487 results on '"Dixon JE"'
Search Results
2. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.
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Yooseph, S, Sutton, G, Rusch, DB, Halpern, AL, Williamson, SJ, Remington, K, Eisen, JA, Heidelberg, KB, Manning, G, Li, W, Jaroszewski, L, Cieplak, P, Miller, CS, Li, H, Mashiyama, ST, Joachimiak, MP, van Belle, C, Chandonia, JM, Soergel, DA, Zhai, Y, Natarajan, K, Lee, S, Raphael, BJ, Bafna, V, Friedman, R, Brenner, SE, Godzik, A, Eisenberg, D, Dixon, JE, Taylor, SS, Strausberg, RL, Frazier, M, and Venter, JC
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Biological Sciences ,Agricultural and Veterinary Sciences ,Medical and Health Sciences ,Developmental Biology - Abstract
Metagenomics projects based on shotgun sequencing of populations of micro-organisms yield insight into protein families. We used sequence similarity clustering to explore proteins with a comprehensive dataset consisting of sequences from available databases together with 6.12 million proteins predicted from an assembly of 7.7 million Global Ocean Sampling (GOS) sequences. The GOS dataset covers nearly all known prokaryotic protein families. A total of 3,995 medium- and large-sized clusters consisting of only GOS sequences are identified, out of which 1,700 have no detectable homology to known families. The GOS-only clusters contain a higher than expected proportion of sequences of viral origin, thus reflecting a poor sampling of viral diversity until now. Protein domain distributions in the GOS dataset and current protein databases show distinct biases. Several protein domains that were previously categorized as kingdom specific are shown to have GOS examples in other kingdoms. About 6,000 sequences (ORFans) from the literature that heretofore lacked similarity to known proteins have matches in the GOS data. The GOS dataset is also used to improve remote homology detection. Overall, besides nearly doubling the number of current proteins, the predicted GOS proteins also add a great deal of diversity to known protein families and shed light on their evolution. These observations are illustrated using several protein families, including phosphatases, proteases, ultraviolet-irradiation DNA damage repair enzymes, glutamine synthetase, and RuBisCO. The diversity added by GOS data has implications for choosing targets for experimental structure characterization as part of structural genomics efforts. Our analysis indicates that new families are being discovered at a rate that is linear or almost linear with the addition of new sequences, implying that we are still far from discovering all protein families in nature.
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- 2007
3. Ca2+-dependent liquid-liquid phase separation underlies intracellular Ca2+ stores
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Joshua E. Mayfield, Dixon Je, Alexandra C. Newton, Worby Ca, Junqian Xu, Tandon, and Pollak Aj
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chemistry.chemical_classification ,medicine.anatomical_structure ,chemistry ,Kinase ,Endoplasmic reticulum ,Binding protein ,medicine ,Biophysics ,Phosphorylation ,Skeletal muscle ,Intracellular ,Secretory pathway ,Divalent - Abstract
Endoplasmic/sarcoplasmic reticulum Ca2+ stores are essential to myriad cellular processes, however, the structure of these stores is largely unknown and existing models neither explain observations made in vivo nor sufficiently account for physiological data. We investigate CASQ1 - the major Ca2+ binding protein of skeletal muscle – and discover Ca2+-dependent liquid-liquid phase separation activity. The intrinsic disorder of CASQ1 underlies this activity and is regulated via phosphorylation by the secretory pathway kinase FAM20C. This novel divalent cation driven condensation demonstrates liquid-liquid phase separation occurs within the endoplasmic/sarcoplasmic reticulum, mechanistically explains efficient Ca2+ buffering and storage, and represents a largely unexplored mechanism of divalent-cation driven protein association.
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- 2021
4. SARS-CoV-2 spike RBD and nucleocapsid encoding DNA vaccine elicits T cell and neutralising antibody responses that cross react with variants
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Brentville, VA, primary, Vankemmelbeke, M, additional, Metheringham, RL, additional, Symonds, P, additional, Cook, KW, additional, Urbanowicz, RA, additional, Tsoleridis, T, additional, Coleman, CM, additional, Chang, K-C, additional, Skinner, A, additional, Dubinina, E, additional, Daniels, I, additional, Shah, S, additional, Argonza, M, additional, Delgado, J, additional, Dwivedi, V, additional, Kulkarni, V, additional, Dixon, JE, additional, Pockley, AG, additional, Adams, SE, additional, Paston, SJ, additional, Daly, JM, additional, Ball, JK, additional, and Durrant, LG, additional
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- 2021
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5. Through thick and thin: how optical cavities control spin
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Dixon Jefferson, Pan Feng, Moradifar Parivash, Bordoloi Priyanuj, Dagli Sahil, and Dionne Jennifer
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chirality ,high-q ,metasurfaces ,photonic crystals ,spin ,Physics ,QC1-999 - Abstract
When light interacts with matter by means of scattering and absorption, we observe the resulting color. Light also probes the symmetry of matter and the result is encoded in its polarization. In the special case of circularly-polarized light, which is especially relevant in nonlinear optics, quantum photonics, and physical chemistry, a critical dimension of symmetry is along the longitudinal direction. We examine recent advances in controlling circularly-polarized light and reveal that the commonality in these advances is in judicious control of longitudinal symmetry. In particular, in the use of high quality-factor modes in dielectric metasurfaces, the finite thickness can be used to tune the modal profile. These symmetry considerations can be applied in multiplexed optical communication schemes, deterministic control of quantum emitters, and sensitive detection of the asymmetry of small molecules.
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- 2023
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6. High-Q nanophotonics: sculpting wavefronts with slow light
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Barton David, Hu Jack, Dixon Jefferson, Klopfer Elissa, Dagli Sahil, Lawrence Mark, and Dionne Jennifer
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high-q ,slow light ,wavefront manipulation ,Physics ,QC1-999 - Abstract
Densely interconnected, nonlinear, and reconfigurable optical networks represent a route to high-performance optical computing, communications, and sensing technologies. Dielectric nanoantennas are promising building blocks for such architectures since they can precisely control optical diffraction. However, they are traditionally limited in their nonlinear and reconfigurable responses owing to their relatively low-quality factor (Q-factor). Here, we highlight new and emerging design strategies to increase the Q-factor while maintaining control of optical diffraction, enabling unprecedented spatial and temporal control of light. We describe how multipolar modes and bound states in the continuum increase Q and show how these high-Q nanoantennas can be cascaded to create almost limitless resonant optical transfer functions. With high-Q nanoantennas, new paradigms in reconfigurable wavefront-shaping, low-noise, multiplexed biosensors and quantum transduction are possible.
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- 2020
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7. Widespread dynamic DNA methylation in response to biotic stress
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Dowen, R, Pelizzola, M, Schmitz, R, Lister, R, Dowen, J, Nery, J, Dixon, J, Ecker, J, Dowen, RH, Schmitz, RJ, Dowen, JM, Nery, JR, Dixon, JE, Ecker, JR, Dowen, R, Pelizzola, M, Schmitz, R, Lister, R, Dowen, J, Nery, J, Dixon, J, Ecker, J, Dowen, RH, Schmitz, RJ, Dowen, JM, Nery, JR, Dixon, JE, and Ecker, JR
- Abstract
Regulation of gene expression by DNA methylation is crucial for defining cellular identities and coordinating organism-wide developmental programs in many organisms. In plants, modulation of DNA methylation in response to environmental conditions represents a potentially robust mechanism to regulate gene expression networks; however, examples of dynamic DNA methylation are largely limited to gene imprinting. Here we report an unexpected role for DNA methylation in regulation of the Arabidopsis thaliana immune system. Profiling the DNA methylomes of plants exposed to bacterial pathogen, avirulent bacteria, or salicylic acid (SA) hormone revealed numerous stress-induced differentially methylated regions, many of which were intimately associated with differentially expressed genes. In response to SA, transposon-associated differentially methylated regions, which were accompanied by upregulation of 21-nt siRNAs, were often coupled to transcriptional changes of the transposon and/or the proximal gene. Thus, dynamic DNA methylation changes within repetitive sequences or transposons can regulate neighboring genes in response to SA stress.
- Published
- 2012
8. A Mutation in Adenylosuccinate Lyase Associated With Mental-retardation and Autistic Features
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UCL - MD/BICL - Département de biochimie et de biologie cellulaire, Stone, RL., Aimi, J., Barshop, BA., Jaeken, J., Van den Berghe, Georges, Zalkin, H., Dixon, JE., UCL - MD/BICL - Département de biochimie et de biologie cellulaire, Stone, RL., Aimi, J., Barshop, BA., Jaeken, J., Van den Berghe, Georges, Zalkin, H., and Dixon, JE.
- Abstract
We have examined the molecular basis of three cases of severe mental retardation with autistic features in one family. A point mutation in a purine nucleotide biosynthetic enzyme, adenylosuccinate lyase (ASL), segregates with the disorder. The affected children are homozygous for the point mutation while the parents and all four unaffected children are heterozygous. The point mutation is absent in control subjects. The point mutation results in a Ser413Pro substitution which leads to structural instability of the recombinant mutant enzyme, and this instability lowers ASL levels in lymphocytes. These observations suggest that the instability of ASL underlies the severe developmental disorder in the affected children, and that mutations in the ASL gene may result in other cases of mental retardation and autistic features.
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- 1992
9. Insights derived from the structures of the Ser/Thr phosphatases calcineurin and protein phosphatase 1
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Lohse, DL, primary, Denu, JM, additional, and Dixon, JE, additional
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- 1995
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10. Expression of a protein tyrosine phosphatase in normal and v-src-transformed mouse 3T3 fibroblasts
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Woodford-Thomas, TA, primary, Rhodes, JD, additional, and Dixon, JE, additional
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- 1992
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11. Ultra-high-field imaging distinguishes MS lesions from asymptomatic white matter lesions.
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Tallantyre EC, Dixon JE, Donaldson I, Owens T, Morgan PS, Morris PG, Evangelou N, Tallantyre, E C, Dixon, J E, Donaldson, I, Owens, T, Morgan, P S, Morris, P G, and Evangelou, N
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- 2011
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12. Effects of sulfhydryl agents on the activity of λ Ser/Thr phosphoprotein phosphatase and inhibition of the enzyme by zinc ion.
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Zhuo, S and Dixon, JE
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- 1997
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13. A review of the injuries of the ulnar collateral ligament of the thumb.
