140 results on '"Dawei Lin"'
Search Results
2. Device endothelialization and morphology assessments at 1 year using computed tomography angiography: comparison of traditional with novel puncturable atrial septal defect occluders
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Yanxing Fang, Kai Hou, Dawei Lin, Daxin Zhou, Wenzhi Pan, and Junbo Ge
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Atrial septal defect ,Occluder ,CTA ,Endothelialization ,Morphology ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Complete endothelialization is often not achieved within 6 months after implantation of an atrial septal defect (ASD) occluder, which may lead to microthrombus or thrombosis. This study aimed to assess the endothelialization and morphology of a novel puncturable ASD occluder (ReAces) compared with traditional occluders 1 year post-implantation using computed tomography angiography (CTA). Methods Fifteen patients from each group in a randomized controlled trial comparing ReAces with traditional occluders were included at the 1-year follow-up at Zhongshan Hospital, Fudan University. Baseline characteristics and procedural data were recorded. CTA was performed to assess the device morphology and degree of endothelialization. Independent samples t-test and Fisher's exact test were primarily used to compare the above data. Results Each patient received a single device and had no residual shunts. There were no differences in defect size (15.3 ± 4.0 mm vs. 15.3 ± 4.7 mm, p = 1.00) or occluder size (21.2 ± 4.4 mm vs. 21.5 ± 5.3 mm, p = 0.882) between the two groups. At the 1-year follow-up CTA, the central region thickness (4.2 mm ± 0.9 mm vs. 7.8 mm ± 2.4 mm, p
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- 2024
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3. Left atrial appendage closure in a patient previously implanted with an interatrial shunt device: a case report
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Dawei Lin, Mingfei Li, Zilong Weng, Wenzhi Pan, Daxin Zhou, and Junbo Ge
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Left atrial appendage closure (LAAC) ,Interatrial shunt device (IASD) ,FreeFlow® ,LAmbre device ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Patients with previous interatrial shunt device (IASD) implantation may face greater challenges during future left atrial interventional procedures. Herein, we report the first case of left atrial appendage closure (LAAC) in a patient with previous IASD implantation. The patient successfully underwent LAAC using the LAmbre device without complications.
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- 2024
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4. Biomedical Data Repository Concepts and Management Principles
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Dawei Lin, Matthew McAuliffe, Kim D. Pruitt, Anupama Gururaj, Christine Melchior, Charles Schmitt, and Susan N. Wright
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Science - Abstract
Abstract The demand for open data and open science is on the rise, fueled by expectations from the scientific community, calls to increase transparency and reproducibility in research findings, and developments such as the Final Data Management and Sharing Policy from the U.S. National Institutes of Health and a memorandum on increasing public access to federally funded research, issued by the U.S. Office of Science and Technology Policy. This paper explores the pivotal role of data repositories in biomedical research and open science, emphasizing their importance in managing, preserving, and sharing research data. Our objective is to familiarize readers with the functions of data repositories, set expectations for their services, and provide an overview of methods to evaluate their capabilities. The paper serves to introduce fundamental concepts and community-based guiding principles and aims to equip researchers, repository operators, funders, and policymakers with the knowledge to select appropriate repositories for their data management and sharing needs and foster a foundation for the open sharing and preservation of research data.
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- 2024
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5. Identification of the principal neuropeptide MIP and its action pathway in larval settlement of the echiuran worm Urechis unicinctus
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Zhi Yang, Long Zhang, Wenqing Zhang, Xinhua Tian, Wenyuan Lai, Dawei Lin, Yuxin Feng, Wenwen Jiang, Zhengrui Zhang, and Zhifeng Zhang
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Neuropeptide ,MIP ,Larval settlement ,Gene pathway ,Cilia-related genes ,Urechis unicinctus ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Larval settlement and metamorphosis represent critical events in the life history of marine benthic animals. Myoinhibitory peptide (MIP) plays a pivotal role in larval settlement of marine invertebrates. However, the molecular mechanisms of MIP involved in this process are not well understood. Results In this study, we evaluated the effects of thirteen MIP mature peptides on triggering the larval settlement of Urechis unicinctus (Xenopneusta, Urechidae), and determined that MIP2 was the principal neuropeptide. Transcriptomic analysis was employed to identify differentially expressed genes (DEGs) between the MIP2-treated larvae and normal early-segmentation larvae. Both cAMP and calcium signaling pathways were enriched in the DEGs of the MIP2-treated larvae, and two neuropeptide receptor genes (Spr, Fmrfar) were up-regulated in the MIP2-treated larvae. The activation of the SPR-cAMP pathway by MIP2 was experimentally validated in HEK293T cells. Furthermore, fourteen cilia-related genes, including Tctex1d2, Cfap45, Ift43, Ift74, Ift22, Cav1 and Mns1, etc. exhibited down-regulated expression in the MIP2-treated larvae. Whole-mount in situ hybridization identified two selected ciliary genes, Tctex1d2 and Cfap45, were specially expressed in circumoral ciliary cells of the early-segmentation larvae. Knocking down Tctex1d2 mRNA levels by in vivo RNA interference significantly increased the larval settlement rate. Conclusion Our findings suggest that MIP2 inhibits the function of the cilia-related genes, such as Tctex1d2, through the SPR-cAMP-PKA pathway, thereby inducing larval settlement in U. unicinctus. The study contributes important data to the understanding of neuropeptide regulation in larval settlement.
