124 results on '"De Grip WJ"'
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2. Preface
- Author
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de Grip, WJ and Watts, A
- Published
- 1995
3. [30] Purification of bovine rhodopsin over concanavalin A-sepharose
- Author
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De Grip Wj
- Subjects
Chromatography ,biology ,Elution ,Mannose ,Lectin ,Sepharose ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Sephadex ,Concanavalin A ,Rhodopsin ,biology.protein ,Glutaraldehyde - Abstract
Publisher Summary This chapter discusses a variety of procedures for purification of rhodopsin. One of these, chromatography over immobilized concanavalin A, makes use of the presence in rhodopsin of two carbohydrate moieties, both containing three mannose and three N-acetylglucosamine residues located near the N-terminus. The principle of the purification of rhodopsin is that the Concanavalin A, isolated from jack beans is a lectin with preference for α-D-derivatives of mannose and, to a lesser extent, glucose. Con A can be immobilized onto various supports by well-established procedures. If Con A contamination does constitute a problem, two alternatives are offered to deal with it: incubation of the Con A-Sepharose with low concentrations of glutaraldehyde, as described for other systems. This treatment considerably stabilizes the affinity matrix, but at the same time decreases the capacity to a variable extent and passing of the column eluate through a Sephadex G-50 column. This removes the small sugar ompetitor used in fairly high concentration to elute rhodopsin from the affinity matrix.
- Published
- 1982
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4. [38] Thermal stability of rhodopsin and opsin in some novel detergents
- Author
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De Grip Wj
- Subjects
Opsin ,Membrane ,Protein structure ,biology ,Membrane protein ,Biochemistry ,Rhodopsin ,Chemistry ,biology.protein ,Biophysics ,Thermal stability ,Large range ,Micelle - Abstract
Publisher Summary This chapter compares the stability of rhodopsin and opsin in some promising novel detergents with their stability in a small selection of detergents routinely used in rhodopsin studies. Detergents have proved to be indispensable for structural studies and purification of membrane proteins in the form of mixed protein–detergent micelles and for studies on lipid–protein interaction involving exchange of original lipids for other lipid molecules. This chapter reveals that the “ideal” detergent should at least satisfy certain conditions: (1) it should be soluble in a variety of aqueous media over a large range of temperatures; (2) its perturbance of the protein conformation should be minimal and reversible on reconstitution with lipids; (3) it should be easily removed or exchanged for lipids so as to permit the protein's reconstitution in “artificial” membranes where it can be investigated in an environment closely resembling the natural one; (4) it should be available on a relatively large scale at reasonable costs; and (5) it should be a well-defined, single compound.
- Published
- 1982
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5. Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.
- Author
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de Grip WJ and Ganapathy S
- Abstract
The first member and eponym of the rhodopsin family was identified in the 1930s as the visual pigment of the rod photoreceptor cell in the animal retina. It was found to be a membrane protein, owing its photosensitivity to the presence of a covalently bound chromophoric group. This group, derived from vitamin A, was appropriately dubbed retinal. In the 1970s a microbial counterpart of this species was discovered in an archaeon, being a membrane protein also harbouring retinal as a chromophore, and named bacteriorhodopsin. Since their discovery a photogenic panorama unfolded, where up to date new members and subspecies with a variety of light-driven functionality have been added to this family. The animal branch, meanwhile categorized as type-2 rhodopsins, turned out to form a large subclass in the superfamily of G protein-coupled receptors and are essential to multiple elements of light-dependent animal sensory physiology. The microbial branch, the type-1 rhodopsins, largely function as light-driven ion pumps or channels, but also contain sensory-active and enzyme-sustaining subspecies. In this review we will follow the development of this exciting membrane protein panorama in a representative number of highlights and will present a prospect of their extraordinary future potential., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 de Grip and Ganapathy.)
- Published
- 2022
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6. Membrane matters: The impact of a nanodisc-bilayer or a detergent microenvironment on the properties of two eubacterial rhodopsins.
- Author
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Ganapathy S, Opdam L, Hontani Y, Frehan S, Chen Q, Hellingwerf KJ, de Groot HJM, Kennis JTM, and de Grip WJ
- Subjects
- Cyanobacteria chemistry, Detergents chemistry, Maltose analogs & derivatives, Maltose chemistry, Phosphorylcholine analogs & derivatives, Phosphorylcholine chemistry, Protein Stability, Thioglucosides chemistry, Bacterial Proteins chemistry, Lipid Bilayers chemistry, Nanoparticles chemistry, Rhodopsin chemistry
- Abstract
Multi-spanning membrane proteins usually require solubilization to allow proper purification and characterization, which generally impairs their structural and functional integrity. We have tested the efficacy of several commonly used detergents and membrane-mimicking nanodiscs with respect to solubilization, spectral properties, thermal stability and oligomeric profile of two membrane proteins from the eubacterial rhodopsin family, green proteorhodopsin (PR) and Gloeobacter violaceus rhodopsin (GR). Good solubilization was observed for the detergents TritonX-100 and dodecylphosphocholine (DPC), but DPC in particular strongly affected the thermal stability of PR and especially GR. The least deleterious effects were obtained with n-dodecyl-β-D-maltopyranoside (DDM) and octyl glucose neopentyl glycol (OGNG), which adequately stabilized the native oligomeric and monomeric state of PR and GR, respectively. The transition from the oligomeric to the monomeric state is accompanied by a small red-shift. Both GR and PR were rather unstable in SMA-nanodiscs, but the highest thermal stability was realized by the MSP-nanodisc environment. The size of the MSP-nanodisc was too small to fit the PR hexamer, but large enough to contain the PR monomer and GR trimer. This permitted the comparison of the photocycle of trimeric GR in a membrane-mimicking (MSP-nanodisc) and a detergent (DDM) environment. The ultrarapid early phase of the photocycle (femto- to picosecond lifetimes) showed very similar kinetics in either environment, but the slower part, initiated with proton transfer and generation of the M intermediate, proceeded faster in the nanodisc environment. The implications of our results for the biophysical characterization of PR and GR are discussed., (Copyright © 2019 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2020
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7. Redshifted and Near-infrared Active Analog Pigments Based upon Archaerhodopsin-3.
- Author
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Ganapathy S, Kratz S, Chen Q, Hellingwerf KJ, de Groot HJM, Rothschild KJ, and de Grip WJ
- Subjects
- Halorubrum physiology, Models, Molecular, Mutation, Protein Binding, Protein Conformation, Archaeal Proteins chemistry, Pigments, Biological chemical synthesis
- Abstract
Archaerhodopsin-3 (AR3) is a member of the microbial rhodopsin family of hepta-helical transmembrane proteins, containing a covalently bound molecule of all-trans retinal as a chromophore. It displays an absorbance band in the visible region of the solar spectrum (λmax 556 nm) and functions as a light-driven proton pump in the archaeon Halorubrum sodomense. AR3 and its mutants are widely used in neuroscience as optogenetic neural silencers and in particular as fluorescent indicators of transmembrane potential. In this study, we investigated the effect of analogs of the native ligand all-trans retinal A1 on the spectral properties and proton-pumping activity of AR3 and its single mutant AR3 (F229S). While, surprisingly, the 3-methoxyretinal A2 analog did not redshift the absorbance maximum of AR3, the analogs retinal A2 and 3-methylamino-16-nor-1,2,3,4-didehydroretinal (MMAR) did generate active redshifted AR3 pigments. The MMAR analog pigments could even be activated by near-infrared light. Furthermore, the MMAR pigments showed strongly enhanced fluorescence with an emission band in the near-infrared peaking around 815 nm. We anticipate that the AR3 pigments generated in this study have widespread potential for near-infrared exploitation as fluorescent voltage-gated sensors in optogenetics and artificial leafs and as proton pumps in bioenergy-based applications., (© 2019 The Authors. Photochemistry and Photobiology published by Wiley Periodicals, Inc. on behalf of American Society for Photobiology.)
- Published
- 2019
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8. Photoreaction Dynamics of Red-Shifting Retinal Analogues Reconstituted in Proteorhodopsin.
- Author
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Hontani Y, Ganapathy S, Frehan S, Kloz M, de Grip WJ, and Kennis JTM
- Subjects
- Light, Retinaldehyde radiation effects, Rhodopsins, Microbial radiation effects, Retinaldehyde analogs & derivatives, Rhodopsins, Microbial chemistry
- Abstract
Microbial rhodopsins constitute a key protein family in optobiotechnological applications such as optogenetics and voltage imaging. Spectral tuning of rhodopsins into the deep-red and near-infrared spectral regions is of great demand in such applications because more bathochromic light into the near-infrared range penetrates deeper in living tissue. Recently, retinal analogues have been successfully used in ion transporting and fluorescent rhodopsins to achieve red-shifted absorption, activity, and emission properties. Understanding their photochemical mechanism is essential for further design of appropriate retinal analogues but is yet only poorly understood for most retinal analogue pigments. Here, we report the photoreaction dynamics of red-shifted analogue pigments of the proton pump proteorhodopsin (PR) containing A2 (all- trans-3,4-dehydroretinal), MOA2 (all- trans-3-methoxy-3,4-dehydroretinal), or DMAR (all- trans-3-dimethylamino-16-nor-1,2,3,4-didehydroretinal), utilizing femto- to submillisecond transient absorption spectroscopy. We found that the A2 analogue photoisomerizes in 1.4, 3.0, and/or 13 ps upon 510 nm light illumination, which is comparable to the native retinal (A1) in PR. On the other hand, the deprotonation of the A2 pigment Schiff base was observed with a dominant time constant of 67 μs, which is significantly slower than the A1 pigment. In the MOA2 pigment, no isomerization or photoproduct formation was detected upon 520 nm excitation, implying that all the excited molecules returned to the initial ground state in 2.0 and 4.2 ps. The DMAR pigment showed very slow excited state dynamics similar to the previously studied MMAR pigment, but only very little photoproduct was formed. The low efficiency of the photoproduct formation likely is the reason why DMAR analogue pigments of PR showed very weak proton pumping activity.
- Published
- 2019
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9. Functional Expression of Gloeobacter Rhodopsin in PSI-Less Synechocystis sp. PCC6803.
- Author
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Chen Q, Arents J, Schuurmans JM, Ganapathy S, de Grip WJ, Cheregi O, Funk C, Branco Dos Santos F, and Hellingwerf KJ
- Abstract
The approach of providing an oxygenic photosynthetic organism with a cyclic electron transfer system, i.e., a far-red light-driven proton pump, is widely proposed to maximize photosynthetic efficiency via expanding the absorption spectrum of photosynthetically active radiation. As a first step in this approach, Gloeobacter rhodopsin was expressed in a PSI-deletion strain of Synechocystis sp. PCC6803. Functional expression of Gloeobacter rhodopsin, in contrast to Proteorhodopsin, did not stimulate the rate of photoheterotrophic growth of this Synechocystis strain, analyzed with growth rate measurements and competition experiments. Nevertheless, analysis of oxygen uptake and-production rates of the Gloeobacter rhodopsin-expressing strains, relative to the ΔPSI control strain, confirm that the proton-pumping Gloeobacter rhodopsin provides the cells with additional capacity to generate proton motive force. Significantly, expression of the Gloeobacter rhodopsin did modulate levels of pigment formation in the transgenic strain.
