8 results on '"David Kovář"'
Search Results
2. Rapid Detection of Microorganisms Based on Active and Passive Modes of QCM
- Author
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Zdeněk Farka, David Kovář, and Petr Skládal
- Subjects
Escherichia coli ,immunosensor ,impedance analysis ,label-free detection ,quartz crystal microbalance ,Chemical technology ,TP1-1185 - Abstract
Label-free immunosensors are well suited for detection of microorganisms because of their fast response and reasonable sensitivity comparable to infection doses of common pathogens. Active (lever oscillator and frequency counter) and passive (impedance analyzer) modes of quartz crystal microbalance (QCM) were used and compared for rapid detection of three strains of E. coli. Different approaches for antibody immobilization were compared, the immobilization of reduced antibody using Sulfo‑SMCC was most effective achieving the limit of detection (LOD) 8 × 104 CFU·mL−1 in 10 min. For the passive mode, software evaluating impedance characteristics in real-time was developed and used. Almost the same results were achieved using both active and passive modes confirming that the sensor properties are not limited by the frequency evaluation method but mainly by affinity of the antibody. Furthermore, reference measurements were done using surface plasmon resonance. Effect of condition of cells on signal was observed showing that cells ruptured by ultrasonication provided slightly higher signal changes than intact microbes.
- Published
- 2014
- Full Text
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3. An Ultrasensitive Fluorescence Assay for the Detection of Halides and Enzymatic Dehalogenation
- Author
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Santosh Kumar Padhi, Dominique Böttcher, Tomas Buryska, Uwe T. Bornscheuer, Marko D. Mihovilovic, Clemens Cziegler, Aşkın S. Aslan-Üzel, Andy Beier, Florian Rudroff, Eva Schuiten, Mark Dörr, Christoffel P. S. Badenhorst, David Kovář, Zbyněk Prokop, Jiří Damborský, and Frank Hollmann
- Subjects
haloalkane ,Haloalkane ,Iodide ,Halide ,010402 general chemistry ,01 natural sciences ,Catalysis ,Inorganic Chemistry ,chemistry.chemical_compound ,Bromide ,haloperoxidase ,Haloperoxidase ,Physical and Theoretical Chemistry ,chemistry.chemical_classification ,Detection limit ,Full Paper ,010405 organic chemistry ,Organic Chemistry ,dehalogenase ,Halogenation ,Full Papers ,Combinatorial chemistry ,Orders of magnitude (mass) ,0104 chemical sciences ,3. Good health ,halides ,chemistry ,fluorescence - Abstract
Halide assays are important for the study of enzymatic dehalogenation, a topic of great industrial and scientific importance. Here we describe the development of a very sensitive halide assay that can detect less than a picomole of bromide ions, making it very useful for quantifying enzymatic dehalogenation products. Halides are oxidised under mild conditions using the vanadium‐dependent chloroperoxidase from Curvularia inaequalis, forming hypohalous acids that are detected using aminophenyl fluorescein. The assay is up to three orders of magnitude more sensitive than currently available alternatives, with detection limits of 20 nM for bromide and 1 μM for chloride and iodide. We demonstrate that the assay can be used to determine specific activities of dehalogenases and validate this by comparison to a well‐established GC‐MS method. This new assay will facilitate the identification and characterisation of novel dehalogenases and may also be of interest to those studying other halide‐producing enzymes., How sensitive! A simple, safe, and very sensitive assay for enzymatic dehalogenation is presented. The halides produced by dehalogenases are generally very unreactive and thus hard to detect. We use hydrogen peroxide and a haloperoxidase to activate halides to hypohalous acids, which are easily detected using the sensitive fluorogenic probe aminophenyl fluorescein.
- Published
- 2020
4. Fluorescent pH Indicators for Neutral to Near-Alkaline Conditions Based on 9‑Iminopyronin Derivatives
- Author
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Jiří Damborský, Petr Klán, David Kovář, Peter Horváth, Zbyněk Prokop, and Peter Šebej
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chemistry.chemical_classification ,lcsh:Chemistry ,Chromatography ,Enzyme ,lcsh:QD1-999 ,Chemistry ,General Chemical Engineering ,General Chemistry ,equipment and supplies ,Fluorescence - Abstract
Monitoring enzymatic activities at pH ranges compatible with their physiological optimum using fluorescent assays is important for high-throughput screening and engineering of novel biocatalysts as...