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Azad SM, Doebler C, Raine C, Dixon JE, Irvine BE, and Erdmann MWH
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- 2001
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14. Retrospective audit of access to care for children and young people diagnosed with localised scleroderma or juvenile systemic sclerosis in the United Kingdom
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Hawley Daniel P, Baildam Eileen M, Amin Tania S, Cruikshank Mary K, Davidson Joyce E, Dixon Jennifer, Martin Neil S, Ohlsson Victoria, Pilkington Clarissa A, Rangaraj Satyapal, Riley Philip, Sundaramoorthy Chitra, Walsh Jo, and Foster Helen E
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Pediatrics ,RJ1-570 ,Diseases of the musculoskeletal system ,RC925-935 - Published
- 2012
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15. A Modified Cell-Penetrating Peptide Enhances Insulin and Oxytocin Delivery across an RPMI 2650 Nasal Epithelial Cell Barrier In Vitro.
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Wong S, Brown AD, Abrahams AB, Nurzak AN, Eltaher HM, Sykes DA, Veprintsev DB, Fone KCF, Dixon JE, and King MV
- Abstract
Background/Objectives: Peptide-based treatments represent an expanding area and require innovative approaches to enhance bioavailability. Combination with cell-penetrating peptides (CPPs) is an attractive strategy to improve non-invasive delivery across nasal epithelial barriers for systemic and direct nose-to-brain transport. We previously developed a modified CPP system termed Glycosaminoglycan-binding Enhanced Transduction (GET) that improves insulin delivery across gastrointestinal epithelium. It contains a membrane docking sequence to promote cellular interactions (P21), a cationic polyarginine domain to stimulate uptake (8R) and an endosomal escaping sequence to maximize availability for onward distribution (LK15). It is synthesized as a single 44-residue peptide (P21-LK15-8R; PLR)., Methods: The current research used in vitro assays for a novel exploration of PLR's ability to improve the transport of two contrasting peptides, insulin (51 residues, net negative charge) and oxytocin (9 residues, weak positive charge) across an RPMI 2650 human nasal epithelial cell barrier cultured at the air-liquid interface., Results: PLR enhanced insulin transcytosis over a 6 h period by 7.8-fold when used at a 2:1 molar ratio of insulin/PLR ( p < 0.0001 versus insulin alone). Enhanced oxytocin transcytosis (5-fold) occurred with a 1:10 ratio of oytocin/PLR ( p < 0.01). Importantly, these were independent of any impact on transepithelial electrical resistance (TEER) or cell viability ( p > 0.05)., Conclusions: We advocate the continued evaluation of insulin-PLR and oxytocin-PLR formulations, including longer-term assessments of ciliotoxicity and cytotoxicity in vitro followed by in vivo assessments of systemic and nose-to-brain delivery.
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- 2024
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16. Combined biolistic and cell penetrating peptide delivery for the development of scalable intradermal DNA vaccines.
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So RB, Li G, Brentville V, Daly JM, and Dixon JE
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- Mice, Animals, Biolistics methods, Transfection, DNA chemistry, Cell-Penetrating Peptides chemistry, Vaccines, DNA, Nucleic Acids
- Abstract
Physical-based gene delivery via biolistic methods (such as the Helios gene gun) involve precipitation of nucleic acids onto microparticles and direct transfection through cell membranes of exposed tissue (e.g. skin) by high velocity acceleration. The glycosaminoglycan (GAG)-binding enhanced transduction (GET) system exploits novel fusion peptides consisting of cell-binding, nucleic acid condensing, and cell-penetrating domains, which enable enhanced transfection across multiple cell types. In this study, we combined chemical (GET) and physical (gene gun) DNA delivery systems, and hypothesized the combination would generate enhanced distribution and effective uptake in cells not initially transfected by biolistic penetration. Physicochemical characterization, optimization of bullet contents and transfection experiments in vitro in cell monolayers and engineered tissue demonstrated these formulations transfected efficiently, including DC2.4 dendritic cells. We incorporated these formulations into a biolistic format for gene gun by forming fireable dry bullets obtained via lyophilization (freeze drying). This system is simple and with enhanced scalability compared to conventional methods to generate bullets. Flushed GET bullet contents retained their ability to mediate transfection (17-fold greater and 13-fold greater reporter gene expression than standard spermidine bullets in the absence and presence of serum, respectively). Fired GET bullets in vitro (in cells and collagen gels) and in vivo (mice) showed increased reporter gene transfection compared to untreated controls, whilst maintaining cell viability in vitro and having no obvious toxicity in vivo. Lastly, a SARS-CoV-2 plasmid DNA vaccine with spike (S) protein-receptor binding domain (S-RBD) was delivered by gene gun using GET bullets. Specific T cell and antibody responses comparable to the conventional system were generated. The non-physical and physical combination of GET‑gold-DNA carriers using gene gun shows potential as an alternative DNA delivery method that is scalable for mass deployable vaccination and intradermal gene delivery., Competing Interests: Declaration of competing interest The authors declare no conflict of interest., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2024
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17. Effects of Microenvironment and Dosing on Efficiency of Enhanced Cell Penetrating Peptide Nonviral Gene Delivery.
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Dixon JE, Wellington V, Elnima A, and Eltaher HM
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Transfection, defined as functional delivery of cell-internalized nucleic acids, is dependent on many factors linked to formulation, vector, cell type, and microenvironmental culture conditions. We previously developed a technology termed glycosaminoglycan (GAG)-binding enhanced transduction (GET) to efficiently deliver a variety of cargoes intracellularly, using GAG-binding peptides and cell penetrating peptides (CPPs) in the form of nanoparticles, using conventional cell culture. Herein, we demonstrate that the most simple GET transfection formulation (employing the FLR peptide) is relatively poor at transfecting cells at increasingly lower dosages. However, with an endosomally escaping version (FLR:FLH peptide formulations) we demonstrate more effective transfection of cells with lower quantities of plasmid (p)DNA in vitro . We assessed the ability of single and serial delivery of our formulations to readily transfect cells and determined that temperature, pH, and atmospheric pressure can significantly affect transfected cell number and expression levels. Cytocompatible temperatures that maintain high cell metabolism (20-37 °C) were the optimal for transfection. Interestingly, serial delivery can maintain and enhance expression without viability being compromised, and alkaline pH conditions can aid overall efficiencies. Positive atmospheric pressures can also improve the transgene expression levels generated by GET transfection on a single-cell level. Novel nanotechnologies and gene therapeutics such as GET could be transformative for future regenerative medicine strategies. It will be important to understand how such approaches can be optimized at the formulation and application levels in order to achieve efficacy that will be competitive with viral strategies., Competing Interests: The authors declare no competing financial interest., (© 2024 The Authors. Published by American Chemical Society.)
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- 2024
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18. Orally-delivered insulin-peptide nanocomplexes enhance transcytosis from cellular depots and improve diabetic blood glucose control.
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Rehmani S, McLaughlin CM, Eltaher HM, Moffett RC, Flatt PR, and Dixon JE
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- Humans, Mice, Animals, Insulin pharmacology, Glycemic Control, Caco-2 Cells, Transcytosis, Administration, Oral, Blood Glucose, Diabetes Mellitus, Experimental drug therapy, Cell-Penetrating Peptides chemistry
- Abstract
Insulin regulates blood glucose levels, and is the mainstay for the treatment of type-1 diabetes and type-2 when other drugs provide inadequate control. Therefore, effective oral Insulin delivery would be a significant advance in drug delivery. Herein, we report the use of the modified cell penetrating peptide (CPP) platform, Glycosaminoglycan-(GAG)-binding-enhanced-transduction (GET), as an efficacious transepithelial delivery vector in vitro and to mediate oral Insulin activity in diabetic animals. Insulin can be conjugated with GET via electrostatic interaction to form nanocomplexes (Insulin GET-NCs). These NCs (size and charge; 140 nm, +27.10 mV) greatly enhanced Insulin transport in differentiated in vitro intestinal epithelium models (Caco2 assays; >22-fold increased translocation) with progressive and significant apical and basal release of up-taken Insulin. Delivery resulted in intracellular accumulation of NCs, enabling cells to act as depots for subsequent sustained release without affecting viability and barrier integrity. Importantly Insulin GET-NCs have enhanced proteolytic stability, and retained significant Insulin biological activity (exploiting Insulin-responsive reporter assays). Our study culminates in demonstrating oral delivery of Insulin GET-NCs which can control elevated blood-glucose levels in streptozotocin (STZ)-induced diabetic mice over several days with serial dosing. As GET promotes Insulin absorption, transcytosis and intracellular release, along with in vivo function, our simplistic complexation platform could allow effective bioavailability of other oral peptide therapeutics and help transform the treatment of diabetes., Competing Interests: Declaration of Competing Interest The authors declare no conflict of interest., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
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19. NANOG is required to establish the competence for germ-layer differentiation in the basal tetrapod axolotl.
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Simpson LA, Crowley D, Forey T, Acosta H, Ferjentsik Z, Chatfield J, Payne A, Simpson BS, Redwood C, Dixon JE, Holmes N, Sang F, Alberio R, Loose M, and Johnson AD
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- Animals, Ambystoma mexicanum genetics, Ambystoma mexicanum metabolism, Zebrafish genetics, Cell Differentiation, Nanog Homeobox Protein genetics, Nanog Homeobox Protein metabolism, Gene Expression Regulation, Developmental, Homeodomain Proteins metabolism, Pluripotent Stem Cells
- Abstract
Pluripotency defines the unlimited potential of individual cells of vertebrate embryos, from which all adult somatic cells and germ cells are derived. Understanding how the programming of pluripotency evolved has been obscured in part by a lack of data from lower vertebrates; in model systems such as frogs and zebrafish, the function of the pluripotency genes NANOG and POU5F1 have diverged. Here, we investigated how the axolotl ortholog of NANOG programs pluripotency during development. Axolotl NANOG is absolutely required for gastrulation and germ-layer commitment. We show that in axolotl primitive ectoderm (animal caps; ACs) NANOG and NODAL activity, as well as the epigenetic modifying enzyme DPY30, are required for the mass deposition of H3K4me3 in pluripotent chromatin. We also demonstrate that all 3 protein activities are required for ACs to establish the competency to differentiate toward mesoderm. Our results suggest the ancient function of NANOG may be establishing the competence for lineage differentiation in early cells. These observations provide insights into embryonic development in the tetrapod ancestor from which terrestrial vertebrates evolved., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Simpson et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2023
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20. Emerging mechanisms of regulation for endoplasmic/sarcoplasmic reticulum Ca2+ stores by secretory pathway kinase FAM20C.