- Published
- 2019
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10. Combining retinal-based and chlorophyll-based (oxygenic) photosynthesis: Proteorhodopsin expression increases growth rate and fitness of a ∆PSI strain of Synechocystis sp. PCC6803.
- Author
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Chen Q, Arents J, Schuurmans JM, Ganapathy S, de Grip WJ, Cheregi O, Funk C, Dos Santos FB, and Hellingwerf KJ
- Subjects
- Conjugation, Genetic genetics, Culture Media, Escherichia coli metabolism, Glucose metabolism, Light, NADPH Dehydrogenase metabolism, Oxygen metabolism, Rhodopsins, Microbial genetics, Synechocystis genetics, Chlorophyll metabolism, Photosynthesis genetics, Retinaldehyde metabolism, Rhodopsins, Microbial biosynthesis, Synechocystis metabolism
- Abstract
To fill the "green absorption gap", a green absorbing proteorhodopsin was expressed in a PSI-deletion strain (ΔPSI) of Synechocystis sp. PCC6803. Growth-rate measurements, competition experiments and physiological characterization of the proteorhodopsin-expressing strains, relative to the ΔPSI control strain, allow us to conclude that proteorhodopsin can enhance the rate of photoheterotrophic growth of ΔPSI Synechocystis strain. The physiological characterization included measurement of the amount of residual glucose in the spent medium and analysis of oxygen uptake- and production rates. To explore the use of solar radiation beyond the PAR region, a red-shifted variant Proteorhodopsin-D212N/F234S was expressed in a retinal-deficient PSI-deletion strain (ΔPSI/ΔSynACO). Via exogenous addition of retinal analogue an infrared absorbing pigment (maximally at 740 nm) was reconstituted in vivo. However, upon illumination with 746 nm light, it did not significantly stimulate the growth (rate) of this mutant. The inability of the proteorhodopsin-expressing ΔPSI strain to grow photoautotrophically is most likely due to a kinetic rather than a thermodynamic limitation of its NADPH-dehydrogenase in NADP
+ -reduction., (Copyright © 2018 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.)- Published
- 2019
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11. Strong pH-Dependent Near-Infrared Fluorescence in a Microbial Rhodopsin Reconstituted with a Red-Shifting Retinal Analogue.
- Author
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Hontani Y, Ganapathy S, Frehan S, Kloz M, de Grip WJ, and Kennis JTM
- Subjects
- Fluorescence, Hydrogen-Ion Concentration, Protons, Schiff Bases chemistry, Spectrum Analysis, Raman, Retinaldehyde analogs & derivatives, Rhodopsins, Microbial chemistry
- Abstract
Near-infrared (NIR)-driven rhodopsins are of great interest in optogenetics and other optobiotechnological developments such as artificial photosynthesis and deep-tissue voltage imaging. Here we report that the proton pump proteorhodopsin (PR) containing a NIR-active retinal analogue (PR:MMAR) exhibits intense NIR fluorescence at a quantum yield of 3.3%. This is 130 times higher than native PR ( Lenz , M. O. ; Biophys J. 2006 , 91 , 255 - 262 ) and 3-8 times higher than the QuasAr and PROPS voltage sensors ( Kralj , J. ; Science 2011 , 333 , 345 - 348 ; Hochbaum , D. R. ; Nat. Methods 2014 , 11 , 825 - 833 ). The NIR fluorescence strongly depends on the pH in the range of 6-8.5, suggesting potential application of MMAR-binding proteins as ultrasensitive NIR-driven pH and/or voltage sensors. Femtosecond transient absorption spectroscopy showed that upon near-IR excitation, PR:MMAR features an unusually long fluorescence lifetime of 310 ps and the absence of isomerized photoproducts, consistent with the high fluorescence quantum yield. Stimulated Raman analysis indicates that the NIR-absorbing species develops upon protonation of a conserved aspartate, which promotes charge delocalization and bond length leveling due to an additional methylamino group in MMAR, in essence providing a secondary protonated Schiff base. This results in much smaller bond length alteration along the conjugated backbone, thereby conferring significant single-bond character to the C13═C14 bond and structural deformation of the chromophore, which interferes with photoinduced isomerization and extends the lifetime for fluorescence. Hence, our studies allow for a molecular understanding of the relation between absorption/emission wavelength, isomerization, and fluorescence in PR:MMAR. As acidification enhances the resonance state, this explains the strong pH dependence of the NIR emission.
- Published
- 2018
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12. Deletion of sll1541 in Synechocystis sp. Strain PCC 6803 Allows Formation of a Far-Red-Shifted holo -Proteorhodopsin In Vivo .
- Author
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Chen Q, van der Steen JB, Arents JC, Hartog AF, Ganapathy S, de Grip WJ, and Hellingwerf KJ
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- Bacterial Proteins biosynthesis, Gene Expression, Rhodopsins, Microbial, Synechocystis metabolism, Bacterial Proteins genetics, Base Sequence, Sequence Deletion, Synechocystis genetics
- Abstract
In many pro- and eukaryotes, a retinal-based proton pump equips the cell to drive ATP synthesis with (sun)light. Such pumps, therefore, have been proposed as a plug-in for cyanobacteria to artificially increase the efficiency of oxygenic photosynthesis. However, little information on the metabolism of retinal, their chromophore, is available for these organisms. We have studied the in vivo roles of five genes ( sll1541 , slr1648 , slr0091 , slr1192 , and slr0574 ) potentially involved in retinal metabolism in Synechocystis sp. strain PCC 6803. With a gene deletion approach, we have shown that Synechocystis apo- carotenoid-15,15-oxygenase (SynACO), encoded by gene sll1541 , is an indispensable enzyme for retinal synthesis in Synechocystis , presumably via asymmetric cleavage of β- apo -carotenal. The second carotenoid oxygenase (SynDiox2), encoded by gene slr1648 , competes with SynACO for substrate(s) but only measurably contributes to retinal biosynthesis in stationary phase via an as-yet-unknown mechanism. In vivo degradation of retinal may proceed through spontaneous chemical oxidation and via enzyme-catalyzed processes. Deletion of gene slr0574 (encoding CYP120A1), but not of slr0091 or of slr1192 , causes an increase (relative to the level in wild-type Synechocystis ) in the retinal content in both the linear and stationary growth phases. These results suggest that CYP120A1 does contribute to retinal degradation. Preliminary data obtained using
13 C-labeled retinal suggest that conversion to retinol and retinoic acid and subsequent further oxidation also play a role. Deletion of sll1541 leads to deficiency in retinal synthesis and allows the in vivo reconstitution of far-red-absorbing holo -proteorhodopsin with exogenous retinal analogues, as demonstrated here for all- trans 3,4-dehydroretinal and 3-methylamino-16-nor-1,2,3,4-didehydroretinal. IMPORTANCE Retinal is formed by many cyanobacteria and has a critical role in most forms of life for processes such as photoreception, growth, and stress survival. However, the metabolic pathways in cyanobacteria for synthesis and degradation of retinal are poorly understood. In this paper we identify genes involved in its synthesis, characterize their role, and provide an initial characterization of the pathway of its degradation. This led to the identification of sll1541 (encoding SynACO) as the essential gene for retinal synthesis. Multiple pathways for retinal degradation presumably exist. These results have allowed us to construct a strain that expresses a light-dependent proton pump with an action spectrum extending beyond 700 nm. The availability of this strain will be important for further work aimed at increasing the overall efficiency of oxygenic photosynthesis., (Copyright © 2018 American Society for Microbiology.)- Published
- 2018
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13. A Quantum-mechanical Study of the Binding Pocket of Proteorhodopsin: Absorption and Vibrational Spectra Modulated by Analogue Chromophores.
- Author
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Buda F, Keijer T, Ganapathy S, and de Grip WJ
- Subjects
- Binding Sites, Models, Molecular, Molecular Structure, Retinaldehyde chemistry, Spectroscopy, Fourier Transform Infrared, Vibration, Quantum Theory, Rhodopsins, Microbial chemistry
- Abstract
Proteorhodopsin is a light-driven proton pumping membrane protein related to bacteriorhodopsin. It contains an all-trans retinal A1 chromophore covalently bound to a lysine residue via a protonated Schiff base. In this study, we exploited density functional theory (DFT) calculations to investigate the retinal binding pocket in the dark state and after mimicking photoisomerization. The model of the binding pocket is constructed incrementally by adding the residues near the retinal that are necessary to ensure a stable protonated Schiff base. The presence of a few water molecules near the Schiff base turns out to be an essential feature of the model. The absorption properties are then studied using time-dependent DFT (TDDFT) and compared to experimental data to further validate the structural model and to assess the accuracy of the computational setting. It is shown that TDDFT is able to reproduce the main absorption peak accurately and to quantitatively determine the spectral shift induced by substituting the native all-trans retinal A1 chromophore with different retinal analogues. Moreover, ab initio molecular dynamics simulations are performed to investigate the vibrational spectra of our models before and after isomerization. Specific differences in the vibrational spectra are identified that provide further insight into experimental FTIR difference spectra., (© 2017 The American Society of Photobiology.)
- Published
- 2017
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14. Functional Expression of Gloeobacter Rhodopsin in Synechocystis sp. PCC6803.
- Author
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Chen Q, Arents J, Ganapathy S, de Grip WJ, and Hellingwerf KJ
- Subjects
- Blotting, Western, Escherichia coli genetics, Photosynthesis, Synechocystis genetics, Cyanobacteria metabolism, Rhodopsins, Microbial metabolism, Synechocystis metabolism
- Abstract
Proteorhodopsins are light-driven proton pumps that occur widespread in Nature, where they function predominantly in environments with high incident irradiance. Their maximal absorbance is usually in the blue range, but can be extended into the (far)red range of the electromagnetic spectrum. Because they can be expressed heterologously, they may be exploited in studies aimed at increasing the efficiency of photosynthesis. Here we report further studies toward this goal, by comparing the expression of two different bacterial rhodopsins (Proteorhodopsin and Gloeobacter rhodopsin) in the model cyanobacterium Synechocystis sp. PCC6803. In particular, we investigated the pigments bound by the respective apo-opsins, and the oligomeric state of the corresponding holo-rhodopsins, both in Escherichia coli and in the cyanobacterial membranes. We conclude that the two proton-pumping rhodopsins are predominantly present in an oligomeric state (hexamers for Proteorhodopsin and trimers for Gloeobacter rhodopsin). Furthermore, Gloeobacter rhodopsin is able to bind an antenna carotenoid (in addition to retinal) and has the highest pumping rate at given light intensity. However, its lower expression level will decrease its physiological effectiveness. It remains to be established which of these two bacterial rhodopsins is best in stimulating the growth rate of its cyanobacterial host., (© 2017 The American Society of Photobiology.)