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- 2024
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6. Long-term follow-up in outpatients with mildly elevated pulmonary artery systolic pressure on echocardiography: a single-centre retrospective cohort study in Shanghai, China
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Lei Zhang, Wei Li, Junbo Ge, Wenzhi Pan, Xianhong Shu, Qi Jin, Daxin Zhou, Zilong Weng, Dawei Lin, Lifan Yang, and Yuliang Long
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Medicine - Abstract
Objective To investigate the correlation between mildly elevated pulmonary artery systolic pressure (PASP) on echocardiography and mortality, as well as long-term changes in PASP.Design Retrospective cohort study.Setting Shanghai, China, a single centre.Participants A total of 910 patients were enrolled in this study. From January to June 2016, 1869 patients underwent echocardiography at the Zhongshan Hospital affiliated with Fudan University. Patients with malignant tumours, previous heart or other solid organ transplantation, previous or scheduled ventricular assist device implantation, severe kidney dysfunction (uraemia and patients on dialysis) and a life expectancy of less than 1 year for any medical condition were excluded.Interventions No interventions were done.Primary and secondary outcome measures The predictors of death in patients with mild echocardiographic pulmonary hypertension were analysed using univariate and multivariate Cox regression analyses. Paired t-tests were used to calculate changes in the PASP values at baseline and follow-up for different patient groups.Results The 5-year survival of patients was 93.2%. Patients were grouped according to whether they had combined organic heart disease (OHD). The PASP value was an independent predictor of all-cause mortality in patients with OHD, with each 1 mm Hg increase associated with an HR of 1.02 (95% CI: 1.01–1.03, p=0.038) but not in patients without OHD. Of the total, 46% (419/910) of the patients with 5–6 years of echocardiography were investigated for changes in the PASP value. We found significant PASP reduction in patients without OHD (42.8±2.4 mm Hg vs 39.3±8.2 mm Hg, p
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- 2024
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7. Optimal Methods for Estimating Shortwave and Longwave Radiation to Accurately Calculate Reference Crop Evapotranspiration in the High-Altitude of Central Tibet
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Jiandong Liu, Jun Du, Fei Wang, De Li Liu, Jiahui Tang, Dawei Lin, Yahui Tang, Lijie Shi, and Qiang Yu
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Penman–Monteith model ,radiation estimation ,crop evapotranspiration ,climate change ,water use ,highland barley ,Agriculture - Abstract
The FAO56 Penman–Monteith model (FAO56-PM) is widely used for estimating reference crop evapotranspiration (ET0). However, key variables such as shortwave radiation (Rs) and net longwave radiation (Rln) are often unavailable at most weather stations. While previous studies have focused on calibrating Rs, the influence of large Rln, particularly in high-altitude regions with thin air, remains unexplored. This study investigates this issue by using observed data from Bange in central Tibet to identify the optimal methods for estimating Rs and Rln to accurately calculate ET0. The findings reveal that the average daily Rln was 8.172 MJ m−2 d−1 at Bange, much larger than that at the same latitude. The original FAO56-PM model may produce seemingly accurate ET0 estimates due to compensating errors: underestimated Rln offsetting underestimated net shortwave radiation (Rsn). Merely calibrating Rs does not improve ET0 accuracy but may exacerbate errors. The Liu-S was the empirical model for Rs estimation calibrated by parameterization over the Tibetan Plateau and the Allen-LC was the empirical model for Rln estimation calibrated by local measurements in central Tibet. The combination of the Liu-S and Allen-LC methods showed much-improved performance in ET0 estimation, yielding a high Nash–Sutcliffe Efficiency (NSE) of 0.889 and a low relative error of −5.7%. This strategy is indicated as optimal for ET0 estimation in central Tibet. Trend analysis based on this optimal strategy indicates significant increases in ET0 in central Tibet from 2000 to 2020, with projections suggesting a continued rise through 2100 under climate change scenarios, though with increasing uncertainty over time. However, the rapidly increasing trends in precipitation will lead to decreasing trends in agricultural water use for highland parley production in central Tibet under climate change scenarios. The findings in this study provide critical information for irrigation planning to achieve sustainable agricultural production over the Tibetan Plateau.
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- 2024
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8. A Composite Approach for Evaluating Operational Cloud Seeding Effect in Stratus Clouds
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Fei Wang, Baojun Chen, Zhiguo Yue, Jin Wang, Dejun Li, Dawei Lin, Yahui Tang, and Tian Luan
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non-randomized operational cloud seeding ,precipitation enhancement evaluation ,target area ,stratus cloud ,Science - Abstract
Robust water management is in intense demand in many water scarcity areas, such as arid and semi-arid regions in the world. As part of the regional water management strategy, rain enhancement is vital to replenish groundwater reservoirs, and the key challenge is how to assess its effectiveness. Some recent weather modification experiments attained cloud seeding effect through advanced in situ measurement coupled with accurate numerical simulation. However, there is still a lack of an objective and scientific approach to quantitatively evaluate the rain enhancement effect, especially for many non-randomized operational cloud seeding activities in China. In this study, we proposed a composite evaluation approach by analyzing two operational aircraft cloud seeding cases in stratus clouds in Shaanxi, China. By calculating the aircraft cloud seeding agent plumes, the target areas (as well as the control areas) of cloud seeding were dynamically and roughly determined. Physical properties, such as radar reflectivity and precipitation, were individually quantified in these areas. The cloud seeding effect was then evaluated by calculating the difference in parameter variation between target and control areas. This approach can be applied to qualitative analysis in a single aircraft cloud seeding operation and can also provide quantitative statistical results from multiple cloud seeding cases. We found that the average precipitation enhancement percentage of 18 operational aircraft cloud seeding cases is ~4.84%. Note that the homogeneity hypothesis of the seeding cloud, the error in the calculation of the target area, and the selection of control areas are the major uncertainties likely in the evaluation of the cloud seeding effect by this approach.
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- 2024
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9. Multi‐source heterogeneous iris segmentation method based on lightweight convolutional neural network
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Guang Huo, Dawei Lin, and Meng Yuan
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Photography ,TR1-1050 ,Computer software ,QA76.75-76.765 - Abstract
Abstract Iris segmentation is a critical step in the iris recognition system. Since the quality of iris database taken under different camera sensors varies greatly, thus most existing iris segmentation methods are designed for a particular collection device. Meanwhile, many iris segmentation methods based on convolutional neural networks (CNNs) require a lot of computational costs and hardware costs (storage space), which are not suitable for deploying on low‐performance devices. To address the above problems, an accurate and efficient heterogeneous iris segmentation network is proposed in this paper. First, the authors design an efficient feature extraction network, which combines depth‐wise separable convolution with traditional convolution to greatly reduce model parameters and computational cost while maintaining segmentation accuracy. Then, a Multi‐scale Context Information Extraction Module (MCIEM) is proposed to extract multi‐scale spatial information at a more granular level and enhance the discriminability of the iris region. Finally, a Multi‐layer Feature Information Fusion Module (MFIFM) is proposed to reduce the loss of information during the downsampling process. Experimental results on multi‐source heterogeneous iris database show that the proposed network can not only achieve state‐of‐the‐art performance but is also more efficient in terms of required parameters, calculated load, and storage space.
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- 2023
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10. Transcatheter 'Sandwich' Valve-in-Valve Implantation Technique for Pure Aortic Regurgitation: Operation Skills and Early Experience
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Wenzhi Pan, Dawei Lin, Shasha Chen, Xiaoping Peng, Xiaogang Guo, Daxin Zhou, and Junbo Ge
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Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
No commercial “on-label” transfemoral transcatheter aortic valve replacement (TAVR) device for aortic regurgitation (AR) is available in most countries. TAVR for AR with an “off-label” self-expanding device has shown acceptable procedural success but it elevated rates of early mortality and other complications. Valve disposition or displacement frequently occurs during transfemoral TAVR (TF-TAVR) for AR with a self-expanding valve, because of weak anchoring force. To overcome this problem, we propose a transcatheter “sandwich” valve-in-valve implantation (SVIV) technique, which has achieved good results. Our initial results and experience in a case series comprising seven patients suggest that the SVIV technique using commercially available self-expanding valves may be an option for treating selected patients with AR with high risk for surgical valve replacement. Compared with the traditional method, this technique can decrease the incidence of complications, particularly conduction block, but several technical details require the operator’s attention. Additional research is required to confirm the superiority of this technology.
