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Since the beginning of the COVID-19 pandemic, the demand for unmanned aerial vehicles (UAVs) has surged owing to an increasing requirement of remote, noncontact, and technologically advanced interactions. However, with the increased demand for drones across a wide range of fields, their malicious use has also increased. Therefore, an anti-UAV system is required to detect unauthorized drone use. In this study, we propose a radio frequency (RF) based solution that uses 15 drone controller signals. The proposed method can solve the problems associated with the RF based detection method, which has poor classification accuracy when the distance between the controller and antenna increases or the signal-to-noise ratio (SNR) decreases owing to the presence of a large amount of noise. For the experiment, we changed the SNR of the controller signal by adding white Gaussian noise to SNRs of −15 to 15 dB at 5 dB intervals. A power-based spectrogram image with an applied threshold value was used for convolution neural network training. The proposed model achieved 98% accuracy at an SNR of −15 dB and 99.17% accuracy in the classification of 105 classes with 15 drone controllers within 7 SNR regions. From these results, it was confirmed that the proposed method is both noise-tolerant and scalable.