89 results on '"Dimech, W"'
Search Results
2. A-361 Implementation of a Fit-for-purpose Point of Care Quality Assurance Program
- Author
-
Dimech, W J, primary, Cabuang, L, additional, and Vincini, G, additional
- Published
- 2023
- Full Text
- View/download PDF
3. Renal impairment associated with tenofovir disoproxil fumarate for antiretroviral therapy and HIV pre-exposure prophylaxis: An observational cohort study
- Author
-
Heron, JE, McManus, H, Vickers, T, Ryan, K, Wright, E, Carter, A, Stoove, Mark, Asselin, J, Grulich, A, Donovan, B, Guy, R, Varma, R, Chen, M, Ryder, N, Lewis, DA, Templeton, DJ, O’Connor, CC, Gracey, DM, Bastian, L, Bateson, D, Bowden, S, Boyd, M, Callander, D, Aung, HL, Cogle, A, Costello, J, Dimech, W, Dittmer, J, El-Hayek, C, Ellard, Jeannette, Fairley, C, Franklin, L, Hellard, M, Hocking, J, Kim, J, McGill, S, Nolan, D, Patel, P, Pendle, S, Polkinghorne, V, Nguyen, L, Nguyen, T, O’Connor, C, Reed, P, Roth, N, Selvey, C, Traeger, M, Walker, M, and West, M
- Subjects
Uncategorized - Abstract
Background: Tenofovir disoproxil fumarate (TDF) is associated with adverse renal outcomes when prescribed for HIV infection. There are few data concerning real-world renal outcomes amongst patients prescribed TDF for pre-exposure prophylaxis (PrEP). Methods and findings: Data were extracted from 52 sexual health clinics across Australia from 2009–2019. All patients prescribed TDF-containing antiretroviral therapy and PrEP were included. Rates of renal impairment (a fall in eGFR to
- Published
- 2023
- Full Text
- View/download PDF
4. Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019 (vol 150, E7, 2022)
- Author
-
Lee Wilkinson, A, Pedrana, A, Traeger, MW, Asselin, J, El-Hayek, C, Nguyen, L, Polkinghorne, V, Doyle, JS, Thompson, AJ, Howell, J, Scott, N, Dimech, W, Guy, R, Hellard, M, Stoove, M, Lee Wilkinson, A, Pedrana, A, Traeger, MW, Asselin, J, El-Hayek, C, Nguyen, L, Polkinghorne, V, Doyle, JS, Thompson, AJ, Howell, J, Scott, N, Dimech, W, Guy, R, Hellard, M, and Stoove, M
- Published
- 2022
5. A Proposed Approach to Estimating Uncertainty of Measurement in Serological Assays
- Author
-
Dimech, W, Francis, B, Roberts, G, Chappel, R, and Kox, J
- Published
- 2005
6. An international quality control programme for PRISM chemiluminescent immunoassays in blood service and blood product laboratories
- Author
-
Walker, S., Dimech, W., Kiely, P., Smeh, K., Francis, B., Karakaltsas, M., and Dax, E. M.
- Published
- 2009
- Full Text
- View/download PDF
7. QUALITY CONTROL PROGRAMME FOR NUCLEIC ACID SCREENING IN BLOOD SERVICE LABORATORIES: P-122
- Author
-
Jardine, K., Dent, B. R.J., Pham, T., Dimech, W., and Dax, E. M.
- Published
- 2006
8. Improving the coverage and accuracy of syphilis testing: The development of a novel rapid, point-of-care test for confirmatory testing of active syphilis infection and its early evaluation in China and South Africa
- Author
-
Pham, MD, Wise, A, Garcia, ML, Huy, V, Zheng, S, Mohamed, Y, Han, Y, Wei, W-H, Yin, Y-P, Chen, X-S, Dimech, W, Braniff, S, Technau, K-G, Luchters, S, Anderson, DA, Pham, MD, Wise, A, Garcia, ML, Huy, V, Zheng, S, Mohamed, Y, Han, Y, Wei, W-H, Yin, Y-P, Chen, X-S, Dimech, W, Braniff, S, Technau, K-G, Luchters, S, and Anderson, DA
- Abstract
BACKGROUND: Current point-of-care tests (POCT) for syphilis, based on the detection of Treponema pallidum (TP) total antibodies, have limited capacity in distinguishing between active and past/treated syphilis. We report the development and early evaluation of a new prototype POCT based on the detection of TP-IgA antibodies, a novel biomarker for active syphilis. METHODS: The TP-IgA POCT (index test) was developed in response to the World Health Organisation (WHO) target product profile (TPP) for a POCT for confirmatory syphilis testing. Two sub-studies were conducted consecutively using 458 pre-characterised stored plasma samples in China (sub-study one, addressing the criteria for the WHO TPP), and 503 venous blood samples collected from pregnant/postpartum women in South Africa (sub-study two, addressing potential clinical utility). Performance of the index test was assessed against standard laboratory-based serology using a combination of treponemal (TPHA) and non-treponemal (rapid plasma reagin [RPR]) tests. FINDINGS: In sub-study one, the index test demonstrated 96·1% (95%CI=91·7%-98·5%) sensitivity and 84·7% (95%CI=80·15-88·6%) specificity for identification of active syphilis (TPHA positive, RPR positive). It correctly identified 71% (107/150) samples of past-treated syphilis (TPHA positive, RPR negative). In sub-study two, the index test achieved 100% (95%CI=59%-100%) sensitivity for active syphilis and correctly identified all nine women with past syphilis. INTERPRETATION: The TP-IgA POCT has met the WHO TPP for a POCT for diagnosis of active syphilis and demonstrated its potential utility in a clinical setting. Future studies are warranted to evaluate field performance of the final manufactured test. FUNDING: Saving Lives at Birth: Grand Challenge for Development, Thrasher Research Fund, and the Victorian Government Operational Infrastructure Scheme.
- Published
- 2020
9. An Evaluation Of The In Vitro Activity Of Piperacillin/Tazobactam
- Author
-
Daley, D., Mulgrave, L., Munro, R., Neville, S., Smith, H., and Dimech, W.