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- 2024
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11. Noninvasive Monitoring of Severe Pulmonary Artery Hypertension in Atrial Septal Defect Patients: Role of Serum Bilirubin Combined with Uric Acid
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Feng Zhang, Dawei Lin, Qi Jin, Jianing Fan, Dandan Chen, Lihua Guan, Wenzhi Pan, and Daxin Zhou
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severe pulmonary artery hypertension ,atrial septal defect ,bilirubin ,uric acid ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background: Atrial septal defect (ASD) patients commonly experience severe pulmonary arterial hypertension (SPAH), which is frequently associated with a poor prognosis. While serum bilirubin levels, indicative of liver function, are known predictors of right heart failure (RHF), their potential to differentiate SPAH in ASD patients is yet to be ascertained. The purpose of this study was to discover the potential correlations between serum bilirubin levels and ASD patients with SPAH. Methods: In this cross-sectional study, 102 ASD patients admitted from December 2019 to November 2020 were enrolled and divided into two cohorts: those with SPAH and those without. Blood tests were conducted to measure serum direct bilirubin (DBIL), total bilirubin (TBIL), alanine aminotransferase (ALT), aspartate aminotransferase (AST), uric acid (UA) and N-terminal pro B-type natriuretic peptide (NT-proBNP). Additionally, all participants underwent transthoracic echocardiography, and invasive hemodynamic data were gathered through right heart catheterization. Results: ASD patients with SPAH exhibited significantly elevated serum DBIL (5.2 ± 3.0 vs. 2.4 ± 1.5 µmol/L, p < 0.001) and TBIL (24.6 ± 20.7 vs. 10.1 ± 4.8 µmol/L, p < 0.001) levels in comparison to those without SPAH. However, ALT and AST levels remained comparable between the cohorts. Additionally, the SPAH cohort displayed higher serum UA (403.5 ± 131.6 vs. 317.8 ± 67.9 µmol/L, p < 0.001) and NT-proBNP levels. Serum DBIL levels, when analyzed independently of other variables, correlated with an increased risk of mean pulmonary arterial pressure (mPAP) in ASD patients (β = 1.620, p = 0.010). A DBIL concentration of 2.15 mg/dL effectively differentiated ASD patients with SPAH from those without, with a sensitivity of 92.9% and a specificity of 51.4% (area under the curve [AUC]: 0.794, 95% confidence interval [CI]: 0.701–0.886, p < 0.001). Notably, the combination of DBIL and UA had a higher sensitivity of 92.9% and specificity of 71.6% (AUC: 0.874, 95% CI: 0.799–0.949, p < 0.001). Conclusions: Elevated serum DBIL and TBIL levels in ASD patients with SPAH were correlated with poor cardiac function and heightened pulmonary artery pressure. The combination of DBIL and UA has emerged as a strong noninvasive predictor for SPAH in ASD patients, presenting a potentially novel therapeutic biomarker.
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- 2024
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12. Ectopic adrenocortical nodular hyperplasia mimicking an upper-pole renal-cell carcinoma: A case report
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Dawei Lin, Jiaxuan Qin, and Jinchun Xing
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Ectopic adrenocortical nodular hyperplasia ,Renal cell carcinoma ,Case report ,Differential diagnosis ,Surgery ,RD1-811 - Published
- 2023
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13. Medical Management of Pulmonary Arterial Hypertension: Current Approaches and Investigational Drugs
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Qi Jin, Dandan Chen, Xiaochun Zhang, Feng Zhang, Dongxiang Zhong, Dawei Lin, Lihua Guan, Wenzhi Pan, Daxin Zhou, and Junbo Ge
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pulmonary arterial hypertension ,medical management ,endothelin pathway ,nitric oxide pathway ,prostacyclin pathway ,targeted agents ,Pharmacy and materia medica ,RS1-441 - Abstract
Pulmonary arterial hypertension (PAH) is a malignant pulmonary vascular syndrome characterized by a progressive increase in pulmonary vascular resistance and pulmonary arterial pressure, which eventually leads to right heart failure and even death. Although the exact mechanism of PAH is not fully understood, pulmonary vasoconstriction, vascular remodeling, immune and inflammatory responses, and thrombosis are thought to be involved in the development and progression of PAH. In the era of non-targeted agents, PAH had a very dismal prognosis with a median survival time of only 2.8 years. With the deep understanding of the pathophysiological mechanism of PAH as well as advances in drug research, PAH-specific therapeutic drugs have developed rapidly in the past 30 years, but they primarily focus on the three classical signaling pathways, namely the endothelin pathway, nitric oxide pathway, and prostacyclin pathway. These drugs dramatically improved pulmonary hemodynamics, cardiac function, exercise tolerance, quality of life, and prognosis in PAH patients, but could only reduce pulmonary arterial pressure and right ventricular afterload to a limited extent. Current targeted agents delay the progression of PAH but cannot fundamentally reverse pulmonary vascular remodeling. Through unremitting efforts, new therapeutic drugs such as sotatercept have emerged, injecting new vitality into this field. This review comprehensively summarizes the general treatments for PAH, including inotropes and vasopressors, diuretics, anticoagulants, general vasodilators, and anemia management. Additionally, this review elaborates the pharmacological properties and recent research progress of twelve specific drugs targeting three classical signaling pathways, as well as dual-, sequential triple-, and initial triple-therapy strategies based on the aforementioned targeted agents. More crucially, the search for novel therapeutic targets for PAH has never stopped, with great progress in recent years, and this review outlines the potential PAH therapeutic agents currently in the exploratory stage to provide new directions for the treatment of PAH and improve the long-term prognosis of PAH patients.
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- 2023
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14. Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group [version 2; peer review: 1 approved, 2 approved with reservations]
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Claire C. Austin, Alexander Bernier, Louise Bezuidenhout, Juan Bicarregui, Timea Biro, Anne Cambon-Thomsen, Stephanie Russo Carroll, Zoe Cournia, Piotr Wojciech Dabrowski, Gayo Diallo, Thomas Duflot, Leyla Garcia, Sandra Gesing, Alejandra Gonzalez-Beltran, Anupama Gururaj, Natalie Harrower, Dawei Lin, Claudia Medeiros, Eva Méndez, Natalie Meyers, Daniel Mietchen, Rajini Nagrani, Gustav Nilsonne, Simon Parker, Brian Pickering, Amy Pienta, Panayiota Polydoratou, Fotis Psomopoulos, Stephanie Rennes, Robyn Rowe, Susanna-Assunta Sansone, Hugh Shanahan, Lina Sitz, Joanne Stocks, Marcos Roberto Tovani-Palone, Mary Uhlmansiek, and Research Data Alliance
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Medicine ,Science - Abstract
The systemic challenges of the COVID-19 pandemic require cross-disciplinary collaboration in a global and timely fashion. Such collaboration needs open research practices and the sharing of research outputs, such as data and code, thereby facilitating research and research reproducibility and timely collaboration beyond borders. The Research Data Alliance COVID-19 Working Group recently published a set of recommendations and guidelines on data sharing and related best practices for COVID-19 research. These guidelines include recommendations for clinicians, researchers, policy- and decision-makers, funders, publishers, public health experts, disaster preparedness and response experts, infrastructure providers from the perspective of different domains (Clinical Medicine, Omics, Epidemiology, Social Sciences, Community Participation, Indigenous Peoples, Research Software, Legal and Ethical Considerations), and other potential users. These guidelines include recommendations for researchers, policymakers, funders, publishers and infrastructure providers from the perspective of different domains (Clinical Medicine, Omics, Epidemiology, Social Sciences, Community Participation, Indigenous Peoples, Research Software, Legal and Ethical Considerations). Several overarching themes have emerged from this document such as the need to balance the creation of data adherent to FAIR principles (findable, accessible, interoperable and reusable), with the need for quick data release; the use of trustworthy research data repositories; the use of well-annotated data with meaningful metadata; and practices of documenting methods and software. The resulting document marks an unprecedented cross-disciplinary, cross-sectoral, and cross-jurisdictional effort authored by over 160 experts from around the globe. This letter summarises key points of the Recommendations and Guidelines, highlights the relevant findings, shines a spotlight on the process, and suggests how these developments can be leveraged by the wider scientific community.