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Mayfield JE and Dixon JE
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- Secretory Pathway, Endoplasmic Reticulum metabolism, Phosphotransferases metabolism, Sarcoplasmic Reticulum metabolism, Calcium metabolism
- Abstract
Eukaryotes depend upon the proper localization, accumulation, and release of intracellular Ca2+. This is regulated through specialized cellular compartments, signaling pathways, and Ca2+-binding proteins and channels. Cytosolic and extracellular signaling governing intracellular Ca2+ stores are well explored. However, regulatory signals within Ca2+ storage organelles like the endoplasmic/sarcoplasmic reticulum are not well understood. This is due to a lack of identified signaling molecules - like protein kinases - within these compartments, limited information on their regulation, and incomplete understanding of mechanisms involving modified substrates. Here we review recent advances in intralumenal signaling focusing on the secretory pathway protein kinase FAM20C and its regulation, Ca2+-binding protein substrates, and potential mechanisms through which FAM20C may regulate Ca2+ storage., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier Ltd.)
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- 2023
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21. Direct contact-mediated non-viral gene therapy using thermo-sensitive hydrogel-coated dressings.
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Eltaher HM, Blokpoel Ferreras LA, Jalal AR, and Dixon JE
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- Poloxamer chemistry, Bandages, Genetic Therapy, Hydrogels chemistry, Cell-Penetrating Peptides
- Abstract
Nanotechnologies are being increasingly applied as systems for peptide and nucleic acid macromolecule drug delivery. However systemic targeting of these, or efficient topical and localized delivery remains an issue. A controlled release system that can be patterned and locally administered such as topically to accessible tissue (skin, eye, intestine) would therefore be transformative in realizing the potential of such strategies. We previously developed a technology termed GAG-binding enhanced transduction (GET) to efficiently deliver a variety of cargoes intracellularly, using GAG-binding peptides to mediate cell targeting, and cell penetrating peptides (CPPs) to promote uptake. Herein we demonstrate that the GET transfection system can be used with the moisturizing thermo-reversible hydrogel Pluronic-F127 (PF127) and methyl cellulose (MC) to mediate site specific and effective intracellular transduction and gene delivery through GET nanoparticles (NPs). We investigated hydrogel formulation and the temperature dependence of delivery, optimizing the delivery system. GET-NPs retain their activity to enhance gene transfer within our formulations, with uptake transferred to cells in direct contact with the therapy-laden hydrogel. By using Azowipe™ material in a bandage approach, we were able to show for the first-time localized gene transfer in vitro on cell monolayers. The ability to simply control localization of gene delivery on millimetre scales using contact-mediated transfer from moisture-providing thermo-reversible hydrogels will facilitate new drug delivery methods. Importantly our technology to site-specifically deliver the activity of novel nanotechnologies and gene therapeutics could be transformative for future regenerative medicine., Competing Interests: Declaration of competing interest The authors declare no conflict of interest., (Copyright © 2022 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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22. Hippo pathway regulation by phosphatidylinositol transfer protein and phosphoinositides.
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Li FL, Fu V, Liu G, Tang T, Konradi AW, Peng X, Kemper E, Cravatt BF, Franklin JM, Wu Z, Mayfield J, Dixon JE, Gerwick WH, and Guan KL
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- Humans, Hippo Signaling Pathway, Phosphatidylinositols, Phospholipid Transfer Proteins metabolism, Phosphoproteins metabolism, Protein Serine-Threonine Kinases, Signal Transduction, Transcription Factors metabolism, Biological Products, Neoplasms
- Abstract
The Hippo pathway plays a key role in development, organ size control and tissue homeostasis, and its dysregulation contributes to cancer. The LATS tumor suppressor kinases phosphorylate and inhibit the YAP/TAZ transcriptional co-activators to suppress gene expression and cell growth. Through a screen of marine natural products, we identified microcolin B (MCB) as a Hippo activator that preferentially kills YAP-dependent cancer cells. Structure-activity optimization yielded more potent MCB analogs, which led to the identification of phosphatidylinositol transfer proteins α and β (PITPα/β) as the direct molecular targets. We established a critical role of PITPα/β in regulating LATS and YAP. Moreover, we showed that PITPα/β influence the Hippo pathway via plasma membrane phosphatidylinositol-4-phosphate. This study uncovers a previously unrecognized role of PITPα/β in Hippo pathway regulation and as potential cancer therapeutic targets., (© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.)
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- 2022
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23. Development of a Gene-Activated Scaffold Incorporating Multifunctional Cell-Penetrating Peptides for pSDF-1α Delivery for Enhanced Angiogenesis in Tissue Engineering Applications.
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Power RN, Cavanagh BL, Dixon JE, Curtin CM, and O'Brien FJ
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- Animals, Biocompatible Materials pharmacology, Chemokine CXCL12 pharmacology, Collagen chemistry, DNA chemistry, Durapatite chemistry, Endothelial Progenitor Cells metabolism, Glycosaminoglycans chemistry, Nanoparticles, Plasmids chemistry, Rats, Sprague-Dawley, Transfection, Rats, Cell-Penetrating Peptides pharmacology, Chemokine CXCL12 administration & dosage, Drug Delivery Systems, Neovascularization, Physiologic drug effects, Tissue Engineering, Tissue Scaffolds chemistry, Transcriptional Activation drug effects
- Abstract
Non-viral gene delivery has become a popular approach in tissue engineering, as it permits the transient delivery of a therapeutic gene, in order to stimulate tissue repair. However, the efficacy of non-viral delivery vectors remains an issue. Our lab has created gene-activated scaffolds by incorporating various non-viral delivery vectors, including the glycosaminoglycan-binding enhanced transduction (GET) peptide into collagen-based scaffolds with proven osteogenic potential. A modification to the GET peptide (FLR) by substitution of arginine residues with histidine (FLH) has been designed to enhance plasmid DNA (pDNA) delivery. In this study, we complexed pDNA with combinations of FLR and FLH peptides, termed GET* nanoparticles. We sought to enhance our gene-activated scaffold platform by incorporating GET* nanoparticles into collagen-nanohydroxyapatite scaffolds with proven osteogenic capacity. GET* N/P 8 was shown to be the most effective formulation for delivery to MSCs in 2D. Furthermore, GET* N/P 8 nanoparticles incorporated into collagen-nanohydroxyapatite (coll-nHA) scaffolds at a 1:1 ratio of collagen:nanohydroxyapatite was shown to be the optimal gene-activated scaffold. pDNA encoding stromal-derived factor 1α (pSDF-1α), an angiogenic chemokine which plays a role in BMP mediated differentiation of MSCs, was then delivered to MSCs using our optimised gene-activated scaffold platform, with the aim of significantly increasing angiogenesis as an important precursor to bone repair. The GET* N/P 8 coll-nHA scaffolds successfully delivered pSDF-1α to MSCs, resulting in a significant, sustained increase in SDF-1α protein production and an enhanced angiogenic effect, a key precursor in the early stages of bone repair.
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- 2022
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24. The Outcome of Endoscopic Radiofrequency Anti-Reflux Therapy (STRETTA) for Gastroesophageal Reflux Disease in Patients with Previous Gastric Surgery: A Prospective Cohort Study.
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Nevins EJ, Dixon JE, and Viswanath YKS
- Abstract
Background/aims: STRETTA improves the quality of life and reduces the need for anti-reflux medication in select patients, especially those with uncomplicated gastroesophageal reflux disease (GERD). We aimed to review the outcomes of STRETTA in patients with medically refractory GERD, who had undergone previous gastric surgery., Methods: This was a review of a prospective database in a British center. Since 2016, all GERD patients who underwent STRETTA and had a history of previous gastric surgery were studied (n=11). Anti-reflux medication pre- and post-STRETTA was evaluated. The outcomes were assessed objectively by the change in anti-reflux medication and subjectively through a pre- and post-procedure GERD-health-related quality of life (HRQL) questionnaire., Results: The median length of follow-up was 23 months. Nine patients demonstrated improved GERD-HRQL scores following STRETTA (82%). Of the 7 patients who underwent fundoplication, all reported improved symptoms, with 3 patients discontinuing the medication and 3 patients on a reduced dose of proton pump inhibitor. Four patients underwent surgery other than fundoplication, of which 2 reported improvement and discontinued the proton pump inhibitor. Two patients reported no improvement., Conclusion: This study demonstrates that STRETTA is successful in reducing refractory GERD in patients with previous gastric surgery. The outcomes were comparable to published outcomes in patients with uncomplicated GERD with no previous history of gastric surgery.
- Published
- 2021
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25. The stress-responsive kinase DYRK2 activates heat shock factor 1 promoting resistance to proteotoxic stress.
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Moreno R, Banerjee S, Jackson AW, Quinn J, Baillie G, Dixon JE, Dinkova-Kostova AT, Edwards J, and de la Vega L
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- Humans, Prognosis, Transcription Factors metabolism, Transfection, Dyrk Kinases, Heat Shock Transcription Factors genetics, Protein Serine-Threonine Kinases metabolism, Protein-Tyrosine Kinases metabolism
- Abstract
To survive proteotoxic stress, cancer cells activate the proteotoxic-stress response pathway, which is controlled by the transcription factor heat shock factor 1 (HSF1). This pathway supports cancer initiation, cancer progression and chemoresistance and thus is an attractive therapeutic target. As developing inhibitors against transcriptional regulators, such as HSF1 is challenging, the identification and targeting of upstream regulators of HSF1 present a tractable alternative strategy. Here we demonstrate that in triple-negative breast cancer (TNBC) cells, the dual specificity tyrosine-regulated kinase 2 (DYRK2) phosphorylates HSF1, promoting its nuclear stability and transcriptional activity. DYRK2 depletion reduces HSF1 activity and sensitises TNBC cells to proteotoxic stress. Importantly, in tumours from TNBC patients, DYRK2 levels positively correlate with active HSF1 and associates with poor prognosis, suggesting that DYRK2 could be promoting TNBC. These findings identify DYRK2 as a key modulator of the HSF1 transcriptional programme and a potential therapeutic target.
