31 results on '"Dmitry Isaev"'
Search Results
2. Deep Learning for Quality Control of Subcortical Brain 3D Shape Models.
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Dmitry Petrov, Boris A. Gutman, Egor Kuznetsov, Christopher R. K. Ching, Kathryn I. Alpert, Artemis Zavaliangos-Petropulu, Dmitry Isaev, Jessica A. Turner, Theo G. M. van Erp, Lei Wang 0032, Lianne Schmaal, Dick J. Veltman, and Paul M. Thompson
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- 2018
- Full Text
- View/download PDF
3. Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging.
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Dmitry Petrov, Boris A. Gutman, Shih-Hua (Julie) Yu, Kathryn I. Alpert, Artemis Zavaliangos-Petropulu, Dmitry Isaev, Jessica A. Turner, Theo G. M. van Erp, Lei Wang 0032, Lianne Schmaal, Dick J. Veltman, and Paul M. Thompson
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- 2017
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4. Shorter average look durations to dynamic social stimuli are associated with higher levels of autism symptoms in young autistic children
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Samantha Major, Dmitry Isaev, Jordan Grapel, Todd Calnan, Elena Tenenbaum, Kimberly Carpenter, Lauren Franz, Jill Howard, Saritha Vermeer, Guillermo Sapiro, Michael Murias, and Geraldine Dawson
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Social Skills ,Autism Spectrum Disorder ,Developmental and Educational Psychology ,Humans ,Attention ,Autistic Disorder ,Child - Abstract
Prior eye-tracking studies involving autistic individuals have focused on total looking time or proportion of looking time to key regions of interest. These studies have not examined another important feature, the ability to sustain attention to stimuli. In particular, the ability to sustain attention to a dynamic social stimulus might reflect more advanced self-regulatory skills that may enhance engagement with and comprehension of social information. In a sample of 155 autistic children (2–8 years of age), we examined children’s average look duration while they viewed a complex, dynamic stimulus containing both social and nonsocial elements. After accounting for children’s age and intelligence quotient, we found that shorter average look duration was associated with increased autism spectrum disorder severity across multiple clinical measures. To calculate average look duration, we divided the length of total looking time in seconds by the total number of uninterrupted looks to the video media. Thus, the ability to sustain attention while viewing complex dynamic information could be important for comprehending dynamic social information. Lay Abstract Many studies of autism look at the differences in how autistic research participants look at certain types of images. These studies often focus on where research participants are looking within the image, but that does not tell us everything about how much they are paying attention. It could be useful to know more about how well autistic research participants can focus on an image with people in it, because those who can look at images of people for longer duration without stopping may be able to easily learn other skills that help them to interact with people. We measured how long autistic research participants watched the video without breaking their attention. The video sometimes had a person speaking, and at other times had toys moving and making sounds. We measured the typical amount of time autistic research participants could look at the video before they looked away. We found that research participants with more severe autism tended to look at the video for shorter amounts of time. The ability to focus without stopping may be related to social skills in autistic people.
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- 2021
5. Effect of Bulky Anion around the Dication on the Electronic Structure and Normal Frequencies in 1,3-Bis(3-methylimidazolium-1-yl)propane Bis(trifluoromethanesulfonyl)imide Ionic Liquid
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Dmitry Isaev, Sherly Latortue, Kyung Seol, Michelle Helminen, Nilesh R. Dhumal, and Brooke Williams
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Quantitative Biology::Biomolecules ,Hydrogen bond ,Chemistry ,General Chemical Engineering ,General Chemistry ,Electronic structure ,Article ,Ion ,Dication ,Crystallography ,chemistry.chemical_compound ,Ionic liquid ,Physics::Atomic and Molecular Clusters ,Density functional theory ,Physics::Chemical Physics ,Imide ,Conformational isomerism ,QD1-999 - Abstract
A manifestation of hydrogen bonding between the dication and anions attributed to their relative position of the anions around the cation can influence both the conformational equilibrium and the physical properties of ionic liquids. With this view, we studied the electronic structure and normal frequencies using density functional theory calculations to analyze the hydrogen-bonding interactions in dicationic ionic liquids. The conformers are distinguished based on the hydrogen-bonding sites of the cation and anion. The weak hydrogen bonding between the dication and anions in dication ionic liquids can lead to greater conformational equilibrium compared to the monocation system. Consequences of these interactions for the vibrational spectrum are analyzed to provide an insight into the conformational equilibrium in dicationic ionic liquids at the molecular level.
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- 2021
6. Hypothermic storage of sturgeon sperm: methodology and ongoing history
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Dmitry Isaev
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0303 health sciences ,03 medical and health sciences ,030219 obstetrics & reproductive medicine ,0302 clinical medicine ,Sturgeon ,Zoology ,General Medicine ,Biology ,Sperm ,030304 developmental biology - Abstract
Hypothermic storage of sperm in a liquid state without freezing, without the use of either liquid nitrogen or dry ice as well as special cryological equipment is an interesting and attractive research line in reproductive biology in terms of practical application. Historically, hypothermia is the very first approach to the preservation of genetic material, but, despite this, the methods of hypothermic storage of gametes and embryos have not received proper development and application in animal husbandry, giving way to cryopreservation. One of the main reasons for this is the high species-specific resistance to cold storage. The technologies for hypothermic storage of sperm existing today and recommended for use in fish farming and in sturgeon breeding in particular are still not effective enough and require further improvement. This short review outlines the history of the development of technologies for the hypothermic storage of sturgeon sperm, considers a number of methodological approaches, concepts and ideas behind these developments. The male reproductive system in sturgeons, the structure and physiology of spermatozoa have a number of features that distance them from teleost fishes, but partly relate to amphibians and higher vertebrates. This made it possible to apply to sturgeons some successful approaches and achievements in the development of methods for hypothermic storage of mammalian (mouse and human) sperm. Thus, the most effective and possibly promising approach is partial or complete replacement of seminal plasma with salt-free isotonic solutions based on sugars (oligosaccharides) and albumin. The purpose of this review is to draw the attention of fish farmers and researchers to developments and advances in hypothermic sperm storage.