- Published
- 2017
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15. Retinal-Based Proton Pumping in the Near Infrared.
- Author
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Ganapathy S, Venselaar H, Chen Q, de Groot HJ, Hellingwerf KJ, and de Grip WJ
- Subjects
- Molecular Structure, Proton Pumps genetics, Retinaldehyde analogs & derivatives, Infrared Rays, Proton Pumps chemistry, Retinaldehyde chemistry
- Abstract
Proteorhodopsin (PR) and Gloeobacter rhodopsin (GR) are retinal-based light-driven proton pumps that absorb visible light (maxima at 520-540 nm). Shifting the action spectra of these proton pumps beyond 700 nm would generate new prospects in optogenetics, membrane sensor technology, and complementation of oxygenic phototrophy. We therefore investigated the effect of red-shifting analogues of retinal, combined with red-shifting mutations, on the spectral properties and pump activity of the resulting pigments. We investigated a variety of analogues, including many novel ones. One of the novel analogues we tested, 3-methylamino-16-nor-1,2,3,4-didehydroretinal (MMAR), produced exciting results. This analogue red-shifted all of the rhodopsin variants tested, accompanied by a strong broadening of the absorbance band, tailing out to 850-950 nm. In particular, MMAR showed a strong synergistic effect with the PR-D212N,F234S double mutant, inducing an astonishing 200 nm red shift in the absorbance maximum. To our knowledge, this is by far the largest red shift reported for any retinal protein. Very importantly, all MMAR-containing holoproteins are the first rhodopsins retaining significant pump activity under near-infrared illumination (730 nm light-emitting diode). Such MMAR-based rhodopsin variants present very promising opportunities for further synthetic biology modification and for a variety of biotechnological and biophysical applications.
- Published
- 2017
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16. Expression of holo-proteorhodopsin in Synechocystis sp. PCC 6803.
- Author
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Chen Q, van der Steen JB, Dekker HL, Ganapathy S, de Grip WJ, and Hellingwerf KJ
- Subjects
- Recombinant Proteins biosynthesis, Recombinant Proteins genetics, Rhodopsins, Microbial genetics, Synechocystis genetics, Gene Expression, Rhodopsins, Microbial biosynthesis, Synechocystis metabolism
- Abstract
Retinal-based photosynthesis may contribute to the free energy conversion needed for growth of an organism carrying out oxygenic photosynthesis, like a cyanobacterium. After optimization, this may even enhance the overall efficiency of phototrophic growth of such organisms in sustainability applications. As a first step towards this, we here report on functional expression of the archetype proteorhodopsin in Synechocystis sp. PCC 6803. Upon use of the moderate-strength psbA2 promoter, holo-proteorhodopsin is expressed in this cyanobacterium, at a level of up to 10(5) molecules per cell, presumably in a hexameric quaternary structure, and with approximately equal distribution (on a protein-content basis) over the thylakoid and the cytoplasmic membrane fraction. These results also demonstrate that Synechocystis sp. PCC 6803 has the capacity to synthesize all-trans-retinal. Expressing a substantial amount of a heterologous opsin membrane protein causes a substantial growth retardation Synechocystis, as is clear from a strain expressing PROPS, a non-pumping mutant derivative of proteorhodopsin. Relative to this latter strain, proteorhodopsin expression, however, measurably stimulates its growth., (Copyright © 2016 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2016
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17. Light sensitivity in a vertebrate mechanoreceptor?
- Author
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Baker GE, de Grip WJ, Turton M, Wagner HJ, Foster RG, and Douglas RH
- Subjects
- Animals, Lateral Line System metabolism, Light, Mechanoreceptors metabolism, Rod Opsins metabolism, Xenopus laevis physiology
- Abstract
Using immunohistochemistry and western blot analysis, we demonstrate that melanopsin is localised in cells around the central pore of lateral line neuromasts in the African clawed frog, Xenopus laevis. Since melanopsin is a known photoreceptor pigment with diverse functions in vertebrates, we suggest that the lateral line of Xenopus laevis, which is primarily a mechanoreceptor, might also be light sensitive. Potential functions of such photosensitivity are discussed, including its role in mediating locomotor responses following dermal illumination., (© 2015. Published by The Company of Biologists Ltd.)
- Published
- 2015
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18. Modulation of spectral properties and pump activity of proteorhodopsins by retinal analogues.
- Author
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Ganapathy S, Bécheau O, Venselaar H, Frölich S, van der Steen JB, Chen Q, Radwan S, Lugtenburg J, Hellingwerf KJ, de Groot HJ, and de Grip WJ
- Subjects
- Bacterial Proteins genetics, Bacterial Proteins metabolism, Binding Sites genetics, Cyanobacteria genetics, Proton Pumps genetics, Proton Pumps metabolism, Rhodopsin genetics, Rhodopsin metabolism, Rhodopsins, Microbial, Spectrophotometry, Ultraviolet, Bacterial Proteins chemistry, Cyanobacteria chemistry, Proton Pumps chemistry, Retinaldehyde analogs & derivatives, Retinaldehyde chemistry, Rhodopsin chemistry
- Abstract
Proteorhodopsins are heptahelical membrane proteins which function as light-driven proton pumps. They use all-trans-retinal A1 as a ligand and chromophore and absorb visible light (520-540 nm). In the present paper, we describe modulation of the absorbance band of the proteorhodopsin from Monterey Bay SAR 86 gammaproteobacteria (PR), its red-shifted double mutant PR-D212N/F234S (PR-DNFS) and Gloeobacter rhodopsin (GR). This was approached using three analogues of all-trans-retinal A1, which differ in their electronic and conformational properties: all-trans-6,7-s-trans-locked retinal A1, all-trans-phenyl-retinal A1 and all-trans-retinal A2. We further probed the effect of these retinal analogues on the proton pump activity of the proteorhodopsins. Our results indicate that, whereas the constraints of the retinal-binding pocket differ for the proteorhodopsins, at least two of the retinal analogues are capable of shifting the absorbance bands of the pigments either bathochromically or hypsochromically, while maintaining their proton pump activity. Furthermore, the shifts implemented by the analogues add up to the shift induced by the double mutation in PR-DNFS. This type of chromophore substitution may present attractive applications in the field of optogenetics, towards increasing the flexibility of optogenetic tools or for membrane potential probes.
- Published
- 2015
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19. Conformational activation of visual rhodopsin in native disc membranes.
- Author
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Malmerberg E, M Bovee-Geurts PH, Katona G, Deupi X, Arnlund D, Wickstrand C, Johansson LC, Westenhoff S, Nazarenko E, Schertler GF, Menzel A, de Grip WJ, and Neutze R
- Subjects
- Animals, Cattle, Protein Conformation radiation effects, Scattering, Radiation, Light, Models, Molecular, Rhodopsin chemistry, Rhodopsin radiation effects
- Abstract
Rhodopsin is the G protein-coupled receptor (GPCR) that serves as a dim-light receptor for vision in vertebrates. We probed light-induced conformational changes in rhodopsin in its native membrane environment at room temperature using time-resolved wide-angle x-ray scattering. We observed a rapid conformational transition that is consistent with an outward tilt of the cytoplasmic portion of transmembrane helix 6 concomitant with an inward movement of the cytoplasmic portion of transmembrane helix 5. These movements were considerably larger than those reported from the basis of crystal structures of activated rhodopsin, implying that light activation of rhodopsin involves a more extended conformational change than was previously suggested., (Copyright © 2015, American Association for the Advancement of Science.)
- Published
- 2015
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20. X-ray structure of human aquaporin 2 and its implications for nephrogenic diabetes insipidus and trafficking.
- Author
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Frick A, Eriksson UK, de Mattia F, Oberg F, Hedfalk K, Neutze R, de Grip WJ, Deen PM, and Törnroth-Horsefield S
- Subjects
- Aquaporin 2 genetics, Binding Sites, Cadmium metabolism, Calcium metabolism, Crystallography, X-Ray, Endoplasmic Reticulum metabolism, Endosomal Sorting Complexes Required for Transport metabolism, Humans, Models, Molecular, Oocytes metabolism, Protein Structure, Secondary, Protein Transport, Aquaporin 2 chemistry, Aquaporin 2 metabolism, Diabetes Insipidus, Nephrogenic metabolism
- Abstract
Human aquaporin 2 (AQP2) is a water channel found in the kidney collecting duct, where it plays a key role in concentrating urine. Water reabsorption is regulated by AQP2 trafficking between intracellular storage vesicles and the apical membrane. This process is tightly controlled by the pituitary hormone arginine vasopressin and defective trafficking results in nephrogenic diabetes insipidus (NDI). Here we present the X-ray structure of human AQP2 at 2.75 Å resolution. The C terminus of AQP2 displays multiple conformations with the C-terminal α-helix of one protomer interacting with the cytoplasmic surface of a symmetry-related AQP2 molecule, suggesting potential protein-protein interactions involved in cellular sorting of AQP2. Two Cd(2+)-ion binding sites are observed within the AQP2 tetramer, inducing a rearrangement of loop D, which facilitates this interaction. The locations of several NDI-causing mutations can be observed in the AQP2 structure, primarily situated within transmembrane domains and the majority of which cause misfolding and ER retention. These observations provide a framework for understanding why mutations in AQP2 cause NDI as well as structural insights into AQP2 interactions that may govern its trafficking.
- Published
- 2014
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21. Assembly of the major light-harvesting complex II in lipid nanodiscs.
- Author
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Pandit A, Shirzad-Wasei N, Wlodarczyk LM, van Roon H, Boekema EJ, Dekker JP, and de Grip WJ
- Subjects
- Kinetics, Light-Harvesting Protein Complexes ultrastructure, Nanostructures ultrastructure, Spectrometry, Fluorescence, Temperature, Light-Harvesting Protein Complexes metabolism, Lipids chemistry, Nanostructures chemistry, Spinacia oleracea metabolism
- Abstract
Self-aggregation of isolated plant light-harvesting complexes (LHCs) upon detergent extraction is associated with fluorescence quenching and is used as an in vitro model to study the photophysical processes of nonphotochemical quenching (NPQ). In the NPQ state, in vivo induced under excess solar light conditions, harmful excitation energy is safely dissipated as heat. To prevent self-aggregation and probe the conformations of LHCs in a lipid environment devoid from detergent interactions, we assembled LHCII trimer complexes into lipid nanodiscs consisting of a bilayer lipid matrix surrounded by a membrane scaffold protein (MSP). The LHCII nanodiscs were characterized by fluorescence spectroscopy and found to be in an unquenched, fluorescent state. Remarkably, the absorbance spectra of LHCII in lipid nanodiscs show fine structure in the carotenoid and Q(y) region that is different from unquenched, detergent-solubilized LHCII but similar to that of self-aggregated, quenched LHCII in low-detergent buffer without magnesium ions. The nanodisc data presented here suggest that 1), LHCII pigment-protein complexes undergo conformational changes upon assembly in nanodiscs that are not correlated with downregulation of its light-harvesting function; and 2), these effects can be separated from quenching and aggregation-related phenomena. This will expand our present view of the conformational flexibility of LHCII in different microenvironments., (Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2011
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22. The area centralis in the chicken retina contains efferent target amacrine cells.