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- 2021
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15. Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group [version 1; peer review: 1 approved, 2 approved with reservations]
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Claire C. Austin, Alexander Bernier, Louise Bezuidenhout, Juan Bicarregui, Timea Biro, Anne Cambon-Thomsen, Stephanie Russo Carroll, Zoe Cournia, Piotr Wojciech Dabrowski, Gayo Diallo, Thomas Duflot, Leyla Garcia, Sandra Gesing, Alejandra Gonzalez-Beltran, Anupama Gururaj, Natalie Harrower, Dawei Lin, Claudia Medeiros, Eva Méndez, Natalie Meyers, Daniel Mietchen, Rajini Nagrani, Gustav Nilsonne, Simon Parker, Brian Pickering, Amy Pienta, Panayiota Polydoratou, Fotis Psomopoulos, Stephanie Rennes, Robyn Rowe, Susanna-Assunta Sansone, Hugh Shanahan, Lina Sitz, Joanne Stocks, Marcos Roberto Tovani-Palone, Mary Uhlmansiek, and Research Data Alliance
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Medicine ,Science - Abstract
The systemic challenges of the COVID-19 pandemic require cross-disciplinary collaboration in a global and timely fashion. Such collaboration needs open research practices and the sharing of research outputs, such as data and code, thereby facilitating research and research reproducibility and timely collaboration beyond borders. The Research Data Alliance COVID-19 Working Group recently published a set of recommendations and guidelines on data sharing and related best practices for COVID-19 research. These guidelines include recommendations for researchers, policymakers, funders, publishers and infrastructure providers from the perspective of different domains (Clinical Medicine, Omics, Epidemiology, Social Sciences, Community Participation, Indigenous Peoples, Research Software, Legal and Ethical Considerations). Several overarching themes have emerged from this document such as the need to balance the creation of data adherent to FAIR principles (findable, accessible, interoperable and reusable), with the need for quick data release; the use of trustworthy research data repositories; the use of well-annotated data with meaningful metadata; and practices of documenting methods and software. The resulting document marks an unprecedented cross-disciplinary, cross-sectoral, and cross-jurisdictional effort authored by over 160 experts from around the globe. This letter summarises key points of the Recommendations and Guidelines, highlights the relevant findings, shines a spotlight on the process, and suggests how these developments can be leveraged by the wider scientific community.
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- 2020
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16. Assimilation of Ground-Based Microwave Radiometer on Heavy Rainfall Forecast in Beijing
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Yajie Qi, Shuiyong Fan, Bai Li, Jiajia Mao, and Dawei Lin
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heavy rainfall ,ground-based microwave radiometer ,heat island effect ,Meteorology. Climatology ,QC851-999 - Abstract
Ground-based microwave radiometers (MWRPS) can provide continuous atmospheric temperature and relative humidity profiles for a weather prediction model. We investigated the impact of assimilation of ground-based microwave radiometers based on the rapid-refresh multiscale analysis and prediction system-short term (RMAPS-ST). In this study, five MWRP-retrieved profiles were assimilated for the precipitation enhancement that occurred in Beijing on 21 May 2020. To evaluate the influence of their assimilation, two experiments with and without the MWRPS assimilation were set. Compared to the control experiment, which only assimilated conventional observations and radar data, the MWRPS experiment, which assimilated conventional observations, the ground-based microwave radiometer profiles and the radar data, had a positive impact on the forecasts of the RMAPS-ST. The results show that in comparison with the control test, the MWRPS experiment reproduced the heat island phenomenon in the observation better. The MWRPS assimilation reduced the bias and RMSE of two-meter temperature and two-meter specific humidity forecasting in the 0–12 h of the forecast range. Furthermore, assimilating the MWRPS improved both the distribution and the intensity of the hourly rainfall forecast, as compared with that of the control experiment, with observations that predicted the process of the precipitation enhancement in the urban area of Beijing.
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- 2021
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17. An Eddy Current-Based Structural Health Monitoring Technique for Tracking Bolt Cracking
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Hu Sun, Tao Wang, Dawei Lin, Yishou Wang, and Xinlin Qing
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bolt cracking ,eddy current ,sensing film ,bolted joints ,structural health monitoring ,Chemical technology ,TP1-1185 - Abstract
Bolted joints are the primary structures for the load transfer of large-scale structures. It is vital to monitor the process of bolt cracking for enduring structural safety. In this paper, a structural health monitoring technique based on the embedding eddy current sensing film has been proposed to quantify the crack parameters of bolt cracking. Two configurations of the sensing film containing one-dimensional circumferential coil array and two-dimensional coil array are designed and verified to have the ability to identify three crack parameters: the crack angle, the crack depth, and the crack location in the axial direction of the bolt. The finite element method has been employed not only to verify the capacity of the sensing film, but also to investigate the interaction between the crack and the eddy current/magnetic field. It has been demonstrated that as the crack propagates, the variations of the induced voltage of the sensing coils are influenced by both eddy current effect and magnetic flux leakage, which play different roles in the different periods of the crack propagation. Experiments have been performed to verify the effectiveness and feasibility of the sensing film to quantify three crack parameters in the process of the bolt cracking.
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- 2020
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18. Transcriptome profiling of citrus fruit response to huanglongbing disease.
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Federico Martinelli, Sandra L Uratsu, Ute Albrecht, Russell L Reagan, My L Phu, Monica Britton, Vincent Buffalo, Joseph Fass, Elizabeth Leicht, Weixiang Zhao, Dawei Lin, Raissa D'Souza, Cristina E Davis, Kim D Bowman, and Abhaya M Dandekar
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Medicine ,Science - Abstract
Huanglongbing (HLB) or "citrus greening" is the most destructive citrus disease worldwide. In this work, we studied host responses of citrus to infection with Candidatus Liberibacter asiaticus (CaLas) using next-generation sequencing technologies. A deep mRNA profile was obtained from peel of healthy and HLB-affected fruit. It was followed by pathway and protein-protein network analysis and quantitative real time PCR analysis of highly regulated genes. We identified differentially regulated pathways and constructed networks that provide a deep insight into the metabolism of affected fruit. Data mining revealed that HLB enhanced transcription of genes involved in the light reactions of photosynthesis and in ATP synthesis. Activation of protein degradation and misfolding processes were observed at the transcriptomic level. Transcripts for heat shock proteins were down-regulated at all disease stages, resulting in further protein misfolding. HLB strongly affected pathways involved in source-sink communication, including sucrose and starch metabolism and hormone synthesis and signaling. Transcription of several genes involved in the synthesis and signal transduction of cytokinins and gibberellins was repressed while that of genes involved in ethylene pathways was induced. CaLas infection triggered a response via both the salicylic acid and jasmonic acid pathways and increased the transcript abundance of several members of the WRKY family of transcription factors. Findings focused on the fruit provide valuable insight to understanding the mechanisms of the HLB-induced fruit disorder and eventually developing methods based on small molecule applications to mitigate its devastating effects on fruit production.
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- 2012
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19. Mitochondrial DNA variant discovery and evaluation in human Cardiomyopathies through next-generation sequencing.