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- 2020
7. Mapping Subcortical Brain Alterations in 22q11.2 Deletion Syndrome
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Therese van Amelsvoort, Eva W.C. Chow, Marianne Bernadette van den Bree, Paul M. Thompson, Wendy R. Kates, Jacob A. S. Vorstman, Nancy J. Butcher, Julio E Villalon Reina, Clodagh M. Murphy, Eileen Daly, Ania Fiksinski, Donna M. McDonald-McGinn, Raquel E. Gur, Wanda Fremont, David Edmund Johannes Linden, Daqiang Sun, Courtney A. Durdle, Rachel K. Jonas, Hayley Moss, Kosha Ruparel, Tony J. Simon, Nicolas Crossley, J. Eric Schmitt, David R. Roalf, Michael John Owen, Kevin M. Antshel, Sanne Koops, Linda E. Campbell, Beverly S. Emanuel, Anjanibhargavi Ragothaman, Maria Jalbrzikowski, Amy Lin, Kieran C. Murphy, Maria Gudbrandsen, Anne S. Bassett, Ariana Vajdi, T. Blaine Crowley, Dmitry Isaev, Joanne L. Doherty, Boris A. Gutman, Carrie E. Bearden, Kathryn McCabe, Naomi J. Goodrich-Hunsaker, Fidel Vila-Rodriguez, Laura Pacheco-Hansen, Artemis Zavaliangos-Petropulu, Christopher R.K. Ching, Elaine H. Zackai, Geor Bakker, Jennifer K. Forsyth, Adam C. Cunningham, Gabriela M. Repetto, Leila Kushan, Declan G. Murphy, Michael C. Craig, RS: MHeNs - R2 - Mental Health, Psychiatrie & Neuropsychologie, and MUMC+: MA Med Staf Spec Psychiatrie (9)
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Male ,Neurodevelopment ,Physiology ,CHILDREN ,Copy Number Variant ,Brain mapping ,Medical and Health Sciences ,0302 clinical medicine ,2.1 Biological and endogenous factors ,Aetiology ,Child ,Psychiatry ,Brain Mapping ,Putamen ,Mental Disorders ,Brain ,MOUSE MODEL ,Middle Aged ,Serious Mental Illness ,Magnetic Resonance Imaging ,Psychiatry and Mental health ,medicine.anatomical_structure ,Mental Health ,Schizophrenia ,Major depressive disorder ,Female ,BEHAVIOR ,Adult ,Psychosis ,SCHIZOPHRENIA SPECTRUM ,CORTEX ,Adolescent ,DISORDERS ,Clinical Trials and Supportive Activities ,Amygdala ,Article ,03 medical and health sciences ,Young Adult ,Neuroimaging ,Clinical Research ,22q11.2 Deletion Syndrome ,medicine ,DiGeorge Syndrome ,Humans ,Bipolar disorder ,DOSAGE ,business.industry ,Psychology and Cognitive Sciences ,Neurosciences ,Hypertrophy ,medicine.disease ,030227 psychiatry ,Brain Disorders ,Neuroanatomy ,Psychotic Disorders ,MORPHOMETRY ,Case-Control Studies ,VOLUME ,Atrophy ,business ,030217 neurology & neurosurgery - Abstract
Objective: 22q11.2 deletion syndrome (22q11DS) is among the strongest known genetic risk factors for schizophrenia. Previous studies have reported variable alterations in subcortical brain structures in 22q11DS. To better characterize subcortical alterations in 22q11DS, including modulating effects of clinical and genetic heterogeneity, the authors studied a large multicenter neuroimaging cohort from the ENIGMA 22q11.2 Deletion Syndrome Working Group. Methods: Subcortical structures were measured using harmonized protocols for gross volume and subcortical shape morphometry in 533 individualswith 22q11DS and 330matched healthy control subjects (age range, 6-56 years; 49% female). Results: Compared with the control group, the 22q11DS group showed lower intracranial volume (ICV) and thalamus, putamen, hippocampus, and amygdala volumes and greater lateral ventricle, caudate, and accumbens volumes (Cohen's d values, 20.90 to 0.93). Shape analysis revealed complex differences in the 22q11DS group across all structures. The larger A-D deletion was associated with more extensive shape alterations compared with the smaller A-B deletion. Participants with 22q11DS with psychosis showed lower ICV and hippocampus, amygdala, and thalamus volumes (Cohen's d values, 20.91 to 0.53) compared with participants with 22q11DS without psychosis. Shape analysis revealed lower thickness and surface area across subregions of these structures. Compared with subcortical findings from other neuropsychiatric disorders studied by the ENIGMA consortium, significant convergence was observed between participants with 22q11DS with psychosis and participants with schizophrenia, bipolar disorder, major depressive disorder, and obsessive-compulsive disorder. Conclusions: In the largest neuroimaging study of 22q11DS to date, the authors found widespread alterations to subcortical brain structures, which were affected by deletion size and psychotic illness. Findings indicate significant overlap between 22q11DS-associated psychosis, idiopathic schizophrenia, and other severe neuropsychiatric illnesses.