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Weller C, Lindstrom SH, De Grip WJ, and Wilson M
- Subjects
- Animals, Cell Count, Chickens, Columbidae, Fovea Centralis metabolism, Immunohistochemistry, Rhodopsin biosynthesis, Species Specificity, Visual Acuity, Visual Pathways, Amacrine Cells cytology, Fovea Centralis cytology, Neurons, Efferent cytology
- Abstract
The retinas of birds receive a substantial efferent, or centrifugal, input from a midbrain nucleus. The function of this input is presently unclear, but previous work in the pigeon has shown that efferent input is excluded from the area centralis, suggesting that the functions of the area centralis and the efferent system are incompatible. Using an antibody specific to rods, we have identified the area centralis in another species, the chicken, and mapped the distribution of the unique amacrine cells that are the postsynaptic partners of efferent fibers. Efferent target amacrine cells are found within the chicken area centralis and their density is continuous across the border of the area centralis. In contrast to the pigeon retina then, we conclude that the chicken area centralis receives efferent input. We suggest that the difference between the two species is attributable to the presence of a fovea within the area centralis of the pigeon and its absence from that of the chicken.
- Published
- 2009
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23. Functional expression, targeting and Ca2+ signaling of a mouse melanopsin-eYFP fusion protein in a retinal pigment epithelium cell line.
- Author
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Giesbers ME, Shirzad-Wasei N, Bosman GJ, and de Grip WJ
- Subjects
- Animals, Base Sequence, Cell Line, DNA genetics, DNA Primers, Humans, Mice, Signal Transduction, Xenopus, Calcium physiology, Pigment Epithelium of Eye physiology, Rod Opsins genetics, Rod Opsins physiology
- Abstract
Melanopsin, first discovered in Xenopus melanophores, is now established as a functional sensory photopigment of the intrinsically photosensitive retinal ganglion cells. These ganglion cells drive circadian rhythm and pupillary adjustments through projection to the brain. Melanopsin shares structural similarities with all known opsins. Comprehensive characterization of melanopsin with respect to its spectral properties, photochemical cascade and signaling partners requires a suitable recombinant system and high expression levels. This combination has not yet been described. To address this issue, we have expressed recombinant mouse melanopsin in several cell lines. Using enhanced yellow fluorescent protein (eYFP) as a visualization tag, expression was observed in all cell lines. Confocal microscopy revealed that melanopsin was properly routed to the plasma membrane only in retinal pigment epithelium (RPE)-derived D407 cells and in human embryonic kidney (HEK) cells. Further, we performed intracellular calcium measurements in order to probe the melanopsin signaling activity of this fusion protein. Transfected cells were loaded with the calcium indicator Fura2-AM. Upon illumination, an immediate but transient calcium response was observed in HEK as well as in D407 cells, while mock-transfected cells showed no calcium response under identical conditions. Supplementation with 11-cis retinal or all-trans retinal enhanced the response. After prolonged illumination the cells became desensitized. Thus, RPE-derived cells expressing recombinant melanopsin may constitute a suitable system for the study of the structural and functional characteristics of melanopsin.
- Published
- 2008
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24. Survival of red blood cells after transfusion: a comparison between red cells concentrates of different storage periods.
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Luten M, Roerdinkholder-Stoelwinder B, Schaap NP, de Grip WJ, Bos HJ, and Bosman GJ
- Subjects
- Adult, Blood Preservation adverse effects, Cell Survival, Erythrocyte Count, Female, Flow Cytometry, Humans, Male, Middle Aged, Time Factors, Blood Preservation methods, Erythrocyte Transfusion, Erythrocytes cytology
- Abstract
Background: The use of fresh red blood cells (RBCs) is recommended for critically ill patients and patients undergoing surgery, although there is no conclusive evidence that this is beneficial. In this follow-up study, the short-term and the long-term recovery of irradiated, leukoreduced RBCs transfused after either a short storage (SS) or a long storage (LS) period were compared. By consecutive transfusion of RBCs with a SS and LS period, a direct comparison of their survival within the same patient was possible., Study Design and Methods: Ten transfusion-requiring patients each received a SS RCCs (stored 0-10 days) and a LS RCCs (stored 25-35 days) consecutively. Short-term and long-term survival of the transfused RBCs was followed by flow cytometry using natural differences in RBC antigens between donors and patients. Posttransfusion recovery (PTR) was measured at several time points after transfusion., Results: The mean 24-hour PTR of SS RBCs is 86.4 +/- 17.8 percent and that of LS RBCs 73.5 +/- 13.7 percent. After the first 24 hours, the mean times to reach a PTR of 50 percent of the 24-hour PTR (T50) and mean potential life spans (mPLs) of the surviving SS and LS RBCs (41 and 116 days and 41 and 114 days, respectively) do not differ., Conclusions: The mean 24-hour PTR of both SS and LS RBCs complies with the guidelines, even in a compromised patient population. The 24-hour PTR of SS RBCs, however, is significantly higher than that of LS RBCs. The remaining population of SS and LS RBCs has a nearly identical long-term survival. Therefore, depletion of the removal-prone RBCs before transfusion may be an efficient approach for product improvement.
- Published
- 2008
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25. The proteome of red cell membranes and vesicles during storage in blood bank conditions.
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Bosman GJ, Lasonder E, Luten M, Roerdinkholder-Stoelwinder B, Novotný VM, Bos H, and De Grip WJ
- Subjects
- Anion Exchange Protein 1, Erythrocyte metabolism, Cell Survival physiology, Cellular Senescence physiology, Chromatography, Liquid, Databases, Protein, Enzymes metabolism, Erythrocytes cytology, Erythrocytes metabolism, GTP-Binding Proteins metabolism, Humans, Mass Spectrometry, Molecular Chaperones metabolism, Proteome, Signal Transduction physiology, Blood Banking methods, Blood Preservation, Cytoplasmic Vesicles metabolism, Erythrocyte Membrane metabolism, Proteomics methods
- Abstract
Background: During storage of red cells (RBCs) for transfusion, RBCs undergo a number of biochemical and morphologic changes. To be able to identify the mechanisms underlying these storage lesions, a proteomic analysis of the membranes of RBCs and their vesicles was performed during various periods of storage in blood bank conditions., Study Design and Methods: RBCs and vesicles were isolated from RBCs after various storage periods. The proteins of RBC membranes and vesicles were separated by gel electrophoresis and identified by a semiquantitative proteomic analysis., Results: Our findings confirm previous data, such as a storage-associated increase in hemoglobin binding to the membrane and aggregation and degradation of the integral membrane protein band 3, suggesting a remodeling of the RBC membrane during storage. Our data also show storage-dependent changes in the membrane association of proteasome and chaperone proteins, metabolic enzymes, small G proteins, and signal transduction proteins. Vesicles display similar changes in their protein composition during storage., Conclusion: The results of this analysis indicate that the storage-related changes in the RBC membrane are the results of disturbance and/or acceleration of physiologic processes such as cellular aging, including vesicle formation. The latter may serve to remove damaged membrane patches that would otherwise lead to accelerated RBC removal. These data provide a framework for future studies toward the development of better storage conditions and a reduction of the side effects of RBC transfusion.
- Published
- 2008
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26. Internalization and desensitization of adenosine receptors.
- Author
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Klaasse EC, Ijzerman AP, de Grip WJ, and Beukers MW
- Abstract
Until now, more than 800 distinct G protein-coupled receptors (GPCRs) have been identified in the human genome. The four subtypes of the adenosine receptor (A(1), A(2A), A(2B) and A(3) receptor) belong to this large family of GPCRs that represent the most widely targeted pharmacological protein class. Since adenosine receptors are widespread throughout the body and involved in a variety of physiological processes and diseases, there is great interest in understanding how the different subtypes are regulated, as a basis for designing therapeutic drugs that either avoid or make use of this regulation. The major GPCR regulatory pathway involves phosphorylation of activated receptors by G protein-coupled receptor kinases (GRKs), a process that is followed by binding of arrestin proteins. This prevents receptors from activating downstream heterotrimeric G protein pathways, but at the same time allows activation of arrestin-dependent signalling pathways. Upon agonist treatment, adenosine receptor subtypes are differently regulated. For instance, the A(1)Rs are not (readily) phosphorylated and internalize slowly, showing a typical half-life of several hours, whereas the A(2A)R and A(2B)R undergo much faster downregulation, usually shorter than 1 h. The A(3)R is subject to even faster downregulation, often a matter of minutes. The fast desensitization of the A(3)R after agonist exposure may be therapeutically equivalent to antagonist occupancy of the receptor. This review describes the process of desensitization and internalization of the different adenosine subtypes in cell systems, tissues and in vivo studies. In addition, molecular mechanisms involved in adenosine receptor desensitization are discussed.
- Published
- 2008
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27. Red cell concentrates of hemochromatosis patients comply with the storage guidelines for transfusion purposes.
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Luten M, Roerdinkholder-Stoelwinder B, Rombout-Sestrienkova E, de Grip WJ, Bos HJ, and Bosman GJ
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Blood Preservation standards, Erythrocytes cytology, Guideline Adherence, Guidelines as Topic standards, Humans, Middle Aged, Blood Preservation methods, Blood Transfusion, Erythrocytes metabolism, Hemochromatosis blood
- Abstract
Background: Therapeutic phlebotomy is the preferred treatment for iron overload associated with hemochromatosis. In the Netherlands, red blood cell concentrates (RCCs) from hemochromatosis patients are not used for transfusion purposes. In this study, their storage performance was compared with that of control donors as a first step in the evaluation of their potential usefulness for transfusion., Study Design and Methods: RCCs were obtained from hemochromatosis patients and regular donors, either by apheresis or by whole-blood collection, and stored up to 50 days under routine Dutch blood bank conditions. Weekly samples were taken for determination of hematologic, biophysical, and biochemical variables., Results: Most variables displayed the same storage-related changes in RCCs originating from hemochromatosis patients as in those from regular donors. In all RCCs, hemolysis remained well below the guideline limit of 0.8 percent for up to 6 weeks of storage, and the glucose concentration remained above the required 5 mmol per L up to 5 weeks of storage. After 4 weeks of storage, the mean ATP level remained above the required limit of 75 percent of the starting value in all RCCs as well. The major difference was a larger mean cell volume in hereditary hemochromatosis RBCs up to 50 days of storage., Conclusions: RCCs from hemochromatosis patients comply with the in vitro quality requirements for transfusion. This paves the way for the final step, namely, the establishment of the 24-hour RBC posttransfusion recovery.