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- 2021
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26. Rapidly Transducing and Spatially Localized Magnetofection Using Peptide-Mediated Non-Viral Gene Delivery Based on Iron Oxide Nanoparticles.
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Blokpoel Ferreras LA, Chan SY, Vazquez Reina S, and Dixon JE
- Abstract
Non-viral delivery systems are generally of low efficiency, which limits their use in gene therapy and editing applications. We previously developed a technology termed glycosaminoglycan (GAG)-binding enhanced transduction (GET) to efficiently deliver a variety of cargos intracellularly; our system employs GAG-binding peptides, which promote cell targeting, and cell penetrating peptides (CPPs), which enhance endocytotic cell internalization. Herein, we describe a further modification by combining gene delivery and magnetic targeting with the GET technology. We associated GET peptides, plasmid (p)DNA, and iron oxide superparamagnetic nanoparticles (MNPs), allowing rapid and targeted GET-mediated uptake by application of static magnetic fields in NIH3T3 cells. This produced effective transfection levels (significantly higher than the control) with seconds to minutes of exposure and localized gene delivery two orders of magnitude higher in targeted over non-targeted cell monolayers using magnetic fields (in 15 min exposure delivering GFP reporter pDNA). More importantly, high cell membrane targeting by GET-DNA and MNP co-complexes and magnetic fields allowed further enhancement to endocytotic uptake, meaning that the nucleic acid cargo was rapidly internalized beyond that of GET complexes alone (GET-DNA). Magnetofection by MNPs combined with GET-mediated delivery allows magnetic field-guided local transfection in vitro and could facilitate focused gene delivery for future regenerative and disease-targeted therapies in vivo., Competing Interests: The authors declare no competing financial interest., (© 2020 American Chemical Society.)
- Published
- 2021
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27. The ABCs of the atypical Fam20 secretory pathway kinases.
- Author
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Worby CA, Mayfield JE, Pollak AJ, Dixon JE, and Banerjee S
- Subjects
- Casein Kinase I chemistry, Endoplasmic Reticulum metabolism, Extracellular Matrix Proteins chemistry, Homeostasis, Humans, Myocardium metabolism, Phosphorylation, Secretory Pathway, Signal Transduction, Structure-Activity Relationship, Substrate Specificity, Casein Kinase I metabolism, Extracellular Matrix Proteins metabolism
- Abstract
The study of extracellular phosphorylation was initiated in late 19th century when the secreted milk protein, casein, and egg-yolk protein, phosvitin, were shown to be phosphorylated. However, it took more than a century to identify Fam20C, which phosphorylates both casein and phosvitin under physiological conditions. This kinase, along with its family members Fam20A and Fam20B, defined a new family with altered amino acid sequences highly atypical from the canonical 540 kinases comprising the kinome. Fam20B is a glycan kinase that phosphorylates xylose residues and triggers peptidoglycan biosynthesis, a role conserved from sponges to human. The protein kinase, Fam20C, conserved from nematodes to humans, phosphorylates well over 100 substrates in the secretory pathway with overall functions postulated to encompass endoplasmic reticulum homeostasis, nutrition, cardiac function, coagulation, and biomineralization. The preferred phosphorylation motif of Fam20C is SxE/pS, and structural studies revealed that related member Fam20A allosterically activates Fam20C by forming a heterodimeric/tetrameric complex. Fam20A, a pseudokinase, is observed only in vertebrates. Loss-of-function genetic alterations in the Fam20 family lead to human diseases such as amelogenesis imperfecta, nephrocalcinosis, lethal and nonlethal forms of Raine syndrome with major skeletal defects, and altered phosphate homeostasis. Together, these three members of the Fam20 family modulate a diverse network of secretory pathway components playing crucial roles in health and disease. The overarching theme of this review is to highlight the progress that has been made in the emerging field of extracellular phosphorylation and the key roles secretory pathway kinases play in an ever-expanding number of cellular processes., Competing Interests: Conflict of interest The authors declare no conflicts of interest with the contents of this article., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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28. Enhanced Cellular Transduction of Nanoparticles Resistant to Rapidly Forming Plasma Protein Coronas.
- Author
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Blokpoel Ferreras LA, Scott D, Vazquez Reina S, Roach P, Torres TE, Goya GF, Shakesheff KM, and Dixon JE
- Subjects
- Cell-Penetrating Peptides chemistry, Cell-Penetrating Peptides metabolism, Cells, Cultured, Glycosaminoglycans chemistry, Glycosaminoglycans metabolism, Humans, Mesenchymal Stem Cells metabolism, Protein Corona metabolism, Drug Delivery Systems methods, Magnetite Nanoparticles chemistry, Protein Corona chemistry
- Abstract
Nanoparticles (NPs) are increasingly being developed as biomedical platforms for drug/nucleic acid delivery and imaging. However, in biological fluids, NPs interact with a wide range of proteins that form a coating known as protein corona. Coronae can critically influence self-interaction and binding of other molecules, which can affect toxicity, promote cell activation, and inhibit general or specific cellular uptake. Glycosaminoglycan (GAG)-binding enhanced transduction (GET) is developed to efficiently deliver a variety of cargoes intracellularly; employing GAG-binding peptides, which promote cell targeting, and cell penetrating peptides (CPPs) which enhance endocytotic cell internalization. Herein, it is demonstrated that GET peptide coatings can mediate sustained intracellular transduction of magnetic NPs (MNPs), even in the presence of serum or plasma. NP colloidal stability, physicochemical properties, toxicity and cellular uptake are investigated. Using label-free snapshot proteomics, time-resolved profiles of human plasma coronas formed on functionalized GET-MNPs demonstrate that coronae quickly form (<1 min), with their composition relatively stable but evolving. Importantly GET-MNPs present a subtly different corona composition to MNPs alone, consistent with GAG-binding activities. Understanding how NPs interact with biological systems and can retain enhanced intracellular transduction will facilitate novel drug delivery approaches for cell-type specific targeting of new nanomaterials., (© 2020 The Authors. Published by Wiley-VCH GmbH.)
- Published
- 2020
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29. POMK regulates dystroglycan function via LARGE1-mediated elongation of matriglycan.
- Author
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Walimbe AS, Okuma H, Joseph S, Yang T, Yonekawa T, Hord JM, Venzke D, Anderson ME, Torelli S, Manzur A, Devereaux M, Cuellar M, Prouty S, Ocampo Landa S, Yu L, Xiao J, Dixon JE, Muntoni F, and Campbell KP
- Subjects
- Animals, Male, Mannose chemistry, Mice, N-Acetylglucosaminyltransferases metabolism, Phosphorylation, Protein Kinases metabolism, Dystroglycans metabolism, Gene Expression, Muscle, Skeletal physiology, N-Acetylglucosaminyltransferases genetics, Protein Kinases genetics
- Abstract
Matriglycan [-GlcA-β1,3-Xyl-α1,3-]
n serves as a scaffold in many tissues for extracellular matrix proteins containing laminin-G domains including laminin, agrin, and perlecan. Like-acetyl-glucosaminyltransferase 1 (LARGE1) synthesizes and extends matriglycan on α-dystroglycan (α-DG) during skeletal muscle differentiation and regeneration; however, the mechanisms which regulate matriglycan elongation are unknown. Here, we show that Protein O -Mannose Kinase (POMK), which phosphorylates mannose of core M3 (GalNAc-β1,3-GlcNAc-β1,4-Man) preceding matriglycan synthesis, is required for LARGE1-mediated generation of full-length matriglycan on α-DG (~150 kDa). In the absence of Pomk gene expression in mouse skeletal muscle, LARGE1 synthesizes a very short matriglycan resulting in a ~ 90 kDa α-DG which binds laminin but cannot prevent eccentric contraction-induced force loss or muscle pathology. Solution NMR spectroscopy studies demonstrate that LARGE1 directly interacts with core M3 and binds preferentially to the phosphorylated form. Collectively, our study demonstrates that phosphorylation of core M3 by POMK enables LARGE1 to elongate matriglycan on α-DG, thereby preventing muscular dystrophy., Competing Interests: AW, HO, SJ, TY, TY, JH, DV, MA, ST, AM, MD, MC, SP, SO, LY, JX, JD, FM, KC No competing interests declared, (© 2020, Walimbe et al.)- Published
- 2020
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30. Genetically-programmed, mesenchymal stromal cell-laden & mechanically strong 3D bioprinted scaffolds for bone repair.
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Abu Awwad HAM, Thiagarajan L, Kanczler JM, Amer MH, Bruce G, Lanham S, Rumney RMH, Oreffo ROC, and Dixon JE
- Subjects
- Cell Differentiation, Humans, Osteogenesis, Tissue Engineering, Tissue Scaffolds, Bioprinting, Mesenchymal Stem Cells
- Abstract
Additive manufacturing processes used to create regenerative bone tissue engineered implants are not biocompatible, thereby restricting direct use with stem cells and usually require cell seeding post-fabrication. Combined delivery of stem cells with the controlled release of osteogenic factors, within a mechanically-strong biomaterial combined during manufacturing would replace injectable defect fillers (cements) and allow personalized implants to be rapidly prototyped by 3D bioprinting. Through the use of direct genetic programming via the sustained release of an exogenously delivered transcription factor RUNX2 (delivered as recombinant GET-RUNX2 protein) encapsulated in PLGA microparticles (MPs), we demonstrate that human mesenchymal stromal (stem) cells (hMSCs) can be directly fabricated into a thermo-sintered 3D bioprintable material and achieve effective osteogenic differentiation. Importantly we observed osteogenic programming of gene expression by released GET-RUNX2 (8.2-, 3.3- and 3.9-fold increases in OSX, RUNX2 and OPN expression, respectively) and calcification (von Kossa staining) in our scaffolds. The developed biodegradable PLGA/PEG paste formulation augments high-density bone development in a defect model (~2.4-fold increase in high density bone volume) and can be used to rapidly prototype clinically-sized hMSC-laden implants within minutes using mild, cytocompatible extrusion bioprinting. The ability to create mechanically strong 'cancellous bone-like' printable implants for tissue repair that contain stem cells and controlled-release of programming factors is innovative, and will facilitate the development of novel localized delivery approaches to direct cellular behaviour for many regenerative medicine applications including those for personalized bone repair., Competing Interests: Declaration of Competing Interest The authors declare no conflict of interest., (Copyright © 2020 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2020
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31. Human-scale tissues with patterned vascular networks by additive manufacturing of sacrificial sugar-protein composites.