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Michael V Zaragoza, Joseph Fass, Marta Diegoli, Dawei Lin, and Eloisa Arbustini
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Medicine ,Science - Abstract
Mutations in mitochondrial DNA (mtDNA) may cause maternally-inherited cardiomyopathy and heart failure. In homoplasmy all mtDNA copies contain the mutation. In heteroplasmy there is a mixture of normal and mutant copies of mtDNA. The clinical phenotype of an affected individual depends on the type of genetic defect and the ratios of mutant and normal mtDNA in affected tissues. We aimed at determining the sensitivity of next-generation sequencing compared to Sanger sequencing for mutation detection in patients with mitochondrial cardiomyopathy. We studied 18 patients with mitochondrial cardiomyopathy and two with suspected mitochondrial disease. We "shotgun" sequenced PCR-amplified mtDNA and multiplexed using a single run on Roche's 454 Genome Sequencer. By mapping to the reference sequence, we obtained 1,300x average coverage per case and identified high-confidence variants. By comparing these to >400 mtDNA substitution variants detected by Sanger, we found 98% concordance in variant detection. Simulation studies showed that >95% of the homoplasmic variants were detected at a minimum sequence coverage of 20x while heteroplasmic variants required >200x coverage. Several Sanger "misses" were detected by 454 sequencing. These included the novel heteroplasmic 7501T>C in tRNA serine 1 in a patient with sudden cardiac death. These results support a potential role of next-generation sequencing in the discovery of novel mtDNA variants with heteroplasmy below the level reliably detected with Sanger sequencing. We hope that this will assist in the identification of mtDNA mutations and key genetic determinants for cardiomyopathy and mitochondrial disease.
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- 2010
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20. MamuSNP: a resource for Rhesus Macaque (Macaca mulatta) genomics.
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Ripan S Malhi, Brad Sickler, Dawei Lin, Jessica Satkoski, Raul Y Tito, Debbie George, Sreetharan Kanthaswamy, and David Glenn Smith
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Medicine ,Science - Abstract
We developed a novel method for identifying SNPs widely distributed throughout the coding and non-coding regions of a genome. The method uses large-scale parallel pyrosequencing technology in combination with bioinformatics tools. We used this method to generate approximately 23,000 candidate SNPs throughout the Macaca mulatta genome. We estimate that over 60% of the SNPs will be of high frequency and useful for mapping QTLs, genetic management, and studies of individual relatedness, whereas other less frequent SNPs may be useful as population specific markers for ancestry identification. We have created a web resource called MamuSNP to view the SNPs and associated information online. This resource will also be useful for researchers using a wide variety of Macaca species in their research.
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- 2007
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21. Temporal-Gated Graph Neural Network with Graph Sampling for Multi-step Attack Detection.
- Author
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Shuyu Chen, Dawei Lin, Zhenping Xie, and Hongbo Wang
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- 2023
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22. Ten Pillars for Data Meshes.
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Robert L. Grossman, Ceilyn Boyd, Nhan V. Do, Danne C. Elbers, Michael Sean Fitzsimons, Maryellen L. Giger, Anthony Juehne, Brienna Larrick, Jerry S. H. Lee, Dawei Lin, Michael Lukowski, James D. Myers, Philip Schumm, and Aarti Venkat
- Published
- 2024
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23. From SATD Recognition to an Interpretation Method Based on the Dataset.
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Yuan Meng, Tie Bao, and Dawei Lin
- Published
- 2023
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24. Cyber threat indicators extraction based on contextual knowledge prompt.
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Hailiang Tang, Dawei Lin, Wanyu Li, Wenxiao Zhang, and Jun Zhao
- Published
- 2024
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25. Iris segmentation method based on improved UNet++.
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Guang Huo, Dawei Lin, and Meng Yuan
- Published
- 2022
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26. Visualization of Convolutional Neural Networks with Attention Mechanism.
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Meng Yuan, Tie Bao, and Dawei Lin
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- 2021
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27. Lightweight iris segmentation network for low-power devices.
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Guang Huo, Dawei Lin, Di Gai, Meng Yuan, and Tianpeng Pei
- Published
- 2022
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28. Real-time iris segmentation model based on lightweight convolutional neural network.
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Guang Huo, Dawei Lin, Yuanning Liu, Xiaodong Zhu 0001, and Meng Yuan
- Published
- 2022
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29. Consistent evaluation of trustworthiness across guiding principles and standards is crucial to ensure a robust digital repository ecosystem.
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David Giaretta, John Garrett, Iolanda Maggio, Mark Conrad, J. Steven Hughes, Terry Longstreth, Roberta Svanetti, Dawei Lin, Robert R. Downs, Felix Engel 0002, and Matthias L. Hemmje
- Published
- 2021
30. Heterogeneous iris segmentation method based on modified U-Net.
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Guang Huo, Dawei Lin, Meng Yuan, Zhiqiang Yang, and Yueqi Niu
- Published
- 2021
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31. From SATD Recognition to an Interpretation Method Based on the Dataset
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Yuan Meng, Bao Tie, and Dawei Lin
- Subjects
Artificial Intelligence ,Computer Networks and Communications ,Computer Graphics and Computer-Aided Design ,Software - Abstract
Technical debt describes a trade-off between short-term goals and long-term code quality during software development. Self-admitted technical debt (SATD), a type of technical debt, is intentionally introduced by developers. The existence of SATD is likely to leave hidden dangers for future changes in software systems, so identifying SATD is an essential task. Before this, many methods for recognizing SATD (such as pattern matching-based, natural language processing-based, text mining-based, etc.) have been proposed. This paper will present a pre-trained deep learning model to complete the SATD recognition task. An efficient deep learning model interpretation tool Captum can be used to understand the experimental results. At the same time, a new interpretation view is proposed for the matching-based model. Finally, combined with the research in this paper, reasonable suggestions are put forward for future SATD recognition tasks.
- Published
- 2022
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32. Identification and expression pattern of three sex-related genes in the shrimp Neocaridina denticulata sinensis (Decapoda, Caridea)
- Author
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Dawei Lin, Moran Wang, Feifei Yu, Wenhui Shi, Fuli Luo, Chao Wu, Jingwen Yang, and Wenming Ma
- Subjects
Animal Science and Zoology ,Aquatic Science - Abstract
The sex determination and differentiation process of economically important crustaceans have been regarded as the focus of aquaculture for a long time, because of the sex-related weight differences. Neocaridina denticulata sinensis makes a suitable animal model for studying crustaceans because it can reproduce many times under artificial control and has a short reproductive cycle. Male and female sex characteristics of the adult rice shrimp Neocaridina d. sinensis are morphologically obvious, but not in embryos and juvenile stages. At present, sex-specific DNA markers have not yet been developed. To produce a reliable molecular marker for sex in Neocaridina and to investigate molecular sex differentiation, we therefore focused on identifying sex-specific transcriptomic differences. In this study, we found three sex-specific expression genes, NDM, Sushi, and NDF, after screening a large number of transcriptome data. NDM and Sushi are male-specific expression genes, and NDF is a female-specific expression gene. Semi-quantitative RT-PCR analysis showed that NDM and NDF can act as molecular markers for the sex identification of Neocaridina in different developmental stages, especially sex identification for embryos and juveniles with the same morphological characteristics. However, Sushi can only act as a molecular marker for the sex identification of Neocaridina in adult stages. Furthermore, in situ hybridization showed that a strong positive signal of NDM was detected in the male testis. At the same time, we explored the relationship between these three genes and sex differentiation. The results of RNA interference treatment show that knockdown of nd-IAG (Neocaridina denticulata sinensis insulin-like androgenic gland hormone) can change the expression of NDM and NDF. On the basis of the expression of the male-specific gene NDM and the female-specific gene NDF, we developed a molecular test that for the first time allows the unambiguous sex determination of Neocaridina samples lacking external sex-specific features from juvenile stages onward.
