1. Discovery of Selective PDE1 Inhibitors with Anti-pulmonary Fibrosis Effects by Targeting the Metal Pocket.
- Author
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Jiang MY, Zhang C, Huang QH, Feng LL, Yang YY, Zhou Q, Luo HB, and Wu Y
- Subjects
- Animals, Structure-Activity Relationship, Rats, Humans, Male, Rats, Sprague-Dawley, Drug Discovery, Bleomycin, Pyrimidines pharmacology, Pyrimidines chemistry, Pyrimidines chemical synthesis, Pyrimidines therapeutic use, Pulmonary Fibrosis drug therapy, Pulmonary Fibrosis chemically induced, Pulmonary Fibrosis pathology, Cyclic Nucleotide Phosphodiesterases, Type 1 antagonists & inhibitors, Cyclic Nucleotide Phosphodiesterases, Type 1 metabolism, Phosphodiesterase Inhibitors pharmacology, Phosphodiesterase Inhibitors chemical synthesis, Phosphodiesterase Inhibitors chemistry, Phosphodiesterase Inhibitors therapeutic use, Molecular Docking Simulation
- Abstract
Idiopathic pulmonary fibrosis (IPF) is a fatal lung disease with no ideal drugs. Our previous research demonstrated that phosphodiesterase 1 (PDE1) could be a promising target for the treatment of IPF. However, only a few selective PDE1 inhibitors are available, and the mechanism of recognition between inhibitors and the PDE1 protein is not fully understood. This study carried out a step-by-step optimization of a dihydropyrimidine hit Z94555858 . By targeting the metal pocket of PDE1, a lead compound 3f was obtained, exhibiting an IC
50 value of 11 nM against PDE1, moderate selectivity over other PDEs, and significant anti-fibrotic effects in bleomycin-induced pulmonary fibrosis rats. The structure-activity relationship study aided by molecular docking revealed that forming halogen bonds with water in the metal pocket greatly enhanced the PDE1 inhibition, providing a novel strategy for further rational design of PDE1 inhibitors.- Published
- 2024
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