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- 2020
8. A meta-analysis of deep brain structural shape and asymmetry abnormalities in 2,833 individuals with schizophrenia compared with 3,929 healthy volunteers via the ENIGMA Consortium
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Jacqueline Mayoral-van Son, Dana Nguyen, Esther Walton, Vince D. Calhoun, Boris A. Gutman, Pedro G.P. Rosa, Geraldo Busatto Filho, Adrian Preda, Margie Wright, Esther Setién-Suero, Bryon A. Mueller, Fleur M. Howells, Daniel H. Mathalon, Arvin Saremi, Fabrizio Piras, Salvador Sarró, Gianfranco Spalletta, Katie L. McMahon, Judith M. Ford, Lawrence Faziola, Juan R. Bustillo, Fabienne Schönborn-Harrisberger, Alexander J. Huang, Erin W. Dickie, Simon Cervenka, Lei Wang, Shan Cong, Theodore D. Satterthwaite, Anthony A. James, Edith Pomarol-Clotet, Steven G. Potkin, Erick J. Canales-Rodríguez, Kaleda Vg, Dara M. Cannon, Lars T. Westlye, Aiden Corvin, Andrea Weideman, Mauricio H. Serpa, Ole A. Andreassen, Dmitry Isaev, Giuseppe Ducci, Neda Jahanshad, Colm McDonald, Helena Fatouros-Bergman, Theo G.M. van Erp, John G. Csernansky, Dag Alnæs, Kathryn I. Alpert, Laurena Holleran, Li Shen, Dan J. Stein, Peter Kochunov, Raymond Salvador, Artemis Zavaliangos-Petropulu, Nerisa Banaj, Timothy J. Crow, Paola Fuentes-Claramonte, Federica Piras, Jessica A. Turner, Derin Cobia, Christopher R.K. Ching, Derek W. Morris, Paul M. Thompson, Nhat Trung Doan, Diana Tordesillas-Gutiérrez, Benedicto Crespo-Facorro, Alexander Tomyshev, Daniel H. Wolf, Stefan Ehrlich, Ingrid Agartz, Gary Donohoe, Greig I. de Zubicaray, Henk Temmingh, Anne Uhlmann, Stefan Borgwardt, Anjani Ragothaman, Michael Gill, David C. Glahn, Aristotle N. Voineskos, Irina V. Lebedeva, Marcus V. Zanetti, Joaquim Radua, Carl M. Sellgren, Charles Kessler, US Department of Veterans Affairs, Conselho Nacional de Desenvolvimento Científico e Tecnológico (Brasil), Swedish Research Council for Health, Working Life and Welfare, Fundação Amazônia de Amparo a Estudos e Pesquisas, Instituto de Salud Carlos III, National Health and Medical Research Council (Australia), National Institutes of Health (US), National Science Foundation (US), Research Council of Norway, Science Foundation Ireland, and Wellcome Trust
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Thalamus ,Hippocampus ,Neuroimaging ,Amygdala ,03 medical and health sciences ,0302 clinical medicine ,Healthy volunteers ,medicine ,Humans ,Multicenter Studies as Topic ,Radiology, Nuclear Medicine and imaging ,structure ,Research Articles ,Radiological and Ultrasound Technology ,business.industry ,Putamen ,Ventral striatum ,Neurosciences ,1. No poverty ,Experimental Psychology ,subcortical shape ,medicine.disease ,Corpus Striatum ,Brain Disorders ,030227 psychiatry ,3. Good health ,schizophrenia ,Mental Health ,Good Health and Well Being ,medicine.anatomical_structure ,Neurology ,nervous system ,Schizophrenia ,Meta-analysis ,Cognitive Sciences ,Neurology (clinical) ,Anatomy ,business ,Neuroscience ,030217 neurology & neurosurgery ,Research Article - Abstract
Special Issue: The ENIGMA Consortium: the first 10 years., Schizophrenia is associated with widespread alterations in subcortical brain structure. While analytic methods have enabled more detailed morphometric characterization, findings are often equivocal. In this meta-analysis, we employed the harmonized ENIGMA shape analysis protocols to collaboratively investigate subcortical brain structure shape differences between individuals with schizophrenia and healthy control participants. The study analyzed data from 2,833 individuals with schizophrenia and 3,929 healthy control participants contributed by 21 worldwide research groups participating in the ENIGMA Schizophrenia Working Group. Harmonized shape analysis protocols were applied to each site's data independently for bilateral hippocampus, amygdala, caudate, accumbens, putamen, pallidum, and thalamus obtained from T1-weighted structural MRI scans. Mass univariate meta-analyses revealed more-concave-than-convex shape differences in the hippocampus, amygdala, accumbens, and thalamus in individuals with schizophrenia compared with control participants, more-convex-than-concave shape differences in the putamen and pallidum, and both concave and convex shape differences in the caudate. Patterns of exaggerated asymmetry were observed across the hippocampus, amygdala, and thalamus in individuals with schizophrenia compared to control participants, while diminished asymmetry encompassed ventral striatum and ventral and dorsal thalamus. Our analyses also revealed that higher chlorpromazine dose equivalents and increased positive symptom levels were associated with patterns of contiguous convex shape differences across multiple subcortical structures. Findings from our shape meta-analysis suggest that common neurobiological mechanisms may contribute to gray matter reduction across multiple subcortical regions, thus enhancing our understanding of the nature of network disorganization in schizophrenia., Center for Integrated Healthcare, U.S. Department of Veterans Affairs, Grant/Award Number: I01 CX000497; Commonwealth Health Research Board, Grant/Award Number: HRA_POR/2011/100; Conselho Nacional de Desenvolvimento Científico e Tecnológico, Grant/Award Numbers: 478466/2009, 480370/2009; Department of Energy, Labor and Economic Growth, Grant/Award Number: DE-FG02-99ER62764; Forskningsrådet om Hälsa, Arbetsliv och Välfärd, Grant/Award Numbers: K2009-62X-15077-06-3, K2012-61X-15077-09-3, 523-2014-3467, 2009-7053, 2013-2838; Fundação Amazônia Paraense de Amparo à Pesquisa, Grant/Award Numbers: 2009/14891-9, 2010/18672-7, 2012/23796-2, 2013/039; Instituto de Salud Carlos III, Grant/Award Numbers: FIS 00/3095, 01/3129, PI020499, PI060507, PI10/001; National Health and Medical Research Council, Grant/Award Numbers: 1009064, 496682; National Institutes of Health, Grant/Award Numbers: 1RC1MH089257, MH 60722, MH019112, MH064045, MH085096, MH098130, MO1 RR025758, P41RR14075, P50 MH071616, R01 DA053028, R01 EB020062, R01 HD050735, R01 MH056584, R01 MH084803, R01 MH116147, R01 MH117601, R01EB005846, R01EB015611, R01MH074797, R21 MH097196, R21MH097196, R37MH43375, S10 OD023696, T32 AG058507, T32 MH073526, TR000153, U01 MH097435, U24 RR021382A, U24 RR021992, U24 RR025736, U24 RR21992, U24RR021992, U54 EB020403, U54EB020403, UL1 TR000153; National Science Foundation, Grant/Award Numbers: 1636893, 1734853; Norges Forskningsråd, Grant/Award Numbers: 213837, 217776, 223273; Science Foundation Ireland, Grant/Award Numbers: 08/IN.1/B1916, 12/IP/1359; Wellcome Trust, Grant/Award Number: 072894/2/03/Z.
