485 results on '"Croucher, Nicholas"'
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2. Rapid expansion and international spread of M1UK in the post-pandemic UK upsurge of Streptococcus pyogenes
3. Klebsiella pneumoniae peptide hijacks a Streptococcus pneumoniae permease to subvert pneumococcal growth and colonization
4. Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci
5. Modulation of multidrug-resistant clone success in Escherichia coli populations: a longitudinal, multi-country, genomic and antibiotic usage cohort study
6. Pneumococcal within-host diversity during colonization, transmission and treatment
7. Detecting co-selection through excess linkage disequilibrium in bacterial genomes
8. Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA
9. Seamless, rapid and accurate analyses of outbreak genomic data using Split K-mer Analysis (SKA)
10. Estimating Between Country Migration in Pneumococcal Populations
11. Immune interface interference vaccines: An evolution‐informed approach to anti‐bacterial vaccine design
12. Rapid expansion and international spread of M1UK in the post-pandemic upsurge of Streptococcus pyogenes infections in United Kingdom
13. Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures
14. Designing ecologically optimized pneumococcal vaccines using population genomics
15. Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study
16. Impact of 13-Valent Pneumococcal Conjugate Vaccination on Streptococcus pneumoniae Carriage in Young Children in Massachusetts
17. Diverse regulatory pathways modulate bet hedging of competence induction in epigenetically-differentiated phase variants of Streptococcus pneumoniae
18. Detecting co-selection through excess linkage disequilibrium in bacterial genomes
19. Functional and evolutionary analyses of pneumococcal genome variation
20. Divergent serotype replacement trends and increasing diversity in pneumococcal disease in high income settings reduce the benefit of expanding vaccine valency
21. Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage
22. Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening
23. Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
24. Frequency-dependent selection in vaccine-associated pneumococcal population dynamics
25. Pneumococcal capsule expression is controlled through a conserved, distal cis-regulatory element during infection
26. Accurate and fast graph-based pangenome annotation and clustering with ggCaller
27. Β-Lactam Antibiotic Use Modulates Multi-Drug Resistant Clone Success in Escherichia Coli Populations: A Longitudinal Multi-Country Genomic Cohort Study
28. Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis
29. Epidemiological dynamics of bacteriocin competition and antibiotic resistance
30. Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study
31. Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA
32. Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination
33. Nitrofurantoin-resistant Escherichia coli in the UK: genetic determinants, diversity, and undetected occurrences
34. Targeted control of pneumolysin production by a mobile genetic element in Streptococcus pneumoniae
35. Bacterial genomes in epidemiology—present and future
36. Pneumococcal Capsular Switching: A Historical Perspective
37. Supporting text and figures from Epidemiological dynamics of bacteriocin competition and antibiotic resistance
38. Diverse regulatory pathways modulate “bet hedging” of competence induction in epigenetically-differentiated phase variants ofStreptococcus pneumoniae
39. Pneumococcal within-host diversity during colonisation, transmission and treatment
40. Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
41. International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European shipyard outbreaks of invasive pneumococcal disease
42. Genome-wide association, prediction and heritability in bacteria with application toStreptococcus pneumoniae
43. Rapid Pneumococcal Evolution in Response to Clinical Interventions
44. Alterations in chromosomal genes nfsA, nfsB, and ribE are associated with nitrofurantoin resistance in Escherichia coli from the United Kingdom
45. RCandy: an R package for visualizing homologous recombinations in bacterial genomes
46. Genome-wide association, prediction and heritability in bacteria
47. Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
48. Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study
49. Accurate and fast graph-based pangenome annotation and clustering with ggCaller
50. Diverse Genetic Determinants of Nitrofurantoin Resistance in UK Escherichia coli
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