- Published
- 1996
- Full Text
- View/download PDF
10. Pathology laboratory surveillance in the Australian collaboration for coordinated enhanced sentinel surveillance of sexually transmitted infections and blood-borne viruses: Protocol for a cohort study
- Author
-
Van Gemert, C, Guy, R, Stoove, M, Dimech, W, El-Hayek, C, Asselin, J, Moreira, C, Nguyen, L, Callander, D, Boyle, D, Donovan, B, Hellard, M, Van Gemert, C, Guy, R, Stoove, M, Dimech, W, El-Hayek, C, Asselin, J, Moreira, C, Nguyen, L, Callander, D, Boyle, D, Donovan, B, and Hellard, M
- Abstract
Background: Passive surveillance is the principal method of sexually transmitted infection (STI) and blood-borne virus (BBV) surveillance in Australia whereby positive cases of select STIs and BBVs are notified to the state and territory health departments. A major limitation of passive surveillance is that it only collects information on positive cases and notifications are heavily dependent on testing patterns. Denominator testing data are important in the interpretation of notifications. Objective: The aim of this study is to establish a national pathology laboratory surveillance system, part of a larger national sentinel surveillance system called ACCESS (the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance). ACCESS is designed to utilize denominator testing data to understand trends in case reporting and monitor the uptake and outcomes of testing for STIs and BBVs. Methods: ACCESS involves a range of clinical sites and pathology laboratories, each with a separate method of recruitment, data extraction, and data processing. This paper includes pathology laboratory sites only. First established in 2007 for chlamydia only, ACCESS expanded in 2012 to capture all diagnostic and clinical monitoring tests for STIs and BBVs, initially from pathology laboratories in New South Wales and Victoria, Australia, to at least one public and one private pathology laboratory in all Australian states and territories in 2016. The pathology laboratory sentinel surveillance system incorporates a longitudinal cohort design whereby all diagnostic and clinical monitoring tests for STIs and BBVs are collated from participating pathology laboratories in a line-listed format. An anonymous, unique identifier will be created to link patient data within and between participating pathology laboratory databases and to clinical services databases. Using electronically extracted, line-listed data, several indicators for each STI and BBV can be calculated, including the numb
- Published
- 2019
11. Tracking the uptake of outcomes of hepatitis B virus testing using laboratory data in Victoria, 2011-16: A population-level cohort study
- Author
-
Van Gemert, C, Dimech, W, Stoove, M, Guy, R, Howell, J, Bowden, S, Nicholson, S, Pendle, S, Donovan, B, Hellard, M, El-Hayek, C, Callandar, D, Asselin, J, Moreira, C, Smith, LW, Nguyen, L, Thomas, G, Van Gemert, C, Dimech, W, Stoove, M, Guy, R, Howell, J, Bowden, S, Nicholson, S, Pendle, S, Donovan, B, Hellard, M, El-Hayek, C, Callandar, D, Asselin, J, Moreira, C, Smith, LW, Nguyen, L, and Thomas, G
- Abstract
Background: A priority area in the 2016 Victorian Hepatitis B Strategy is to increase diagnostic testing. This study describes hepatitis B testing and positivity trends in Victoria between 2011 and 2016 using data from a national laboratory sentinel surveillance system. Methods: Line-listed diagnostic and monitoring hepatitis B testing data among Victorian individuals were collated from six laboratories participating in the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance (ACCESS) of sexually transmissible infections and blood-borne viruses. Diagnostic tests included hepatitis B surface antigen (HBsAg)-only tests and guideline-based hepatitis B tests (defined as a single test event for HBsAg, hepatitis B surface antibody and hepatitis B core antibody). Using available data, the outcomes of testing and/or infection were further classified. Measures reported include the total number of HBsAg and guideline-based tests conducted and the proportion positive, classified as either HBsAg positive or chronic hepatitis B infection. Results: The number of HBsAg tests decreased slightly each year between 2011 and 2016 (from 91 043 in 2011 to 79 664 in 2016; P < 0.001), whereas the number of guideline-based hepatitis B tests increased (from 8732 in 2011 to 16 085 in 2016; P <0.001). The proportion of individuals classified as having chronic infection decreased from 25% in 2011 to 7% in 2016, whereas the proportion classified as susceptible and immune due to vaccination increased (from 29% to 39%, and from 27% to 34%, respectively; P < 0.001). Conclusions: The study findings indicate an increased uptake of guideline-based hepatitis B testing. The ongoing collection of testing data can help monitor progress towards implementation of the Victorian Hepatitis B Strategy.
- Published
- 2019
12. Monitoring the Control of Sexually Transmissible Infections and Blood-Borne Viruses: Protocol for the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance (ACCESS)
- Author
-
Callander, D, Moreira, C, El-Hayek, C, Asselin, J, van Gemert, C, Smith, LW, Long, N, Dimech, W, Boyle, DIR, Donovan, B, Stoove, M, Hellard, M, Guy, R, Callander, D, Moreira, C, El-Hayek, C, Asselin, J, van Gemert, C, Smith, LW, Long, N, Dimech, W, Boyle, DIR, Donovan, B, Stoove, M, Hellard, M, and Guy, R
- Published
- 2018
13. The new screening program to prevent cervical cancer using HPV DNA: getting the balance right in maintaining quality
- Author
-
Garland, SM, Dimech, W, Collignon, P, Cooley, L, Nimmo, GR, Smith, DW, Baird, R, Rawlinson, W, Costa, AM, Higgins, G, Garland, SM, Dimech, W, Collignon, P, Cooley, L, Nimmo, GR, Smith, DW, Baird, R, Rawlinson, W, Costa, AM, and Higgins, G
- Abstract
Along with the reduction in human papillomavirus (HPV) infection and cervical abnormalities as a result of the successful HPV vaccination program, Australia is adopting a new screening strategy. This involves a new paradigm moving from cervical cytological screening to molecular nucleic acid technology (NAT), using HPV DNA assays as primary screening methodology for cervical cancer prevention. These assays must strike a balance between sufficient clinical sensitivity to detect or predict high-grade cervical intraepithelial lesions, the precursor to cervical cancer, without being too sensitive and detecting transient infection not destined for disease. Ensuring the highest quality HPV NAT is thus a priority in order to reduce the possibility of falsely negative screens and manage the risk associated with false positive HPV NAT test results. How to do this needs informed discussion and on-going refinement of the screening algorithm. This is of relevance as more countries move to more sensitive HPV NAT tests for secondary prevention of cervical cancer and as more HPV assays become available.
- Published
- 2018
14. P53 Hepatitis C diagnostic testing trends in Victoria, 2010–2015
- Author
-
Rawson, S.L., primary, El-Hayek, C., additional, Asselin, J., additional, Howell, J., additional, Stoové, M., additional, Dimech, W., additional, Guy, R., additional, Donovan, B., additional, Doyle, J.S., additional, and Hellard, M., additional
- Published
- 2017
- Full Text
- View/download PDF
15. Increased testing for Neisseria gonorrhoeae with duplex nucleic acid amplification tests in Australia: Implications for surveillance
- Author
-
Donovan, B, Dimech, W, Ali, H, Guy, R, Hellard, M, Donovan, B, Dimech, W, Ali, H, Guy, R, and Hellard, M
- Abstract
Background Gonorrhoea notifications have been increasing in Australia's cities, in both men and women. We investigated if this could be, at least in part, a result of a testing artefact. Methods: We surveyed 28 laboratories that were known to test for both Neisseria gonorrhoeae (NG) and Chlamydia trachomatis (CT) to determine their testing and reporting practices, and when these practices were instituted. Results: By 2012, 23 (82%) of the laboratories were routinely performing duplex nucleic acid amplification tests for both CT and NG even if a test for only one organism was requested, up from 9 (32%) laboratories before 2007. Although written reports of negative NG tests were not provided if the test was not requested, positive NG tests were always communicated to the attending clinician. Conclusions: The move towards routine duplex testing for CT and NG has probably resulted in more Australians being tested for NG than ever before. While this change has advantages for case-finding and improved public health outcomes, it also brings an increasing potential for false-positive NG tests. Recent trends in NG notifications should be interpreted with caution.
- Published
- 2015
16. Analysis of laboratory testing results collected in an enhanced chlamydia surveillance system in Australia, 2008-2010
- Author
-
Dimech, W, Lim, MSC, Van Gemert, C, Guy, R, Boyle, D, Donovan, B, Hellard, M, Dimech, W, Lim, MSC, Van Gemert, C, Guy, R, Boyle, D, Donovan, B, and Hellard, M
- Abstract
Background: Chlamydial infection is the most common notifiable disease in Australia, Europe and the US. Australian notifications of chlamydia rose four-fold from 20,274 cases in 2002 to 80,846 cases in 2011; the majority of cases were among young people aged less than 29 years. Along with test positivity rates, an understanding of the number of tests performed and the demographics of individuals being tested are key epidemiological indicators. The ACCESS Laboratory Network was established in 2008 to address this issue.Methods: The ACCESS Laboratory Network collected chlamydia testing data from 15 laboratories around Australia over a three-year period using data extraction software. All chlamydia testing data from participating laboratories were extracted from the laboratory information system; patient identifiers converted to a unique, non-reversible code and de-identified data sent to a single database. Analysis of data by anatomical site included all specimens, but in age and sex specific analysis, only one testing episode was counted.Results: From 2008 to 2010 a total of 628,295 chlamydia tests were referred to the 15 laboratories. Of the 592,626 individual episodes presenting for testing, 70% were from female and 30% from male patients. In female patients, chlamydia positivity rate was 6.4% overall; the highest rate in 14 year olds (14.3%). In male patients, the chlamydia positivity rate was 9.4% overall; the highest in 19 year olds (16.5%). The most common sample type was urine (57%). In 3.2% of testing episodes, multiple anatomical sites were sampled. Urethral swabs gave the highest positivity rate for all anatomical sites in both female (7.7%) and male patients (14%), followed by urine (7.6% and 9.4%, respectively) and eye (6.3% and 7.9%, respectively).Conclusions: The ACCESS Laboratory Network data are unique in both number and scope and are representative of chlamydia testing in both general practice and high-risk clinics. The findings from these data highl
- Published
- 2014
17. Evaluation of eight anti-rubella virus immunoglobulin G immunoassays that report results in international units per milliliter.
