143 results on '"Cutler, D. J."'
Search Results
2. Rare coding variation provides insight into the genetic architecture and phenotypic context of autism
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J. M., Fu, Satterstrom, F. K., Peng, M., Brand, H., Collins, R. L., Dong, S., Wamsley, B., Klei, L., Wang, L., Hao, S. P., Stevens, C. R., Cusick, C., Babadi, M., Banks, E., Collins, B., Dodge, S., Gabriel, S. B., Gauthier, L., Lee, S. K., Liang, L., Ljungdahl, A., Mahjani, B., Sloofman, L., Smirnov, A. N., Barbosa, M., Betancur, C., Brusco, A., Chung, B. H. Y., Cook, E. H., Cuccaro, M. L., Domenici, E., Ferrero, G. B., Gargus, J. J., Herman, G. E., Hertz-Picciotto, I., Maciel, P., Manoach, D. S., Passos-Bueno, M. R., Persico, A., Renieri, A., Sutcliffe, J. S., Tassone, F., Trabetti, E., Campos, G., Cardaropoli, S., Carli, D., Chan, M. C. Y., Fallerini, C., Giorgio, E., Girardi, A. C., Hansen-Kiss, E., Lee, S. L., Lintas, C., Ludena, Y., Nguyen, R., Pavinato, L., Pericak-Vance, M., Pessah, I. N., Schmidt, R. J., Smith, M., Costa, C. I. S., Trajkova, S., Wang, J. Y. T., M. H. C., Yu, Aleksic, B., Artomov, M., Benetti, E., Biscaldi-Schafer, M., Borglum, A. D., Carracedo, A., Chiocchetti, A. G., Coon, H., Doan, R. N., Fernandez-Prieto, M., Freitag, C. M., Gerges, S., Guter, S., Hougaard, D. M., Hultman, C. M., Jacob, S., Kaartinen, M., Kolevzon, A., Kushima, I., Lehtimaki, T., Rizzo, C. L., Maltman, N., Manara, M., Meiri, G., Menashe, I., Miller, J., Minshew, N., Mosconi, M., Ozaki, N., Palotie, A., Parellada, M., Puura, K., Reichenberg, A., Sandin, S., Scherer, S. W., Schlitt, S., Schmitt, L., Schneider-Momm, K., Siper, P. M., Suren, P., Sweeney, J. A., Teufel, K., del Pilar Trelles, M., Weiss, L. A., Yuen, R., Cutler, D. J., De Rubeis, S., Buxbaum, J. D., Daly, M. J., Devlin, B., Roeder, K., Sanders, S. J., Talkowski, M. E., Massachusetts General Hospital [Boston], Broad Institute of MIT and Harvard (BROAD INSTITUTE), Harvard Medical School [Boston] (HMS)-Massachusetts Institute of Technology (MIT)-Massachusetts General Hospital [Boston], Carnegie Mellon University [Pittsburgh] (CMU), Harvard Medical School [Boston] (HMS), University of California [San Francisco] (UC San Francisco), University of California (UC), University of California [Los Angeles] (UCLA), University of Pittsburgh School of Medicine, Pennsylvania Commonwealth System of Higher Education (PCSHE), Icahn School of Medicine at Mount Sinai [New York] (MSSM), Neuroscience Paris Seine (NPS), Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Paris Seine (IBPS), Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Università degli studi di Torino = University of Turin (UNITO), Azienda Ospedalerio - Universitaria Città della Salute e della Scienza di Torino = University Hospital Città della Salute e della Scienza di Torino, The University of Hong Kong (HKU), University of Illinois [Chicago] (UIC), University of Illinois System, University of Miami Leonard M. Miller School of Medicine (UMMSM), University of Trento [Trento], University of California [Irvine] (UC Irvine), Nationwide Children's Hospital, University of California [Davis] (UC Davis), Universidade do Minho = University of Minho [Braga], Massachusetts General Hospital [Boston, MA, USA], Escola Politecnica da Universidade de Sao Paulo [Sao Paulo], Università degli Studi di Messina = University of Messina (UniMe), Università degli Studi di Siena = University of Siena (UNISI), Azienda Ospedaliera Universitaria Senese, Vanderbilt University [Nashville], Vanderbilt University School of Medicine [Nashville], Università degli studi di Verona = University of Verona (UNIVR), University of Texas Health Science Center, The University of Texas Health Science Center at Houston (UTHealth), Università Campus Bio-Medico di Roma / University Campus Bio-Medico of Rome ( UCBM), Emory University School of Medicine, Emory University [Atlanta, GA], Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Autism Sequencing Consortium (ASC), Broad Institute Center for Common Disease Genomics (Broad-CCDG), iPSYCH-BROAD Consortium : Branko Aleksic, Mykyta Artomov, Elisa Benetti, Monica Biscaldi-Schafer, Anders D Børglum, Angel Carracedo, Andreas G Chiocchetti, Hilary Coon, Ryan N Doan, Montserrat Fernández-Prieto, Christine M Freitag, Sherif Gerges, Stephen Guter, David M Hougaard, Christina M Hultman, Suma Jacob, Miia Kaartinen, Alexander Kolevzon, Itaru Kushima, Terho Lehtimäki, Caterina Lo Rizzo, Nell Maltman, Marianna Manara, Gal Meiri, Idan Menashe, Judith Miller, Nancy Minshew, Matthew Mosconi, Norio Ozaki, Aarno Palotie, Mara Parellada, Kaija Puura, Abraham Reichenberg, Sven Sandin, Stephen W Scherer, Sabine Schlitt, Lauren Schmitt, Katja Schneider-Momm, Paige M Siper, Pål Suren, John A Sweeney, Karoline Teufel, Maria Del Pilar Trelles, Lauren A Weiss, Ryan Yuen., and Betancur, Catalina
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Broad Institute Center for Common Disease Genomics ,Autism Sequencing Consortium ,DNA Copy Number Variations ,Autism Spectrum Disorder ,[SDV.NEU.NB]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Neurobiology ,Autism ,Intellectual and Developmental Disabilities (IDD) ,iPSYCH-BROAD Consortium ,autism spectrum disorders ,disease gene ,copy number variants ,neuropsychiatric disorders ,[SDV.GEN.GH] Life Sciences [q-bio]/Genetics/Human genetics ,GENOMAS ,Medical and Health Sciences ,Article ,Clinical Research ,Genetics ,Humans ,2.1 Biological and endogenous factors ,Genetic Predisposition to Disease ,Autistic Disorder ,Aetiology ,Genetic association study ,Pediatric ,Human Genome ,Neurodevelopmental disorders ,[SDV.NEU.NB] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Neurobiology ,Biological Sciences ,Autism spectrum disorders ,Brain Disorders ,Mental Health ,[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics ,Mutation ,Gene expression ,Biotechnology ,Developmental Biology - Abstract
International audience; Some individuals with autism spectrum disorder (ASD) carry functional mutations rarely observed in the general population. We explored the genes disrupted by these variants from joint analysis of protein-truncating variants (PTVs), missense variants and copy number variants (CNVs) in a cohort of 63,237 individuals. We discovered 72 genes associated with ASD at false discovery rate (FDR) ≤ 0.001 (185 at FDR ≤ 0.05). De novo PTVs, damaging missense variants and CNVs represented 57.5%, 21.1% and 8.44% of association evidence, while CNVs conferred greatest relative risk. Meta-analysis with cohorts ascertained for developmental delay (DD) (n = 91,605) yielded 373 genes associated with ASD/DD at FDR ≤ 0.001 (664 at FDR ≤ 0.05), some of which differed in relative frequency of mutation between ASD and DD cohorts. The DD-associated genes were enriched in transcriptomes of progenitor and immature neuronal cells, whereas genes showing stronger evidence in ASD were more enriched in maturing neurons and overlapped with schizophrenia-associated genes, emphasizing that these neuropsychiatric disorders may share common pathways to risk.