- Author
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Eltaher HM, Abukunna FE, Ruiz-Cantu L, Stone Z, Yang J, and Dixon JE
- Subjects
- Carbohydrates, Humans, Printing, Three-Dimensional, Tissue Engineering, Sugars, Tissue Scaffolds
- Abstract
Combating necrosis, by supplying nutrients and removing waste, presents the major challenge for engineering large three-dimensional (3D) tissues. Previous elegant work used 3D printing with carbohydrate glass as a cytocompatible sacrificial template to create complex engineered tissues with vascular networks (Miller et al. 2012, Nature Materials). The fragile nature of this material compounded with the technical complexity needed to create high-resolution structures led us to create a flexible sugar-protein composite, termed Gelatin-sucrose matrix (GSM), to achieve a more robust and applicable material. Here we developed a low-range (25-37˚C) temperature sensitive formulation that can be moulded with micron-resolution features or cast during 3D printing to produce complex flexible filament networks forming sacrificial vessels. Using the temperature-sensitivity, we could control filament degeneration meaning GSM can be used with a variety of matrices and crosslinking strategies. Furthermore by incorporation of biocompatible crosslinkers into GSM directly, we could create thin endothelialized vessel walls and generate patterned tissues containing multiple matrices and cell-types. We also demonstrated that perfused vascular channels sustain metabolic function of a variety of cell-types including primary human cells. Importantly, we were able to construct vascularized human noses which otherwise would have been necrotic. Our material can now be exploited to create human-scale tissues for regenerative medicine applications. STATEMENT OF SIGNIFICANCE: Authentic and engineered tissues have demands for mass transport, exchanging nutrients and oxygen, and therefore require vascularization to retain viability and inhibit necrosis. Basic vascular networks must be included within engineered tissues intrinsically. Yet, this has been unachievable in physiologically-sized constructs with tissue-like cell densities until recently. Sacrificial moulding is an alternative in which networks of rigid lattices of filaments are created to prevent subsequent matrix ingress. Our study describes a biocompatible sacrificial sugar-protein formulation; GSM, made from mixtures of inexpensive and readily available bio-grade materials. GSM can be cast/moulded or bioprinted as sacrificial filaments that can rapidly dissolve in an aqueous environment temperature-sensitively. GSM material can be used to engineer viable and vascularized human-scale tissues for regenerative medicine applications., Competing Interests: Declaration of Competing Interest The authors declare no competing financial interests., (Copyright © 2020. Published by Elsevier Ltd.)
- Published
- 2020
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32. Efficient Delivery of Transducing Polymer Nanoparticles for Gene-Mediated Induction of Osteogenesis for Bone Regeneration.
- Author
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Jalal AR and Dixon JE
- Abstract
Developing non-viral gene therapy vectors that both protect and functionally deliver nucleic acid cargoes will be vital if gene augmentation and editing strategies are to be effectively combined with advanced regenerative medicine approaches. Currently such methodologies utilize high concentrations of recombinant growth factors, which result in toxicity and off-target effects. Herein we demonstrate the use of modified cell penetrating peptides (CPPs), termed Glycosaminoglycan (GAG)-binding Enhanced Transduction (GET) peptides with plasmid DNA (pDNA) encapsulated poly (lactic-co-glycolic acid) PLGA nanoparticles (pDNA-encapsulated PLGA NPs). In order to encapsulate the pDNA, it was first condensed with a cationic low molecular weight Poly L-Lysine (PLL) into 30-60 nm NPs followed by encapsulation in PLGA NPs by double emulsion; yielding encapsulation efficiencies (EE) of ∼30%. PLGA NPs complexed with GET peptides show enhanced intracellular delivery (up to sevenfold) and transfection efficiencies (up to five orders of magnitude). Moreover, the pDNA cargo has enhanced protection from nucleases (such as DNase I) promoting their translatability. As an example, we show these NPs efficiently deliver pBMP2 which can promote osteogenic differentiation in vitro . Gene delivery to human Mesenchymal Stromal Cells (hMSCs) inducing their osteogenic programming was confirmed by Alizarin red calcium staining and bone lineage specific gene expression (Q RT-PCR). By combining simplistic and FDA-approved PLGA polymer nanotechnology with the GET delivery system, therapeutic non-viral vectors could have significant impact in future cellular therapy and regenerative medicine applications., (Copyright © 2020 Jalal and Dixon.)
- Published
- 2020
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33. Identifying Functional Mechanisms in Psychotherapy: A Scoping Systematic Review.
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Carey TA, Griffiths R, Dixon JE, and Hines S
- Abstract
The identification of fundamental mechanisms is an important scientific pursuit in many fields of enquiry. With regard to the development of psychological treatments, understanding the mechanisms through which change occurs such that psychological distress resolves, can enable us to develop more effective and efficient interventions. In the field of psychotherapy, mechanisms are often identified either statistically or conceptually. The most powerful and useful mechanisms, however, are functional rather than statistical or conceptual. More specifically, with regard to mechanisms relevant to psychotherapy, it is difficult to identify what any of these mechanisms actually do in a mechanistic sense. That is, the mechanics of putative mechanisms are generally unspecified. In order to obtain a rigorous and comprehensive account of the current mechanisms in psychotherapy, as well as to evaluate their usefulness, a systematic scoping review was conducted. The systematic scoping review did not yield any mechanisms that were expressed in functional terms. We argue that, in order for psychotherapy to improve its effectiveness and efficiency, the standard for what is accepted as a useful mechanism needs to be substantially raised. Only functional mechanisms that express plausible actions consistent with known biological processes should be used to inform therapeutic interventions., (Copyright © 2020 Carey, Griffiths, Dixon and Hines.)
- Published
- 2020
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34. Reversible phosphorylation of Rpn1 regulates 26S proteasome assembly and function.
- Author
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Liu X, Xiao W, Zhang Y, Wiley SE, Zuo T, Zheng Y, Chen N, Chen L, Wang X, Zheng Y, Huang L, Lin S, Murphy AN, Dixon JE, Xu P, and Guo X
- Subjects
- Animals, CRISPR-Cas Systems genetics, Cell Line, Enzyme Assays, Gene Knock-In Techniques, Humans, Membrane Proteins genetics, Mice, Mice, Knockout, Mice, Transgenic, Mitochondria metabolism, Nuclear Proteins genetics, Oxidative Stress, Phosphoprotein Phosphatases genetics, Phosphorylation physiology, Proteasome Endopeptidase Complex genetics, Protein Serine-Threonine Kinases genetics, Protein Subunits genetics, RNA, Small Interfering metabolism, Serine metabolism, Trans-Activators genetics, Trans-Activators metabolism, Membrane Proteins metabolism, Nuclear Proteins metabolism, Phosphoprotein Phosphatases metabolism, Proteasome Endopeptidase Complex metabolism, Protein Serine-Threonine Kinases metabolism, Protein Subunits metabolism
- Abstract
The fundamental importance of the 26S proteasome in health and disease suggests that its function must be finely controlled, and yet our knowledge about proteasome regulation remains limited. Posttranslational modifications, especially phosphorylation, of proteasome subunits have been shown to impact proteasome function through different mechanisms, although the vast majority of proteasome phosphorylation events have not been studied. Here, we have characterized 1 of the most frequently detected proteasome phosphosites, namely Ser361 of Rpn1, a base subunit of the 19S regulatory particle. Using a variety of approaches including CRISPR/Cas9-mediated gene editing and quantitative mass spectrometry, we found that loss of Rpn1-S361 phosphorylation reduces proteasome activity, impairs cell proliferation, and causes oxidative stress as well as mitochondrial dysfunction. A screen of the human kinome identified several kinases including PIM1/2/3 that catalyze S361 phosphorylation, while its level is reversibly controlled by the proteasome-resident phosphatase, UBLCP1. Mechanistically, Rpn1-S361 phosphorylation is required for proper assembly of the 26S proteasome, and we have utilized a genetic code expansion system to directly demonstrate that S361-phosphorylated Rpn1 more readily forms a precursor complex with Rpt2, 1 of the first steps of 19S base assembly. These findings have revealed a prevalent and biologically important mechanism governing proteasome formation and function., Competing Interests: The authors declare no competing interest.
- Published
- 2020
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35. Inhibition of dual-specificity tyrosine phosphorylation-regulated kinase 2 perturbs 26S proteasome-addicted neoplastic progression.
- Author
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Banerjee S, Wei T, Wang J, Lee JJ, Gutierrez HL, Chapman O, Wiley SE, Mayfield JE, Tandon V, Juarez EF, Chavez L, Liang R, Sah RL, Costello C, Mesirov JP, de la Vega L, Cooper KL, Dixon JE, Xiao J, and Lei X
- Subjects
- ATPases Associated with Diverse Cellular Activities genetics, Animals, Cell Line, Tumor, Female, Gene Editing, Gene Expression Regulation, Gene Knockout Techniques, HEK293 Cells, Humans, Mice, Inbred BALB C, Mice, Inbred C57BL, Multiple Myeloma, Phosphorylation, Proteasome Endopeptidase Complex genetics, Proteasome Inhibitors pharmacology, Protein Serine-Threonine Kinases genetics, Protein-Tyrosine Kinases genetics, Triple Negative Breast Neoplasms pathology, Dyrk Kinases, Bortezomib pharmacology, Neoplastic Processes, Proteasome Endopeptidase Complex metabolism, Protein Serine-Threonine Kinases metabolism, Protein-Tyrosine Kinases metabolism, TYK2 Kinase metabolism, Triple Negative Breast Neoplasms metabolism
- Abstract
Dependence on the 26S proteasome is an Achilles' heel for triple-negative breast cancer (TNBC) and multiple myeloma (MM). The therapeutic proteasome inhibitor, bortezomib, successfully targets MM but often leads to drug-resistant disease relapse and fails in breast cancer. Here we show that a 26S proteasome-regulating kinase, DYRK2, is a therapeutic target for both MM and TNBC. Genome editing or small-molecule mediated inhibition of DYRK2 significantly reduces 26S proteasome activity, bypasses bortezomib resistance, and dramatically delays in vivo tumor growth in MM and TNBC thereby promoting survival. We further characterized the ability of LDN192960, a potent and selective DYRK2-inhibitor, to alleviate tumor burden in vivo. The drug docks into the active site of DYRK2 and partially inhibits all 3 core peptidase activities of the proteasome. Our results suggest that targeting 26S proteasome regulators will pave the way for therapeutic strategies in MM and TNBC., Competing Interests: The authors declare no competing interest., (Copyright © 2019 the Author(s). Published by PNAS.)
