487 results on '"Croucher, Nicholas J"'
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2. Rapid expansion and international spread of M1UK in the post-pandemic UK upsurge of Streptococcus pyogenes
3. Klebsiella pneumoniae peptide hijacks a Streptococcus pneumoniae permease to subvert pneumococcal growth and colonization
4. Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci
5. Modulation of multidrug-resistant clone success in Escherichia coli populations: a longitudinal, multi-country, genomic and antibiotic usage cohort study
6. Pneumococcal within-host diversity during colonization, transmission and treatment
7. Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA
8. Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study
9. Naturally acquired adaptive immunity to Streptococcus pneumoniae is impaired in rheumatoid arthritis patients.
10. Detecting co-selection through excess linkage disequilibrium in bacterial genomes
11. Seamless, rapid and accurate analyses of outbreak genomic data using Split K-mer Analysis (SKA)
12. Estimating Between Country Migration in Pneumococcal Populations
13. Immune interface interference vaccines: An evolution‐informed approach to anti‐bacterial vaccine design
14. Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures
15. Detecting co-selection through excess linkage disequilibrium in bacterial genomes
16. AmiA and AliA peptide ligands, found in Klebsiella pneumoniae, are imported into pneumococci and alter the transcriptome
17. Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
18. Designing ecologically optimized pneumococcal vaccines using population genomics
19. International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact
20. The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease
21. Impact of 13-Valent Pneumococcal Conjugate Vaccination on Streptococcus pneumoniae Carriage in Young Children in Massachusetts
22. Diverse regulatory pathways modulate bet hedging of competence induction in epigenetically-differentiated phase variants of Streptococcus pneumoniae
23. Divergent serotype replacement trends and increasing diversity in pneumococcal disease in high income settings reduce the benefit of expanding vaccine valency
24. Detecting co-selection through excess linkage disequilibrium in bacterial genomes
25. Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage
26. Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening
27. Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis
28. Frequency-dependent selection in vaccine-associated pneumococcal population dynamics
29. The application of genomics to tracing bacterial pathogen transmission
30. Pneumococcal capsule expression is controlled through a conserved, distal cis-regulatory element during infection
31. Accurate and fast graph-based pangenome annotation and clustering with ggCaller
32. Β-Lactam Antibiotic Use Modulates Multi-Drug Resistant Clone Success in Escherichia Coli Populations: A Longitudinal Multi-Country Genomic Cohort Study
33. Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis
34. Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
35. Epidemiological dynamics of bacteriocin competition and antibiotic resistance
36. Post-vaccine epidemiology of serotype 3 pneumococci identifies transformation inhibition through prophage-driven alteration of a non-coding RNA
37. Bacterial genomes in epidemiology—present and future
38. Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination
39. Pneumococcal Capsular Switching: A Historical Perspective
40. Rapid Pneumococcal Evolution in Response to Clinical Interventions
41. Targeted control of pneumolysin production by a mobile genetic element in Streptococcus pneumoniae
42. Diverse regulatory pathways modulate “bet hedging” of competence induction in epigenetically-differentiated phase variants ofStreptococcus pneumoniae
43. Supporting text and figures from Epidemiological dynamics of bacteriocin competition and antibiotic resistance
44. Studying bacterial transcriptomes using RNA-seq
45. Pneumococcal within-host diversity during colonisation, transmission and treatment
46. Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates
47. International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European shipyard outbreaks of invasive pneumococcal disease
48. Genome-wide association, prediction and heritability in bacteria with application toStreptococcus pneumoniae
49. Alterations in chromosomal genes nfsA, nfsB, and ribE are associated with nitrofurantoin resistance in Escherichia coli from the United Kingdom
50. RCandy: an R package for visualizing homologous recombinations in bacterial genomes
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