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- 2022
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3. Family-based association of FKBP5 in bipolar disorder
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Willour, V L, Chen, H, Toolan, J, Belmonte, P, Cutler, D J, Goes, F S, Zandi, P P, Lee, R S, MacKinnon, D F, Mondimore, F M, Schweizer, B, DePaulo, Jr, J R, Gershon, E S, McMahon, F J, and Potash, J B
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- 2009
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4. Comparative analyses of multi-species sequences from targeted genomic regions
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Thomas, J. W., Touchman, J. W., Blakesley, R. W., Bouffard, G. G., Beckstrom-Sternberg, S. M., Margulies, E. H., Blanchette, M., Siepel, A. C., Thomas, P. J., McDowell, J. C., Maskeri, B., Hansen, N. F., Schwartz, M. S., Weber, R. J., Kent, W. J., Karolchik, D., Bruen, T. C., Bevan, R., Cutler, D. J., Schwartz, S., Elnitski, L., Idol, J. R., Prasad, A. B., Lee-Lin, S.-Q., Maduro, V. V. B., Summers, T. J., Portnoy, M. E., Dietrich, N. L., Akhter, N., Ayele, K., Benjamin, B., Cariaga, K., Brinkley, C. P., Brooks, S. Y., Granite, S., Guan, X., Gupta, J., Haghighi, P., Ho, S.-L., Huang, M. C., Karlins, E., Laric, P. L., Legaspi, R., Lim, M. J., Maduro, Q. L., Masiello, C. A., Mastrian, S. D., McCloskey, J. C., Pearson, R., Stantripop, S., Tiongson, E. E., Tran, J. T., Tsurgeon, C., Vogt, J. L., Walker, M. A., Wetherby, K. D., Wiggins, L. S., Young, A. C., Zhang, L.-H., Osoegawa, K., Zhu, B., Zhao, B., Shu, C. L., De Jong, P. J., Lawrence, C. E., Smit, A. F., Chakravarti, A., Haussler, D., Green, P., Miller, W., and Green, E. D.
- Abstract
Author(s): J. W. Thomas [1, 11]; J. W. Touchman [1, 2, 11]; R. W. Blakesley [1, 2]; G. G. Bouffard [1, 2]; S. M. Beckstrom-Sternberg [1, 2]; E. H. Margulies [...]
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- 2003
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5. Theoretical Contributions to Pharmacokinetics
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Cutler, D. J.
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615.1 - Published
- 1975
6. GENETIC MODIFIERS OF CYSTIC FIBROSIS-RELATED DIABETES: 191
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Blackman, S. M., Hsu, S., Naughton, K., Coleman, B., Lai, T., Bowers, A., Cutler, D. J., and Cutting, G. R.
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- 2006
7. Genetic contributors to risk of schizophrenia in the presence of a 22q11.2 deletion
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Cleynen, I., Engchuan, W., Hestand, M. S., Heung, T., Holleman, A. M., Johnston, H. R., Monfeuga, T., McDonald-McGinn, D. M., Gur, R. E., Morrow, B. E., Swillen, A., Vorstman, J. A. S., Bearden, C. E., Chow, E. W. C., van den Bree, M., Emanuel, B. S., Vermeesch, J. R., Warren, S. T., Owen, M. J., Chopra, P., Cutler, D. J., Duncan, R., Kotlar, A. V., Mulle, J. G., Voss, A. J., Zwick, M. E., Diacou, A., Golden, A., Guo, T., Lin, J. -R., Wang, T., Zhang, Z., Zhao, Yu Yang, Marshall, C., Merico, D., Jin, A., Lilley, B., Salmons, H. I., Tran, O., Holmans, P., Pardinas, A., Walters, J. T. R., Demaerel, W., Boot, E., Butcher, N. J., Costain, G. A., Lowther, C., Evers, R., van Amelsvoort, T. A. M. J., van Duin, E., Vingerhoets, C., Breckpot, J., Devriendt, K., Vergaelen, E., Vogels, A., Crowley, T. B., Mcginn, D. E., Moss, E. M., Sharkus, R. J., Unolt, M., Zackai, E. H., Calkins, M. E., Gallagher, R. S., Gur, R. C., Tang, S. X., Fritsch, R., Ornstein, C., Repetto, G. M., Breetvelt, E., Duijff, S. N., Fiksinski, A., Moss, H., Niarchou, M., Murphy, K. C., Prasad, S. E., Daly, E. M., Gudbrandsen, M., Murphy, C. M., Murphy, D. G., Buzzanca, A., Fabio, F. D., Digilio, M. C., Pontillo, M., Marino, B., Vicari, Stefano, Coleman, K., Cubells, J. F., Ousley, O. Y., Carmel, M., Gothelf, D., Mekori-Domachevsky, E., Michaelovsky, E., Weinberger, R., Weizman, A., Kushan, L., Jalbrzikowski, M., Armando, M., Eliez, S., Sandini, C., Schneider, M., Bena, F. S., Antshel, K. M., Fremont, W., Kates, W. R., Belzeaux, R., Busa, T., Philip, N., Campbell, L. E., Mccabe, K. L., Hooper, S. R., Schoch, K., Shashi, V., Simon, T. J., Tassone, F., Arango, C., Fraguas, D., Garcia-Minaur, S., Morey-Canyelles, J., Rosell, J., Suner, D. H., Raventos-Simic, J., Epstein, M. P., Williams, N. M., Bassett, A. S., Zhao