- Author
-
Panayotou T., Marler J., Dickeson D., Wilson K., Dax E.M., Wootten R., Dimech W., Panagiotopoulos L., Francis B., Laven N., Panayotou T., Marler J., Dickeson D., Wilson K., Dax E.M., Wootten R., Dimech W., Panagiotopoulos L., Francis B., and Laven N.
- Abstract
An evaluation of anti-rubella virus immunoglobulin G (IgG) immunoassays that report in international units per milliliter (IU/ml) was performed to determine their analytical performance and the degree of correlation of the test results. A total of 321 samples were characterized based on results from a hemagglutination inhibition assay. The 48 negative and 273 positive samples were used to determine the sensitivity and specificity of the assays. When equivocal results were interpreted as reactive, the sensitivity of the immunoassays ranged from 98.9 to 99.9% and the specificity ranged from 77.1 to 95.8%. All assays had positive and negative delta values of less than 2. A significant difference between the mean results of all assays was demonstrated by analysis of variance. However, post hoc analysis showed there was good correlation in the mean results expressed in IU/ml between some of the assays. Our results show the level of standardization between anti-rubella virus IgG immunoassays reporting results expressed as IU/ml has improved since a previous study in 1992, but further improvement is required. Copyright © 2008, American Society for Microbiology. All Rights Reserved.
- Published
- 2012
18. A NEW NATIONAL CHLAMYDIA SENTINEL SURVEILLANCE SYSTEM IN AUSTRALIA: EVALUATION OF THE FIRST STAGE OF IMPLEMENTATION
- Author
-
Guy, RJ, Kong, F, Goller, J, Franklin, N, Bergeri, I, Dimech, W, Reilly, N, Sullivan, E, Ward, J, Kaldor, JM, Hellard, M, Donovan, B, Guy, RJ, Kong, F, Goller, J, Franklin, N, Bergeri, I, Dimech, W, Reilly, N, Sullivan, E, Ward, J, Kaldor, JM, Hellard, M, and Donovan, B
- Abstract
The Australian Collaboration for Chlamydia Enhanced Sentinel Surveillance (ACCESS) was established with funding from the Department of Health and Ageing to trial the monitoring of the uptake and outcome of chlamydia testing in Australia. ACCESS involved 6 separate networks; 5 clinical networks involving sexual health services, family planning clinics, general practices, antenatal clinics, Aboriginal community controlled health services, and 1 laboratory network. The program ran from May 2007 to September 2010. An evaluation of ACCESS was undertaken in early 2010, 2 years after the program was funded. At the time of the evaluation, 76 of the 91 participating sites were contributing data. The jurisdictional distribution of the 76 sites generally matched the jurisdictional distribution of the Australian population. In 2008, the chlamydia testing rates in persons aged 16-29 years attending the 26 general practices was 4.2% in males and 7.0% in females. At the 25 sexual health services, the chlamydia testing rates in heterosexuals aged less than 25 years in 2008 was 77% in males and 74% in females. Between 2004 and 2008, the chlamydia positivity rate increased significantly in heterosexual females aged less than 25 years attending the sexual health services, from 11.5% to 14.1% (P < 0.01). Data completeness was above 85% for all core variables except Aboriginal and/or Torres Strait Islander status and country of birth, which ranged from 68%-100%, and 74%-100%, respectively, per network. There were delays in establishment of the system due to recruitment of 91 sites, multiple ethics applications and establishment of automated extraction programs in 10 different database systems, to transform clinic records into a common, pre-defined surveillance format. ACCESS has considerable potential as a mechanism toward supporting a better understanding of long-term trends in chlamydia notifications and to support policy and program delivery.
- Published
- 2010
19. P3.017 Chlamydia Trachomatis Repeat Testing in Australia
- Author
-
Lim, M, primary, Dimech, W, additional, Gemert, C Van, additional, Boyle, D, additional, McCarthy, D, additional, Weaver, E, additional, Donovan, B, additional, and Hellard, M, additional
- Published
- 2013
- Full Text
- View/download PDF
20. Identification of Performance Problems in a Commercial Human Immunodeficiency Virus Type 1 Enzyme Immunoassay by Multiuser External Quality Control Monitoring and Real-Time Data Analysis
- Author
-
Kim, J., primary, Swantee, C., additional, Lee, B., additional, Gunning, H., additional, Chow, A., additional, Sidaway, F., additional, Sherlock, C., additional, Garceau, R., additional, Dimech, W., additional, and Malloch, L., additional
- Published
- 2009
- Full Text
- View/download PDF
21. P222 The use of external reference controls for anti-Rubella IgG and anti-HBs IgG to improve quality assurance
- Author
-
Lau, A., primary, Hatchette, T., additional, Dimech, W., additional, Kruk, T., additional, Chow, A., additional, Gunning, H., additional, Sidaway, F., additional, Dow, T., additional, Dawood, M., additional, Dowling, A., additional, Stead, F., additional, Roy, M., additional, Quinn, K., additional, and Tipples, G., additional
- Published
- 2009
- Full Text
- View/download PDF
22. Calculating Uncertainty of Measurement for Serology Assays by Use of Precision and Bias
- Author
-
Dimech, W., primary
- Published
- 2006
- Full Text
- View/download PDF
23. Automation of an absorbed enzyme immunoassay for the detection of Mycobacterium paratuberculosis antibodies for an eradication program
- Author
-
Dimech, W, primary
- Published
- 2000
- Full Text
- View/download PDF
24. Typing of strains from a single-source outbreak of Pseudomonas pickettii
- Author
-
Dimech, W J, primary, Hellyar, A G, additional, Kotiw, M, additional, Marcon, D, additional, Ellis, S, additional, and Carson, M, additional
- Published
- 1993
- Full Text
- View/download PDF
25. Multicenter evaluation of five commercial rubella virus immunoglobulin G kits which report in international units per milliliter
- Author
-
Dimech, W, primary, Bettoli, A, additional, Eckert, D, additional, Francis, B, additional, Hamblin, J, additional, Kerr, T, additional, Ryan, C, additional, and Skurrie, I, additional
- Published
- 1992
- Full Text
- View/download PDF
26. An evaluation of the in vitroactivity of piperacillin/tazobactam
- Author
-
Daley, D., Mulgrave, L., Munro, R., Neville, S., Smith, H., and Dimech, W.
- Abstract
Tazobactam is a new, irreversible inhibitor of bacterial beta-lactamases of staphylococci, piasmid-mediated beta-lactamases of the TEM and SHV types found in Escherichia coiland Klebsieltaspecies and beta-lactamases of anerobes such as Bacteroidesspecies. Its combination with piperacillin, a broad spectrum ureido-penicillin, would be expected to improve the activity of piperacillin against staphylococci, TEM and SHV beta-lactamase producing Gram negative bacteria and anerobes. Minimal inhibitory concentrations (MIC) of piperacillin/ tazobactam were determined for 1952 individual patient isolates of Gram positive and negative bacteria causing significant infections and compared with MIC values for cefotaxime, ceftazidime, ciprofloxacin, imipenem, ticarcillin/clavulanic acid. MlCs were determined by agar dilution (NCCLS 1990 and 1992). Piperacillin/tazobactam had excellent activity against methicillin susceptible staphylococci, Streptococcus pneumoniae, Haemophilus influenzaeenterococci and organisms of the Bacteroides fragilisgroup. It was also active against the majority of Enterobacteriaceae and Pseudomonas aeruginosaisolates tested. It was not active against extended spectrum beta-lactamase (ESBL) producing Klebsiellaspecies and some high level TEM and SHV beta-lactamase producing E. coiland Klebsiellaspecies. Activity against Gram negative organisms capable of producing chromosomally mediated beta-lactamases was good, since in most organisms tested, the enzymes were not induced in sufficient quantities to cause antibiotic resistance. However some Enterobacterspecies were derepressed hyper-producing mutants; these isolates showed resistance to piperacillin/tazobactam since tazobactam does not inhibit these Class I beta tactamases. Activity was superior to ticarcillin/ clavulanic acid for Gram negative rods. lmipenem was the most active agent against ESBL producing Klebsiellaspecies. Piperacillin/tazobactam has a suitable spectrum of activity in vitroto suggest its use in monotherapy of mixed anerobic infections, mixed respiratory infections such as aspiration pneumonia and, in combination with an aminoglycoside, it would provide Gram positive as well as Gram negative cover of febrile episodes in immunosuppressed patients.