- Published
- 2019
5. Rapid Immunosensing ofSalmonellaTyphimurium Using Electrochemical Impedance Spectroscopy: the Effect of Sample Treatment
- Author
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Tomáš Juřík, Petr Skládal, Karel Lacina, Matěj Pastucha, David Kovář, and Zdeněk Farka
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Salmonella ,Chromatography ,Sonication ,010401 analytical chemistry ,Analytical chemistry ,02 engineering and technology ,021001 nanoscience & nanotechnology ,medicine.disease_cause ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Dielectric spectroscopy ,chemistry.chemical_compound ,chemistry ,Electrode ,Monolayer ,Electrochemistry ,medicine ,Cysteamine ,Glutaraldehyde ,0210 nano-technology ,Biosensor - Abstract
A label-free immunosensor for rapid detection of Salmonella Typhimurium based on electrochemical impedance spectroscopy was developed. Specific antibody was immobilized to a screen-printed electrode via cysteamine monolayer activated with glutaraldehyde and the impedance was measured between two gold electrodes. Different procedures for sample treatment (combinations of heat and sonication) were tested and their impact on the assay performance was compared. Atomic force microscopy was used to study the effect of the treatment on the cell shape and to confirm the specific binding of Salmonella to the sensing surface. The immunosensor allowed detection of 1×10^3 CFU·mL-1 in 20 min with negligible interference from other bacteria. Wide linear response was obtained in the range between 10^3 CFU·mL-1 and 10^8 CFU·mL-1. The successful detection of Salmonella in spiked milk demonstrates the suitability of sensor for the analysis of real samples.
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- 2016
- Full Text
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6. Detection of Aerosolized Biological Agents Using the Piezoelectric Immunosensor
- Author
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Zdeněk Farka, Petr Skládal, and David Kovář
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Aerosols ,Detection limit ,Chromatography ,Chemistry ,Indoor air ,Indoor bioaerosol ,Air Microbiology ,Biosensing Techniques ,Antibodies ,Analytical Chemistry ,Aerosol ,Environmental chemistry ,Aerosol generator ,Escherichia coli ,Quartz Crystal Microbalance Techniques ,Sample collection ,Aerosolization ,Bioaerosol - Abstract
Airborne microorganisms are a major cause of respiratory diseases. Detection of pathogenic bacteria in the form of bioaerosols is required not only in peacetime but also in the threat of biological attacks. The label-free and direct detection of aerosolized biological agents is presented here. A desktop bioaerosol chamber for safe work with aerosolized microbial cells was constructed, and its functionality was tested. The model organisms (Escherichia coli) were disseminated using an aerosol generator in the chamber filled with either common laboratory indoor air or sterile air. The particles from the generated aerosol were collected using the cyclone SASS 2300, suspended in buffer and then analyzed using the piezoelectric immunosensor modified with specific capture antibodies. The frequency shifts indicated presence of the model biological agent with limit of detection of 1.45 × 10(4) CFU·L(-1) of air. The total time from sample collection to detection was 16 min. The system was fully automated and controlled remotely through a local network.
- Published
- 2014
- Full Text
- View/download PDF
7. Zaniklá sídla jako místo paměti českého pohraničí / Abondoned settlements as site of memory of the Czech borderland
- Author
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David Kovařík
- Subjects
abandoned settlements ,migration ,the czech borderland ,collective memory ,20th century ,Ethnology. Social and cultural anthropology ,GN301-674 - Abstract
The paper deals with the issue of post-war abandoned communities and settlements in the Czech borderland and the current form and function of these places in society and in the countryside. The paper will first describe the development of abandonment and demolition of the border settlements in its historical and social context. Most of the extinct settlements in the Czech borderland described were levelled in the first years after World War II or during the reign of the communist regime in Czechoslovakia. Most of these settlements were destroyed because of the displacement of Germans from the Czech lands, as they remained permanently abandoned. Other settlements disappeared due to the establishment of a border zone or military training areas. The study will go on to discuss in more detail the theme of the collective recollection of the extinct border settlements from their former inhabitants, in this case mainly among the displaced Germans from the Czech lands. In the next part of the study, some specific activities to popularize and revive the abandoned settlements that occurred mainly after 1989 and are ongoing to the present day will be documented and critically evaluated directly in specific border regions.
- Published
- 2019
- Full Text
- View/download PDF
8. Extinct Settlements and Their Reflection in the Land-Use Changes and Historical Landscape Elements
- Author
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Veronika Peřinková, Hana Vavrouchová, David Kovařík, Tomáš Mašíček, Antonín Vaishar, and Milada Šťastná
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landscape features ,historic landscape structures ,landscape changes ,Moravia and Silesia ,Agriculture - Abstract
The paper is aimed at the variability of historical landscape elements on the territory of the selected extinct settlements, to classify and to evaluate their development in the context of changes in anthropic pressure between the years 1945 and 2022, focusing on the Moravian-Silesian Region. The article presents a methodology for identifying physically extinct settlements and historical landscape elements by using statistical data, historical and current maps and field verification. Territorial dispersion and classification according to cases of the extinction, and according to individual landscape elements are elaborated. Research has confirmed a link between the cause of the settlement’s demise: the expulsion of German residents and proximity to the state border, a military training area, the construction of water reservoirs, mining and development projects, and surviving groups of historical landscape elements. The results can serve as a methodology for research in other areas. On a practical level, they can be used for landscape planning, territorial dispersion of tourism, and educational purposes.
- Published
- 2022
- Full Text
- View/download PDF
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