Y., Vicari S. (ORCID:0000-0002-5395-2262), Cleynen, I., Engchuan, W., Hestand, M. S., Heung, T., Holleman, A. M., Johnston, H. R., Monfeuga, T., McDonald-McGinn, D. M., Gur, R. E., Morrow, B. E., Swillen, A., Vorstman, J. A. S., Bearden, C. E., Chow, E. W. C., van den Bree, M., Emanuel, B. S., Vermeesch, J. R., Warren, S. T., Owen, M. J., Chopra, P., Cutler, D. J., Duncan, R., Kotlar, A. V., Mulle, J. G., Voss, A. J., Zwick, M. E., Diacou, A., Golden, A., Guo, T., Lin, J. -R., Wang, T., Zhang, Z., Zhao, Yu Yang, Marshall, C., Merico, D., Jin, A., Lilley, B., Salmons, H. I., Tran, O., Holmans, P., Pardinas, A., Walters, J. T. R., Demaerel, W., Boot, E., Butcher, N. J., Costain, G. A., Lowther, C., Evers, R., van Amelsvoort, T. A. M. J., van Duin, E., Vingerhoets, C., Breckpot, J., Devriendt, K., Vergaelen, E., Vogels, A., Crowley, T. B., Mcginn, D. E., Moss, E. M., Sharkus, R. J., Unolt, M., Zackai, E. H., Calkins, M. E., Gallagher, R. S., Gur, R. C., Tang, S. X., Fritsch, R., Ornstein, C., Repetto, G. M., Breetvelt, E., Duijff, S. N., Fiksinski, A., Moss, H., Niarchou, M., Murphy, K. C., Prasad, S. E., Daly, E. M., Gudbrandsen, M., Murphy, C. M., Murphy, D. G., Buzzanca, A., Fabio, F. D., Digilio, M. C., Pontillo, M., Marino, B., Vicari, Stefano, Coleman, K., Cubells, J. F., Ousley, O. Y., Carmel, M., Gothelf, D., Mekori-Domachevsky, E., Michaelovsky, E., Weinberger, R., Weizman, A., Kushan, L., Jalbrzikowski, M., Armando, M., Eliez, S., Sandini, C., Schneider, M., Bena, F. S., Antshel, K. M., Fremont, W., Kates, W. R., Belzeaux, R., Busa, T., Philip, N., Campbell, L. E., Mccabe, K. L., Hooper, S. R., Schoch, K., Shashi, V., Simon, T. J., Tassone, F., Arango, C., Fraguas, D., Garcia-Minaur, S., Morey-Canyelles, J., Rosell, J., Suner, D. H., Raventos-Simic, J., Epstein, M. P., Williams, N. M., Bassett, A. S., Zhao Y., and Vicari S. (ORCID:0000-0002-5395-2262)
- Abstract
Schizophrenia occurs in about one in four individuals with 22q11.2 deletion syndrome (22q11.2DS). The aim of this International Brain and Behavior 22q11.2DS Consortium (IBBC) study was to identify genetic factors that contribute to schizophrenia, in addition to the ~20-fold increased risk conveyed by the 22q11.2 deletion. Using whole-genome sequencing data from 519 unrelated individuals with 22q11.2DS, we conducted genome-wide comparisons of common and rare variants between those with schizophrenia and those with no psychotic disorder at age ≥25 years. Available microarray data enabled direct comparison of polygenic risk for schizophrenia between 22q11.2DS and independent population samples with no 22q11.2 deletion, with and without schizophrenia (total n = 35,182). Polygenic risk for schizophrenia within 22q11.2DS was significantly greater for those with schizophrenia (padj = 6.73 × 10−6). Novel reciprocal case–control comparisons between the 22q11.2DS and population-based cohorts showed that polygenic risk score was significantly greater in individuals with psychotic illness, regardless of the presence of the 22q11.2 deletion. Within the 22q11.2DS cohort, results of gene-set analyses showed some support for rare variants affecting synaptic genes. No common or rare variants within the 22q11.2 deletion region were significantly associated with schizophrenia. These findings suggest that in addition to the deletion conferring a greatly increased risk to schizophrenia, the risk is higher when the 22q11.2 deletion and common polygenic risk factors that contribute to schizophrenia in the general population are both present.
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- 2020
8. Plasma protein binding of the enantiomers of hydroxychloroquine and metabolites
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McLachlan, A. J., Cutler, D. J., and Tett, S. E.
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- 1993
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9. Effects of Vasoactive Intestinal Polypeptide on Neurones of the Rat Suprachiasmatic Nuclei In Vitro
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Reed, H. E., Cutler, D. J., Brown, T. M., Brown, J., Coen, C. W., and Piggins, H. D.