- Published
- 2008
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28. GPCR proteomics: mass spectrometric and functional analysis of histamine H1 receptor after baculovirus-driven and in vitro cell free expression.
- Author
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Sansuk K, Balog CI, van der Does AM, Booth R, de Grip WJ, Deelder AM, Bakker RA, Leurs R, and Hensbergen PJ
- Subjects
- Amino Acid Sequence, Animals, Cell-Free System, Cloning, Molecular, Humans, Molecular Sequence Data, Receptors, Histamine H1 biosynthesis, Receptors, Histamine H1 genetics, Spodoptera, Baculoviridae physiology, Proteomics methods, Receptors, Histamine H1 chemistry, Receptors, Histamine H1 physiology, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
- Abstract
The human histamine H1 Receptor (hH1R) belongs to the family of G-protein coupled receptors (GPCRs), an attractive and proven class of drug targets in a wide range of therapeutic areas. However, due to the low amount of available purified protein and the hydrophobic nature of GPCRs, limited structural information is available on ligand-receptor interaction especially for the transmembrane (TM) domain regions where the majority of ligand-receptor interactions occur. During the last decades, proteomic techniques have increasingly become an important tool to reveal detailed information on the individual GPCR class, including post-translational modifications and characterizations of GPCRs binding pocket. Herein, we report the successful functional production and mass spectrometric characterization of the hH1R, after baculovirus-driven and in vitro cell-free expression. Using only MALDI-ToF, sequence coverage of more than 80%, including five hydrophobic TM domains was achieved. Moreover, we have identified an asparagine residue in the hH1R protein that is subject to N-linked glycosylation. This information would be valuable for drug discovery efforts by allowing us to further study H1R-ligand interactions using histaminergic ligands that covalently bind the hH1R, and eventually revealing binding sites of hH1R and other GPCRs.
- Published
- 2008
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29. Allosteric modulators affect the internalization of human adenosine A1 receptors.
- Author
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Klaasse EC, van den Hout G, Roerink SF, de Grip WJ, Ijzerman AP, and Beukers MW
- Subjects
- Adenosine analogs & derivatives, Adenosine pharmacology, Allosteric Regulation, Animals, Binding, Competitive, CHO Cells, Cricetinae, Cricetulus, Dose-Response Relationship, Drug, Endocytosis drug effects, Humans, Luminescent Proteins genetics, Luminescent Proteins metabolism, Microscopy, Confocal, Radioligand Assay, Receptor, Adenosine A1 genetics, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Thiadiazoles, Thiazoles pharmacology, Thiophenes pharmacology, Transfection, Tritium, Xanthines metabolism, Endocytosis physiology, Receptor, Adenosine A1 metabolism
- Abstract
To study the effect of allosteric modulators on the internalization of human adenosine A(1) receptors, the receptor was equipped with a C-terminal yellow fluorescent protein tag. The introduction of this tag did not affect the radioligand binding properties of the receptor. CHO cells stably expressing this receptor were subjected during 16 h to varying concentrations of the agonist N(6)-cyclopentyladenosine (CPA) in the absence or presence of 10 microM of the allosteric enhancer PD 81,723 ((2-amino-4,5-dimethyl-3-thienyl)-[3-(trifluoromethyl)phenyl]methanone) or the allosteric inhibitor SCH-202676 (N-(2,3-diphenyl-1,2,4-thiadiazol-5(2H)-ylidene)methanamine). CPA itself was able to internalize 25% and 40% of the receptors at a concentration of 400 nM or 4 muM, respectively. Addition of either PD 81,723 or SCH-202676 alone had no effect on internalization. However, with PD 81,723 a slight amount of internalization was obtained already at 40 nM of CPA and at 400 nM CPA 59% of the receptors internalized. SCH-202676 on the other hand effectively prevented CPA-induced internalization of the receptor.
- Published
- 2005
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30. Selective interface detection: mapping binding site contacts in membrane proteins by NMR spectroscopy.
- Author
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Kiihne SR, Creemers AF, de Grip WJ, Bovee-Geurts PH, Lugtenburg J, and de Groot HJ
- Subjects
- Binding Sites, Carbon Isotopes, Peptide Mapping, Protons, Receptors, G-Protein-Coupled metabolism, Retinaldehyde metabolism, Rhodopsin metabolism, Nuclear Magnetic Resonance, Biomolecular methods, Receptors, G-Protein-Coupled chemistry, Retinaldehyde chemistry, Rhodopsin chemistry
- Abstract
Intermolecular contact surfaces are important regions where specific interactions mediate biological function. We introduce a new magic angle spinning solid state NMR technique, dubbed "selective interface detection spectroscopy" (SIDY). In this technique, 13C-attached protons (1Hlig) are dephased by 1H-13C REDOR. A spin diffusion period is then used to enhance long distance 1H-1H correlations, and the results are detected by a short period of cross polarization to the 13C isotope labels. This SIDY approach allows selective observation of the interface between 13C-labeled and unlabeled moieties. We have used SIDY to probe the ligand-protein binding surface between a uniformly isotopically labeled ligand cofactor, U-13C20-11-cis-retinal, and its binding site in rhodopsin (Rho), an unlabeled, membrane-embedded G-protein coupled receptor (GPCR). The observed 1HGPCR-13Clig correlations indicate multiple close contacts between the protein and the ionone ring of the ligand, in agreement with binding studies. The polyene tail of the ligand displays fewer strong correlations in the SIDY spectrum. Some correlations can be assigned to the protein side chains lining the ligand binding site, in agreement with the crystal structure.
- Published
- 2005
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31. Analysis of histamine and modeling of ligand-receptor interactions in the histamine H(1) receptor for Magic Angle Spinning NMR studies.
- Author
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Prasad Ratnala VR, Hulsbbergen FB, de Groot HJ, and de Grip WJ
- Subjects
- Biophysical Phenomena, Biophysics, Computational Biology, Electrophoresis, Polyacrylamide Gel, Humans, Information Theory, Isotope Labeling, Magnetic Resonance Spectroscopy, Protein Conformation, Tissue Distribution, Histamine chemistry, Receptors, Histamine H1 chemistry
- Abstract
Objective and Design: Investigation of the principles of ligand-receptor interaction in histamine receptors can help to provide a solid foundation for structure-based drug design. Stable isotope labelling of the ligand 'Histamine' has been performed and 1D (13)C CP MAS and 2D Radio Frequency Dipolar Recoupling (RFDR) spectra for the ligand are presented. Hyperfine signals were well spread and did not suffer from any sizable line broadening. The production of H(1) receptor for Magic Angle Spinning NMR studies is currently in progress., Treatment: An agonist binding domain is proposed using homology modeling, database searches and mutagenesis data for the H(1) receptor., Methods: Homology modeling, Database searches for Expressed sequence Tag (ESTs), Magic Angle Spinning Nuclear Magnetic Resonance analysis of the ligand histamine., Results: The three-dimensional receptor model and mutagenesis studies suggest that the amine of the agonist histamine may form an ion pair with the TM III Asp, whereas the imidazole ring of histamine may associate with TM V Asp and Thr., Conclusions: Homology modeling studies confirms the absence of TM VIII in the H(1) receptor. According to the model the histamine in particular interacts with the transmembrane (TM) regions of the H(1) receptor structure, in particular TM helix III and V. This is in line with recent mutagenesis studies. Database search methods for ESTs have been used for electronic prediction of tissue distribution of H(1) receptor expression. The results indicate that the H(1) expression is highest in heart and skeletal muscle, which may be of importance for drug targeting.
- Published
- 2003
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32. Identification of circadian brain photoreceptors mediating photic entrainment of behavioural rhythms in lizards.
- Author
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Pasqualetti M, Bertolucci C, Ori M, Innocenti A, Magnone MC, De Grip WJ, Nardi I, and Foà A
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Behavior, Animal physiology, Blotting, Southern, Darkness, Immunohistochemistry, Light, Lizards, Male, Molecular Sequence Data, Motor Activity physiology, Reverse Transcriptase Polymerase Chain Reaction, Rod Opsins biosynthesis, Brain physiology, Circadian Rhythm physiology, Retinal Cone Photoreceptor Cells physiology
- Abstract
We have shown previously that in ruin lizards (Podarcis sicula) the ablation of all known photoreceptive structures (lateral eyes, pineal and parietal eye) in the same individual animal does not prevent entrainment of their circadian locomotor rhythms to light. The present study was aimed at identifying the circadian brain photoreceptors mediating entrainment. For this purpose, we looked for opsin expression in the brain by means of immunocytochemistry. Using anti-cone-opsin antiserum CERN 874 we have localized photoreceptors in the periventricular area of hypothalamus, near the third cerebral ventricle. We also cloned a brain opsin cDNA that, on the basis of the deduced amino acid sequence, appears to belong to the RH2 class of cone-opsins. We named the cloned cone-opsin Ps-RH2. To examine whether brain cone-opsins mediate photic entrainment of circadian locomotor rhythms, we performed post-transcriptional inactivation experiments by injecting an expression eukaryotic vector transcribing the antisense cone-opsin Ps-RH2 mRNA in the third cerebral ventricle of pinealectomized-retinectomized lizards previously entrained to a light-dark (LD) cycle. Injections of the antisense construct abolished photic entrainment of circadian locomotor rhythms of pinealectomized-retinectomized lizards to the LD cycle for 6-9 days. CERN 874 completely failed to label cells within the periventricular area of hypothalamus of brains injected with antisense construct. Thus, abolishment of photic entrainment is due to inactivation of endogenous brain cone-opsins mRNA. The present results demonstrate for the first time in a vertebrate that brain cone-opsins are part of a true circadian brain photoreceptor participating in photic entrainment of behavioural rhythms.
- Published
- 2003
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33. Large-scale purification of functional recombinant human aquaporin-2.
- Author
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Werten PJ, Hasler L, Koenderink JB, Klaassen CH, de Grip WJ, Engel A, and Deen PM
- Subjects
- Amino Acid Sequence, Animals, Aquaporin 2, Aquaporin 6, Baculoviridae metabolism, Biochemistry methods, Bioreactors, Cell Line, DNA, Complementary metabolism, Histidine chemistry, Humans, Immunoblotting, Immunohistochemistry, Insecta, Molecular Sequence Data, Protein Conformation, Time Factors, Urea pharmacology, Aquaporins chemistry, Aquaporins isolation & purification, Recombinant Proteins chemistry, Recombinant Proteins isolation & purification
- Abstract
The homotetrameric aquaporin-2 (AQP2) water channel is essential for the concentration of urine and of critical importance in diseases with water dysregulation, such as nephrogenic diabetes insipidus, congestive heart failure, liver cirrhosis and pre-eclampsia. The structure of human AQP2 is a prerequisite for understanding its function and for designing specific blockers. To obtain sufficient amounts of AQP2 for structural analyses, we have expressed recombinant his-tagged human AQP2 (HT-AQP2) in the baculovirus/insect cell system. Using the protocols outlined in this study, 0.5 mg of pure HT-AQP2 could be obtained per liter of bioreactor culture. HT-AQP2 had retained its homotetrameric structure and exhibited a single channel water permeability of 0.93+/-0.03x10(-13) cm3/s, similar to that of other AQPs. Thus, the baculovirus/insect cell system allows large-scale expression of functional recombinant human AQP2 that is suitable for structural studies.