- Published
- 1996
- Full Text
- View/download PDF
27. Pathology Laboratory Surveillance in the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance of Sexually Transmitted Infections and Blood-Borne Viruses: Protocol for a Cohort Study (Preprint)
- Author
-
van Gemert, C, Guy, R, Stoove, M, Dimech, W, El-Hayek, C, Asselin, J, Moreira, C, Nguyen, L, Callander, D, Boyle, D, Donovan, B, Hellard, M, van Gemert, C, Guy, R, Stoove, M, Dimech, W, El-Hayek, C, Asselin, J, Moreira, C, Nguyen, L, Callander, D, Boyle, D, Donovan, B, and Hellard, M
- Abstract
BACKGROUND Passive surveillance is the principal method of sexually transmitted infection (STI) and blood-borne virus (BBV) surveillance in Australia whereby positive cases of select STIs and BBVs are notified to the state and territory health departments. A major limitation of passive surveillance is that it only collects information on positive cases and notifications are heavily dependent on testing patterns. Denominator testing data are important in the interpretation of notifications. ec>OBJECTIVE The aim of this study is to establish a national pathology laboratory surveillance system, part of a larger national sentinel surveillance system called ACCESS (the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance). ACCESS is designed to utilize denominator testing data to understand trends in case reporting and monitor the uptake and outcomes of testing for STIs and BBVs. ec>METHODS ACCESS involves a range of clinical sites and pathology laboratories, each with a separate method of recruitment, data extraction, and data processing. This paper includes pathology laboratory sites only. First established in 2007 for chlamydia only, ACCESS expanded in 2012 to capture all diagnostic and clinical monitoring tests for STIs and BBVs, initially from pathology laboratories in New South Wales and Victoria, Australia, to at least one public and one private pathology laboratory in all Australian states and territories in 2016. The pathology laboratory sentinel surveillance system incorporates a longitudinal cohort design whereby all diagnostic and clinical monitoring tests for STIs and BBVs are collated from participating pathology laboratories in a line-listed format. An anonymous, unique identifier will be created to link patient data within and between participating pathology laboratory databases and to clinical services databases. Using electronically extracted, line
28. DETECTION OF ANTI-DNA ANTIBODIES: A COMPARISON BETWEEN TWO FARR ASSAYS, CRITHIDIA LUCILIAE AND A HUMAN CHROMOSOMAL SUBSTRATE ASSAY
- Author
-
TIPPING, P. G., primary, BUCHANAN, R. R. C., additional, RIGLAR, A. G., additional, DIMECH, W. J., additional, LITTLEJOHN, G. O., additional, and HOLDSWORTH, S. R., additional
- Published
- 1988
- Full Text
- View/download PDF
29. COMPARISON OF IMMUNOFLUORESCENCE AND IMMUNOPEROXIDASE FOR DEMONSTRATION OF ANTINUCLEAR ANTIBODIES ON HEp-2 SUBSTRATE
- Author
-
TIPPING, P. G., primary, DIMECH, W. J., additional, LITTLEJOHN, G. O., additional, and HOLDSWORTH, S. R., additional
- Published
- 1987
- Full Text
- View/download PDF
30. Rubella Serology: A Renewed Call to Action.
- Author
-
Dimech W
- Abstract
Competing Interests: The author has no relevant financial interest in the products or companies described in this article.
- Published
- 2025
- Full Text
- View/download PDF
31. Point-of-care testing: state-of-the art and perspectives.
- Author
-
Plebani M, Nichols JH, Luppa PB, Greene D, Sciacovelli L, Shaw J, Khan AI, Carraro P, Freckmann G, Dimech W, Zaninotto M, Spannagl M, Huggett J, Kost GJ, Trenti T, Padoan A, Thomas A, Banfi G, and Lippi G
- Subjects
- Humans, Point-of-Care Systems, Point-of-Care Testing
- Abstract
Point-of-care testing (POCT) is becoming an increasingly popular way to perform laboratory tests closer to the patient. This option has several recognized advantages, such as accessibility, portability, speed, convenience, ease of use, ever-growing test panels, lower cumulative healthcare costs when used within appropriate clinical pathways, better patient empowerment and engagement, and reduction of certain pre-analytical errors, especially those related to specimen transportation. On the other hand, POCT also poses some limitations and risks, namely the risk of lower accuracy and reliability compared to traditional laboratory tests, quality control and connectivity issues, high dependence on operators (with varying levels of expertise or training), challenges related to patient data management, higher costs per individual test, regulatory and compliance issues such as the need for appropriate validation prior to clinical use (especially for rapid diagnostic tests; RDTs), as well as additional preanalytical sources of error that may remain undetected in this type of testing, which is usually based on whole blood samples (i.e., presence of interfering substances, clotting, hemolysis, etc.). There is no doubt that POCT is a breakthrough innovation in laboratory medicine, but the discussion on its appropriate use requires further debate and initiatives. This collective opinion paper, composed of abstracts of the lectures presented at the two-day expert meeting "Point-Of-Care-Testing: State of the Art and Perspective" (Venice, April 4-5, 2024), aims to provide a thoughtful overview of the state-of-the-art in POCT, its current applications, advantages and potential limitations, as well as some interesting reflections on the future perspectives of this particular field of laboratory medicine., (© 2024 the author(s), published by De Gruyter, Berlin/Boston.)
- Published
- 2024
- Full Text
- View/download PDF
32. Quality control and external quality assessment for the independent clinic-based evaluation of point-of-care testing to detect Chlamydia trachomatis, Neisseria gonorrhoeae and Trichomonas vaginalis in eight countries.
- Author
-
Shephard M, Matthews S, Andrewartha K, Dimech W, Cabuang L, Barbara C, Chen XS, Cordioli M, Hançali A, Jiang TT, Kularatne R, Meli S, Muller E, Oumzil H, Padovese V, Sandri A, Vargas S, Zahra G, Unemo M, Blondeel K, and Toskin I
- Subjects
- Humans, Neisseria gonorrhoeae genetics, Chlamydia trachomatis genetics, Point-of-Care Testing, Trichomonas vaginalis genetics, Gonorrhea diagnosis, Chlamydia Infections diagnosis, Sexually Transmitted Diseases diagnosis
- Abstract
Background: Sexually transmitted infections caused by Chlamydia trachomatis (CT), Neisseria gonorrhoeae (NG) and Trichomonas vaginalis (TV) remain significant global health problems. The World Health Organization (WHO) has recently conducted a multi-faceted, multi-country validation study (ProSPeRo), which included an evaluation of the Xpert CT/NG and Xpert TV assays on the GeneXpert system (Cepheid, Sunnyvale, Ca., USA) in clinic-based settings across eight countries. To support the study, a training and quality management system was implemented and evaluated., Methods: A comprehensive training program for the study was developed. Quality control (QC) and external quality assessment (EQA) samples were provided by an accredited quality assurance provider. QC testing was conducted at 14 point-of-care testing (POCT) clinics, while EQA samples were tested by the POCT sites and a reference laboratory supporting each clinic., Results: For QC testing, concordance with the expected results for CT and NG was > 99% and rates of unsuccessful tests were < 4%. For TV testing, concordance was similar (97%), but rates of unsuccessful tests were high (18%), particularly in the 'TV negative' sample. For EQA testing initially conducted in 2018, concordance was 100% for CT and NG, and 90% for TV for the reference laboratory group (which used non-GeneXpert systems). Concordance for the POCT group was also high (> 94%) for all analytes, but this cohort (which used GeneXpert systems) exhibited a high rate of unsuccessful TV tests. All but one of these unsuccessful tests was subcategorised as 'invalid'., Conclusions: The high level of concordance for QC and EQA testing confirm that the trained operators at the POC clinical sites were competent to conduct POC testing and that the training and quality systems implemented for the ProSPeRo study were effective. The quality materials used were satisfactory for CT and NG but exhibited poor performance for TV testing on the GeneXpert system. The WHO should continue to work with industry and EQA providers to provide improved materials that are reliable, stable and cost effective for quality management, as it seeks to rollout molecular-based STI POCT in non-laboratory-based settings., Trial Registration: Ethics approval to conduct the ProSPeRo study was granted by the WHO Ethics Review Committee., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
33. Comprehensive, comparative evaluation of 25 automated SARS-CoV-2 serology assays.
- Author
-
Dimech W, Curley S, and Cai JJ
- Subjects
- Humans, COVID-19 Testing, Pandemics, Antibodies, Viral, Sensitivity and Specificity, Immunoglobulin G, SARS-CoV-2, COVID-19 diagnosis
- Abstract
Importance: We have previously highlighted the fact that hundreds of SARS-CoV-2 serology tests were released months after the onset of the COVID-19 pandemic. Of the hundreds of studies investigating the test kits' performance, few were comparative reports, using the same comprehensive sample set across multiple tests. Recently, we reported a comparative assessment of 35 rapid diagnostic tests (RDTs) or microtiter plate enzyme immunoassays (EIA) for use in low- and middle-income countries, using a large sample set from individuals with a history of COVID-19. Only a few tests meet WHO Target Product Profile performance requirements. This study reports on the performance of a further 25 automated SARS-CoV-2 immunoassays using the same panel of samples. The results highlight the better analytical and clinical performance of automated serology test kits compared with RDTs, and the importance of independent comparative assessments to inform the use and procurement of these tests for both diagnostic and epidemiological investigations., Competing Interests: The authors declare no conflict of interest.