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- 2022
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33. Redclaw Crayfish Cherax quadricarinatus LRPPRC : The characterization of a sex‐linked gene and its relationship with vitellogenin
- Author
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Dawei Lin, Yongjun Guo, Yongzhen Zhao, Ran Li, Wenming Ma, Jingfeng Sun, Fuli Luo, Kui Meng, Jingwen Yang, Chao Wu, Ruilin Hong, Xiang Wang, Moran Wang, and Limei Chen
- Subjects
Aquatic Science - Published
- 2022
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34. PCSK9 Inhibition Regulates Infarction-Induced Cardiac Myofibroblast Transdifferentiation via Notch1 Signaling
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Chen Wu, Dawei Lin, Jian Ji, Yiweng Jiang, Feng Jiang, and Yaosheng Wang
- Subjects
Biophysics ,Cell Biology ,General Medicine ,Biochemistry - Published
- 2023
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- View/download PDF
35. On the Two Successive Supercold Waves Straddling the End of 2020 and the Beginning of 2021
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Cholaw Bueh, Dawei Lin, Jingbei Peng, and Bomin Chen
- Subjects
Siberian High ,Atmospheric Science ,Paleontology ,Intrusion ,Polar vortex ,Ridge (meteorology) ,Cold air ,Cold wave ,Trough (meteorology) ,Geology ,The arctic - Abstract
Two supercold waves straddling 2020 and 2021 successively hit China and caused record-breaking extremely low temperatures. In this study, the distinct features of these two supercold waves are analyzed on the medium-range time scale. The blocking pattern from the Kara Sea to Lake Baikal characterized the first cold wave, while the large-scale tilted ridge and trough over the Asian continent featured the second cold wave. Prior to the cold waves, both the northwest and hyperpolar paths of cold air contributed to a zonally extensive cold air accumulation in the key region of Siberia. This might be the primary reason why strong and extensive supercold waves occur even under the Arctic amplification background. The two cold waves straddling 2020 and 2021 exhibited distinct features: (1) the blocking circulation occurred to the north or the east of the Ural Mountains and was not confined only to the Ural Mountains as it was for the earlier cold waves; (2) the collocation of the Asian blocking pattern and the polar vortex deflection towards East Asia preferred the hyperpolar path of cold air accumulation and the subsequent southward outburst; and (3) both high- and low-frequency processes worked in concert, leading to the very intense cold waves. The cold air advance along the northwest path, which coincides with the southeastward intrusion of the Siberian High (SH) front edge, is associated with the high-frequency process, while the cold air movement along the hyperpolar path, which is close to the eastern edge of the SH, is controlled by the low-frequency process.
- Published
- 2022
- Full Text
- View/download PDF
36. Association of angiotensin-converting enzyme inhibitors or angiotensin II receptor antagonists use with risk of atrial fibrillation after pacemaker implantation among very old patients
- Author
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Dawei, Lin, Chen, Wu, Yiwen, Jiang, Yigang, Li, Xi, Zhang, and Yaosheng, Wang
- Subjects
Aged, 80 and over ,Angiotensin Receptor Antagonists ,Pacemaker, Artificial ,Health (social science) ,Atrial Fibrillation ,Humans ,Angiotensin-Converting Enzyme Inhibitors ,Angiotensin II Type 2 Receptor Blockers ,General Medicine ,General Biochemistry, Genetics and Molecular Biology - Abstract
It remains unknown whether and to what extend the angiotensin-converting enzyme inhibitors (ACEIs) or angiotensin receptor blockers (ARBs) can play a role in the development of atrial fibrillation (AF) after pacemaker implantation in very old patients. Therefore, we aimed to investigate the association between oral ACEIs or ARBs and the risk of developing AF in very old patients after pacemaker implantation. Patients above 80 years old with pacemaker implantation and without baseline history of AF were included and their real-world information about ACEIs or ARBs use was extracted from electronic medical records. New AF cases were confirmed via the records of outpatient visits. The multivariable Cox proportional-hazards model was used to evaluate the associations between oral ACEIs or ARBs and risk of AF after pacemaker implantation. Among a total of 388 identified patients aged 80 to 98 years, 118 used ACEIs, 174 had ARBs therapy, and 115 AF were identified after pacemaker implantation during a median follow-up time of 3.1 years. After adjustment for potential confounders, patients with daily use of ARBs had a relatively lower risk of AF after pacemaker implantation (HR: 0.627, 95% CI: 0.425, 0.926; P = 0.019) compared with those non-users, whereas ACEIs therapy didn't show a significant relation with AF risk (HR: 1.335, 95% CI: 0.894, 1.995; P = 0.157). In conclusion, for very old patients with a permanent pacemaker, daily use of oral ARBs was associated with a relative lower risk of AF after pacemaker implantation, however, daily use of ACEIs was not related with AF risk.
- Published
- 2021
- Full Text
- View/download PDF
37. Have existing theories explained the accrual anomaly? An evaluation based on the decomposition method
- Author
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Zhi‐an Hu, Zhuo Huang, Dawei Lin, and Zhimin Qiu
- Subjects
Accounting ,Economics, Econometrics and Finance (miscellaneous) ,Finance - Published
- 2021
- Full Text
- View/download PDF
38. Grey relation analysis on fuzzy fault tree of disk brake.
- Author
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Dezhong Ma, Yongqing Jang, Zhen Zhou, Tonghui Zhao, and Dawei Lin
- Published
- 2011
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39. Neuregulin-1β Alleviates Sepsis-Induced Skeletal Muscle Atrophy by Inhibiting Autophagy via AKT/mTOR Signaling Pathway in Rats
- Author
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Yunbin Xie, Peng Jiang, Dawei Lin, Jin Wu, Aihua Gong, and Dandan Yin
- Subjects
Male ,medicine.medical_specialty ,Neuregulin-1 ,Muscle Fibers, Skeletal ,Cell Culture Techniques ,Protein degradation ,Critical Care and Intensive Care Medicine ,Rats, Sprague-Dawley ,Atrophy ,Sepsis ,Internal medicine ,Autophagy ,medicine ,Animals ,Myocyte ,Protein kinase B ,PI3K/AKT/mTOR pathway ,Myogenesis ,Akt/PKB signaling pathway ,Chemistry ,TOR Serine-Threonine Kinases ,medicine.disease ,Rats ,Muscular Atrophy ,Endocrinology ,Emergency Medicine ,Proto-Oncogene Proteins c-akt ,Signal Transduction - Abstract
Several studies have shown that excessive protein degradation is a major cause of skeletal muscle atrophy induced by sepsis, and autophagy is the main pathway participating in protein degradation. However, the role of autophagy in sepsis is still controversial. Previously, we found that neuregulin-1β (NRG-1β) alleviated sepsis-induced diaphragm atrophy through the phosphatidylinositol-3 kinase signaling pathway. Akt/mechanistic target of rapamycin (mTOR) is a classic signaling pathway to regulate autophagy, which maintains intracellular homeostasis. This study aimed to investigate whether NRG-1β could alleviate sepsis-induced skeletal muscle atrophy by regulating autophagy.L6 rat myoblast cells were differentiated using 2% fetal bovine serum into myotubes, which were divided into four groups: Con group treated with normal serum; Sep group treated with septic serum to form a sepsis cell model; septic serum + NRG-1β (SN) group treated with septic serum for 24 h followed by injection with NRG-1β and incubation for another 48 h; and serum+NRG-1β+LY294002 group, in which the PI3K inhibitor LY294002 was added 30 min before NRG-1β, and other treatments were similar to those in SN group. Effects of NRG-1β were also evaluated in vivo using Sprague-Dawley (SD) rats, in which sepsis was induced by cecal ligation and puncture (CLP).In L6 myotubes treated with septic serum, the expression of autophagy-related proteins UNC-51 like kinase 1, p-Beclin-1, and Beclin-1, and the ratio of LC3B II/I were highly increased, while protein p62 expression was decreased, indicating that autophagy was excessively activated. Moreover, NRG-1 expression was decreased, as detected by confocal immunofluorescence and western blotting. Upon exogenous addition of NRG-1β, autophagy was inhibited by the activation of Akt/mTOR signaling pathway, and cell viability was also increased. These effects disappeared in the presence of LY294002. In SD rats, sepsis was induced by CLP. NRG-1β was shown to inhibit autophagy in these rats via the Akt/mTOR pathway, leading to increased body weight of the septic SD rats and alleviation of atrophy of the tibialis anterior muscle.NRG-1β could alleviate sepsis-induced skeletal muscle atrophy by inhibiting autophagy via the AKT/mTOR signaling pathway.