- Published
- 2019
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36. In vivo delivery of VEGF RNA and protein to increase osteogenesis and intraosseous angiogenesis.
- Author
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Rumney RMH, Lanham SA, Kanczler JM, Kao AP, Thiagarajan L, Dixon JE, Tozzi G, and Oreffo ROC
- Subjects
- Animals, Bone and Bones blood supply, Bone and Bones drug effects, Cell Line, Chickens, Humans, Mice, RNA genetics, Recombinant Proteins administration & dosage, Recombinant Proteins genetics, Vascular Endothelial Growth Factor A genetics, Neovascularization, Physiologic drug effects, Osteogenesis drug effects, RNA administration & dosage, Transfection, Vascular Endothelial Growth Factor A administration & dosage
- Abstract
Deficient bone vasculature is a key component in pathological conditions ranging from developmental skeletal abnormalities to impaired bone repair. Vascularisation is dependent upon vascular endothelial growth factor (VEGF), which drives both angiogenesis and osteogenesis. The aim of this study was to examine the efficacy of blood vessel and bone formation following transfection with VEGF RNA or delivery of recombinant human VEGF
165 protein (rhVEGF165 ) across in vitro and in vivo model systems. To quantify blood vessels within bone, an innovative approach was developed using high-resolution X-ray computed tomography (XCT) to generate quantifiable three-dimensional reconstructions. Application of rhVEGF165 enhanced osteogenesis, as evidenced by increased human osteoblast-like MG-63 cell proliferation in vitro and calvarial bone thickness following in vivo administration. In contrast, transfection with VEGF RNA triggered angiogenic effects by promoting VEGF protein secretion from MG-63VEGF165 cells in vitro, which resulted in significantly increased angiogenesis in the chorioallantoic (CAM) assay in ovo. Furthermore, direct transfection of bone with VEGF RNA in vivo increased intraosseous vascular branching. This study demonstrates the importance of continuous supply as opposed to a single high dose of VEGF on angiogenesis and osteogenesis and, illustrates the potential of XCT in delineating in 3D, blood vessel connectivity in bone.- Published
- 2019
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37. Ancestral roles of the Fam20C family of secreted protein kinases revealed in C. elegans .
- Author
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Gerson-Gurwitz A, Worby CA, Lee KY, Khaliullin R, Bouffard J, Cheerambathur D, Oegema K, Cram EJ, Dixon JE, and Desai A
- Subjects
- Animals, Caenorhabditis elegans metabolism, Casein Kinase I genetics, HEK293 Cells, Humans, Caenorhabditis elegans enzymology, Casein Kinase I metabolism
- Abstract
Fam20C is a secreted protein kinase mutated in Raine syndrome, a human skeletal disorder. In vertebrates, bone and enamel proteins are major Fam20C substrates. However, Fam20 kinases are conserved in invertebrates lacking bone and enamel, suggesting other ancestral functions. We show that FAMK-1, the Caenorhabditis elegans Fam20C orthologue, contributes to fertility, embryogenesis, and development. These functions are not fulfilled when FAMK-1 is retained in the early secretory pathway. During embryogenesis, FAMK-1 maintains intercellular partitions and prevents multinucleation; notably, temperature elevation or lowering cortical stiffness reduces requirement for FAMK-1 in these contexts. FAMK-1 is expressed in multiple adult tissues that undergo repeated mechanical strain, and selective expression in the spermatheca restores fertility. Informatic, biochemical, and functional analysis implicate lectins as FAMK-1 substrates. These findings suggest that FAMK-1 phosphorylation of substrates, including lectins, in the late secretory pathway is important in embryonic and tissue contexts where cells are subjected to mechanical strain., (© 2019 Gerson-Gurwitz et al.)
- Published
- 2019
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38. Highly versatile cell-penetrating peptide loaded scaffold for efficient and localised gene delivery to multiple cell types: From development to application in tissue engineering.
- Author
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Raftery RM, Walsh DP, Blokpoel Ferreras L, Mencía Castaño I, Chen G, LeMoine M, Osman G, Shakesheff KM, Dixon JE, and O'Brien FJ
- Subjects
- Animals, Bone Morphogenetic Protein 2 genetics, Cells, Cultured, Collagen chemistry, DNA genetics, Genetic Therapy, Male, Neovascularization, Physiologic, Osteogenesis, Rats, Sprague-Dawley, Rats, Wistar, Tissue Engineering, Vascular Endothelial Growth Factor A genetics, Cell-Penetrating Peptides chemistry, DNA administration & dosage, Gene Transfer Techniques, Tissue Scaffolds chemistry
- Abstract
Gene therapy has recently come of age with seven viral vector-based therapies gaining regulatory approval in recent years. In tissue engineering, non-viral vectors are preferred over viral vectors, however, lower transfection efficiencies and difficulties with delivery remain major limitations hampering clinical translation. This study describes the development of a novel multi-domain cell-penetrating peptide, GET, designed to enhance cell interaction and intracellular translocation of nucleic acids; combined with a series of porous collagen-based scaffolds with proven regenerative potential for different indications. GET was capable of transfecting cell types from all three germ layers, including stem cells, with an efficiency comparable to Lipofectamine
® 3000, without inducing cytotoxicity. When implanted in vivo, GET gene-activated scaffolds allowed for host cell infiltration, transfection localized to the implantation site and sustained, but transient, changes in gene expression - demonstrating both the efficacy and safety of the approach. Finally, GET carrying osteogenic (pBMP-2) and angiogenic (pVEGF) genes were incorporated into collagen-hydroxyapatite scaffolds and with a single 2 μg dose of therapeutic pDNA, induced complete repair of critical-sized bone defects within 4 weeks. GET represents an exciting development in gene therapy and by combining it with a scaffold-based delivery system offers tissue engineering solutions for a myriad of regenerative indications., (Copyright © 2019 Elsevier Ltd. All rights reserved.)- Published
- 2019
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39. Mechanistic insight into heterogeneity of trans-plasma membrane electron transport in cancer cell types.
- Author
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Sherman HG, Jovanovic C, Abuawad A, Kim DH, Collins H, Dixon JE, Cavanagh R, Markus R, Stolnik S, and Rawson FJ
- Subjects
- Ascorbic Acid metabolism, Cell Line, Tumor, Cytochrome b Group, Energy Metabolism, Humans, Lung Neoplasms metabolism, Oxidation-Reduction, Oxidoreductases, Cell Membrane metabolism, Electron Transport, Lung Neoplasms pathology
- Abstract
Trans-plasma membrane electron transfer (tMPET) is a process by which reducing equivalents, either electrons or reductants like ascorbic acid, are exported to the extracellular environment by the cell. TPMET is involved in a number of physiological process and has been hypothesised to play a role in the redox regulation of cancer metabolism. Here, we use a new electrochemical assay to elucidate the 'preference' of cancer cells for different trans tPMET systems. This aids in proving a biochemical framework for the understanding of tPMET role, and for the development of novel tPMET-targeting therapeutics. We have delineated the mechanism of tPMET in 3 lung cancer cell models to show that the external electron transfer is orchestrated by ascorbate mediated shuttling via tPMET. In addition, the cells employ a different, non-shuttling-based mechanism based on direct electron transfer via Dcytb. Results from our investigations indicate that tPMETs are used differently, depending on the cell type. The data generated indicates that tPMETs may play a fundamental role in facilitation of energy reprogramming in malignant cells, whereby tPMETs are utilised to supply the necessary energy requirement when mitochondrial stress occurs. Our findings instruct a deeper understanding of tPMET systems, and show how different cancer cells may preferentially use distinguishable tPMET systems for cellular electron transfer processes., (Copyright © 2019 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2019
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40. Molecular phenotyping of the surfaceome of migratory chondroprogenitors and mesenchymal stem cells using biotinylation, glycocapture and quantitative LC-MS/MS proteomic analysis.
- Author
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Matta C, Boocock DJ, Fellows CR, Miosge N, Dixon JE, Liddell S, Smith J, and Mobasheri A
- Subjects
- Biotinylation, Cartilage, Articular cytology, Cartilage, Articular metabolism, Cell Differentiation, Cells, Cultured, Chondrogenesis, Chromatography, Liquid methods, Humans, Membrane Proteins classification, Osteoarthritis, Knee metabolism, Osteoarthritis, Knee pathology, Phenotype, Proteome classification, Proteomics statistics & numerical data, Tandem Mass Spectrometry methods, Chondrocytes metabolism, Membrane Proteins metabolism, Mesenchymal Stem Cells metabolism, Proteome metabolism, Proteomics methods, Stem Cells metabolism
- Abstract
The complement of cell surface proteins, collectively referred to as the surfaceome, is a useful indicator of normal differentiation processes, and the development of pathologies such as osteoarthritis (OA). We employed biochemical and proteomic tools to explore the surfaceome and to define biomarkers in chondrogenic progenitor cells (CPC) derived from human OA knee articular cartilage. These cells have great therapeutic potential, but their unexplored biology limits their clinical application. We performed biotinylation combined with glycocapture and high throughput shotgun proteomics to define the surface proteome of human bone marrow mesenchymal stem cells (MSCs) and human CPCs. We prepared cell surface protein-enriched fractions from MSCs and CPCs, and then a proteomic approach was used to compare and evaluate protein changes between undifferentiated MSCs and CPCs. 1256 proteins were identified in the study, of which 791 (63%) were plasma membrane, cell surface or extracellular matrix proteins. Proteins constituting the surfaceome were annotated and categorized. Our results provide, for the first time, a repository of quantitative proteomic data on the surfaceome of two closely related cell types relevant to cartilage biology and OA. These results may provide novel insights into the transformation of the surfaceome during chondrogenic differentiation and phenotypic changes during OA development.
