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The study of biomolecules and their interactions in their natural environment requires increasingly sophisticated technological and methodological developments. The complexity of these developments is due, among other things, to the nature of these molecules and the small quantities available depending on their origin. In this context, this study focuses on the conditions for improving the detection of glycosaminoglycans on a miniaturized scale by mass spectrometry. These multicharged anionic linear polysaccharides are in fact difficult to study by mass spectrometry and can present, for a given molecule, a large number of signals linked to different charge states, to the loss of one or more sulfate groups and to the presence of different adducts, which reduces sensitivity and complicates the interpretation of the spectra. In order to reduce this complexity, we have investigated different sample preparation methods applicable to small sample volumes. The development of home-made capillary ion-exchange columns, for example, makes it possible to control the adducts formed in nano-ESI coupling. However, their use on a miniaturized scale for detection by MALDI-TOF-MS does not allow for performances as high as those obtained with treatment with a commercial DOWEXTM resin. However, experimental results allowed us to demonstrate that the presence of DOWEXTM resin colloid residues in the aqueous phase greatly improves the quality of the spectra obtained by MALDI-TOFMS on a Fondaparinux model glycosaminoglycan. [ABSTRACT FROM AUTHOR]

Following the rapid developments in genomics and proteomics in recent decades, the analysis of the associated sugars became a critical center of interest, particularly in the field of analytical chemistry. Indeed, their synthetic route, diversity and complexity make these carbohydrates, and in particular glycosaminoglycans (GAG), a real analytical puzzle. These polymers are involved in a wide range of biological processes through their particular interaction with proteins. This article aims to show the contribution of separation sciences to the identification and characterization of interaction sites on GAGs. After a brief review of the structure and diversity of GAGs, the question was: do GAGs have a specific interaction motif with proteins? A literature review showed that this question is still controversial and that the reality is more nuanced. This review presents the different separative strategies used to try to identify such a specific GAG binding site if there is one. [ABSTRACT FROM AUTHOR]

Miniaturized weak affinity chromatography is emerging as an interesting alternative to conventional biophysical tools for performing fragment-screening studies in the context of fragment-based drug discovery. In order to push back the analytical limits, it is necessary not only to control non-specific interactions with chromatographic support, but also to adapt this methodology by comparing the results obtained on an affinity column to a control column. The work presented in this study focused on fragment screening that targets a model membrane protein, the adenosine A2A receptor, embedded in nanodiscs (NDs) as biomimetic membranes. By studying the retention behavior of test fragment mixtures on supports modified with different types of NDs, we were able to determine the contribution of ND-related non-specific interactions, in particular the electrostatic effect of anionic phospholipids and the hydrophobic effect of neutral phospholipids. Different strategies for the preparation of control columns (empty NDs, orthosteric site blocking) were investigated and are presented for the first time. With these two types of control columns, the screening enabled the identification of two new fragments of AA2AR, which were confirmed by competition experiments and whose Kd values, estimated directly during the screening or after the competition experiments in frontal mode, were in good agreement. [ABSTRACT FROM AUTHOR]