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- 2002
10. Recessive gene disruptions in autism spectrum disorder
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Doan, R. N., Lim, E. T., De Rubeis, S., Betancur, C., Cutler, D. J., Chiocchetti, A. G., Overman, L. M., Soucy, A., Goetze, S., Asc, Consortium, Brusco, A., Curró, A., Fallerini, C., Lopergolo, D., Lintas, C., Domenici, E., Dalla Bernardina, B., Ferrero, G. B., Giorgio, E., Trabetti, E., Renieri, A., Riberi, E., Freitag, C. M., Daly, M. J., Walsh, C. A., Buxbaum, J. D., T. W., Yu, Dupuis, Christine, Boston Children's Hospital, Harvard Medical School [Boston] (HMS), Icahn School of Medicine at Mount Sinai [New York] (MSSM), Neuroscience Paris Seine (NPS), Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Paris Seine (IBPS), Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Emory University School of Medicine, Emory University [Atlanta, GA], Universitätsklinikum Frankfurt, Goethe-University Frankfurt am Main, Newcastle University [Newcastle], Broad Institute [Cambridge], Harvard University [Cambridge]-Massachusetts Institute of Technology (MIT), Massachusetts General Hospital [Boston], Howard Hughes Medical Institute [Boston] (HHMI), Howard Hughes Medical Institute (HHMI)-Harvard Medical School [Boston] (HMS), Autism Sequencing Consortium, Neurosciences Paris Seine (NPS), Sorbonne Université (SU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Biologie Paris Seine (IBPS), Sorbonne Université (SU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Génétique de l'autisme = Genetics of Autism (NPS-01), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Biologie Paris Seine (IBPS), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Biologie Paris Seine (IBPS), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), and Massachusetts Institute of Technology (MIT)-Harvard University [Cambridge]
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Male ,genetic structures ,Autism Spectrum Disorder ,[SDV]Life Sciences [q-bio] ,Allelic Imbalance ,medicine.disease_cause ,Whole Exome Sequencing ,Cohort Studies ,0302 clinical medicine ,Missense mutation ,MESH: Cohort Studies ,Exome sequencing ,MESH: Autism Spectrum Disorder ,Genetics ,0303 health sciences ,Mutation ,Genome ,biology ,SLC1A1 ,MESH: Genetic Predisposition to Disease ,MESH: Case-Control Studies ,[SDV] Life Sciences [q-bio] ,Case-Control Studies ,Female ,Genes, Recessive ,Genome, Human ,Humans ,Genetic Predisposition to Disease ,Mutation, Missense ,Autism spectrum disorder ,Human ,Article ,03 medical and health sciences ,MESH: Whole Exome Sequencing ,mental disorders ,Exome Sequencing ,medicine ,Recessive ,Gene ,MESH: Genes, Recessive ,MESH: Genome, Human ,030304 developmental biology ,MESH: Mutation, Missense ,MESH: Humans ,MESH: Allelic Imbalance ,Case-control study ,medicine.disease ,MESH: Male ,Genes ,biology.protein ,Missense ,MESH: Female ,030217 neurology & neurosurgery - Abstract
Autism spectrum disorder (ASD) affects up to 1 in 59 individuals1. Genome-wide association and large-scale sequencing studies strongly implicate both common variants2–4 and rare de novo variants5–10 in ASD. Recessive mutations have also been implicated11–14 but their contribution remains less well defined. Here we demonstrate an excess of biallelic loss-of-function and damaging missense mutations in a large ASD cohort, corresponding to ~5% of total cases, including 10% of females, consistent with a female protective effect. We document biallelic disruption of known or emerging recessive neurodevelopmental genes (CA2, DDHD1, NSUN2, PAH, RARB, ROGDI, SLC1A1, USH2A) as well as other genes not previously implicated in ASD including the transcription factor FEV, a key regulator of the serotonergic circuitry. Our data refine estimates of the contribution of recessive mutation to ASD and suggest new paths for illuminating novel biological pathways responsible for this condition., Editorial Summary: Analysis of whole exome sequencing data from 2,343 individuals with autism spectrum disorder (ASD) compared to 5,852 unaffected individuals demonstrates an excess of biallelic, autosomal mutations for both loss-of-function and damaging missense variants.
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- 2018
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11. Laser Raman Spectroscopy on Synthetic Polymers
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Cutler, D. J., Hendra, P. J., Fraser, G., and Dawkins, J. V., editor
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- 1980
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12. Pharmacokinetics and Cellular Uptake of 4-Aminoquinoline Antimalarials
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Cutler, D. J., primary, MacIntyre, A. C., additional, and Tett, S. E., additional
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- 1988
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13. Apparent dose-dependence of chloroquine pharmacokinetics due to limited assay sensitivity and short sampling times
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Tett, S. E. and Cutler, D. J.
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- 1987
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14. Excess variants in AFF2 detected by massively parallel sequencing of males with autism spectrum disorder
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Mondal, K., primary, Ramachandran, D., additional, Patel, V. C., additional, Hagen, K. R., additional, Bose, P., additional, Cutler, D. J., additional, and Zwick, M. E., additional
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- 2012
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15. Origins, distribution and expression of the Duarte-2 (D2) allele of galactose-1-phosphate uridylyltransferase
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Carney, A. E., primary, Sanders, R. D., additional, Garza, K. R., additional, McGaha, L. A., additional, Bean, L. J. H., additional, Coffee, B. W., additional, Thomas, J. W., additional, Cutler, D. J., additional, Kurtkaya, N. L., additional, and Fridovich-Keil, J. L., additional
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- 2009
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16. Kinetics of metabolism and degradation of mometasone furoate in rat biological fluids and tissues
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Teng, X W, primary, Cutler, D J, additional, and Davies, N M, additional
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- 2003
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17. The Evolution of an α-Esterase Pseudogene Inactivated in the Drosophila melanogaster Lineage
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Robin, G. Charles de Q., primary, Russell, R. J., additional, Cutler, D. J., additional, and Oakeshott, J. G., additional
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- 2000
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18. BIOAVAILABILITY OF HYDROXYCHLOROQUINE TABLETS IN PATIENTS WITH RHEUMATOID ARTHRITIS
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McLACHLAN, A.J., primary, TETT, S. E., additional, CUTLER, D. J., additional, and DAY, R. O., additional
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- 1994
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19. Absorption and in vivo dissolution of hydroxycholoroquine in fed subjects assessed using deconvolution techniques
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McLACHLAN, A. J., primary, TETT, S. E., additional, CUTLER, D. J., additional, and DAY, R. O., additional
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- 1993
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20. Blood to plasma ratio of mefloquine: Interpretation and pharmacokinetic implications
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Tajerzadeh, H., primary and Cutler, D. J., additional
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- 1993
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21. A Demonstration of Truly Remote In-Line Near-Infrared Process Analysis
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Mackison, R., primary, Brinkworth, S. J., additional, Belchamber, R. M., additional, Aries, R. E., additional, Cutler, D. J., additional, Deeley, C., additional, and Mould, H. M., additional
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- 1992
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22. Mayflower Mine 1500 GV detector - Cosmic-ray anisotropy and search for Cygnus X-3
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Cutler, D. J., primary and Groom, D. E., additional
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- 1991
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23. An observation of resonance Raman in the near‐infrared
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Bennett, R., primary, Cutler, D. J., additional, Mould, H. M., additional, and Chapman, D., additional
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- 1990
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24. The hypothalamus and the regulation of energy homeostasis: lifting the lid on a black box.