- Published
- 2021
- Full Text
- View/download PDF
40. Pedestrian Dead Reckoning and WIFI Fusion Positioning Based on Chaotic Particle Swarm Optimization
- Author
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Dawei Lin, Jie Dong, Zhibin Zang, Ruihao Cong, Zhihan Liang, and Jianjun Chen
- Published
- 2022
- Full Text
- View/download PDF
41. Next Generation Microarray Bioinformatics: Methods and Protocols. Edited by Junbai Wang, Aik Choon Tan and Tianhai Tian.
- Author
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Dawei Lin
- Published
- 2015
- Full Text
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42. A transcatheter "sandwich" valve-in-valve implantation for pure aortic regurgitation: a report of 2 cases.
- Author
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Shasha Chen, Dawei Lin, Yiming Qi, Daxin Zhou, Wenzhi Pan, and Junbo Ge
- Published
- 2023
- Full Text
- View/download PDF
43. Exploration and Application of Information Technology in Quality Control over the Development of Spacecraft
- Author
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Dongqi Chu, Yu Zhang, Dawei Lin, Ming Shan, Jingjing Zhao, and Yuxue Qiu
- Published
- 2022
- Full Text
- View/download PDF
44. Evaluating the accrual anomaly in the Chinese stock market with the decomposition method
- Author
-
Dawei Lin, Zhuo Huang, and Zhimin Qiu
- Subjects
Cultural Studies ,Sociology and Political Science ,Accrual ,050204 development studies ,05 social sciences ,Market efficiency ,0502 economics and business ,Economics ,Econometrics ,Capital asset pricing model ,Stock market ,Decomposition method (constraint satisfaction) ,050207 economics ,Anomaly (physics) ,General Economics, Econometrics and Finance - Abstract
We evaluate the explanations for accrual anomaly in the Chinese stock market using the decomposition method. The results show that institutional ownership best explains the accrual anomaly with an ...
- Published
- 2020
- Full Text
- View/download PDF
45. Microhomology-based CRISPR tagging tools for protein tracking, purification, and depletion
- Author
-
Peter K. Kaiser, Benjamin P. Chung, Xiaorong Wang, Lan Huang, Dawei Lin, and Jia-Wei Huang
- Subjects
0301 basic medicine ,Biochemistry & Molecular Biology ,DNA End-Joining Repair ,Fluorescent Antibody Technique ,Computational biology ,Biology ,Protein degradation ,Protein Engineering ,Medical and Health Sciences ,Biochemistry ,epitope tagging ,03 medical and health sciences ,CRISPR/Cas ,Genome editing ,protein purification ,AID ,Animals ,Humans ,CRISPR ,Clustered Regularly Interspaced Short Palindromic Repeats ,Molecular Biology ,Fluorescent Dyes ,Gene Editing ,030102 biochemistry & molecular biology ,Cas9 ,Methods and Resources ,Cas ,microhomology ,Cell Biology ,Protein engineering ,Biological Sciences ,HEK293 Cells ,030104 developmental biology ,Chemical Sciences ,Proteome ,gene expression ,protein degradation ,Generic health relevance ,CRISPR-Cas Systems ,Degron ,auxin ,mCherry ,Biotechnology - Abstract
Work in yeast models has benefitted tremendously from the insertion of epitope or fluorescence tags at the native gene locus to study protein function and behavior under physiological conditions. In contrast, work in mammalian cells largely relies on overexpression of tagged proteins because high-quality antibodies are only available for a fraction of the mammalian proteome. CRISPR/Cas9-mediated genome editing has recently emerged as a powerful genome-modifying tool that can also be exploited to insert various tags and fluorophores at gene loci to study the physiological behavior of proteins in most organisms, including mammals. Here we describe a versatile toolset for rapid tagging of endogenous proteins. The strategy utilizes CRISPR/Cas9 and microhomology-mediated end joining repair for efficient tagging. We provide tools to insert 3×HA, His(6)FLAG, His(6)-Biotin-TEV-RGSHis(6), mCherry, GFP, and the auxin-inducible degron tag for compound-induced protein depletion. This approach and the developed tools should greatly facilitate functional analysis of proteins in their native environment.
- Published
- 2019
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46. Identification and expression pattern of the sex determination gene fruitless-like in Cherax quadricarinatus
- Author
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Dawei Lin, Yongjun Guo, Xiuli Chen, Huizan Yang, Qiangyong Li, Qingyun Liu, Fuli Luo, Kui Meng, Songting Yang, Xinquan Cheng, Wenming Ma, Xiaohan Chen, Moran Wang, and Yongzhen Zhao
- Subjects
Male ,Sex Characteristics ,Drosophila melanogaster ,Physiology ,Animals ,Drosophila Proteins ,Female ,Nerve Tissue Proteins ,Astacoidea ,Sex Determination Processes ,Molecular Biology ,Biochemistry ,Transcription Factors - Abstract
The fruitless (fru) gene has an important function in the courtship behavior and sex determination pathway of Drosophila melanogaster; however, the fru gene has never been reported in shrimps. In this study, the fruitless-like gene was identified in Cherax quadricarinatus (Cqfru) and is reported here for the first time. A sequence analysis revealed a conserved BTB domain in Cqfru which is the same as fru in D. melanogaster. An analysis of the expression level of Cqfru showed that it was highly expressed in the gastrula stage during embryonic development. Furthermore, in situ hybridization and expression distribution in tissues showed that its sexually dimorphic expression may be focused on the hepatopancreas, brains, and gonads. The gonads, brains, and hepatopancreas of males had a higher expression level of Cqfru than those of females; however, the expression level of the abdominal ganglion was found to be higher in females than in males in this study. The results of an RNA interference treatment showed that a knockdown of Cqfru reduced the expression of the insulin-like androgenic gland hormone (IAG) and tumor necrosis factor (TNF). The characteristic fru gene in shrimps is reported here for the first time, with the results providing basic information for research into the sex-determination mechanism in C. quadricarinatus.