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- 2022
9. Principles of managing development of EPM systems
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Alexey A. Druzhaev, Dmitry Isaev, and Eugene V. Ogurechnikov
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Process management ,Development (topology) ,Performance management ,Computer science ,Information system ,General Medicine ,Management principles - Published
- 2019
10. A systems-level analysis highlights microglial activation as a modifying factor in common epilepsies
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Daniele Tolomeo, Chantal Depondt, Teresa Ravizza, Reetta Kälviäinen, Jose C. Pariente, Renzo Guerrini, Jan Wagner, Guohao Zhang, Paul M. Thompson, Niels K. Focke, Pia Auvinen, Christopher D. Whelan, Derrek P. Hibar, Philippe David, Magdalena A. Kowalczyk, Neda Bernasconi, Matteo Lenge, Martin Domin, Rhys H. Thomas, Edoardo Micotti, Shuai Chen, Peter Kochunov, Felix von Podewils, Domenico Tortora, Antonio Gambardella, Manuela Tondelli, Andrea Cherubini, Costin Leu, Simon S. Keller, Wendy Franca, Stefano Meletti, Andrea Bernasconi, Pasquale Striano, Rossella Di Sapia, Andreja Avbersek, Thomas Thesen, Khalid Hamandi, Luis Concha, Mario Mascalchi, Clarissa L. Yasuda, Neda Jahanshad, Patrick Kwan, Min Liu, Marcia Morita-Sherman, Alyma Somani, Mina Ryten, Dmitry Isaev, Gabriele Ruffolo, Ruben Kuzniecky, Chad Carlson, Anna Calvo, Angelo Labate, Colin P. Doherty, Mark P. Richardson, Milica Cerovic, Raviteja Kotikalapudi, Sonya Foley, Felipe P. G. Bergo, Barbara Braga, Julie Absil, Graeme D. Jackson, Sarah J. A. Carr, Boris C. Bernhardt, Núria Bargalló, Roland Wiest, Mira Semmelroch, Carrie R. McDonald, Martina Di Nunzio, Anna Elisabetta Vaudano, Raúl Rodríguez-Cruces, Mariasavina Severino, Marina K. M. Alvim, Taavi Saavalainen, Gianpiero L. Cavalleri, Eleonora Palma, Regina H. Reynolds, Pascal Martin, Christian Rummel, Andre Altmann, Tauana Bernardes, Fernando Cendes, Annamaria Vezzani, Soenke Langner, Norman Delanty, Sanjay M. Sisodiya, Karen Blackmon, Valentina Iori, Terence J. O'Brien, Orrin Devinsky, Maria Eugenia Caligiuri, Jian Chen, Bernd Weber, Junsong Zhang, Emanuele Bartolini, Marco Bacigaluppi, Benjamin Bender, Maria Thom, Lucy Vivash, Juan A. Botía, and Saud Alhusaini
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Histology ,cortical thinning ,610 Medicine & health ,Biology ,Article ,Pathology and Forensic Medicine ,03 medical and health sciences ,Epilepsy ,GABA ,Mice ,0302 clinical medicine ,Neuroimaging ,Seizures ,Physiology (medical) ,Gene expression ,medicine ,Animals ,Neuroinflammation ,030304 developmental biology ,post mortem ,Temporal cortex ,0303 health sciences ,Microglia ,epilepsy ,gene expression ,Brain ,Endothelial Cells ,Human brain ,Acquired immune system ,medicine.disease ,medicine.anatomical_structure ,Neurology ,MRI ,Neurology (clinical) ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Aims\ud The causes of distinct patterns of reduced cortical thickness in the common human epilepsies, detectable on neuroimaging and with important clinical consequences, are unknown. We investigated the underlying mechanisms of cortical thinning using a systems-level analysis.\ud \ud Methods\ud Imaging-based cortical structural maps from a large-scale epilepsy neuroimaging study were overlaid with highly spatially resolved human brain gene expression data from the Allen Human Brain Atlas. Cell-type deconvolution, differential expression analysis and cell-type enrichment analyses were used to identify differences in cell-type distribution. These differences were followed up in post-mortem brain tissue from humans with epilepsy using Iba1 immunolabelling. Furthermore, to investigate a causal effect in cortical thinning, cell-type-specific depletion was used in a murine model of acquired epilepsy.\ud \ud Results\ud We identified elevated fractions of microglia and endothelial cells in regions of reduced cortical thickness. Differentially expressed genes showed enrichment for microglial markers and, in particular, activated microglial states. Analysis of post-mortem brain tissue from humans with epilepsy confirmed excess activated microglia. In the murine model, transient depletion of activated microglia during the early phase of the disease development prevented cortical thinning and neuronal cell loss in the temporal cortex. Although the development of chronic seizures was unaffected, the epileptic mice with early depletion of activated microglia did not develop deficits in a non-spatial memory test seen in epileptic mice not depleted of microglia.\ud \ud Conclusions\ud These convergent data strongly implicate activated microglia in cortical thinning, representing a new dimension for concern and disease modification in the epilepsies, potentially distinct from seizure control.