- Published
- 2001
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34. Ultra-high-field MAS NMR assay of a multispin labeled ligand bound to its G-protein receptor target in the natural membrane environment: electronic structure of the retinylidene chromophore in rhodopsin.
- Author
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Verhoeven MA, Creemers AF, Bovee-Geurts PH, De Grip WJ, Lugtenburg J, and de Groot HJ
- Subjects
- Animals, Binding Sites, Carbon Isotopes, Cattle, Cell Membrane metabolism, Ligands, Models, Molecular, Retinal Pigments metabolism, Retinoids metabolism, Schiff Bases, GTP-Binding Proteins metabolism, Nuclear Magnetic Resonance, Biomolecular methods, Retinal Pigments chemistry, Retinoids chemistry, Spin Labels
- Abstract
11-Z-[8,9,10,11,12,13,14,15,19,20-(13)C10]Retinal prepared by total synthesis is reconstituted with opsin to form rhodopsin in the natural lipid membrane environment. The 13C shifts are assigned with magic angle spinning NMR dipolar correlation spectroscopy in a single experiment and compared with data of singly labeled retinylidene ligands in detergent-solubilized rhodopsin. The use of multispin labeling in combination with 2-D correlation spectroscopy improves the relative accuracy of the shift measurements. We have used the chemical shift data to analyze the electronic structure of the retinylidene ligand at three levels of understanding: (i) by specifying interactions between the 13C-labeled ligand and the G-protein-coupled receptor target, (ii) by making a charge assessment of the protonation of the Schiff base in rhodopsin, and (iii) by evaluating the total charge on the carbons of the retinylidene chromophore. In this way it is shown that a conjugation defect is the predominant ground-state property governing the molecular electronics of the retinylidene chromophore in rhodopsin. The cumulative chemical shifts at the odd-numbered carbons (Delta(sigma)odd) of 11-Z-protonated Schiff base models relative to the unprotonated Schiff base can be used to measure the extent of delocalization of positive charge into the polyene. For a series of 11-Z-protonated Schiff base models and rhodopsin, Delta(sigma)odd appears to correlate linearly with the frequency of maximum visible absorption. Since rhodopsin has the largest value of Delta(sigma)odd, the data contribute to existing and converging spectroscopic evidence for a complex counterion stabilizing the protonated Schiff base in the binding pocket.
- Published
- 2001
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35. Determination of a molecular torsional angle in the metarhodopsin-I photointermediate of rhodopsin by double-quantum solid-state NMR.
- Author
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Feng X, Verdegem PJ, Edén M, Sandström D, Lee YK, Bovee-Geurts PH, de Grip WJ, Lugtenburg J, de Groot HJ, and Levitt MH
- Subjects
- Animals, Cattle, Light, Models, Chemical, Molecular Conformation, Nuclear Magnetic Resonance, Biomolecular methods, Retinoids chemistry, Retinoids radiation effects, Rhodopsin chemistry, Rhodopsin radiation effects, Signal Transduction, Rhodopsin analogs & derivatives
- Abstract
We present a solid-state NMR study of metarhodopsin-1, the pre-discharge intermediate of the photochemical signal transduction cascade of rhodopsin, which is the 41 kDa integral membrane protein that triggers phototransduction in vertebrate rod cells. The H-C10-C11-H torsional angles of the retinylidene chromophore in bovine rhodopsin and metarhodopsin-I were determined simultaneously in the photo-activated membrane-bound state, using double-quantum heteronuclear local field spectroscopy. The torsional angles were estimated to be [phi] = 160+/-10 degrees for rhodopsin and phi = 180+/-25 degrees for metarhodopsin-I. The result is consistent with current models of the photo-induced conformational transitions in the chromophore, in which the 11-Z retinal ground state is twisted, while the later photointermediates have a planar all-E conformation.
- Published
- 2000
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36. Eye lens alphaA- and alphaB-crystallin: complex stability versus chaperone-like activity.
- Author
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van Boekel MA, de Lange F, de Grip WJ, and de Jong WW
- Subjects
- Anilino Naphthalenesulfonates, Animals, Cattle, Chemical Precipitation, Chromatography, Gel, Fluorescent Dyes, Insulin chemistry, Recombinant Proteins chemistry, Spectroscopy, Fourier Transform Infrared, Temperature, Urea, Crystallins chemistry, Molecular Chaperones chemistry
- Abstract
The major lens protein alpha-crystallin is composed of two related types of subunits, alphaA- and alphaB-crystallin, of which the former is essentially lens-restricted, while the latter also occurs in various other tissues. With regard to their respective chaperone capacities, it has been reported that homomultimeric alphaA-crystallin complexes perform better in preventing thermal aggregation of proteins, while alphaB-crystallin complexes protect more efficiently against reduction-induced aggregation of proteins. Here, we demonstrate that this seeming discrepancy is solved when the reduction assay is performed at increasing temperatures: above 50 degrees C alphaA- performs better than alphaB-crystallin also in this assay. This inversion in protective capacity might relate to the greater resistance of alphaA-crystallin to heat denaturation. Infrared spectroscopy, however, revealed that this is not due to a higher thermostability of alphaA-crystallin's secondary structure. Also the accessible hydrophobic surfaces do not account for the chaperoning differences of alphaA- and alphaB-crystallin, since regardless of the experimental temperature alphaB-crystallin displays a higher hydrophobicity. It is argued that the greater complex stability of alphaA-crystallin, as evident upon urea denaturation, and the higher chaperone capacity of alphaB-crystallin at physiological temperatures reflect the evolutionary compromise to obtain an optimal functioning of heteromeric alpha-crystallin as a lens protein.
- Published
- 1999
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37. Retinylidene ligand structure in bovine rhodopsin, metarhodopsin-I, and 10-methylrhodopsin from internuclear distance measurements using 13C-labeling and 1-D rotational resonance MAS NMR.
- Author
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Verdegem PJ, Bovee-Geurts PH, de Grip WJ, Lugtenburg J, and de Groot HJ
- Subjects
- Animals, Carbon Isotopes, Cattle, Ligands, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular methods, Protein Isoforms chemistry, Protein Isoforms metabolism, Rotation, Spectrophotometry, Ultraviolet, Retinoids chemistry, Retinoids metabolism, Rhodopsin analogs & derivatives, Rhodopsin chemistry, Rhodopsin metabolism
- Abstract
Rhodopsin is the G-protein coupled photoreceptor that initiates the rod phototransduction cascade in the vertebrate retina. Using specific isotope enrichment and magic angle spinning (MAS) NMR, we examine the spatial structure of the C10-C11=C12-C13-C20 motif in the native retinylidene chromophore, its 10-methyl analogue, and the predischarge photoproduct metarhodopsin-I. For the rhodopsin study 11-Z-[10,20-(13)C(2)]- and 11-Z-[11,20-(13)C(2)]-retinal were synthesized and incorporated into bovine opsin while maintaining a natural lipid environment. The ligand is covalently bound to Lys(296) in the photoreceptor. The C10-C20 and C11-C20 distances were measured using a novel 1-D CP/MAS NMR rotational resonance experimental procedure that was specifically developed for the purpose of these measurements [Verdegem, P. J. E., Helmle, M., Lugtenburg, J., and de Groot, H. J. M. (1997) J. Am. Chem. Soc. 119, 169]. We obtain r(10,20) = 0.304 +/- 0.015 nm and r(11,20) = 0.293 +/- 0.015 nm, which confirms that the retinylidene is 11-Z and shows that the C10-C13 unit is conformationally twisted. The corresponding torsional angle is about 44 degrees as indicated by Car-Parrinello modeling studies. To increase the nonplanarity in the chromophore, 11-Z-[10,20-(13)C(2)]-10-methylretinal and 11-Z-[(10-CH(3)), 13-(13)C(2)]-10-methylretinal were prepared and incorporated in opsin. For the resulting analogue pigment r(10,20) = 0.347 +/- 0.015 nm and r((10)(-)(CH)()3())(,)(13) = 0.314 +/- 0.015 nm were obtained, consistent with a more distorted chromophore. The analogue data are in agreement with the induced fit principle for the interaction of opsin with modified retinal chromophores. Finally, we determined the intraligand distances r(10,20) and r(11,20) also for the photoproduct metarhodopsin-I, which has a relaxed all-E structure. The results (r(10,20) >/= 0.435 nm and r(11,20) = 0.283 +/- 0.015 nm) fully agree with such a relaxed all-E structure, which further validates the 1-D rotational resonance technique for measuring intraligand distances and probing ligand structure. As far as we are aware, these results represent the first highly precise distance determinations in a ligand at the active site of a membrane protein. Overall, the MAS NMR data indicate a tight binding pocket, well defined to bind specifically only one enantiomer out of four possibilities and providing a steric complement to the chromophore in an ultrafast ( approximately 200 fs) isomerization process.
- Published
- 1999
- Full Text
- View/download PDF
38. Solid state 15N NMR evidence for a complex Schiff base counterion in the visual G-protein-coupled receptor rhodopsin.
- Author
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Creemers AF, Klaassen CH, Bovee-Geurts PH, Kelle R, Kragl U, Raap J, de Grip WJ, Lugtenburg J, and de Groot HJ
- Subjects
- Animals, Binding Sites, Cattle, Isotope Labeling, Models, Chemical, Nitrogen Isotopes, Nuclear Magnetic Resonance, Biomolecular methods, Retinaldehyde chemistry, Schiff Bases chemistry, Spectrophotometry, Ultraviolet, Stereoisomerism, GTP-Binding Proteins chemistry, Photoreceptor Cells, Vertebrate chemistry, Rhodopsin chemistry
- Abstract
Using the baculovirus/Sf9 cell expression system, we have incorporated 99% 15N-enriched [alpha,epsilon-15N2]-L-lysine into the rod visual pigment rhodopsin. We have subsequently investigated the protonated Schiff base (pSB) linkage in the [alpha, epsilon-15N2]Lys-rhodopsin with cross-polarization magic angle spinning (CP/MAS) 15N NMR. The Schiff base (SB) 15N in [alpha, epsilon-15N2]Lys-rhodopsin resonates with an isotropic shift sigmaI of 155.9 ppm, relative to 5.6 M 15NH4Cl. This suggests that the SB in rhodopsin is protonated and stabilized by a complex counterion. The 15N shifts of retinal SBs correlate with the energy difference between the ground and excited states and the frequency of maximum visible absorbance, numax, associated with the pi-pi transition of the polyene chromophore. Experimental modeling of the relation between the numax and the size of the counterion with a set of pSBs provides strong evidence that the charged chromophore in rhodopsin is stabilized by a counterion with an estimated effective center-center distance (deff) between the counterion and the pSB of 0.43 +/- 0.01 nm. While selected prokaryotic proteins and complexes have been labeled before, this is the first time to our knowledge that a 15N-labeled eukaryotic membrane protein has been generated in sufficient amount for such NMR investigations.