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Williams, G, Harrold, J A, and Cutler, D J
- Abstract
The hypothalamus is the focus of many peripheral signals and neural pathways that control energy homeostasis and body weight. Emphasis has moved away from anatomical concepts of 'feeding' and 'satiety' centres to the specific neurotransmitters that modulate feeding behaviour and energy expenditure. We have chosen three examples to illustrate the physiological roles of hypothalamic neurotransmitters and their potential as targets for the development of new drugs to treat obesity and other nutritional disorders. Neuropeptide Y (NPY) is expressed by neurones of the hypothalamic arcuate nucleus (ARC) that project to important appetite-regulating nuclei, including the paraventricular nucleus (PVN). NPY injected into the PVN is the most potent central appetite stimulant known, and also inhibits thermogenesis; repeated administration rapidly induces obesity. The ARC NPY neurones are stimulated by starvation, probably mediated by falls in circulating leptin and insulin (which both inhibit these neurones), and contribute to the increased hunger in this and other conditions of energy deficit. They therefore act homeostatically to correct negative energy balance. ARC NPY neurones also mediate hyperphagia and obesity in the ob/ob and db/db mice and fa/fa rat, in which leptin inhibition is lost through mutations affecting leptin or its receptor. Antagonists of the Y5 receptor (currently thought to be the NPY 'feeding' receptor) have anti-obesity effects. Melanocortin-4 receptors (MC4-R) are expressed in various hypothalamic regions, including the ventromedial nucleus and ARC. Activation of MC4-R by agonists such as alpha-melanocyte-stimulating hormone (a cleavage product of pro-opiomelanocortin which is expressed in ARC neurones) inhibits feeding and causes weight loss. Conversely, MC4-R antagonists such as 'agouti' protein and agouti gene-related peptide (AGRP) stimulate feeding and cause obesity. Ectopic expression of agouti in the hypothalamus leads to obesity in the AVY mouse, while AGRP is co-expressed by NPY neurones in the ARC. Synthetic MC4-R agonists may ultimately find use as anti-obesity drugs in human subjects Orexins-A and -B, derived from prepro-orexin, are expressed in specific neurones of the lateral hypothalamic area (LHA). Orexin-A injected centrally stimulates eating and prepro-orexin mRNA is up regulated by fasting and hypoglycaemia. The LHA is important in receiving sensory signals from the gut and liver, and in sensing glucose, and orexin neurones may be involved in stimulating feeding in response to falls in plasma glucose. [ABSTRACT FROM AUTHOR]
- Published
- 2000
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25. Use of optical fibres in Raman spectroscopy.
- Author
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Hendra, P. J., Ellis, G., and Cutler, D. J.
- Published
- 1988
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26. A new multichannel Raman optical activity instrument.
- Author
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Barron, L. D., Torrance, J. F., and Cutler, D. J.
- Published
- 1987
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27. BIOAVAILABILITY OF HYDROXYCHLOROQUINE TABLETS IN PATIENTS WITH RHEUMATOID ARTHRITIS.
- Author
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McLACHLAN, A.J., TETT, S. E., CUTLER, D. J., and DAY, R. O.
- Abstract
Nine patients with RA received two doses of 155 mg racemic hydroxychloroquine each, as a tablet and by i.v. infusion, in a randomized cross-over design study. Blood concentrations over the first 32 h following each dose were determined. Bioavailability was estimated using a sequential exponential least squares deconvolution method. The mean fraction absorbed from the tablet was 0.79 (range 0.39 to 1.27). The mean absorption lag-time was 1.3 h (range 0.5 to 3.7 h) and the mean time for 50% absorption was 4.3 h (range 1.9 to 10.3 h). Mean rate and extent of hydroxychloroquine absorption were not significantly different from that previously reported for healthy volunteers, although the interindividual variability in absorption parameters was greater in the patient group. Variability in the extent of absorption would lead to differences in steady-state hydroxychloroquine concentrations between patients, potentially contributing to the variability in response observed in clinical practice. [ABSTRACT FROM PUBLISHER]
- Published
- 1994
- Full Text
- View/download PDF
28. High-throughput variation detection and genotyping using microarrays.
- Author
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Cutler, D J, Zwick, M E, Carrasquillo, M M, Yohn, C T, Tobin, K P, Kashuk, C, Mathews, D J, Shah, N A, Eichler, E E, Warrington, J A, and Chakravarti, A
- Abstract
The genetic dissection of complex traits may ultimately require a large number of SNPs to be genotyped in multiple individuals who exhibit phenotypic variation in a trait of interest. Microarray technology can enable rapid genotyping of variation specific to study samples. To facilitate their use, we have developed an automated statistical method (ABACUS) to analyze microarray hybridization data and applied this method to Affymetrix Variation Detection Arrays (VDAs). ABACUS provides a quality score to individual genotypes, allowing investigators to focus their attention on sites that give accurate information. We have applied ABACUS to an experiment encompassing 32 autosomal and eight X-linked genomic regions, each consisting of approximately 50 kb of unique sequence spanning a 100-kb region, in 40 humans. At sufficiently high-quality scores, we are able to read approximately 80% of all sites. To assess the accuracy of SNP detection, 108 of 108 SNPs have been experimentally confirmed; an additional 371 SNPs have been confirmed electronically. To access the accuracy of diploid genotypes at segregating autosomal sites, we confirmed 1515 of 1515 homozygous calls, and 420 of 423 (99.29%) heterozygotes. In replicate experiments, consisting of independent amplification of identical samples followed by hybridization to distinct microarrays of the same design, genotyping is highly repeatable. In an autosomal replicate experiment, 813,295 of 813,295 genotypes are called identically (including 351 heterozygotes); at an X-linked locus in males (haploid), 841,236 of 841,236 sites are called identically.
- Published
- 2001
- Full Text
- View/download PDF
29. Orexin-A immunoreactive neurons in the rat hypothalamus do not contain neuronal nitric oxide synthase (nNOS)
- Author
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Cutler, D. J., Morris, R., Evans, M. L., Leslie, R. A., Arch, J. R., and Williams, G.
- Published
- 2001
- Full Text
- View/download PDF
30. High-performance liquid chromatographic analysis of mometasone furoate and its degradation products
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Teng, X. W., Foe, K., Brown, K. F., Cutler, D. J., and Davies, N. M.
- Published
- 2001
- Full Text
- View/download PDF
31. On the mechanism of transport of salicylate and p-hydroxybenzoic acid across human red cell membranes
- Author
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Joy, M M and Cutler, D J
- Abstract
The pH-dependence of efflux of salicylate and p-hydroxybenzoic acid (PHB) from human red cells indicates that the un-ionized species penetrates the membrane. No effect of the anion channel blocker 4,4′-diisothiocyano-2,2′-disulphonic stilbene was observed. The temperature-dependence of efflux suggests that the energy barrier to transport of salicylate and PHB is the transfer of the acids from water into the membrane, rather than transport through the membrane interior. Intracellular binding of both acids was found to be pH-dependent.
- Published
- 1987
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32. Level B and C in vivo/in vitro correlations: statistical considerations
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Cutler, D. J., Beyssac, E., and Aiache, J.-M.
- Published
- 1997
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- View/download PDF
33. Responses to neuropeptide Y in adult hamster suprachiasmatic nucleus neurones in vitro
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Cutler, D. J., Piggins, H. D., Selbie, L. A., and Mason, R.
- Published
- 1998
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- View/download PDF
34. Pharmacokinetics of Dexamethasone and Its Relationship to Dexamethasone Suppression Test Outcome in Depressed Patients and Healthy Control Subjects
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O'Sullivan, B. T., Cutler, D. J., Hunt, G. E., Walters, C., Johnson, G. F., and Caterson, I. D.