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- 2021
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11. Relative Average Look Duration and its Association with Neurophysiological Activity in Young Children with Autism Spectrum Disorder
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Samantha Major, David E. Carlson, Geraldine Dawson, Guillermo Sapiro, Dmitry Isaev, Michael Murias, and Kimberly L. H. Carpenter
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Male ,0301 basic medicine ,medicine.medical_specialty ,Time Factors ,Autism Spectrum Disorder ,Brain activity and meditation ,lcsh:Medicine ,Audiology ,Electroencephalography ,Article ,03 medical and health sciences ,0302 clinical medicine ,mental disorders ,medicine ,Humans ,Attention ,Child ,Social Behavior ,lcsh:Science ,Association (psychology) ,Neurologic Examination ,Multidisciplinary ,Social communication ,medicine.diagnostic_test ,lcsh:R ,Brain ,Diagnostic markers ,Autism spectrum disorders ,Neurophysiology ,medicine.disease ,Preference ,030104 developmental biology ,Duration (music) ,Autism spectrum disorder ,Child, Preschool ,Feasibility Studies ,Female ,lcsh:Q ,Psychology ,030217 neurology & neurosurgery - Abstract
Autism Spectrum Disorder (ASD) is characterized by early attentional differences that often precede the hallmark symptoms of social communication impairments. Development of novel measures of attentional behaviors may lead to earlier identification of children at risk for ASD. In this work, we first introduce a behavioral measure, Relative Average Look Duration (RALD), indicating attentional preference to different stimuli, such as social versus nonsocial stimuli; and then study its association with neurophysiological activity. We show that (1) ASD and typically developing (TD) children differ in both (absolute) Average Look Duration (ALD) and RALD to stimuli during an EEG experiment, with the most pronounced differences in looking at social stimuli; and (2) associations between looking behaviors and neurophysiological activity, as measured by EEG, are different for children with ASD versus TD. Even when ASD children show attentional engagement to social content, our results suggest that their underlying brain activity is different than TD children. This study therefore introduces a new measure of social/nonsocial attentional preference in ASD and demonstrates the value of incorporating attentional variables measured simultaneously with EEG into the analysis pipeline.
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- 2020
12. A Biomechanical Analysis of Various Push-Up Positions Based on Hand Width
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Jacob Hatfield, Emelly Rodriguez, Esteban Aguilar-Ramirez, and Dmitry Isaev
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Applied Mathematics ,General Mathematics - Abstract
This study analyzed the biomechanical difference of three different push-up hand width positions: narrow, normal, and wide. A Qualisys (Göteborg, Sweden) motion capture system and in-floor AMTI (Watertown, MA, USA) force plates were used to record participants’ movements. The movement data was transferred to MATLAB and used to find the elbow flexion angle, shoulder dip ankle, spine angle, and ground reaction force (GRF) of each participant, and to make comparisons between the three push-up variations. Statistical analysis suggested that there was a statistically significant difference between push-up variants with respect to elbow flexion angle, spine angle, and shoulder dip angle, but the difference in GRF between variants was not found to be statistically significant. Measuring these factors provided insight into typical push-up posture for both men and women.
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- 2020
13. Evaluation of genetic polymorphism of proteins in stellate sturgeon Acipenser stellatus (Pall) in aquaculture with reference to economically valuable traits
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Elena Shishanova, Grigory Shishanov, and Dmitry Isaev
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One of the main goals of sturgeon aquaculture is the restoration and renewal of wild populations of sturgeon fish in nature, which creates a tension between selective breeding with maintenance of valuable economic traits in a homozygous state and the need to conserve genetic diversity ensuring fitness in natural environments. It is generally assumed that important economic characteristics, such as body weight and size, growth rate, fecundity, etc., as well as fitness in fish, are associated with heterozygosity and genetic polymorphism of some key metabolic enzymes. It remains unclear whether aquaculture conditions can be as a whole selection factor in favor of certain allelic variants of these enzymes. To establish the relationship between some economic traits and enzymatic polymorphism, we studied the distribution of allelic variants of LDH-3, AAT-2, FGM, and Est enzymes in stellate sturgeon reared in aquaculture. We revealed a frequency bias of some allelic variants of the studied enzymes in a cohort of fish from the generation bred in aquaculture compared to the frequencies of those alleles in wild natural populations. Our study suggests that industrial breeding promotes selection in the direction of reducing size but increasing survival rates, which correlates with certain allelic variants.
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- 2021
14. Decision making using a combination of management accounting and an expert approach
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Dmitry Isaev
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Capital budgeting ,Business analytics ,Scope (project management) ,Process (engineering) ,Management science ,Accounting management ,Management accounting ,Economics ,Cost accounting ,Analytic hierarchy process ,General Medicine - Abstract
Dmitry V. Isaev - Associate Professor, Department of Business Analytics, National Research University Higher School of EconomicsAddress: 20, Myasnitskaya Street, Moscow, 101000, Russian FederationE-mail: disaev@hse.ru This paper focuses on the questions of combining management accounting and an expert approach for decision making in the sphere of economics and management. The background of such a combination is that within both approaches there are a decision making goal, a set of alternatives and criteria for their assessment, as well as the possibility of multivariate evaluation of the alternatives for different possible situations. The basic decision making processes provide similar data processing. Their scope relies on classification of assessment criteria into three types: quantitative criteria, for which source information for management accounting is available, quantitative criteria with lack of source information for management accounting, and qualitative criteria, for which management accounting methods are not applicable. Relying on such classification, four basic processes are defined: pure management accounting, management accounting supplemented by estimates according to predefined rules, management accounting supplemented by expert estimates, and the pure expert approach. Relying on different basic processes, fifteen working processes (including the generalized working process including all four basic processes) are defined. Conclusions are made regarding the practical applicability of different working processes, depending on the scope of decision making criteria. Approval of the combined approach is performed with the help of an example of investment appraisal relating to a manufacturing company’s development, using three classic management accounting criteria (payback period, net present value, internal rate of return), and three criteria of a qualitative nature.