- Published
- 1999
- Full Text
- View/download PDF
39. Erythrocyte aging in the demented elderly: a fluctuating process?
- Author
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Bosman GJ, Van der Linden PA, Bartholomeus IG, De Man AJ, De Grip WJ, and Van Kalmthout PJ
- Subjects
- Adult, Aged, Aged, 80 and over, Anion Exchange Protein 1, Erythrocyte metabolism, Dementia immunology, Humans, Immunoglobulin G analysis, Dementia blood, Erythrocyte Aging physiology
- Abstract
Measurement of erythrocyte aging parameters in patients with dementia indicates that an Alzheimer-related disturbance of the erythrocyte aging process may not be detectable until in the more advanced stages of the disease. Also, a strong fluctuation in the values of erythrocyte aging parameters, over a period of 15 months, was observed in patients with dementia, but not in age-matched control donors. This fluctuation was independent of the type and stage of dementia, and its cause remains to be elucidated. Such variability hampers the use of erythrocyte aging characteristics for the diagnosis of dementia. On the other hand, the aging-related erythrocyte IgG content may be a sensitive biomarker for disturbed systemic homeostasis in the elderly.
- Published
- 1998
- Full Text
- View/download PDF
40. Melanopsin: An opsin in melanophores, brain, and eye.
- Author
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Provencio I, Jiang G, De Grip WJ, Hayes WP, and Rollag MD
- Subjects
- Amino Acid Sequence, Animals, Cells, Cultured, DNA, Complementary chemistry, In Situ Hybridization, Molecular Sequence Data, Protein Structure, Secondary, Rod Opsins analysis, Rod Opsins genetics, Sequence Alignment, Xenopus laevis, Brain Chemistry, Eye chemistry, Melanophores chemistry, Rod Opsins chemistry
- Abstract
We have identified an opsin, melanopsin, in photosensitive dermal melanophores of Xenopus laevis. Its deduced amino acid sequence shares greatest homology with cephalopod opsins. The predicted secondary structure of melanopsin indicates the presence of a long cytoplasmic tail with multiple putative phosphorylation sites, suggesting that this opsin's function may be finely regulated. Melanopsin mRNA is expressed in hypothalamic sites thought to contain deep brain photoreceptors and in the iris, a structure known to be directly photosensitive in amphibians. Melanopsin message is also localized in retinal cells residing in the outermost lamina of the inner nuclear layer where horizontal cells are typically found. Its expression in retinal and nonretinal tissues suggests a role in vision and nonvisual photoreceptive tasks, such as photic control of skin pigmentation, pupillary aperture, and circadian and photoperiodic physiology.
- Published
- 1998
- Full Text
- View/download PDF
41. Neuronal anion exchange proteins in Alzheimer's disease pathology.
- Author
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Bosman GJ, Renkawek K, Van Workum FP, Bartholomeus IG, Marini S, and De Grip WJ
- Subjects
- Brain cytology, Brain pathology, Cell Membrane metabolism, Cytoskeleton metabolism, Humans, Hydrogen-Ion Concentration, Immunohistochemistry, Nerve Degeneration metabolism, Nerve Degeneration pathology, Neurons pathology, Reference Values, Alzheimer Disease metabolism, Alzheimer Disease pathology, Antiporters metabolism, Brain metabolism, Neurons metabolism
- Abstract
Anion exchange (AE) proteins are present in human neurons in the brain. Immunohistochemical data indicate that their apparent expression level increases with age, and especially with degeneration in Alzheimer's disease-affected brain areas. The increase in immunoreactivity is probably caused by changes in AE structure that lead to an increased accessibility of hitherto hidden epitopes. These epitopes correspond to regions in the membrane domain that are involved in generation of senescent cell-specific antigen from AE1 in aging erythrocytes. Elucidation of the molecular nature of these changes and the underlying mechanisms will lead to insight in the processes that govern aging- and degeneration-associated perturbation of membrane integrity. The functional consequences of changes in AE structure may range from acidosis and disturbance of cytoskeleton integrity to untimely or impaired recognition of neurons by microglia.
- Published
- 1998
42. Macroscopic orientation of natural and model membranes for structural studies.
- Author
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Gröbner G, Taylor A, Williamson PT, Choi G, Glaubitz C, Watts JA, de Grip WJ, and Watts A
- Subjects
- Animals, Anion Exchange Protein 1, Erythrocyte chemistry, Cattle, Deuterium, Magnetic Resonance Spectroscopy, Membrane Proteins chemistry, Microscopy, Electron, Phospholipids chemistry, Phosphorus Isotopes, Receptors, Nicotinic chemistry, Retinaldehyde chemistry, Rhodopsin chemistry, Ultracentrifugation, Erythrocyte Membrane chemistry, Lipid Bilayers chemistry, Membranes chemistry
- Abstract
One approach for obtaining high-resolution structural and functional information for biomembranes and their proteins is by static solid-state NMR of oriented systems. Here, a general procedure to align fully functional biological membranes containing large membrane proteins (Mr >30,000) is described. The method, based on the isopotential spin-dry ultracentrifugation technique, relies on the centrifugation of membrane fragments onto a support with simultaneous, or subsequent, partial evaporation of the solvent which aids alignment. The quality of orientation, as shown by the mosaic spread of the samples, was monitored by static solid-state 31P NMR for the phospholipids and by 2H NMR for a deuterated retinal in bovine rhodopsin. The generality of this method is demonstrated with three different membranes containing bovine rhodopsin in reconstituted bilayers, natural membranes with the red cell anion exchange transport protein in erythrocytes, band 3, and the nicotinic acetylcholine receptor., (Copyright 1997 Academic Press.)
- Published
- 1997
- Full Text
- View/download PDF
43. Heterologous expression of rat epitope-tagged histamine H2 receptors in insect Sf9 cells.
- Author
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Beukers MW, Klaassen CH, De Grip WJ, Verzijl D, Timmerman H, and Leurs R
- Subjects
- Adenylyl Cyclases metabolism, Animals, Baculoviridae genetics, Blotting, Western, Cell Line, Transformed, Cholesterol pharmacology, Cimetidine analogs & derivatives, Cimetidine metabolism, Cimetidine pharmacology, Cyclic AMP biosynthesis, Cyclodextrins pharmacology, Epitopes immunology, Fluorescent Antibody Technique, Guanidines metabolism, Histamine H2 Antagonists metabolism, Histamine H2 Antagonists pharmacology, Histidine immunology, Insecta cytology, Insecta metabolism, Insecta virology, Microscopy, Confocal, Oligonucleotides, Piperidines metabolism, Ranitidine metabolism, Ranitidine pharmacology, Rats, Receptors, Histamine H2 genetics, Receptors, Histamine H2 immunology, Receptors, Histamine H2 metabolism, Transfection, Receptors, Histamine H2 biosynthesis, beta-Cyclodextrins
- Abstract
1. Rat histamine H2 receptors were epitope-tagged with six histidine residues at the C-terminus to allow immunological detection of the receptor. Recombinant baculoviruses containing the epitope-tagged H2 receptor were prepared and were used to infect insect Sf9 cells. 2. The His-tagged H2 receptors expressed in insect Sf9 cells showed typical H2 receptor characteristics as determined with [125I]-aminopotentidine (APT) binding studies. 3. In Sf9 cells expressing the His-tagged H2 receptor histamine was able to stimulate cyclic AMP production 9 fold (EC50=2.1+/-0.1 microM) by use of the endogenous signalling pathway. The classical antagonists cimetidine, ranitidine and tiotidine inhibited histamine induced cyclic AMP production with Ki values of 0.60+/-0.43 microM, 0.25+/-0.15 microM and 28+/-7 nM, respectively (mean+/-s.e.mean, n=3). 4. The expression of the His-tagged H2 receptors in infected Sf9 cells reached functional levels of 6.6+/-0.6 pmol mg(-1) protein (mean+/-s.e.mean, n=3) after 3 days of infection. This represents about 2 x 10(6) copies of receptor/cell. Preincubation of the cells with 0.03 mM cholesterol-beta-cyclodextrin complex resulted in an increase of [125I]-APT binding up to 169+/-5% (mean+/-s.e.mean, n=3). 5. The addition of 0.03 mM cholesterol-beta-cyclodextrin complex did not affect histamine-induced cyclic AMP production. The EC50 value of histamine was 3.1+/-1.7 microM in the absence of cholesterol-beta-cyclodextrin complex and 11.1+/-5.5 microM in the presence of cholesterol-beta-cyclodextrin complex (mean+/-s.e.mean, n=3). Also, the amount of cyclic AMP produced in the presence of 100 microM histamine was identical, 85+/-18 pmol/10(6) cells in the absence and 81+/-11 pmol/10(6) cells in the presence of 0.03 mM cholesterol-beta-cyclodextrin complex (mean+/-s.e.mean, n=3). 6. Immunofluorescence studies with an antibody against the His-tag revealed that the majority of the His-tagged H2 receptors was localized inside the insect Sf9 cells, although plasma membrane labelling could be identified as well. 7. These experiments demonstrate the successful expression of His-tagged histamine H2 receptors in insect Sf9 cells. The H2 receptors couple functionally to the insect cell adenylate cyclase. However, our studies with cholesterol complementation and with immunofluorescent detection of the His-tag reveal that only a limited amount of H2 receptor protein is functional. These functional receptors are targeted to the plasma membrane.
- Published
- 1997
- Full Text
- View/download PDF
44. Erythrocyte aging characteristics in elderly individuals with beginning dementia.
- Author
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Bosman GJ, Janzing JG, Bartholomeus IG, De Man AJ, Zitman FG, and De Grip WJ
- Subjects
- Aged, Aged, 80 and over, Female, Humans, Immunohistochemistry, Male, Time Factors, Aging metabolism, Alzheimer Disease blood, Dementia, Multi-Infarct blood, Erythrocytes metabolism
- Abstract
An increase in erythrocyte-bound IgG and enhanced breakdown of the erythrocyte anion exchanger band 3, characteristics of normal erythrocyte aging are observed in old, healthy individuals when compared with young donors. These findings indicate that the rate of cellular aging increases with organismal aging. Results from previous studies on the same parameters have suggested that the erythrocyte aging process is disturbed in patients in advanced stages of Alzheimer type dementia, and in individuals with Down's syndrome who show no signs of dementia. In this study we find no changes in erythrocyte aging parameters in old individuals in beginning stages of dementia of various etiologies. We conclude that, in general, characteristics of disturbed erythrocyte aging cannot serve as presymptomatic markers of Alzheimer-type dementia.