- Published
- 2024
- Full Text
- View/download PDF
34. Comprehensive, Comparative Evaluation of 35 Manual SARS-CoV-2 Serological Assays.
- Author
-
Dimech W, Curley S, Subissi L, Ströher U, Perkins MD, and Cunningham J
- Subjects
- Humans, SARS-CoV-2, Clinical Laboratory Techniques methods, COVID-19 Testing, Antibodies, Viral, COVID-19 diagnosis, Middle East Respiratory Syndrome Coronavirus
- Abstract
The onset of the coronavirus disease 2019 (COVID-19) pandemic resulted in hundreds of in vitro diagnostic devices (IVDs) coming to market, facilitated by regulatory authorities allowing "emergency use" without a comprehensive evaluation of performance. The World Health Organization (WHO) released target product profiles (TPPs) specifying acceptable performance characteristics for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) assay devices. We evaluated 26 rapid diagnostic tests and 9 enzyme immunoassays (EIAs) for anti-SARS-CoV-2, suitable for use in low- and middle-income countries (LMICs), against these TPPs and other performance characteristics. The sensitivity and specificity ranged from 60.1 to 100% and 56.0 to 100%, respectively. Five of 35 test kits reported no false reactivity for 55 samples with potentially cross-reacting substances. Six test kits reported no false reactivity for 35 samples containing interfering substances, and only one test reported no false reactivity with samples positive for other coronaviruses (not SARS-CoV-2). This study demonstrates that a comprehensive evaluation of the performance of test kits against defined specifications is essential for the selection of test kits, especially in a pandemic setting. IMPORTANCE The markets have been flooded with hundreds of SARS-CoV-2 serology tests, and although there are many published reports on their performance, comparative reports are far fewer and tend to be limited to only a few tests. In this report, we comparatively assessed 35 rapid diagnostic tests or microtiter plate enzyme immunoassays (EIAs) using a large set of samples from individuals with a history of mild to moderate COVID-19, commensurate with the target population for serosurveillance, which included serum samples from individuals previously infected, at undetermined time periods, with other seasonal human coronaviruses, Middle East respiratory syndrome coronavirus (MERS-CoV), and SARS-CoV-1. The significant heterogeneity in their performances, with only a few tests meeting WHO target product profile performance requirements, highlights the importance of independent comparative assessments to inform the use and procurement of these tests for both diagnostics and epidemiological investigations., Competing Interests: The authors declare no conflict of interest.
- Published
- 2023
- Full Text
- View/download PDF
35. Implementation of Novel Quality Assurance Program for Hepatitis C Viral Load Point of Care Testing.
- Author
-
Dimech W, Cabuang L, Davies K, and Vincini G
- Subjects
- Humans, Point-of-Care Testing, Quality Control, Viral Load, Hepatitis C diagnosis, Point-of-Care Systems
- Abstract
All patients should have access to accurate and timely test results. The introduction of point of care testing (PoCT) for infectious diseases has facilitated access to those unable to access traditional laboratory-based medical testing, including those living in remote and regional locations, or individuals who are marginalized or incarcerated individuals. In many countries, laboratory testing for infectious diseases, such as hepatitis C virus (HCV), is performed in a highly regulated environment. However, this is not the case for PoCT, where testing is performed by non-laboratory staff and quality controls are often lacking. An assessment of the provision of laboratory-based quality assurance to PoCT for infectious disease was conducted and the barriers to participation identified. A novel approach to providing quality assurance to PoCT sites, in particular those testing for HCV, was designed and piloted. This novel approach incudes identifying and validating sample types that are inactivated and stable at ambient temperature, creating cost-effective supply chains to facilitate logistics of samples, and the development of a smart phone-enabled portal for data entry and analyses. The creation and validation of this approach to quality assurance of PoCT removes the barriers to participation and acts to improve the quality and accuracy of testing, reduce errors and waste, and improve patient outcomes.
- Published
- 2022
- Full Text
- View/download PDF
36. Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019 - CORRIGENDUM.
- Author
-
Lee Wilkinson A, Pedrana A, Traeger MW, Asselin J, El-Hayek C, Nguyen L, Polkinghorne V, Doyle JS, Thompson AJ, Howell J, Scott N, Dimech W, Guy R, Hellard M, and Stoové M
- Published
- 2022
- Full Text
- View/download PDF
37. The Standardization and Control of Serology and Nucleic Acid Testing for Infectious Diseases.
- Author
-
Dimech W
- Subjects
- Humans, Nucleic Acid Amplification Techniques, Reference Standards, Serologic Tests, Communicable Diseases diagnosis, Nucleic Acids
- Abstract
Historically, the detection of antibodies against infectious disease agents was achieved using test systems that utilized biological functions such as neutralization, complement fixation, hemagglutination, or visualization of binding of antibodies to specific antigens, by testing doubling dilutions of the patient sample to determine an endpoint. These test systems have since been replaced by automated platforms, many of which have been integrated into general medical pathology. Methods employed to standardize and control clinical chemistry testing have been applied to these serology tests. However, there is evidence that these methods are not suitable for infectious disease serology. An overriding reason is that, unlike testing for an inert chemical, testing for specific antibodies to infectious disease agents is highly variable; the measurand for each test system varies in choice of antigen, antibody classes/subclasses, modes of detection, and assay kinetics, and individuals' immune responses vary with time after exposure, individual immune-competency, nutrition, treatment, and exposure to variable circulating sero- or genotypes or organism mutations. Therefore, unlike that of inert chemicals, the quantification of antibodies cannot be standardized using traditional methods. However, there is evidence that the quantification of nucleic acid testing, reporting results in international units, has been successful across many viral load tests. Similarly, traditional methods used to control clinical chemistry testing, such as Westgard rules, are not appropriate for serology testing for infectious diseases, mainly due to variability due to frequent reagent lot changes. This review investigates the reasons why standardization and control of infectious diseases should be further investigated and more appropriate guidelines should be implemented.
- Published
- 2021
- Full Text
- View/download PDF
38. Real-world monitoring progress towards the elimination of hepatitis C virus in Australia using sentinel surveillance of primary care clinics; an ecological study of hepatitis C virus antibody tests from 2009 to 2019.
- Author
-
Lee Wilkinson A, Pedrana A, Traeger MW, Asselin J, El-Hayek C, Nguyen L, Polkinghorne V, Doyle JS, Thompson AJ, Howell J, Scott N, Dimech W, Guy R, Hellard M, and Stoové M
- Subjects
- Antiviral Agents therapeutic use, Hepacivirus, Humans, Primary Health Care, Sentinel Surveillance, Victoria epidemiology, Hepatitis C diagnosis, Hepatitis C epidemiology, Hepatitis C prevention & control, Substance Abuse, Intravenous epidemiology
- Abstract
To achieve the elimination of the hepatitis C virus (HCV), sustained and sufficient levels of HCV testing is critical. The purpose of this study was to assess trends in testing and evaluate the effectiveness of strategies to diagnose people living with HCV. Data were from 12 primary care clinics in Victoria, Australia, that provide targeted services to people who inject drugs (PWID), alongside general health care. This ecological study spanned 2009-2019 and included analyses of trends in annual numbers of HCV antibody tests among individuals with no previous positive HCV antibody test recorded and annual test yield (positive HCV antibody tests/all HCV antibody tests). Generalised linear models estimated the association between count outcomes (HCV antibody tests and positive HCV antibody tests) and time, and χ2 test assessed the trend in test yield. A total of 44 889 HCV antibody tests were conducted 2009-2019; test numbers increased 6% annually on average [95% confidence interval (CI) 4-9]. Test yield declined from 2009 (21%) to 2019 (9%) (χ2P = <0.01). In more recent years (2013-2019) annual test yield remained relatively stable. Modest increases in HCV antibody testing and stable but high test yield within clinics delivering services to PWID highlights testing strategies are resulting in people are being diagnosed however further increases in the testing of people at risk of HCV or living with HCV may be needed to reach Australia's HCV elimination goals.