- Published
- 1997
- Full Text
- View/download PDF
35. Observation of terrestrial orbital motion using the cosmic-ray Compton-Getting effect.
- Author
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Cutler, D. J. and Groom, D. E.
- Published
- 1986
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36. Theory of the mean absorption time, an adjunct to conventional bioavailability studies
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Cutler, D J, primary
- Published
- 1978
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37. The pH-dependence of chloroquine uptake by phosphatidylcholine vesicles
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Ferrari, V, primary and Cutler, D J, additional
- Published
- 1986
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38. Linear polyethylene in a glassy phase: The value of the glass‐transition temperature
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Cutler, D. J., primary, Glotin, M., additional, Hendra, P. J., additional, Jobic, H., additional, Moritz, K. Holland, additional, Cudby, M. E. A., additional, and Willis, H. A., additional
- Published
- 1979
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- View/download PDF
39. Measurement of the cosmic-ray sidereal anisotropy near 1500 GV
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Cutler, D. J., primary, Bergeson, H. E., additional, Davies, J. F., additional, and Groom, D. E., additional
- Published
- 1981
- Full Text
- View/download PDF
40. Ionophoretically applied substance P activates hamster suprachiasmatic nucleus neurons
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Piggins, H. D., Cutler, D. J., and Rusak, B.
- Published
- 1995
- Full Text
- View/download PDF
41. Electrophysiological actions of orexins on rat suprachiasmatic neurons in vitro.
- Author
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Brown TM, Coogan AN, Cutler DJ, Hughes AT, and Piggins HD
- Subjects
- Animals, Arousal, Dose-Response Relationship, Drug, Electrophysiology, Excitatory Amino Acid Agonists pharmacology, Extracellular Space drug effects, Extracellular Space physiology, In Vitro Techniques, Male, Microelectrodes, N-Methylaspartate pharmacology, Orexins, Rats, Rats, Wistar, Suprachiasmatic Nucleus cytology, Intracellular Signaling Peptides and Proteins pharmacology, Neurons drug effects, Neuropeptides pharmacology, Suprachiasmatic Nucleus drug effects
- Abstract
The study of neural arousal mechanisms has been greatly aided by the discovery of the orexin peptides (orexin A and orexin B), the subsequent identification of the neurons that synthesize these peptides, their projections in the brain, and the distribution of orexin receptors in the central nervous system. Orexin neuron activation is partly controlled by circadian signals generated in the brain's main circadian pacemaker, the suprachiasmatic nuclei (SCN). The SCN clock is in turn reset by arousal-promoting stimuli and, intriguingly, orexin fibers and receptor expression are detected in the SCN region. It is unclear, however, if orexin can alter SCN neuronal activity. Here using a coronal brain slice preparation, we found that orexin A and orexin B (0.1-1 microM) elicited significant changes in the extracellularly recorded firing rate and firing pattern in approximately 80% of rat SCN cells tested; the most common response was suppression of firing rate. Co-application of orexin A with a cocktail of ionotropic GABA and glutamate receptor antagonists did not alter the actions of this peptide on firing rate, but did change some its effects on firing pattern. We conclude that orexins can alter SCN neurophysiology and may influence the transmission of information through the SCN to other CNS regions.
- Published
- 2008
- Full Text
- View/download PDF
42. The roles of vasoactive intestinal polypeptide in the mammalian circadian clock.
- Author
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Piggins HD and Cutler DJ
- Subjects
- Animals, Behavior, Animal drug effects, Feedback, Physiological, Humans, Receptors, Vasoactive Intestinal Peptide physiology, Receptors, Vasoactive Intestinal Peptide, Type II, Signal Transduction, Suprachiasmatic Nucleus drug effects, Biological Clocks physiology, Circadian Rhythm, Light, Mammals physiology, Suprachiasmatic Nucleus physiology, Vasoactive Intestinal Peptide metabolism
- Abstract
Biological oscillations with an endogenous period of near 24 h (circadian rhythms) are generated by the master circadian pacemaker or clock located in the suprachiasmatic nuclei (SCN) of the hypothalamus. This clock is synchronised to recurring environmental signals conveyed by selective neural pathways. One of the main chemical constituents of SCN neurones is vasoactive intestinal polypeptide (VIP). Such neurones are retinorecipient and activated by light. Exogenous application of VIP resets the SCN circadian clock in a light-like manner, both in vivo and in vitro. These resetting actions appear to be mediated through the VPAC2 receptor (a type of receptor for VIP). Unexpectedly, genetically ablating expression of the VPAC2 receptor renders the circadian clock arrhythmic at the molecular, neurophysiological and behavioural levels. These findings indicate that this intrinsic neuropeptide acting through the VPAC2 receptor participates in both resetting to light and maintenance of ongoing rhythmicity of the SCN.
- Published
- 2003
- Full Text
- View/download PDF
43. Distribution of substance P and neurokinin-1 receptor immunoreactivity in the suprachiasmatic nuclei and intergeniculate leaflet of hamster, mouse, and rat.
- Author
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Piggins HD, Samuels RE, Coogan AN, and Cutler DJ
- Subjects
- Animals, Axons metabolism, Cricetinae anatomy & histology, Geniculate Bodies cytology, Immunohistochemistry, Male, Mice, Mice, Inbred C57BL anatomy & histology, Rats, Rats, Wistar anatomy & histology, Suprachiasmatic Nucleus cytology, Cricetinae metabolism, Geniculate Bodies metabolism, Mice, Inbred C57BL metabolism, Rats, Wistar metabolism, Receptors, Neurokinin-1 metabolism, Substance P metabolism, Suprachiasmatic Nucleus metabolism
- Abstract
The circadian pacemaker in the hypothalamic suprachiasmatic nuclei (SCN) receives photic information directly via the retinohypothalamic tract (RHT) and indirectly from retinally innervated cells in the thalamic intergeniculate leaflet (IGL) that project to the SCN. Using standard immunohistochemical methods, we examined the presence and distribution of substance P (SP) and the neurokinin-1 receptor (NK-1) in the SCN and IGL of rat and determined whether the patterns of immunostaining generalized to the SCN and IGL of Syrian hamster, Siberian hamster, and mouse. Terminals immunoreactive for SP were sparse within the SCN of Siberian and Syrian hamsters and mouse but were intense in the ventral, retinally innervated portion of the rat SCN. Immunostaining for the NK-1 receptor was mainly absent from the SCN of hamster and mouse. In contrast, a plexus of NK-1-ir cells and processes that was in close proximity to SP-ir terminals was found in the ventral SCN of the rat. Substance P-ir terminals were observed in the IGL of all four species, as were NK-1-ir cells and fibres. Double-labelled IGL sections of hamster or rat revealed SP-ir terminals in close apposition to NK-1-immunostained cells and/or fibres. These data indicate that SP could be a neurotransmitter of the RHT in rat, but not in hamster or in mouse, and they highlight potential species differences in the role of SP within the SCN circadian pacemaker. Such species differences do not appear to exist at the level of the IGL, where SP-ir and NK-1-ir were similar in all species studied., (Copyright 2001 Wiley-Liss, Inc.)