- Published
- 1997
- Full Text
- View/download PDF
45. The effect of ethyldeshydroxy-sparsomycin and cisplatin on the intracellular glutathione level and glutathione S-transferase activity.
- Author
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Hofs HP, Wagener TD, de Valk-Bakker V, van Rennes H, Doesburg WH, Ottenheijm HC, and de Grip WJ
- Subjects
- Animals, Glutathione analogs & derivatives, Glutathione Disulfide, Kinetics, Leukemia L1210 drug therapy, Leukemia L1210 enzymology, Leukemia L1210 metabolism, Mice, Sparsomycin pharmacology, Tumor Cells, Cultured drug effects, Antineoplastic Agents pharmacology, Cisplatin pharmacology, Glutathione metabolism, Glutathione Transferase drug effects, Glutathione Transferase metabolism, Sparsomycin analogs & derivatives
- Abstract
Ethyldeshydroxy-sparsomycin (EdSm) is a ribosomal protein synthesis inhibitor which synergistically enhances the antitumor activity of cisplatin against L1210 leukemia in vivo. Because cellular glutathione (GSH) and glutathione S-transferases (GST) are reported to interfere with the antitumor activity of cisplatin, we analyzed the effect of EdSm and cisplatin on GSH and GST activity in selected tumor cells. For this purpose we used three murine leukemia tumors with different sensitivities towards EdSm and cisplatin: L1210-WT, sensitive to both drugs, L1210-Sm, resistant to EdSm, and L1210-CDDP, resistant to cisplatin. No significant differences were detectable between these three cell lines regarding the population doubling time, the cell size, and the cellular level of protein and glutathione. Neither of the resistant L1210 subclones showed P-glycoprotein expression. Drug exposure, however, changed the intracellular dynamics. Exposure to EdSm strongly decreased the amount of cellular protein, decreased the overall GST activity and led to GSH depletion, whereas exposure to cisplatin induced a rise in the amount of protein, in GSH, and in the total GST activity. These effects are dose-dependent and correlate well with the sensitivity of the tumor cells for EdSm or cisplatin. In addition, exposure to EdSm lowered the V(max) of GST in L1210-WT and L1210-Sm; however, in L1210-CDDP both the V(max) and the K(m) were increased. That this was not a direct effect of EdSm on GST was shown in a cell-free system, where EdSm did not influence the GST activity nor could it act as a substrate for GST. Our results suggest that the synergistic combination of EdSm and cisplatin might be explained by EdSm switching off the cellular detoxification mechanism for cisplatin, i.e. by inhibition of de novo synthesis and subsequent depletion of GSH and GST.
- Published
- 1997
- Full Text
- View/download PDF
46. Anion exchange proteins and regulation of intracellular pH in cultured rat astrocytes and neurones.
- Author
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Bosman GJ, Renkawek K, Reijnen-Aalbers A, and De Grip WJ
- Subjects
- Animals, Cells, Cultured, Hydrogen-Ion Concentration, Immunohistochemistry, Rats, Rats, Wistar, Anions pharmacology, Antiporters pharmacology, Astrocytes drug effects, Neurons drug effects
- Abstract
We used primary cultures of rat hippocampal tissue to estimate the contribution of anion exchange (AE) proteins to the regulation of intracellular pH in neurones and astrocytes. After induction of acidosis, neonatal rat astrocytes were able to restore the intracellular pH in the absence of extracellular bicarbonate. Neonatal neurones, however, were able to recover from acidosis only when bicarbonate was present in the extracellular medium. This recovery was inhibited by inhibition of anion exchange and was independent of the presence of sodium ions. Antibodies against AE proteins reacted predominantly with neurones. These data suggest that neurones in particular are dependent on functional AE proteins for the maintenance of their intracellular pH.
- Published
- 1997
- Full Text
- View/download PDF
47. Involvement of neuronal anion exchange proteins in cell death in Alzheimer's disease.
- Author
-
Bosman GJ, Renkawek K, Van Workum FP, Bartholomeus IG, and De Grip WJ
- Subjects
- Aging metabolism, Ankyrins analysis, Ankyrins immunology, Antibody Specificity, Antiporters analysis, Astrocytes chemistry, Bicarbonates metabolism, Cell Death physiology, Chlorides metabolism, Humans, Hydrogen-Ion Concentration, Immunoblotting, Membrane Proteins analysis, Membrane Proteins physiology, Neuroblastoma, Neurons chemistry, Neurons cytology, Neurons physiology, Tumor Cells, Cultured chemistry, Tumor Cells, Cultured physiology, Alzheimer Disease metabolism, Antiporters physiology
- Abstract
Anion exchange (AE) proteins are present in human neurons in the brain. Immunohistochemical data indicate that their apparent expression level increases with age, and especially with degeneration in Alzheimer's disease-affected brain areas. The increase in immunoreactivity is probably caused by changes in AE structure that lead to an increased accessibility of hitherto hidden epitopes. These epitopes correspond to regions in the membrane domain that are involved in generation of senescent cell-specific antigen from AE1 in aging erythrocytes. Elucidation of the molecular nature of these changes and the underlying mechanisms, will lead to insight in the processes that govern aging- and degeneration-associated perturbation of membrane integrity. AE-mediated chloride/bicarbonate exchange is a major component in the regulation of intracellular pH. The functional consequences of changes in AE structure may range from acidosis, disturbance of cytoskeleton integrity, and untimely or impaired recognition of cells by components of the immune system, such as microglia. A molecular and physiological description of these changes will establish AE proteins as valuable tools in elucidating the processes of normal aging, and the disturbances in aging-related diseases such as Alzheimer's disease.
- Published
- 1997
- Full Text
- View/download PDF
48. Implications of aging- and degeneration-related changes in anion exchange proteins for the maintenance of neuronal homeostasis.
- Author
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Bosman GJ, Engbersen A, Vollaard CH, Bartholomeus IG, Pistorius AM, Renkawek K, and De Grip WJ
- Subjects
- Adult, Alzheimer Disease pathology, Anion Exchange Protein 1, Erythrocyte metabolism, Ankyrins analysis, Antiporters genetics, Antiporters metabolism, Brain metabolism, Brain pathology, Cell Membrane metabolism, Cytoskeleton metabolism, Erythrocyte Aging, Gene Expression, Homeostasis, Humans, Hydrogen-Ion Concentration, Immunohistochemistry, Nerve Degeneration, Neurons chemistry, Protein Conformation, Protein Structure, Secondary, Spectroscopy, Fourier Transform Infrared, Tumor Cells, Cultured, Alzheimer Disease metabolism, Anion Exchange Protein 1, Erythrocyte chemistry, Antiporters chemistry, Brain Chemistry, Neurons metabolism
- Abstract
Fourier-transform infrared spectroscopy was applied to examine the nature and extent of changes in membrane composition and structure during the aging process of the human erythrocyte. Analysis of the Amide I region (1700-1600 cm-1) indicates an aging-related decrease in alpha-helical structure with a concomitant increase in beta-structure. These changes can be explained by structural changes in the erythrocyte anion exchanger (band 3 or AE1) molecules, that may be caused by fragmentation, but not by aggregation. Immunohistochemical analysis of human brain tissue shows an increase in neuronal AE protein expression with age and suggests an additional increase in Alzheimer's disease. Biochemical analyses indicate that the latter may be caused by conformational changes in the AE membrane domain that are similar to those observed in AE1 during erythrocyte aging. AE proteins provide a binding site for the cytoskeleton in neurons, and AE-catalyzed chloride/bicarbonate exchange plays a major role in maintenance of neuronal pH. Thus, changes in AE structure are likely to contribute to loss of neuron homeostasis during aging and in neurodegenerative diseases.
- Published
- 1996
49. Effect of carboxyl mutations on functional properties of bovine rhodopsin.
- Author
-
DeCaluwé GL, Bovee-Geurts PH, Rath P, Rothschild KJ, and de Grip WJ
- Subjects
- Animals, Baculoviridae, Cattle, Kinetics, Mutagenesis, Site-Directed, Photolysis, Point Mutation, Recombinant Proteins biosynthesis, Recombinant Proteins chemistry, Recombinant Proteins metabolism, Retinal Rod Photoreceptor Cells metabolism, Rhodopsin analogs & derivatives, Rhodopsin biosynthesis, Spectrophotometry, Spodoptera, Transfection, Rhodopsin chemistry, Rhodopsin metabolism
- Abstract
Bovine rod rhodopsin and membrane-carboxyl group mutants are expressed using the recombinant baculovirus expression system. Biosynthesis of wild-type and the mutant D83N is normal. The mutations E122L and E134D/R affect glycosylation and translocation. After regeneration, purification and reconstitution in retina lipids a wild-type photosensitive pigment with spectral and photolytic properties identical to native bovine rod rhodopsin is generated. Only the mutations D83N and E122L affect the spectral properties and then only slightly. All mutations induce a shift in the Meta I<==>Meta II equilibrium towards Meta I (E134D/R) or Meta II (D83N, E122L). FT-IR analysis shows that the mutation E134D/R does not significantly affect the carboxyl-vibration region but, in particular in the case of E134R, affects secondary structural changes upon Meta II formation. E122L also has an effect on secondary structural changes and in addition eliminates a negative band at 1728 cm-1. The mutation D83N removes a pair of negative/positive bands from the carboxyl-vibration region, indicating that Asp83 stays protonated upon formation of Meta II but undergoes a change in hydrogen bonding.
- Published
- 1995
- Full Text
- View/download PDF
50. Influence of aging and neurodegenerative disease on changes in band 3-like proteins in white blood cells.
- Author
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Bosman GJ, Steetzel BD, De Man AJ, Van Kalmthout PJ, Visser FE, and De Grip WJ
- Subjects
- Adult, Aged, Aged, 80 and over, Alzheimer Disease blood, Blood Donors, Case-Control Studies, Dementia, Multi-Infarct blood, Down Syndrome blood, Humans, Immunoblotting, Middle Aged, Aging blood, Anion Exchange Protein 1, Erythrocyte metabolism, Leukocytes metabolism, Membrane Proteins blood, Nerve Degeneration physiology
- Abstract
Fluorescent microspheres were used to measure antibody-induced capping of leukocyte membrane proteins that are immunologically related to band 3, the anion exchanger of the erythrocyte. The degree of capping was found to increase with donor age. Surface labeling and capping characteristics of cells from healthy, age-matched controls were not different from those from patients with Alzheimer's disease, multi-infarct dementia, and Down's syndrome. Immunoblots, however, indicated increased expression and/or breakdown of band 3-like proteins in leukocytes from patients when compared with young and old control donors. These findings emphasize the possible involvement of band 3-like proteins of nucleated cells in aging and disease.
- Published
- 1995
- Full Text
- View/download PDF
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