- Published
- 2021
- Full Text
- View/download PDF
39. Validation of Dried Tube Sample Format Quality Controls for the Monitoring of Viral Load and Blood Screening Assays.
- Author
-
Dimech W, Vincini G, Davies K, Karakaltsas M, van Cauwalaert ND, Guichet E, Koppelman M, and Cabuang L
- Subjects
- Humans, Sensitivity and Specificity, Specimen Handling methods, Dried Blood Spot Testing methods, HIV Infections virology, HIV-1 isolation & purification, Quality Control, Viral Load methods
- Abstract
HIV viral load (VL) and donor screening assays experience variation and require quaity assurance (QA). NRL sought to confirm a dried tube sample format (HIVDTS) sample type for use in quality control (QC) programs for HIV molecular testing. 50 μL of HIV supernatant at 1 × 10
5 copies per millilitre (copies/mL)) was dried for 48 hours at room temperature. Post-production and shipped integrity studies were undertaken. Dried HIVDTS was reconstituted in PBS buffer and tested in HIV VL (six participants) or blood screening assays (four participants). Results were entered into NRL's QC monitoring software (EDCNet™) for analysis. The mean of 224 VL results when HIVDTS QCs were tested in Biocentric HIV GENERIC Charge Virale assay was 4.54 log10 copies/mL, with the percentage coefficient of variation (CV%) ranging from 1.75 to 13.20%. The mean Ct value for HIVDTS QCs tested on Roche Cobas MPX assay results was 28.71 (range 28.33 to 29.14), with CV% ranging from 1.56 to 3.98%. The study confirms HIVDTS QCs can effectively monitor the performance of HIV molecular testing and offers a cheaper alternative to commercial QC samples that require cold-chain shipping on dry ice and UN3373 conditions., (Copyright © 2020 Elsevier B.V. All rights reserved.)- Published
- 2020
- Full Text
- View/download PDF
40. Improving the coverage and accuracy of syphilis testing: The development of a novel rapid, point-of-care test for confirmatory testing of active syphilis infection and its early evaluation in China and South Africa.
- Author
-
Pham MD, Wise A, Garcia ML, Van H, Zheng S, Mohamed Y, Han Y, Wei WH, Yin YP, Chen XS, Dimech W, Braniff S, Technau KG, Luchters S, and Anderson DA
- Abstract
Background: Current point-of-care tests (POCT) for syphilis, based on the detection of Treponema pallidum (TP) total antibodies, have limited capacity in distinguishing between active and past/treated syphilis. We report the development and early evaluation of a new prototype POCT based on the detection of TP-IgA antibodies, a novel biomarker for active syphilis., Methods: The TP-IgA POCT (index test) was developed in response to the World Health Organisation (WHO) target product profile (TPP) for a POCT for confirmatory syphilis testing. Two sub-studies were conducted consecutively using 458 pre-characterised stored plasma samples in China (sub-study one, addressing the criteria for the WHO TPP), and 503 venous blood samples collected from pregnant/postpartum women in South Africa (sub-study two, addressing potential clinical utility). Performance of the index test was assessed against standard laboratory-based serology using a combination of treponemal (TPHA) and non-treponemal (rapid plasma reagin [RPR]) tests., Findings: In sub-study one, the index test demonstrated 96·1% (95%CI=91·7%-98·5%) sensitivity and 84·7% (95%CI=80·15-88·6%) specificity for identification of active syphilis (TPHA positive, RPR positive). It correctly identified 71% (107/150) samples of past-treated syphilis (TPHA positive, RPR negative). In sub-study two, the index test achieved 100% (95%CI=59%-100%) sensitivity for active syphilis and correctly identified all nine women with past syphilis., Interpretation: The TP-IgA POCT has met the WHO TPP for a POCT for diagnosis of active syphilis and demonstrated its potential utility in a clinical setting. Future studies are warranted to evaluate field performance of the final manufactured test., Funding: Saving Lives at Birth: Grand Challenge for Development, Thrasher Research Fund, and the Victorian Government Operational Infrastructure Scheme., Competing Interests: MLG, HV, DAA and SZ developed the syphilis IgA test at the Burnet Institute in Australia and DAA is also employed at Nanjing BioPoint Diagnostics, a spinoff company of the Burnet Institute, which will manufacture the final syphilis IgA POCT device. MLG, HV, DAA, SZ, MDP, YM and SL report grants from Saving Lives at Birth - A Grand Challenge for Development managed by USAID (award number AID-OAA-F-13-00,011) and from the Thrasher Research Fund via a project grant (award number: 12617). AW and KT report funding from the Burnet Institute, Australia, during the conduct of the study. MDP, YM, SL work at the Burnet Institute but were not involved in the development of the test. All other authors report no conflict., (© 2020 The Authors.)
- Published
- 2020
- Full Text
- View/download PDF
41. WHO international standard for anti-rubella: learning from its application.
- Author
-
Kempster SL, Almond N, Dimech W, Grangeot-Keros L, Huzly D, Icenogle J, El Mubarak HS, Mulders MN, and Nübling CM
- Subjects
- Humans, Immunoglobulin G blood, Reproducibility of Results, Sensitivity and Specificity, World Health Organization, Antibodies, Viral blood, Immunoassay methods, Immunoassay standards, Reference Standards, Rubella immunology
- Abstract
The WHO international standard for anti-rubella was first established in the 1960s when clinical diagnostics were in their infancy. Since the endorsement of the first international standard for anti-rubella IgG (RUBI-1-94), new rubella vaccines have been developed and global coverage of rubella vaccination has increased. Methods used to measure concentrations of anti-rubella IgG have also evolved to rapid, high-throughput binding assays, which have replaced often cumbersome and highly technical functional assays. During this timeframe, the protective concentration of antibody was set at 10 IU/mL by extrapolation of functional assay correlates; however, the subpopulation of antibodies within a polyclonal serum that confer protection remained undefined. Anti-rubella assays have variable formats, including antigens used, such that the same clinical sample tested on different assays can report different values with potentially devastating consequences, such as recommending to terminate pregnancy. WHO convened a meeting of experts in the rubella field to discuss the use of RUBI-1-94 and the potential future role of this international standard. The main conclusions of this meeting questioned the appropriateness of 10 IU/mL as the cutoff for protection and acknowledged the continuing role of RUBI-1-94 as a reference preparation to address analytical sensitivity and assay variation., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
42. Pathology Laboratory Surveillance in the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance of Sexually Transmitted Infections and Blood-Borne Viruses: Protocol for a Cohort Study.
