (pQCT), and force-plate gait analyses were performed. Lymph nodes and blood were analyzed for safety. Results: The results six months postoperatively showed that there were no significant differences in bone regrowth and mineral density between BMC-treated animals and controls. A significant upregulation of messenger RNA (mRNA) for types I and II collagens in the BMC group was observed, but there were no differences in the formation of hyaline-like cartilage between the groups. A trend towards reduced sulphated glycosaminoglycans (sGAG) breakdown was detected in the BMC group but this was not statistically significant. Functional weightbearing was not affected by the inclusion of BMC. Conclusion: Our results indicated that the addition of BMC to scaffold is safe and has some potentially beneficial effects on osteochondral-tissue regeneration, but not on the functional endpoint of orthopaedic interest.
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- 2021
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50. Comprehensive analysis of pathological changes in hip joint capsule of patients with developmental dysplasia of the hip
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Chuan Li, Zhi Peng, You Zhou, Yongyue Su, Pengfei Bu, Xuhan Meng, Bo Li, and Yongqing Xu
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developmental dysplasia of the hip ,high-throughput sequencing ,extracellular matrix ,joint capsules ,developmental dysplasia of the hip (ddh) ,fibroblasts ,collagens ,cell cycle ,alpha smooth muscle actin ,myofibroblasts ,western blotting ,mmp13 ,collagen fibres ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Aims: Developmental dysplasia of the hip (DDH) is a complex musculoskeletal disease that occurs mostly in children. This study aimed to investigate the molecular changes in the hip joint capsule of patients with DDH. Methods: High-throughput sequencing was used to identify genes that were differentially expressed in hip joint capsules between healthy controls and DDH patients. Biological assays including cell cycle, viability, apoptosis, immunofluorescence, reverse transcription polymerase chain reaction (RT-PCR), and western blotting were performed to determine the roles of the differentially expressed genes in DDH pathology. Results: More than 1,000 genes were differentially expressed in hip joint capsules between healthy controls and DDH. Both gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses revealed that extracellular matrix (ECM) modifications, muscle system processes, and cell proliferation were markedly influenced by the differentially expressed genes. Expression of Collagen Type I Alpha 1 Chain (COL1A1), COL3A1, matrix metalloproteinase-1 (MMP1), MMP3, MMP9, and MMP13 was downregulated in DDH, with the loss of collagen fibres in the joint capsule. Expression of transforming growth factor beta 1 (TGF-β1) was downregulated, while that of TGF-β2, Mothers against decapentaplegic homolog 3 (SMAD3), and WNT11 were upregulated in DDH, and alpha smooth muscle actin (αSMA), a key myofibroblast marker, showed marginal increase. In vitro studies showed that fibroblast proliferation was suppressed in DDH, which was associated with cell cycle arrest in G0/G1 and G2/M phases. Cell cycle regulators including Cyclin B1 (CCNB1), Cyclin E2 (CCNE2), Cyclin A2 (CCNA2), Cyclin-dependent kinase 1 (CDK1), E2F1, cell division cycle 6 (CDC6), and CDC7 were downregulated in DDH. Conclusion: DDH is associated with the loss of collagen fibres and fibroblasts, which may cause loose joint capsule formation. However, the degree of differentiation of fibroblasts to myofibroblasts needs further study. Cite this article: Bone Joint Res 2021;10(9):558–570.
- Published
- 2021
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