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- 2016
15. Diffusion-tensor imaging of major white matter tracts and their role in language processing in aphasia
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Alexey G. Petrushevskiy, Nina F. Dronkers, Dmitry Isaev, Victor M. Shklovsky, Olga Dragoy, Yulia Akinina, Maria Ivanova, and Oksana N. Fedina
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Male ,MIDDLE LONGITUDINAL FASCICLE ,DT-MRI ,Audiology ,CHRONIC STROKE PATIENTS ,Corpus Callosum ,Developmental psychology ,SPEECH PRODUCTION ,Primary progressive aphasia ,BRAIN IMAGES ,0302 clinical medicine ,Neural Pathways ,Arcuate fasciculus ,MRI-DTI ,IN-VIVO ,Language ,biology ,05 social sciences ,Superior longitudinal fasciculus ,White matter ,Middle Aged ,Stroke ,Diffusion Tensor Imaging ,Neuropsychology and Physiological Psychology ,medicine.anatomical_structure ,Female ,medicine.symptom ,Psychology ,LEFT ARCUATE FASCICULUS ,Adult ,medicine.medical_specialty ,AGE-RELATED DIFFERENCES ,Cognitive Neuroscience ,Uncinate fasciculus ,Experimental and Cognitive Psychology ,behavioral disciplines and activities ,PRIMARY PROGRESSIVE APHASIA ,050105 experimental psychology ,Lateralization of brain function ,03 medical and health sciences ,Aphasia ,Fasciculus ,medicine ,Humans ,0501 psychology and cognitive sciences ,Inferior longitudinal fasciculus ,PARIETAL LOBULE ,Cerebrum ,Aged ,biology.organism_classification ,medicine.disease ,Anisotropy ,030217 neurology & neurosurgery - Abstract
A growing literature is pointing towards the importance of white matter, tracts in understanding the neural mechanisms of language processing, and determining the nature of language deficits and recovery patterns in aphasia. Measurements extracted from diffusion-weighted (DW) images provide comprehensive in vivo measures of local micro structural properties of fiber pathways. In the current study, we compared microstructural properties of major white matter tracts implicated in language processing in each hemisphere (these included arcuate fasciculus (AF), superior longitudinal fasciculus (SLF), inferior longitudinal fasciculus (ILF), inferior frontal-occipital fasciculus (IFOF), uncinate fasciculus (UF), and corpus callosum (CC), and corticospinal tract (CST) for control purposes) between individuals with aphasia and healthy controls and investigated the relationship between these neural indices and language deficits.Thirty-seven individuals with aphasia due to left hemisphere stroke and eleven age matched controls were scanned using DW imaging sequences. Fractional anisotropy (FA), mean diffusivity (MD), radial diffusivity (RD), axial diffusivity (AD) values for each major white matter tract were extracted from DW images using tract masks chosen from standardized atlases. Individuals with aphasia were also assessed with a standardized language test in Russian targeting comprehension and production at the word and sentence level.Individuals with aphasia had significantly lower FA values for left hemisphere tracts and significantly higher values of MD, RD and AD for both left and right hemisphere tracts compared to controls, all indicating profound impairment in tract integrity. Language comprehension was predominantly related to integrity of the left IFOF and left ILF, while language production was mainly related to integrity of the left AF. In addition, individual segments of these three tracts were differentially associated with language production and comprehension in aphasia. Our findings highlight the importance of fiber pathways in supporting different language functions and point to the importance of temporal tracts in language processing, in particular, comprehension. (C) 2016 Elsevier Ltd. All rights reserved.
