1. Insights into the mechanism of crotamine and potential targets involved in obesity-related metabolic pathways.
- Author
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Melendez-Martinez D, Morales-Martinez A, Sierra-Valdez F, Cossío-Ramírez R, Lozano O, Mayolo-Deloisa K, Rito-Palomares M, and Benavides J
- Subjects
- Animals, Humans, Glucagon-Like Peptide-1 Receptor metabolism, Glucagon-Like Peptide-1 Receptor chemistry, Dipeptidyl Peptidase 4 metabolism, Dipeptidyl Peptidase 4 chemistry, Metabolic Networks and Pathways, alpha-Glucosidases metabolism, alpha-Glucosidases chemistry, Molecular Docking Simulation, Obesity metabolism, Obesity drug therapy, Crotalid Venoms chemistry, Crotalid Venoms metabolism, Molecular Dynamics Simulation
- Abstract
Crotamine (Ctm) is a peptide isolated from Crotalus durissus terrificus venom. This molecule has been demonstrated to diminish body weight gain and enhance browning in adipose tissue, glucose tolerance, and insulin sensitivity; hence, it has been postulated as an anti-obesogenic peptide. However, the mechanism to elicit the anti-obesogenic effects has yet to be elucidated. Thus, we investigated the possible interaction of Ctm with receptors involved in obesity-related metabolic pathways through protein-protein docking and molecular dynamics refinement. To test the anti-obesogenic mechanism of Ctm, we selected and retrieved 18 targets involved in obesity-related drug discovery from Protein Data Bank. Then, we performed protein-protein dockings. The best three Ctm-target models were selected and refined by molecular dynamics simulations. Molecular docking demonstrated that Ctm was able to interact with 13 of the 18 targets tested. Having a better docking score with glucagon-like peptide-1 receptor (GLP-1R) (-1430.2 kcal/mol), DPP-IV (dipeptidyl peptidase-IV) (-1781.7 kcal/mol) and α-glucosidase (-1232.3 kcal/mol). These three models were refined by molecular dynamics. Ctm demonstrated a higher affinity for GLP-1R (ΔG: -41.886 ± 2.289 kcal/mol). However, Ctm interaction was more stable with DPP-IV (RMSD: 0.360 ± 0.015 nm, Radius of gyration: 2.781 ± 0.009 nm). Moreover, the number of interactions and the molecular mechanics energies of Ctm residues suggest that the interaction of Ctm with these receptors is mainly mediated by basic-hydrophobic dyads Y1-K2, W31-R32, and W33-R34. Together, all these results allow elucidating a possible molecular mechanism behind the previously described anti-obesogenic effects., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper. The original contributions presented in the study are included in the article/supplementary material. Further inquiries can be directed to the corresponding author., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
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