- Published
- 2019
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41. Reversible phosphorylation: a birthday tribute to Herb Tabor.
- Author
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Worby CA and Dixon JE
- Subjects
- History, 20th Century, History, 21st Century, Humans, Phosphorylation, Biochemistry history, Periodicals as Topic, Protein Tyrosine Phosphatases metabolism, Protein-Tyrosine Kinases metabolism
- Abstract
Herb Tabor was the Editor-in-Chief of the Journal of Biological Chemistry (JBC) spanning the years 1971-2010. This year, Herb turns 100. What do you give a person turning 100? Our answer to this question was to dedicate two of our favorite JBC papers to Herb. Both of these papers focus on reversible phosphorylation, which we briefly review. In addition, we delve into a new finding that centers around a novel family of secreted kinases, suggesting that there are many new and exciting discoveries yet to explore., (© 2019 Worby and Dixon.)
- Published
- 2019
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42. Ex vivo MRI cell tracking of autologous mesenchymal stromal cells in an ovine osteochondral defect model.
- Author
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Markides H, Newell KJ, Rudorf H, Ferreras LB, Dixon JE, Morris RH, Graves M, Kaggie J, Henson F, and El Haj AJ
- Subjects
- Animals, Bone Marrow Cells cytology, Bone Marrow Cells drug effects, Cell Differentiation drug effects, Cell Survival drug effects, Ferric Compounds pharmacology, Knee Joint diagnostic imaging, Knee Joint physiopathology, Magnetic Resonance Imaging, Mesenchymal Stem Cells drug effects, Sheep, Synovial Membrane cytology, Synovial Membrane transplantation, Cell Tracking, Mesenchymal Stem Cell Transplantation, Mesenchymal Stem Cells cytology
- Abstract
Background: Osteochondral injuries represent a significant clinical problem requiring novel cell-based therapies to restore function of the damaged joint with the use of mesenchymal stromal cells (MSCs) leading research efforts. Pre-clinical studies are fundamental in translating such therapies; however, technologies to minimally invasively assess in vivo cell fate are currently limited. We investigate the potential of a MRI- (magnetic resonance imaging) and superparamagnetic iron oxide nanoparticle (SPION)-based technique to monitor cellular bio-distribution in an ovine osteochondral model of acute and chronic injuries., Methods: MSCs were isolated, expanded and labelled with Nanomag, a 250-nm SPION, and using a novel cell-penetrating technique, glycosaminoglycan-binding enhanced transduction (GET). MRI visibility thresholds, cellular toxicity and differentiation potential post-labelling were assessed in vitro. A single osteochondral defect was created in the medial femoral condyle in the left knee joint of each sheep with the contralateral joint serving as the control. Cells, either GET-Nanomag labelled or unlabelled, were delivered 1 week or 4.5 weeks later. Sheep were sacrificed 7 days post implantation and immediately MR imaged using a 0.2-T MRI scanner and validated on a 3-T MRI scanner prior to histological evaluation., Results: MRI data demonstrated a significant increase in MRI contrast as a result of GET-Nanomag labelling whilst cell viability, proliferation and differentiation capabilities were not affected. MRI results revealed evidence of implanted cells within the synovial joint of the injured leg of the chronic model only with no signs of cell localisation to the defect site in either model. This was validated histologically determining the location of implanted cells in the synovium. Evidence of engulfment of Nanomag-labelled cells by leukocytes is observed in the injured legs of the chronic model only. Finally, serum c-reactive protein (CRP) levels were measured by ELISA with no obvious increase in CRP levels observed as a result of P21-8R:Nanomag delivery., Conclusion: This study has the potential to be a powerful translational tool with great implications in the clinical translation of stem cell-based therapies. Further, we have demonstrated the ability to obtain information linked to key biological events occurring post implantation, essential in designing therapies and selecting pre-clinical models.
- Published
- 2019
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43. Discovery of peptide ligands targeting a specific ubiquitin-like domain-binding site in the deubiquitinase USP11.
- Author
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Spiliotopoulos A, Blokpoel Ferreras L, Densham RM, Caulton SG, Maddison BC, Morris JR, Dixon JE, Gough KC, and Dreveny I
- Subjects
- Amino Acid Sequence, Animals, Binding Sites, Cell Line, Crystallography, X-Ray, DNA Repair, Homologous Recombination, Humans, Kinetics, Ligands, Mice, Molecular Sequence Data, Peptides genetics, Protein Domains, Thiolester Hydrolases genetics, Ubiquitin chemistry, Ubiquitin metabolism, Ubiquitination, Peptides chemistry, Peptides metabolism, Thiolester Hydrolases chemistry, Thiolester Hydrolases metabolism
- Abstract
Ubiquitin-specific proteases (USPs) reverse ubiquitination and regulate virtually all cellular processes. Defined noncatalytic domains in USP4 and USP15 are known to interact with E3 ligases and substrate recruitment factors. No such interactions have been reported for these domains in the paralog USP11, a key regulator of DNA double-strand break repair by homologous recombination. We hypothesized that USP11 domains adjacent to its protease domain harbor unique peptide-binding sites. Here, using a next-generation phage display (NGPD) strategy, combining phage display library screening with next-generation sequencing, we discovered unique USP11-interacting peptide motifs. Isothermal titration calorimetry disclosed that the highest affinity peptides ( K
D of ∼10 μm) exhibit exclusive selectivity for USP11 over USP4 and USP15 in vitro Furthermore, a crystal structure of a USP11-peptide complex revealed a previously unknown binding site in USP11's noncatalytic ubiquitin-like (UBL) region. This site interacted with a helical motif and is absent in USP4 and USP15. Reporter assays using USP11-WT versus a binding pocket-deficient double mutant disclosed that this binding site modulates USP11's function in homologous recombination-mediated DNA repair. The highest affinity USP11 peptide binder fused to a cellular delivery sequence induced significant nuclear localization and cell cycle arrest in S phase, affecting the viability of different mammalian cell lines. The USP11 peptide ligands and the paralog-specific functional site in USP11 identified here provide a framework for the development of new biochemical tools and therapeutic agents. We propose that an NGPD-based strategy for identifying interacting peptides may be applied also to other cellular targets., (© 2019 Spiliotopoulos et al.)- Published
- 2019
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44. Enzymatic Phosphorylation of Ser in a Type I Collagen Peptide.
- Author
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Qiu Y, Poppleton E, Mekkat A, Yu H, Banerjee S, Wiley SE, Dixon JE, Kaplan DL, Lin YS, and Brodsky B
- Subjects
- Amino Acid Sequence, Molecular Dynamics Simulation, Peptide Fragments chemistry, Peptide Fragments metabolism, Phosphorylation, Protein Conformation, alpha-Helical, Protein Folding, Protein Stability, Collagen Type I chemistry, Collagen Type I metabolism, Mitogen-Activated Protein Kinase 3 metabolism, Serine metabolism
- Abstract
Phosphoproteomics studies have reported phosphorylation at multiple sites within collagen, raising the possibility that these post-translational modifications regulate the physical or biological properties of collagen. In this study, molecular dynamics simulations and experimental studies were carried out on model peptides to establish foundational principles of phosphorylation of Ser residues in collagen. A (Gly-Xaa-Yaa)
11 peptide was designed to include a Ser-containing sequence from type I collagen that was reported to be phosphorylated. The physiological kinase involved in collagen phosphorylation is not known. In vitro studies showed that a model kinase ERK1 (extracellular signal-regulated protein kinase 1) would phosphorylate Ser within the consensus sequence if the collagen-like peptide is in the denatured state but not in the triple-helical state. The peptide was not a substrate for FAM20C, a kinase present in the secretory pathway, which has been shown to phosphorylate many extracellular matrix proteins. The unfolded single chain (Gly-Xaa-Yaa)11 peptide containing phosphoSer was able to refold to form a stable triple helix but at a reduced folding rate and with a small decrease in thermal stability relative to the nonphosphorylated peptide at neutral pH. These biophysical studies on model peptides provide a basis for investigations into the physiological consequences of collagen phosphorylation and the application of phosphorylation to regulate the properties of collagen biomaterials., (Copyright © 2018 Biophysical Society. Published by Elsevier Inc. All rights reserved.)- Published
- 2018
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45. A secretory pathway kinase regulates sarcoplasmic reticulum Ca 2+ homeostasis and protects against heart failure.
- Author
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Pollak AJ, Liu C, Gudlur A, Mayfield JE, Dalton ND, Gu Y, Chen J, Heller Brown J, Hogan PG, Wiley SE, Peterson KL, and Dixon JE
- Subjects
- Animals, Calcium chemistry, Calcium metabolism, Calcium Signaling genetics, Calcium-Binding Proteins chemistry, Calsequestrin chemistry, Endoplasmic Reticulum chemistry, Endoplasmic Reticulum genetics, Extracellular Matrix Proteins chemistry, Heart Failure pathology, Homeostasis, Humans, Mice, Myocytes, Cardiac metabolism, Myocytes, Cardiac pathology, Phosphorylation, Phosphotransferases genetics, Sarcoplasmic Reticulum chemistry, Sarcoplasmic Reticulum genetics, Secretory Pathway genetics, Stromal Interaction Molecule 1 chemistry, Calcium-Binding Proteins genetics, Calsequestrin genetics, Extracellular Matrix Proteins genetics, Heart Failure genetics, Stromal Interaction Molecule 1 genetics
- Abstract
Ca
2+ signaling is important for many cellular and physiological processes, including cardiac function. Although sarcoplasmic reticulum (SR) proteins involved in Ca2+ signaling have been shown to be phosphorylated, the biochemical and physiological roles of protein phosphorylation within the lumen of the SR remain essentially uncharacterized. Our laboratory recently identified an atypical protein kinase, Fam20C, which is uniquely localized to the secretory pathway lumen. Here, we show that Fam20C phosphorylates several SR proteins involved in Ca2+ signaling, including calsequestrin2 and Stim1, whose biochemical activities are dramatically regulated by Fam20C mediated phosphorylation. Notably, phosphorylation of Stim1 by Fam20C enhances Stim1 activation and store-operated Ca2+ entry. Physiologically, mice with Fam20c ablated in cardiomyocytes develop heart failure following either aging or induced pressure overload. We extended these observations to show that non-muscle cells lacking Fam20C display altered ER Ca2+ signaling. Overall, we show that Fam20C plays an overarching role in ER/SR Ca2+ homeostasis and cardiac pathophysiology., Competing Interests: AP, CL, AG, JM, ND, YG, JC, JH, PH, SW, KP, JD No competing interests declared, (© 2018, Pollak et al.)- Published
- 2018
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46. PEGylated enhanced cell penetrating peptide nanoparticles for lung gene therapy.