- Published
- 2001
- Full Text
- View/download PDF
44. Vasoactive intestinal polypeptide (VIP) phase-shifts the rat suprachiasmatic nucleus clock in vitro.
- Author
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Reed HE, Meyer-Spasche A, Cutler DJ, Coen CW, and Piggins HD
- Subjects
- Action Potentials drug effects, Animals, Circadian Rhythm drug effects, Circadian Rhythm radiation effects, Dose-Response Relationship, Drug, Drug Administration Schedule, Growth Hormone-Releasing Hormone analogs & derivatives, Growth Hormone-Releasing Hormone pharmacology, Male, Neuropeptides pharmacology, Peptides, Cyclic pharmacology, Photic Stimulation, Pituitary Adenylate Cyclase-Activating Polypeptide, Rats, Rats, Wistar, Receptors, Pituitary Adenylate Cyclase-Activating Polypeptide, Receptors, Pituitary Hormone physiology, Receptors, Vasoactive Intestinal Peptide agonists, Receptors, Vasoactive Intestinal Peptide, Type II, Receptors, Vasoactive Intestinal Polypeptide, Type I, Suprachiasmatic Nucleus physiology, Suprachiasmatic Nucleus radiation effects, Vasoactive Intestinal Peptide agonists, Vasoactive Intestinal Peptide analogs & derivatives, Vasoactive Intestinal Peptide pharmacology, Circadian Rhythm physiology, Receptors, Vasoactive Intestinal Peptide physiology, Suprachiasmatic Nucleus drug effects, Vasoactive Intestinal Peptide physiology
- Abstract
In mammals, the principal circadian pacemaker is housed in the hypothalamic suprachiasmatic nuclei (SCN). The SCN exhibit high levels of vasoactive intestinal polypeptide (VIP) immunoreactivity and two of the three VIP receptors, VPAC(2) and PAC(1), are found in the rat SCN. However, the role of VIP in the SCN remains unclear. In this study, we examined the phase-resetting actions of VIP and selective VIP receptor agonists on the electrical activity rhythm of rat SCN neurons in vitro. Application of VIP during the subjective day did not shift the peak in the firing rate rhythm. However, VIP treatment during the early or late subjective night evoked a small phase delay or a large phase advance, respectively. The phase-advancing effect of VIP was reproduced by the novel VPAC(2) receptor agonist RO 25-1553, but not by pituitary adenylate cyclase-activating peptide (a potent PAC(1) receptor agonist), or by [K15,R16,L27]VIP(1-7)/GRF(8-27), a novel, selective VPAC(1) receptor agonist. These data show that VIP phase-dependently phase-resets the rodent SCN pacemaker in vitro, presumably via the VPAC(2) receptor. As the pattern of phase-shifting evoked by VIP and RO 25-1553 resembles the phase-resetting actions of light on rodent behavioural rhythms, these data support a role for VIP and the VPAC(2) receptor in photic entrainment of the rodent circadian pacemaker.
- Published
- 2001
- Full Text
- View/download PDF
45. Estimating divergence times in the presence of an overdispersed molecular clock.
- Author
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Cutler DJ
- Subjects
- Animals, Humans, Models, Genetic, Phylogeny, Plants, Time Factors, Evolution, Molecular, Genetic Variation genetics
- Abstract
Molecular loci that fail relative-rate tests are said to be "overdispersed." Traditional molecular-clock approaches to estimating divergence times do not take this into account. In this study, a method was developed to estimate divergence times using loci that may be overdispersed. The approach was to replace the traditional Poisson process assumption with a more general stationary process assumption. A probability model was developed, and an accompanying computer program was written to find maximum-likelihood estimates of divergence times under both the Poisson process and the stationary process assumptions. In simulation, it was shown that confidence intervals under the traditional Poisson assumptions often vastly underestimate the true confidence limits for overdispersed loci. Both models were applied to two data sets: one from land plants, the other from the higher metazoans. In both cases, the traditional Poisson process model could be rejected with high confidence. Maximum-likelihood analysis of the metazoan data set under the more general stationary process suggested that their radiation occurred well over a billion years ago, but confidence intervals were extremely wide. It was also shown that a model consistent with a Cambrian (or nearly Cambrian) origination of the animal phyla, although significantly less likely than a much older divergence, fitted the data well. It is argued that without an a priori understanding of the variance in the time between substitutions, molecular data sets may be incapable of ever establishing the age of the metazoan radiation.
- Published
- 2000
- Full Text
- View/download PDF
46. Metabolism kinetics of beclomethasone propionate esters in human lung homogenates.
- Author
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Foe K, Cutler DJ, Brown KF, and Seale JP
- Subjects
- Adolescent, Aged, Aged, 80 and over, Beclomethasone pharmacokinetics, Biotransformation, Chromatography, High Pressure Liquid, Female, Humans, In Vitro Techniques, Male, Middle Aged, Models, Biological, Nonlinear Dynamics, Spectrophotometry, Ultraviolet, Anti-Inflammatory Agents pharmacokinetics, Beclomethasone analogs & derivatives, Lung metabolism
- Abstract
Purpose: The purposes of this study were to characterize the kinetics of beclomethasone dipropionate (BDP) and its 17-monopropionate ester (17-BMP) in human lung 1000g supernatant (HLu) at 37 degrees C, and to analyze the interindividual variability in the metabolism of BDP in HLu., Methods: The concentrations of BDP and its metabolites were determined by HPLC with UV detection at 242 nm. Kinetics of BDP and 17-BMP decomposition were characterized by least-squares fitting of rate equations., Results: The active metabolite 17-BMP was rapidly formed following the incubation of BDP in HLu. Kinetics of BDP and 17-BMP in HLu were nonlinear owing to product inhibition and enzyme saturation. A model taking into account the product inhibition provides a kinetic basis for understanding the in vivo behavior of BDP and its metabolites in human lung. There was approximately a 3.5-fold difference in the initial half-life of BDP in HLu observed in seven subjects., Conclusions: An effective activation of BDP was demonstrated in HLu through the rapid formation of 17-BMP. Kinetics of BDP and 17-BMP in HLu were well characterized by the nonlinear kinetic model. Interindividual difference in the initial half-life of BDP was due mainly to esterase metabolizing activity rather than binding affinity.