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- 2016
16. White matter disturbances in major depressive disorder: a coordinated analysis across 20 international cohorts in the ENIGMA MDD working group
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Marie-José van Tol, Angela Carballedo, Lianne Schmaal, Matthew D. Sacchet, Bernhard T. Baune, Dick J. Veltman, Meng Li, Brenda W.J.H. Penninx, Ivan V. Brak, Emma L. Hawkins, Nicholas G. Martin, Maria J. Portella, Annerine Roos, Sean N. Hatton, Andreas Jansen, Neda Jahanshad, Quinn McLellan, Alyssa H. Zhu, Udo Dannlowski, Ilya M. Veer, Jonathan Repple, Leonardo Tozzi, Yolanda Vives-Gilabert, Knut Schnell, Bonnie Klimes-Dougan, Lyubomir I. Aftanas, Axel Krug, Ian B. Hickie, Martin Walter, Margaret J. Wright, Igor Nenadic, Jim Lagopoulos, Susanne Meinert, Verena Enneking, Steven J.A. van der Werff, Katharina Förster, Dan J. Stein, Melinda Westlund Schreiner, Colm G. Connolly, Kang Sim, Thomas Frodl, Andrew M. McIntosh, Robert Vermeiren, Laura S van Velzen, Peter Kochunov, Alexander Tomyshev, Tristram A. Lett, Baptiste Couvy-Duchesne, Ian H. Gotlib, Heather C. Whalley, André Aleman, Sinead Kelly, Dmitry Isaev, Konstantin V. Danilenko, Xueyi Shen, Nic J.A. van der Wee, Tilo Kircher, Frank P. MacMaster, Nynke A. Groenewold, Renick Lee, Tony T. Yang, Henrik Walter, Dominik Grotegerd, Philipp G. Sämann, Elena Filimonova, Evgeny Osipov, Mathew A. Harris, Kathryn R. Cullen, Paul M. Thompson, Tiffany C. Ho, Jochen Bauer, Lee Kong Chian School of Medicine (LKCMedicine), Psychiatry, Amsterdam Neuroscience - Mood, Anxiety, Psychosis, Stress & Sleep, APH - Mental Health, Amsterdam Reproduction & Development (AR&D), Anatomy and neurosciences, APH - Digital Health, Perceptual and Cognitive Neuroscience (PCN), Interdisciplinary Centre Psychopathology and Emotion regulation (ICPE), Clinical Neuropsychology, and Clinical Cognitive Neuropsychiatry Research Program (CCNP)
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Male ,0301 basic medicine ,FRACTIONAL ANISOTROPY ,PREFRONTAL CORTEX ,Corpus callosum ,Corpus Callosum ,Cohort Studies ,0302 clinical medicine ,SCHIZOPHRENIA ,ANTERIOR CORONA RADIATA ,Depression (differential diagnoses) ,Aged, 80 and over ,ABNORMALITIES ,Depression ,Middle Aged ,HUMAN BRAIN ,White Matter ,DIFFUSION ,INTEGRITY ,Psychiatry and Mental health ,Diffusion Tensor Imaging ,medicine.anatomical_structure ,Schizophrenia ,Major depressive disorder ,Female ,Clinical psychology ,Adult ,MOOD DISORDERS ,behavioral disciplines and activities ,Article ,White matter ,Young Adult ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Fractional anisotropy ,mental disorders ,medicine ,Humans ,Medicine [Science] ,ddc:610 ,Molecular Biology ,METAANALYSIS ,Aged ,Depressive Disorder, Major ,business.industry ,medicine.disease ,030104 developmental biology ,Mood disorders ,Anisotropy ,business ,030217 neurology & neurosurgery ,Diffusion MRI ,Neuroscience - Abstract
Altres ajuts: The ENIGMA-Major Depressive Disorder working group gratefully acknowledges support from the NIH Big Data to Knowledge (BD2K) award (U54 EB020403 to PMT) and NIH grant R01 MH116147 (PMT). LS is supported by an NHMRC MRFF Career Development Fellowship (APP1140764). We wish to acknowledge the patients and control subjects that have particiaped int the study. We thank Rosa Schirmer, Elke Schreiter, Reinhold Borschke and Ines Eidner for image acquisition and data preparation, and Anna Oliynyk for quality checks. We thank Dorothee P. Auer and F. Holsboer for initiation of the RUD study. We wish to acknowledge the patients and control subjects that have particiaped int the study. We thank Rosa Schirmer, Elke Schreiter, Reinhold Borschke and Ines Eidner for image acquisition and data preparation, and Anna Oliynyk for quality checks. We thank Dorothee P. Auer and F. Holsboer for initiation of the RUD study. NESDA: The infrastructure for the NESDA study (www.nesda.nl) is funded through the Geestkracht program of the Netherlands Organisation for Health Research and Development (Zon-Mw, grant number 10-000-1002) and is supported by participating universities (VU University Medical Center, GGZ inGeest, Arkin, Leiden University Medical Center, GGZ Rivierduinen, University Medical Center Groningen) and mental health care organizations, see www.nesda.nl. M-JvT was supported by a VENI grant (NWO grant number 016.156.077). UCSF: This work was supported by the Brain and Behavior Research Foundation (formerly NARSAD) to TTY; the National Institute of Mental Health (R01MH085734 to TTY; K01MH117442 to TCH) and by the American Foundation for Suicide Prevention (PDF-1-064-13) to TCH. Stanford: This work was supported by NIMH Grants R01MH59259 and R37101495 to IHG. MS is partially supported by an award funded by the Phyllis and Jerome Lyle Rappaport Foundation. Muenster: This work was funded by the German Research Foundation (SFB-TRR58, Projects C09 and Z02 to UD) and the Interdisciplinary Center for Clinical Research (IZKF) of the medical faculty of Münster (grant Dan3/012/17 to UD). Marburg: This work was funded by the German Research Foundation (DFG, grant FOR2107 DA1151/5-1 and DA1151/5-2 to UD; KI 588/ 14-1, KI 588/14-2 to TK; KR 3822/7-1, KR 3822/7-2 to AK; JA 1890/ 7-1, JA 1890/7-2 to AJ). IMH-MDD: This work was supported by the National Healthcare Group Research Grant (SIG/15012) awarded to KS. Barcelona: This study was funded by two grants of the Fondo de Investigación Sanitaria from the Instituto de Salud Carlos III, by the Centro de Investigación Biomédica en Red de Salud Mental (CIBERSAM). The author is funded through 'Miguel Servet' research contract (CP16-0020), co-financed by the European Regional Development Fund (ERDF) (2016-2019). QTIM: We thank the twins and singleton siblings who gave generously of their time to participate in the QTIM study. We also thank the many research assistants, radiographers, and IT support staff for data acquisition and DNA sample preparation. This study was funded by White matter disturbances in major depressive disorder: a coordinated analysis across 20 international. . . 