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Osman G, Rodriguez J, Chan SY, Chisholm J, Duncan G, Kim N, Tatler AL, Shakesheff KM, Hanes J, Suk JS, and Dixon JE
- Subjects
- Animals, Cell Line, Cell-Penetrating Peptides chemistry, Cystic Fibrosis genetics, Cystic Fibrosis metabolism, Cystic Fibrosis therapy, DNA genetics, DNA therapeutic use, Glycosaminoglycans metabolism, Humans, Mice, Nanoparticles chemistry, Polyethylene Glycols chemistry, Transfection methods, Cell-Penetrating Peptides metabolism, DNA administration & dosage, Gene Transfer Techniques, Genetic Therapy methods, Lung metabolism, Nanoparticles metabolism, Polyethylene Glycols metabolism
- Abstract
The lung remains an attractive target for the gene therapy of monogenetic diseases such as cystic fibrosis (CF). Despite over 27 clinical trials, there are still very few gene therapy vectors that have shown any improvement in lung function; highlighting the need to develop formulations with improved gene transfer potency and the desirable physiochemical characteristics for efficacious therapy. Herein, we introduce a novel cell penetrating peptide (CPP)-based non-viral vector that utilises glycosaminoglycan (GAG)-binding enhanced transduction (GET) for highly efficient gene transfer. GET peptides couple directly with DNA through electrostatic interactions to form nanoparticles (NPs). In order to adapt the GET peptide for efficient in vivo delivery, we engineered PEGylated versions of the peptide and employed a strategy to form DNA NPs with different densities of PEG coatings. We were able to identify candidate formulations (PEGylation rates ≥40%) that shielded the positively charged surface of particles, maintained colloidal stability in bronchoalveolar lavage fluid (BALF) and retained gene transfer activity in human bronchial epithelial cell lines and precision cut lung slices (PCLS) in vitro. Using multiple particle tracking (MPT) technology, we demonstrated that PEG-GET complexes were able to navigate the mucus mesh and diffuse rapidly through patient CF sputum samples ex vivo. When tested in mouse lung models in vivo, PEGylated particles demonstrated superior biodistribution, improved safety profiles and efficient gene transfer of a reporter luciferase plasmid compared to non-PEGylated complexes. Furthermore, gene expression was significantly enhanced in comparison to polyethylenimine (PEI), a non-viral gene carrier that has been widely tested in pre-clinical settings. This work describes an innovative approach that combines novel GET peptides for enhanced transfection with a tuneable PEG coating for efficacious lung gene therapy., (Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2018
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47. Ancient drug curcumin impedes 26S proteasome activity by direct inhibition of dual-specificity tyrosine-regulated kinase 2.
- Author
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Banerjee S, Ji C, Mayfield JE, Goel A, Xiao J, Dixon JE, and Guo X
- Subjects
- Animals, Antineoplastic Agents therapeutic use, Apoptosis drug effects, CRISPR-Cas Systems, Cell Proliferation drug effects, Crystallography, X-Ray, Curcumin therapeutic use, Drug Synergism, Female, Gene Editing methods, Gene Knockout Techniques methods, HEK293 Cells, Humans, Inhibitory Concentration 50, Mice, Neoplasms pathology, Oligopeptides pharmacology, Proteasome Inhibitors pharmacology, Protein Serine-Threonine Kinases chemistry, Protein Serine-Threonine Kinases genetics, Protein Serine-Threonine Kinases metabolism, Protein-Tyrosine Kinases chemistry, Protein-Tyrosine Kinases genetics, Protein-Tyrosine Kinases metabolism, Signal Transduction drug effects, Tumor Burden drug effects, Xenograft Model Antitumor Assays, Dyrk Kinases, Antineoplastic Agents pharmacology, Curcumin pharmacology, Neoplasms drug therapy, Proteasome Endopeptidase Complex metabolism, Protein Serine-Threonine Kinases antagonists & inhibitors, Protein-Tyrosine Kinases antagonists & inhibitors
- Abstract
Curcumin, the active ingredient in Curcuma longa , has been in medicinal use since ancient times. However, the therapeutic targets and signaling cascades modulated by curcumin have been enigmatic despite extensive research. Here we identify dual-specificity tyrosine-regulated kinase 2 (DYRK2), a positive regulator of the 26S proteasome, as a direct target of curcumin. Curcumin occupies the ATP-binding pocket of DYRK2 in the cocrystal structure, and it potently and specifically inhibits DYRK2 over 139 other kinases tested in vitro. As a result, curcumin diminishes DYRK2-mediated 26S proteasome phosphorylation in cells, leading to reduced proteasome activity and impaired cell proliferation. Interestingly, curcumin synergizes with the therapeutic proteasome inhibitor carfilzomib to induce apoptosis in a variety of proteasome-addicted cancer cells, while this drug combination exhibits modest to no cytotoxicity to noncancerous cells. In a breast cancer xenograft model, curcumin treatment significantly reduces tumor burden in immunocompromised mice, showing a similar antitumor effect as CRISPR/Cas9-mediated DYRK2 depletion. These results reveal an unexpected role of curcumin in DYRK2-proteasome inhibition and provide a proof-of-concept that pharmacological manipulation of proteasome regulators may offer new opportunities for anticancer treatment., Competing Interests: The authors declare no conflict of interest., (Copyright © 2018 the Author(s). Published by PNAS.)
- Published
- 2018
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48. Structure and evolution of the Fam20 kinases.
- Author
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Zhang H, Zhu Q, Cui J, Wang Y, Chen MJ, Guo X, Tagliabracci VS, Dixon JE, and Xiao J
- Subjects
- Animals, Catalytic Domain, Crystallography, X-Ray, Humans, Hydrogen Bonding, Insecta, Mutation, Phosphorylation, Phylogeny, Polysaccharides chemistry, Protein Multimerization, Proteoglycans chemistry, Substrate Specificity, Xylose chemistry, Casein Kinase I chemistry, Extracellular Matrix Proteins chemistry, Phosphotransferases (Alcohol Group Acceptor) metabolism
- Abstract
The Fam20 proteins are novel kinases that phosphorylate secreted proteins and proteoglycans. Fam20C phosphorylates hundreds of secreted proteins and is activated by the pseudokinase Fam20A. Fam20B phosphorylates a xylose residue to regulate proteoglycan synthesis. Despite these wide-ranging and important functions, the molecular and structural basis for the regulation and substrate specificity of these kinases are unknown. Here we report molecular characterizations of all three Fam20 kinases, and show that Fam20C is activated by the formation of an evolutionarily conserved homodimer or heterodimer with Fam20A. Fam20B has a unique active site for recognizing Galβ1-4Xylβ1, the initiator disaccharide within the tetrasaccharide linker region of proteoglycans. We further show that in animals the monomeric Fam20B preceded the appearance of the dimeric Fam20C, and the dimerization trait of Fam20C emerged concomitantly with a change in substrate specificity. Our results provide comprehensive structural, biochemical, and evolutionary insights into the function of the Fam20 kinases.
- Published
- 2018
- Full Text
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49. Oral delivery of anti-diabetes therapeutics using cell penetrating and transcytosing peptide strategies.
- Author
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Rehmani S and Dixon JE
- Subjects
- Administration, Oral, Cell-Penetrating Peptides chemistry, Diabetes Mellitus pathology, Drug Delivery Systems, Humans, Hydrophobic and Hydrophilic Interactions, Intestinal Absorption drug effects, Nanoparticles chemistry, Permeability drug effects, Cell-Penetrating Peptides therapeutic use, Diabetes Mellitus drug therapy, Insulin metabolism, Nanoparticles therapeutic use
- Abstract
Oral delivery of insulin and other anti-diabetic peptides is inhibited by low intestinal absorption caused by the poor permeability across cellular membranes and the susceptibility to enzymatic degradation in the gastrointestinal tract. Cell-penetrating peptides (CPPs) have been investigated for a number of years as oral absorption enhancers for hydrophilic macromolecules by electrostatic or covalent conjugation on in conjunction with nanotechnology. Endogenous cellular uptake mechanisms present in the intestine can be exploited by engineering peptide conjugates that transcytose; entering cells by endocytosis and leaving by exocytosis. Efficiently delivering hydrophilic and sensitive peptide drugs to safely transverse the digestive barrier with no effect on gut physiology using remains a key driver for formulation research. Here we review the use of CPP and transcytosis peptide approaches, their modification and use in delivering anti-diabetic peptides (with the primary example of Insulin and engineered homologues) by direct oral administration to treat diabetes and associated metabolic disorders., (Crown Copyright © 2017. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
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50. Post-Modified Polypeptides with UCST-Type Behavior for Control of Cell Attachment in Physiological Conditions.
- Author
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Xue X, Thiagarajan L, Dixon JE, Saunders BR, Shakesheff KM, and Alexander C
- Abstract
Upper Critical Solution Temperature (UCST)-type thermally responsive polypeptides (TRPs) with phase transition temperatures around 37 °C in phosphate-buffered saline (PBS) buffer (pH 7.4, 100 mM) were prepared from poly(l-ornithine) hydrobromide and coated on non-tissue culture-treated plastic plates (nTCP). Cell adhesion was observed at temperatures above the phase transition temperature of the coating polymer (39 °C), while cell release was triggered when the culture temperature was switched to 37 °C. Approximately 65% of the attached cells were released from the surface within 6 h after changing the temperature, and more than 96% of the released cells were viable. Water contact angle measurements performed at 39 and 37 °C demonstrated that the surface hydrophobicity of the new TRP coatings changed in response to applied temperature. The cell attachment varied with the presence of serum in the media, suggesting that the TRP coatings mediated cell attachment and release as the underlying polymer surface changed conformation and consequently the display of adsorbed protein. These new TRP coatings provide an additional means to mediate cell attachment for application in cell-based tissue regeneration and therapies., Competing Interests: The authors declare no conflict of interest.
- Published
- 2018
- Full Text
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