- Published
- 2000
- Full Text
- View/download PDF
47. Concentration-effect relationship of hydroxychloroquine in patients with rheumatoid arthritis--a prospective, dose ranging study.
- Author
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Tett SE, Cutler DJ, Beck C, and Day RO
- Subjects
- Adult, Aged, Dose-Response Relationship, Drug, Female, Humans, Hydroxychloroquine pharmacokinetics, Hydroxychloroquine toxicity, Male, Middle Aged, Prospective Studies, Treatment Outcome, Arthritis, Rheumatoid drug therapy, Hydroxychloroquine administration & dosage
- Abstract
Objective: A 6 month prospective randomized double blind study was conducted to investigate hydroxychloroquine dose concentration-effect relationships in people with rheumatoid arthritis., Methods: Patients were randomized in 2 groups: one group received 200 mg hydroxychloroquine sulfate daily (A) and one group received 400 mg daily (B). Each month, 8 disease variables were assessed, adverse events recorded, and hydroxychloroquine blood concentrations determined., Results: Twenty-three patients were included: 10 in group A and 13 in group B. After 6 months of therapy, a significant improvement in disease activity was noted for 6 criteria with no statistical differences between groups: pain (assessed by a visual analog scale), joint scores (swelling and tenderness), impairment in daily living activity (18 activities graded 0 to 8), patient assessment of disease state, and erythrocyte sedimentation rate. Hydroxychloroquine steady-state blood concentrations (Month 6) were significantly different between groups (mean +/- SD): 450.6 +/- 285.3 ng/ml (A) vs 870.3 +/- 329.3 ng/ml (B) (p = 0.0001). Steady-state concentrations were correlated with the daily dose (r = 0.63, p = 0.005), the improvement in activity of daily living (r = 0.49, p = 0.03), and the improvement in joint tenderness score (r = 0.47, p = 0.038)., Conclusion: The data indicate that hydroxychloroquine is an effective therapy, but there were no further improvements observed in the group receiving 400 mg daily compared to those receiving 200 mg. There were some correlations between hydroxychloroquine steady-state blood concentrations and effects.
- Published
- 2000
48. The evolution of an alpha-esterase pseudogene inactivated in the Drosophila melanogaster lineage.
- Author
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Robin GC, Russell RJ, Cutler DJ, and Oakeshott JG
- Subjects
- Amino Acid Sequence, Animals, DNA Mutational Analysis, Genetic Variation, Molecular Sequence Data, Polymerase Chain Reaction, Polymorphism, Genetic, Sequence Homology, Amino Acid, Drosophila melanogaster genetics, Esterases genetics, Evolution, Molecular, Pseudogenes genetics
- Abstract
Previous analyses of the alpha-esterase cluster of Drosophila melanogaster revealed 10 active genes and the DmalphaE4a-Psi pseudogene. Here, we reconstruct the evolution of the pseudogene from the sequences of 12 alleles from widely scattered D. melanogaster populations and single alleles from Drosophila simulans and Drosophila yakuba. All of the DmalphaE4a-Psi alleles contain numerous inactivating mutations, suggesting that pseudogene alleles are fixed in natural populations. Several lines of evidence also suggest that DmalphaE4a is now evolving without selective constraint in the D. melanogaster lineage. There are three polymorphic indels which result in frameshifts; a key nucleotide of the intron splice acceptor is polymorphic; the neutral mutation parameter is the same for replacement and silent sites; one of the nonsilent polymorphisms results in a stop codon; only 1 of the 13 replacement polymorphisms is biochemically conservative; residues that are conserved among active esterases have different states in DmalphaE4a-Psi; and there are about half as many transitional polymorphisms as transversional ones. In contrast, the D. simulans and D. yakuba orthologs DsalphaE4a and DyalphaE4a do not have the inactivating mutations of DmalphaE4a-Psi and appear to be evolving under the purifying selection typical of protein- encoding genes. For instance, there have been more substitutions in the introns than in the exons, and more in silent sites than in replacement sites. Furthermore, most of the amino acid substitutions that have occurred between DyalphaE4a and DsalphaE4a are located in sites that typically vary among active alpha-esterases rather than those that are usually conserved. We argue that the original alphaE4a gene had a function which it has lost since the divergence of the D. melanogaster and D. simulans lineages.
- Published
- 2000
- Full Text
- View/download PDF
49. The index of dispersion of molecular evolution: slow fluctuations.
- Author
-
Cutler DJ
- Subjects
- Animals, Humans, Mutation, Poisson Distribution, Probability, Evolution, Molecular, Models, Genetic
- Abstract
The most simple neutral model of molecular evolution predicts that the number of substitutions within a lineage in T generations ought to be Poisson distributed. Therefore, the variance in the number of substitutions ought to equal the mean number. The ratio of the variance to the mean number of substitutions is called the index of dispersion, R(T). Assuming infinite sites, no recombination model of the gene, and a haploid, Moran population structure, R(T) is derived for a general stationary model of molecular evolution. R(T) is shown to be affected by fluctuations in parameters only when they occur on a very slow time scale. In order for parameter fluctuations to cause R(T) to deviate significantly from one, the time between parameter changes must be roughly as large, or larger, than the time between substitutions., (Copyright 2000 Academic Press.)
- Published
- 2000
- Full Text
- View/download PDF
50. Understanding the overdispersed molecular clock.
- Author
-
Cutler DJ
- Subjects
- Alleles, Animals, Environment, Mathematical Computing, Models, Genetic, Mutation, Selection, Genetic, Evolution, Molecular
- Abstract
Rates of molecular evolution at some protein-encoding loci are more irregular than expected under a simple neutral model of molecular evolution. This pattern of excessive irregularity in protein substitutions is often called the "overdispersed molecular clock" and is characterized by an index of dispersion, R(T) > 1. Assuming infinite sites, no recombination model of the gene R(T) is given for a general stationary model of molecular evolution. R(T) is shown to be affected by only three things: fluctuations that occur on a very slow time scale, advantageous or deleterious mutations, and interactions between mutations. In the absence of interactions, advantageous mutations are shown to lower R(T); deleterious mutations are shown to raise it. Previously described models for the overdispersed molecular clock are analyzed in terms of this work as are a few very simple new models. A model of deleterious mutations is shown to be sufficient to explain the observed values of R(T). Our current best estimates of R(T) suggest that either most mutations are deleterious or some key population parameter changes on a very slow time scale. No other interpretations seem plausible. Finally, a comment is made on how R(T) might be used to distinguish selective sweeps from background selection.
- Published
- 2000
- Full Text
- View/download PDF
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