- Published
- 2021
47. An Eddy Current-Based Structural Health Monitoring Technique for Tracking Bolt Cracking
- Author
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Xinlin Qing, Dawei Lin, Hu Sun, Tao Wang, and Yishou Wang
- Subjects
Materials science ,sensing film ,02 engineering and technology ,lcsh:Chemical technology ,Biochemistry ,Article ,eddy current ,Analytical Chemistry ,law.invention ,0203 mechanical engineering ,law ,Eddy current ,lcsh:TP1-1185 ,Electrical and Electronic Engineering ,Instrumentation ,structural health monitoring ,business.industry ,Magnetic flux leakage ,Fracture mechanics ,Structural engineering ,021001 nanoscience & nanotechnology ,Atomic and Molecular Physics, and Optics ,Finite element method ,bolt cracking ,Magnetic field ,bolted joints ,Cracking ,020303 mechanical engineering & transports ,Bolted joint ,Structural health monitoring ,0210 nano-technology ,business - Abstract
Bolted joints are the primary structures for the load transfer of large-scale structures. It is vital to monitor the process of bolt cracking for enduring structural safety. In this paper, a structural health monitoring technique based on the embedding eddy current sensing film has been proposed to quantify the crack parameters of bolt cracking. Two configurations of the sensing film containing one-dimensional circumferential coil array and two-dimensional coil array are designed and verified to have the ability to identify three crack parameters: the crack angle, the crack depth, and the crack location in the axial direction of the bolt. The finite element method has been employed not only to verify the capacity of the sensing film, but also to investigate the interaction between the crack and the eddy current/magnetic field. It has been demonstrated that as the crack propagates, the variations of the induced voltage of the sensing coils are influenced by both eddy current effect and magnetic flux leakage, which play different roles in the different periods of the crack propagation. Experiments have been performed to verify the effectiveness and feasibility of the sensing film to quantify three crack parameters in the process of the bolt cracking.
- Published
- 2020
48. Lipid remodeling in response to methionine stress in MDA-MBA-468 triple-negative breast cancer cells
- Author
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Jue Hou, Oliver Fiehn, Peter K. Kaiser, Dawei Lin, Bruce J. Tromberg, Stacey L. Borrego, and Johannes F. Fahrmann
- Subjects
0301 basic medicine ,Homocysteine ,lipid droplets ,cancer metabolism ,Triple Negative Breast Neoplasms ,030204 cardiovascular system & hematology ,Medical Biochemistry and Metabolomics ,Biochemistry ,chemistry.chemical_compound ,PC, phosphatidylcholine ,0302 clinical medicine ,Endocrinology ,UPR, unfolded protein response ,Met, methionine ,Lipid droplet ,lipid metabolism ,MS, methionine synthase ,2.1 Biological and endogenous factors ,Methionine synthase ,Aetiology ,skin and connective tissue diseases ,triglycerides ,Cancer ,DAG, diacyglycerol ,biology ,Chemistry ,SAM, S-adenosylmethionine ,Lipidome ,Cell biology ,ASNS, asparagine synthetase ,fatty acid metabolism ,MB468, shortened for MDA-MB-468 triple negative breast cancer cells ,Research Article ,Biochemistry & Molecular Biology ,CARS, coherent anti-Stokes Raman scattering ,MB468res-R8, Resistant cell line derived from MB468, also referred to as “R8” ,CHOP, C/EBP Homologous Protein ,QD415-436 ,PE, phosphatidylethanolamine ,SRS, stimulated Raman scattering ,03 medical and health sciences ,Breast Cancer ,methionine stress ,phospholipids ,methionine ,Methionine ,SAH, S-adenosylhomocysteine ,Lipid metabolism ,Cell Biology ,homocysteine ,Hcy, homocysteine ,030104 developmental biology ,Cancer cell ,Unfolded protein response ,biology.protein ,Biochemistry and Cell Biology - Abstract
Methionine (Met) is an essential amino acid and critical precursor to the cellular methyl donor S-adenosylmethionine. Unlike nontransformed cells, cancer cells have a unique metabolic requirement for Met and are unable to proliferate in growth media where Met is replaced with its metabolic precursor, homocysteine. This metabolic vulnerability is common among cancer cells regardless of tissue origin and is known as "methionine dependence", "methionine stress sensitivity", or the Hoffman effect. The response of lipids to Met stress, however, is not well-understood. Using mass spectroscopy, label-free vibrational microscopy, and next-generation sequencing, we characterize the response of lipids to Met stress in the triple-negative breast cancer cell line MDA-MB-468 and its Met stress insensitive derivative, MDA-MB-468res-R8. Lipidome analysis identified an immediate, global decrease in lipid abundances with the exception of triglycerides and an increase in lipid droplets in response to Met stress specifically in MDA-MB-468 cells. Furthermore, specific gene expression changes were observed as a secondary response to Met stress in MDA-MB-468, resulting in a downregulation of fatty acid metabolic genes and an upregulation of genes in the unfolded protein response pathway. We conclude that the extensive changes in lipid abundance during Met stress is a direct consequence of the modified metabolic profile previously described in Met stress-sensitive cells. The changes in lipid abundance likely results in changes in membrane composition inducing the unfolded protein response we observe.
- Published
- 2020
49. Scientific Data
- Author
-
Vivek Navale, Dina V. Sokolova, Robert R. Downs, Rorie Edmunds, Jonathan Crabtree, Ingrid Dillo, Reyna Jenkyns, Hervé L'Hours, Martina Stockhause, Barbara Sierman, Varsha K. Khodiyar, Wim Hugo, Mustapha Mokrane, Dawei Lin, Maryann E. Martone, Jonathan L. Petters, John D. Westbrook, Marisa Raquel De Giusti, David Giaretta, Data Archiving and Networked Services (DANS), and University Libraries
- Subjects
Ingenierías y Tecnologías ,Statistics and Probability ,010504 meteorology & atmospheric sciences ,Responsibility ,Digital data ,Internet privacy ,Ciencias Informáticas ,User focus ,Library and Information Sciences ,Transparency ,01 natural sciences ,Education ,03 medical and health sciences ,lcsh:Science ,030304 developmental biology ,0105 earth and related environmental sciences ,digital data ,0303 health sciences ,Genetic Databases ,business.industry ,Comment ,Transparency (behavior) ,Computer Science Applications ,Policy ,Sustainability ,Information and Communications Technology ,lcsh:Q ,Statistics, Probability and Uncertainty ,TRUST ,Genetic databases ,business ,repositories ,Information Systems - Abstract
As information and communication technology has become pervasive in our society, we are increasingly dependent on both digital data and repositories that provide access to and enable the use of such resources. Repositories must earn the trust of the communities they intend to serve and demonstrate that they are reliable and capable of appropriately managing the data they hold. Following a year-long public discussion and building on existing community consensus1, several stakeholders, representing various segments of the digital repository community, have collaboratively developed and endorsed a set of guiding principles to demonstrate digital repository trustworthiness. Transparency, Responsibility, User focus, Sustainability and Technology: the TRUST Principles provide a common framework to facilitate discussion and implementation of best practice in digital preservation by all stakeholders., Puede accederse a una versión en español de este artículo haciendo clic en "Documentos relacionados"., Servicio de Difusión de la Creación Intelectual
- Published
- 2020
50. Reconstruction of Ancient Operons From Complete Microbial Genome Sequences.
- Author
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Yuhong Wang, John P. Rose, Bi-Cheng Wang, and Dawei Lin
- Published
- 2003
- Full Text
- View/download PDF
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