- Author
-
van Gemert C, Guy R, Stoove M, Dimech W, El-Hayek C, Asselin J, Moreira C, Nguyen L, Callander D, Boyle D, Donovan B, and Hellard M
- Abstract
Background: Passive surveillance is the principal method of sexually transmitted infection (STI) and blood-borne virus (BBV) surveillance in Australia whereby positive cases of select STIs and BBVs are notified to the state and territory health departments. A major limitation of passive surveillance is that it only collects information on positive cases and notifications are heavily dependent on testing patterns. Denominator testing data are important in the interpretation of notifications., Objective: The aim of this study is to establish a national pathology laboratory surveillance system, part of a larger national sentinel surveillance system called ACCESS (the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance). ACCESS is designed to utilize denominator testing data to understand trends in case reporting and monitor the uptake and outcomes of testing for STIs and BBVs., Methods: ACCESS involves a range of clinical sites and pathology laboratories, each with a separate method of recruitment, data extraction, and data processing. This paper includes pathology laboratory sites only. First established in 2007 for chlamydia only, ACCESS expanded in 2012 to capture all diagnostic and clinical monitoring tests for STIs and BBVs, initially from pathology laboratories in New South Wales and Victoria, Australia, to at least one public and one private pathology laboratory in all Australian states and territories in 2016. The pathology laboratory sentinel surveillance system incorporates a longitudinal cohort design whereby all diagnostic and clinical monitoring tests for STIs and BBVs are collated from participating pathology laboratories in a line-listed format. An anonymous, unique identifier will be created to link patient data within and between participating pathology laboratory databases and to clinical services databases. Using electronically extracted, line-listed data, several indicators for each STI and BBV can be calculated, including the number of tests, unique number of individuals tested and retested, test yield, positivity, and incidence., Results: To date, over 20 million STI and BBV laboratory test records have been extracted for analysis for surveillance monitoring nationally. Recruitment of laboratories is ongoing to ensure appropriate coverage for each state and territory; reporting of indicators will occur in 2019 with publication to follow., Conclusions: The ACCESS pathology laboratory sentinel surveillance network is a unique surveillance system that collects data on diagnostic testing, management, and care for and of STIs and BBVs. It complements the ACCESS clinical network and enhances Australia's capacity to respond to STIs and BBVs., International Registered Report Identifier (irrid): DERR1-10.2196/13625., (©Caroline van Gemert, Rebecca Guy, Mark Stoove, Wayne Dimech, Carol El-Hayek, Jason Asselin, Clarissa Moreira, Long Nguyen, Denton Callander, Douglas Boyle, Basil Donovan, Margaret Hellard. Originally published in JMIR Research Protocols (http://www.researchprotocols.org), 08.08.2019.)
- Published
- 2019
- Full Text
- View/download PDF
43. Tracking the uptake of outcomes of hepatitis B virus testing using laboratory data in Victoria, 2011-16: a population-level cohort study.
- Author
-
van Gemert C, Dimech W, Stoove M, Guy R, Howell J, Bowden S, Nicholson S, Pendle S, Donovan B, and Hellard M
- Subjects
- Cohort Studies, Communicable Disease Control, Female, Hepatitis B diagnosis, Hepatitis B epidemiology, Hepatitis B immunology, Hepatitis B prevention & control, Hepatitis B Vaccines therapeutic use, Hepatitis B, Chronic epidemiology, Hepatitis B, Chronic immunology, Hepatitis B, Chronic prevention & control, Humans, Male, Practice Guidelines as Topic, Retrospective Studies, Sentinel Surveillance, Victoria epidemiology, Hepatitis B Antibodies immunology, Hepatitis B Core Antigens immunology, Hepatitis B Surface Antigens immunology, Hepatitis B, Chronic diagnosis, Serologic Tests trends
- Abstract
Background A priority area in the 2016 Victorian Hepatitis B Strategy is to increase diagnostic testing. This study describes hepatitis B testing and positivity trends in Victoria between 2011 and 2016 using data from a national laboratory sentinel surveillance system., Methods: Line-listed diagnostic and monitoring hepatitis B testing data among Victorian individuals were collated from six laboratories participating in the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance (ACCESS) of sexually transmissible infections and blood-borne viruses. Diagnostic tests included hepatitis B surface antigen (HBsAg)-only tests and guideline-based hepatitis B tests (defined as a single test event for HBsAg, hepatitis B surface antibody and hepatitis B core antibody). Using available data, the outcomes of testing and/or infection were further classified. Measures reported include the total number of HBsAg and guideline-based tests conducted and the proportion positive, classified as either HBsAg positive or chronic hepatitis B infection., Results: The number of HBsAg tests decreased slightly each year between 2011 and 2016 (from 91043 in 2011 to 79664 in 2016; P < 0.001), whereas the number of guideline-based hepatitis B tests increased (from 8732 in 2011 to 16085 in 2016; P <0.001). The proportion of individuals classified as having chronic infection decreased from 25% in 2011 to 7% in 2016, whereas the proportion classified as susceptible and immune due to vaccination increased (from 29% to 39%, and from 27% to 34%, respectively; P < 0.001)., Conclusions: The study findings indicate an increased uptake of guideline-based hepatitis B testing. The ongoing collection of testing data can help monitor progress towards implementation of the Victorian Hepatitis B Strategy.
- Published
- 2019
- Full Text
- View/download PDF
44. Counterpoint to the Letter to the Editor by Badrick and Parvin in regard to Comparison of four methods of establishing control limits for monitoring quality controls in infectious disease serology testing.
- Author
-
Dimech W, Vincini G, and Karakaltas M
- Subjects
- Humans, Quality Control, Communicable Diseases
- Published
- 2019
- Full Text
- View/download PDF
45. Monitoring the Control of Sexually Transmissible Infections and Blood-Borne Viruses: Protocol for the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance (ACCESS).
- Author
-
Callander D, Moreira C, El-Hayek C, Asselin J, van Gemert C, Watchirs Smith L, Nguyen L, Dimech W, Boyle DI, Donovan B, Stoové M, Hellard M, and Guy R
- Abstract
Background: New biomedical prevention interventions make the control or elimination of some blood-borne viruses (BBVs) and sexually transmissible infections (STIs) increasingly feasible. In response, the World Health Organization and governments around the world have established elimination targets and associated timelines. To monitor progress toward such targets, enhanced systems of data collection are required. This paper describes the Australian Collaboration for Coordinated Enhanced Sentinel Surveillance (ACCESS)., Objective: This study aims to establish a national surveillance network designed to monitor public health outcomes and evaluate the impact of strategies aimed at controlling BBVs and STIs., Methods: ACCESS is a sentinel surveillance system comprising health services (sexual health clinics, general practice clinics, drug and alcohol services, community-led testing services, and hospital outpatient clinics) and pathology laboratories in each of Australia's 8 states and territories. Scoping was undertaken in each jurisdiction to identify sites that provide a significant volume of testing or management of BBVs or STIs or to see populations with particular risks for these infections ("priority populations"). Nationally, we identified 115 health services and 24 pathology laboratories as relevant to BBVs or STIs; purposive sampling was undertaken. As of March 2018, we had recruited 92.0% (104/113) of health services and 71% (17/24) of laboratories among those identified as relevant to ACCESS. ACCESS is based on the regular and automated extraction of deidentified patient data using specialized software called GRHANITE, which creates an anonymous unique identifier from patient details. This identifier allows anonymous linkage between and within participating sites, creating a national cohort to facilitate epidemiological monitoring and the evaluation of clinical and public health interventions., Results: Between 2009 and 2017, 1,171,658 individual patients attended a health service participating in ACCESS network comprising 7,992,241 consultations. Regarding those with unique BBV and STI-related health needs, ACCESS captured data on 366,441 young heterosexuals, 96,985 gay and bisexual men, and 21,598 people living with HIV., Conclusions: ACCESS is a unique system with the ability to track efforts to control STIs and BBVs-including through the calculation of powerful epidemiological indicators-by identifying response gaps and facilitating the evaluation of programs and interventions. By anonymously linking patients between and within services and over time, ACCESS has exciting potential as a research and evaluation platform. Establishing a national health surveillance system requires close partnerships across the research, government, community, health, and technology sectors., International Registered Report Identifier (irrid): DERR1-10.2196/11028., (©Denton Callander, Clarissa Moreira, Carol El-Hayek, Jason Asselin, Caroline van Gemert, Lucy Watchirs Smith, Long Nguyen, Wayne Dimech, Douglas IR Boyle, Basil Donovan, Mark Stoové, Margaret Hellard, Rebecca Guy. Originally published in JMIR Research Protocols (http://www.researchprotocols.org), 20.11.2018.)
- Published
- 2018
- Full Text
- View/download PDF
46. Comparison of four methods of establishing control limits for monitoring quality controls in infectious disease serology testing.
