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2. The transposable element-rich genome of the cereal pest Sitophilus oryzae

Author

Parisot, Nicolas, Vargas-Chávez, Carlos, Goubert, Clément, Baa-Puyoulet, Patrice, Balmand, Séverine, Beranger, Louis, Blanc, Caroline, Bonnamour, Aymeric, Boulesteix, Matthieu, Burlet, Nelly, Calevro, Federica, Callaerts, Patrick, Chancy, Théo, Charles, Hubert, Colella, Stefano, Da Silva Barbosa, André, Dell’Aglio, Elisa, Di Genova, Alex, Febvay, Gérard, Gabaldón, Toni, Galvão Ferrarini, Mariana, Gerber, Alexandra, Gillet, Benjamin, Hubley, Robert, Hughes, Sandrine, Jacquin-Joly, Emmanuelle, Maire, Justin, Marcet-Houben, Marina, Masson, Florent, Meslin, Camille, Montagné, Nicolas, Moya, Andrés, Ribeiro de Vasconcelos, Ana Tereza, Richard, Gautier, Rosen, Jeb, Sagot, Marie-France, Smit, Arian F. A., Storer, Jessica M., Vincent-Monegat, Carole, Vallier, Agnès, Vigneron, Aurélien, Zaidman-Rémy, Anna, Zamoum, Waël, Vieira, Cristina, Rebollo, Rita, Latorre, Amparo, and Heddi, Abdelaziz

Published
2021
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3. The genome of the cereal pest Sitophilus oryzae : a transposable element haven

Author

Parisot, Nicolas, Vargas-Chavez, Carlos, Goubert, Clément, Baa-Puyoulet, Patrice, Balmand, Séverine, Beranger, Louis, Blanc, Caroline, Bonnamour, Aymeric, Boulesteix, Matthieu, Burlet, Nelly, Calevro, Federica, Callaerts, Patrick, Chancy, Théo, Charles, Hubert, Colella, Stefano, Da Silva Barbosa, André, Dell’Aglio, Elisa, Di Genova, Alex, Febvay, Gérard, Gabaldon, Toni, Galvão Ferrarini, Mariana, Gerber, Alexandra, Gillet, Benjamin, Hubley, Robert, Hughes, Sandrine, Jacquin-Joly, Emmanuelle, Maire, Justin, Marcet-Houben, Marina, Masson, Florent, Meslin, Camille, Montagne, Nicolas, Moya, Andrés, Ribeiro de Vasconcelos, Ana Tereza, Richard, Gautier, Rosen, Jeb, Sagot, Marie-France, Smit, Arian F.A., Storer, Jessica, Vincent-Monegat, Carole, Vallier, Agnès, Vigneron, Aurélien, Zaidman-Remy, Anna, Zamoum, Waël, Vieira, Cristina, Rebollo, Rita, Latorre, Amparo, Heddi, Abdelaziz, Biologie Fonctionnelle, Insectes et Interactions (BF2I), Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre for Genomic Regulation [Barcelona] (CRG), Universitat Pompeu Fabra [Barcelona] (UPF)-Centro Nacional de Analisis Genomico [Barcelona] (CNAG), and Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

Subjects
[SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics, [SDV]Life Sciences [q-bio], [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], food and beverages
Abstract

Among beetles, the rice weevil Sitophilus oryzae is one of the most important pests causing extensive damage to cereal in fields and to stored grains. S. oryzae has an intracellular symbiotic relationship (endosymbiosis) with the Gram-negative bacterium Sodalis pierantonius and is a valuable model to decipher host-symbiont molecular interactions. We sequenced the Sitophilus oryzae genome using a combination of short and long reads to produce the best assembly for a Curculionidae species to date. We show that S. oryzae has undergone successive bursts of transposable element (TE) amplification, representing 72% of the genome. In addition, we show that many TE families are transcriptionally active, and changes in their expression are associated with insect endosymbiotic state. S. oryzae has undergone a high gene expansion rate, when compared to other beetles. Reconstruction of host-symbiont metabolic networks revealed that, despite its recent association with cereal weevils (30 Kyear), S. pierantonius relies on the host for several amino acids and nucleotides to survive and to produce vitamins and essential amino-acids required for insect development and cuticle biosynthesis. In addition to being an agricultural pest and a valuable endosymbiotic system, S. oryzae can be a remarkable model for studying TE evolution and regulation, along with the impact of TEs on eukaryotic genomes.