- Author
-
Dimech W, Karakaltsas M, and Vincini GA
- Subjects
- Antibodies, Viral blood, Clinical Chemistry Tests standards, HIV Antibodies blood, Hepatitis B Surface Antigens blood, Hepatitis C Antibodies blood, Humans, Immunoassay methods, Immunoassay standards, Laboratories, Hospital, Reagent Kits, Diagnostic, Clinical Chemistry Tests methods, Communicable Diseases diagnosis, Quality Control
- Abstract
Background: A general trend towards conducting infectious disease serology testing in centralized laboratories means that quality control (QC) principles used for clinical chemistry testing are applied to infectious disease testing. However, no systematic assessment of methods used to establish QC limits has been applied to infectious disease serology testing., Methods: A total of 103 QC data sets, obtained from six different infectious disease serology analytes, were parsed through standard methods for establishing statistical control limits, including guidelines from Public Health England, USA Clinical and Laboratory Standards Institute (CLSI), German Richtlinien der Bundesärztekammer (RiliBÄK) and Australian QConnect. The percentage of QC results failing each method was compared., Results: The percentage of data sets having more than 20% of QC results failing Westgard rules when the first 20 results were used to calculate the mean±2 standard deviation (SD) ranged from 3 (2.9%) for R4S to 66 (64.1%) for 10X rule, whereas the percentage ranged from 0 (0%) for R4S to 32 (40.5%) for 10X when the first 100 results were used to calculate the mean±2 SD. By contrast, the percentage of data sets with >20% failing the RiliBÄK control limits was 25 (24.3%). Only two data sets (1.9%) had more than 20% of results outside the QConnect Limits., Conclusions: The rate of failure of QCs using QConnect Limits was more applicable for monitoring infectious disease serology testing compared with UK Public Health, CLSI and RiliBÄK, as the alternatives to QConnect Limits reported an unacceptably high percentage of failures across the 103 data sets.
- Published
- 2018
- Full Text
- View/download PDF
47. The new screening program to prevent cervical cancer using HPV DNA: getting the balance right in maintaining quality.
- Author
-
Garland SM, Dimech W, Collignon P, Cooley L, Nimmo GR, Smith DW, Baird R, Rawlinson W, Costa AM, and Higgins G
- Subjects
- Australia, Early Detection of Cancer methods, Female, Humans, Uterine Cervical Neoplasms diagnosis, DNA, Viral isolation & purification, Mass Screening methods, Papillomaviridae isolation & purification, Papillomavirus Infections diagnosis, Uterine Cervical Neoplasms prevention & control
- Abstract
Along with the reduction in human papillomavirus (HPV) infection and cervical abnormalities as a result of the successful HPV vaccination program, Australia is adopting a new screening strategy. This involves a new paradigm moving from cervical cytological screening to molecular nucleic acid technology (NAT), using HPV DNA assays as primary screening methodology for cervical cancer prevention. These assays must strike a balance between sufficient clinical sensitivity to detect or predict high-grade cervical intraepithelial lesions, the precursor to cervical cancer, without being too sensitive and detecting transient infection not destined for disease. Ensuring the highest quality HPV NAT is thus a priority in order to reduce the possibility of falsely negative screens and manage the risk associated with false positive HPV NAT test results. How to do this needs informed discussion and on-going refinement of the screening algorithm. This is of relevance as more countries move to more sensitive HPV NAT tests for secondary prevention of cervical cancer and as more HPV assays become available., (© 2018 The Authors. The Journal of Pathology: Clinical Research published by The Pathological Society of Great Britain and Ireland and John Wiley & Sons Ltd.)
- Published
- 2018
- Full Text
- View/download PDF
48. Results of cytomegalovirus DNA viral loads expressed in copies per millilitre and international units per millilitre are equivalent.
- Author
-
Dimech W, Cabuang LM, Grunert HP, Lindig V, James V, Senechal B, Vincini GA, and Zeichhardt H
- Subjects
- DNA, Viral blood, Humans, World Health Organization, Cytomegalovirus, DNA, Viral analysis, Viral Load standards
- Abstract
Quantification of Cytomegalovirus (CMV) DNA is required for the initiation and monitoring of anti-viral treatment and the detection of viral resistance. However, due to the lack of standardisation of CMV DNA nucleic acid tests, it is difficult to set universal thresholds. In 2010, the 1st WHO International Standard for Human Cytomegalovirus for Nucleic Acid Amplification Techniques was released. Since then CMV DNA viral load assays have been calibrated using this standard. Three external quality assessment (EQA) providers sent the same five samples to their participants and analysed the results to determine the equivalence of reporting CMV DNA results in international units per millilitre (IU/mL), and compared the difference in results reported in IU/mL with those reported in copies per millilitre (c/mL), and to determine the rate of adoption of IU/mL. About 78% of participants continue to report results in c/mL even though six of the 12 commercial assays are calibrated against the standard. The range of the results reported in IU/mL was less than those reported in c/mL indicating that the adoption of the WHO standard successfully improved the reporting of the CMV viral load. The variation in individual sample results reported by different assays, irrespective of whether in IU/mL or c/mL, is still great and therefore more standardisation of the assays is needed to allow the setting of treatment and monitoring thresholds. This study can act as a bench mark to determine rate of future adoption if reporting CMV DNA viral load results in IU/mL., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
49. A 16-year review of seroprevalence studies on measles and rubella.
- Author
-
Dimech W and Mulders MN
- Subjects
- Adolescent, Adult, Child, Emigrants and Immigrants, Female, Humans, Immunity, Maternally-Acquired, Immunoenzyme Techniques, Infant, Male, Seroepidemiologic Studies, Vaccination, Young Adult, Measles epidemiology, Rubella epidemiology
- Abstract
The determination of the seroprevalence of vaccine-preventable diseases is critical in monitoring the efficacy of vaccination programmes and to assess the gaps in population immunity but requires extensive organisation and is time and resource intensive. The results of the studies are frequently reported in peer-reviewed scientific, government and non-government publications. A review of scientific literature was undertaken to advise the development of WHO guidelines for the assessment of measles and rubella seroprevalence. A search of the National Library of Medicine's PubMed online publications using key words of 'measles', 'rubella', combined with 'serosurvey', 'seroprevalence', 'immunity' and 'population immunity' was conducted. A total of 97 articles published between January 1998 and June 2014 were retrieved, 68 describing serosurveys for measles and 58 serosurveys for rubella, conducted in 37 and 36 different countries respectively. Only 13 (19%) and 8 (14%) respectively were UN classified "least developed countries". The study sample varied markedly and included combinations of male and female infants, children, adolescents and adults. The study sizes also varied with 28% and 33% of measles and rubella studies respectively, having greater than 2000 participants. Microtitre plate enzyme immunoassays were used in 52 (76%) measles studies and 40 (69%) rubella studies. A total of 39 (57%) measles and 44 (76%) rubella studies reported quantitative test results. Seroprevalence ranged from 60.8% to 95.9% for measles and 53.0% to 99.3% for rubella studies. The review highlighted that infants lost maternally-acquired immunity within 9months of birth and were unprotected until vaccination. Two groups at higher risk of infection were identified: young adults between the ages of 15 and 30years and immigrants., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
50. A review of testing used in seroprevalence studies on measles and rubella.
- Author
-
Dimech W and Mulders MN
- Subjects
- Antibodies, Viral analysis, Dried Blood Spot Testing, Humans, Milk, Human chemistry, Quality Control, Saliva chemistry, Seroepidemiologic Studies, Measles epidemiology, Research Design, Rubella epidemiology, Serologic Tests methods
- Abstract
Seroprevalence studies are an essential tool to monitor the efficacy of vaccination programmes, to understand population immunity and to identify populations at higher risk of infection. An overarching review of all aspects of seroprevalence studies for measles and rubella published between 1998 and June 2014 was undertaken and the findings reported elsewhere. This paper details the considerable variation in the testing formats identified in the review. Apart from serum/plasma samples, testing of oral fluid, breast milk, dry blood spots and capillary whole blood were reported. Numerous different commercial assays were employed, including microtitre plate assays, automated immunoassays and classical haemagglutination inhibition and neutralisation assays. A total of 29 of the 68 (43%) measles and 14 of the 58 (24%) rubella studies reported qualitative test results. Very little information on the testing environment, including quality assurance mechanisms used, was provided. Due to the large numbers of testing systems, the diversity of sample types used and the difficulties in accurate quantification of antibody levels, the results reported in individual studies were not necessarily comparable. Further efforts to standardise seroprevalence studies may overcome this deficiency., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.