Published
2021

4. The genome of the cereal pest Sitophilus oryzae: a transposable element haven

Author

Parisot, Nicolas, primary, Vargas-Chavez, Carlos, additional, Goubert, Clément, additional, Baa-Puyoulet, Patrice, additional, Balmand, Séverine, additional, Beranger, Louis, additional, Blanc, Caroline, additional, Bonnamour, Aymeric, additional, Boulesteix, Matthieu, additional, Burlet, Nelly, additional, Calevro, Federica, additional, Callaerts, Patrick, additional, Chancy, Théo, additional, Charles, Hubert, additional, Colella, Stefano, additional, Da Silva Barbosa, André, additional, Dell’Aglio, Elisa, additional, Di Genova, Alex, additional, Febvay, Gérard, additional, Gabaldon, Toni, additional, Galvão Ferrarini, Mariana, additional, Gerber, Alexandra, additional, Gillet, Benjamin, additional, Hubley, Robert, additional, Hughes, Sandrine, additional, Jacquin-Joly, Emmanuelle, additional, Maire, Justin, additional, Marcet-Houben, Marina, additional, Masson, Florent, additional, Meslin, Camille, additional, Montagne, Nicolas, additional, Moya, Andrés, additional, Ribeiro de Vasconcelos, Ana Tereza, additional, Richard, Gautier, additional, Rosen, Jeb, additional, Sagot, Marie-France, additional, Smit, Arian F.A., additional, Storer, Jessica M., additional, Vincent-Monegat, Carole, additional, Vallier, Agnès, additional, Vigneron, Aurélien, additional, Zaidman-Remy, Anna, additional, Zamoum, Waël, additional, Vieira, Cristina, additional, Rebollo, Rita, additional, Latorre, Amparo, additional, and Heddi, Abdelaziz, additional

Published
2021
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6. Factores de riesgo para los desórdenes temporomandibulares: Análisis de regresión logística binaria.

Author

Magalhães, Bruno-Gama, de-Sousa, Stéphanie-Trajano, de Mello, Victor-Villaça-Cardoso, da-Silva-Barbosa, André-Cavalcante, de-Assis-Morais, Mariana-Pacheco-Lima, Barbosa-Vasconcelos, Márcia-Maria-Vendiciano, and Caldas-Júnior, Arnaldode-França

Abstract

Copyright of Medicina Oral, Patologia Oral y Cirugia Bucal is the property of Medicina Oral SL and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Published
2014

7. CONDIÇÕES DE SAÚDE BUCAL E SINTOMAS DEPRESSIVOS.

Author

Lima Milhomens, Francisco Henrique, Nunes Brasil, Aldair, de França Araújo, Heloísa, de Farias Barbosa, Saulo Valença, da Silva Barbosa, André Cavalcante, Vendiciano Barbosa Vasconcelos, Márcia Maria, Mourão Pinho, Roberto Carlos, and Caldas Júnior, Arnaldo de França

Published
2018

8. Risk factors for temporomandibular disorder: binary logistic regression analysis.

Author

Magalhães BG, de-Sousa ST, de Mello VV, da-Silva-Barbosa AC, de-Assis-Morais MP, Barbosa-Vasconcelos MM, and Caldas-Júnior AD

Subjects
Adolescent, Adult, Aged, Brazil epidemiology, Demography, Female, Humans, Male, Middle Aged, Pilot Projects, Risk Factors, Socioeconomic Factors, Young Adult, Temporomandibular Joint Disorders epidemiology
Abstract

Objective: To analyze the influence of socioeconomic and demographic factors (gender, economic class, age and marital status) on the occurrence of temporomandibular disorder., Study Design: One hundred individuals from urban areas in the city of Recife (Brazil) registered at Family Health Units was examined using Axis I of the Research Diagnostic Criteria for Temporomandibular Disorders (RDC/TMD) which addresses myofascial pain and joint problems (disc displacement, arthralgia, osteoarthritis and oesteoarthrosis). The Brazilian Economic Classification Criteria (CCEB) was used for the collection of socioeconomic and demographic data. Then, it was categorized as Class A (high social class), Classes B/C (middle class) and Classes D/E (very poor social class). The results were analyzed using Pearson's chi-square test for proportions, Fisher's exact test, nonparametric Mann-Whitney test and Binary logistic regression analysis., Results: None of the participants belonged to Class A, 72% belonged to Classes B/C and 28% belonged to Classes D/E. The multivariate analysis revealed that participants from Classes D/E had a 4.35-fold greater chance of exhibiting myofascial pain and 11.3-fold greater chance of exhibiting joint problems., Conclusion: Poverty is a important condition to exhibit myofascial pain and joint problems.

Published
2014
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