1521 the National Institute of Child Health & Human Development (RO1 HD050735); National Institute of Biomedical Imaging and Bioengineering (Award 1U54EB020403-01, Subaward 56929223); National Health and Medical Research Council, Australia (Project Grants 496682, 1009064). NIH ENIGMA-BD2K U54 EB020403 (Thompson); R01 MH117601 (Jahanshad/Schmaal). Magdeburg: M.L. and M.W. are funded by SFB 779. Bipolar Family Study: This study has received funding from the European Community's Seventh Framework Programme (FP7/2007-2013). This paper reflects only the author's views and the European Union is not liable for any use that may be made of the information contained therein. This work was also supported by a Wellcome Trust Strategic Award (104036/Z/14/Z). Minnesota Adolescent Depression Study: The study was funded by the National Institute of Mental Health (K23MH090421), the National Alliance for Research on Schizophrenia and Depression, the University of Minnesota Graduate School, the Minnesota Medical Foundation, and the Biotechnology Research Center (P41 RR008079 to the Center for Magnetic Resonance Research), University of Minnesota, and the Deborah E. Powell Center for Women's Health Seed Grant, University of Minnesota. Dublin: This study was supported by Science Foundation Ireland through a Stokes Professorhip grant to TF. MPIP: The MPIP Sample comprises patients included in the Recurrent Unipolar Depression (RUD) Case-Control study at the clinic of the Max Planck Institute of Psychiatry, Munich, German. The RUD study was supported by GlaxoSmithKline. Alterations in white matter (WM) microstructure have been implicated in the pathophysiology of major depressive disorder (MDD). However, previous findings have been inconsistent, partially due to low statistical power and the heterogeneity of depression. In the largest multi-site study to date, we examined WM anisotropy and diffusivity in 1305 MDD patients and 1602 healthy controls (age range 12-88 years) from 20 samples worldwide, which included both adults and adolescents, within the MDD Working Group of the Enhancing Neuroimaging Genetics through Meta-Analysis (ENIGMA) consortium. Processing of diffusion tensor imaging (DTI) data and statistical analyses were harmonized across sites and effects were meta-analyzed across studies. We observed subtle, but widespread, lower fractional anisotropy (FA) in adult MDD patients compared with controls in 16 out of 25 WM tracts of interest (Cohen's d between 0.12 and 0.26). The largest differences were observed in the corpus callosum and corona radiata. Widespread higher radial diffusivity (RD) was also observed (all Cohen's d between 0.12 and 0.18). Findings appeared to be driven by patients with recurrent MDD and an adult age of onset of depression. White matter microstructural differences in a smaller sample of adolescent MDD patients and controls did not survive correction for multiple testing. In this coordinated and harmonized multisite DTI study, we showed subtle, but widespread differences in WM microstructure in adult MDD, which may suggest structural disconnectivity in MDD.
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- 2019
17. Formation of individual infological models of performance management systems
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Dmitry Isaev
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Management information systems ,Process management ,Performance management ,Business analytics ,Computer science ,Management science ,Information system ,Strategic management ,General Medicine ,Information flow (information theory) ,Associate professor ,Reference model - Abstract
Dmitry V. Isaev - Associate Professor, Department of Business Analytics, National Research University Higher School of Economics Address: 20, Myasnitskaya Street, Moscow, 101000, Russian Federation. E-mail: disaev@hse.ru The paper focuses on the questions of infological modeling of performance management systems (PMS), which represent the means of information support of strategic management and help to eliminate the gaps between strategic and operational management levels. Infological models of performance management systems include such elements as information flows, external information objects, functional blocks, functional modules, analytical functions, as well as methods, information systems and processes of management information processing. It is preferable to develop individual infological models for particular organizations relying on reference models, by individualizing them and detailed elaboration. Among the reference models, there is a basic (generic) infological model that represents the most common characteristics of all the enterprises and organizations, regardless their types and industry affiliation. The procedure of transition from the basic infological model to an individual model includes four stages. In the first stage, detailed elaboration of enlarged information flows is performed: each of the enlarged information flows is subdivided into more detailed flows, taking into consideration the peculiaritiesof a concrete organization. The detailing is provided taking into account types and sources of information, as well its affiliation with particular divisions, business segments and geographical segments. In the second stage, relationships between inputs and outputs of functional modules are discovered. Relying on such relations, preliminary (necessitating additional specification) analytical functions are established. In the third stage, the processes of collection, storage and processing of management information that are available within preliminary analytical functions are defined. Finally, in the fourth stage, the final versions of analytical functions are created by detailing and re-organization of previously defined preliminary functions. The paper also indicates the possibility of an alternative approach, where developing an individual model starts with the definition of analytical functions.
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- 2015
18. Deep Learning for Quality Control of Subcortical Brain 3D Shape Models
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Henrik Walter, Anita Richter-Rossler, Elliot Hong, Vince D. Calhoun, Pedro G.P. Rosa, Matthew D. Sacchet, Gianfranco Spalletta, Stefan Ehrlich, Ole A. Andreassen, Jair C. Soarez, Mon-Ju Wu, Martin Walter, Peter Kochunov, Aristotle Voineskos, Raymond Salvador, Kathryn I. Alpert, Dick J. Veltman, Dan J. Stein, Alexander J. Huang, Udo Dannlowski, Edith Pomarol-Clotet, Ilya M. Veer, Gary Donohoe, Steven G. Potkin, Artemis Zavaliangos-Petropolu, Stefan Borgwardt, Theodore D. Satterthwaite, Li Shen, Ruben C. Gur, Shan Cong, Andr Aleman, Erin W. Dickie, Nerisa Banaj, Simon Cervenka, Ingrid Agartz, Paola Fuentes-Claramonte, Dmitry Petrov, Jessica A. Turner, Meng Li, Fabrizio Piras, Bernhard T. Baune, Paul M. Thompson, Roberto Roiz-Santiaez, Nynke A. Groenewold, Diana Tordesillas-Gutirrez, Alexander Tomyshev, Daniela Vecchio, Mauricio H. Serpa, Nhat Trung Doan, Anthony A. James, Lei Wang, Fleur M. Howells, Geraldo F. Busatto, Lianne Schmaal, Christopher R.K. Ching, Anne Uhlmann, Theo G.M. van Erp, Irina V. Lebedeva, Marcus V. Zanetti, Boris A. Gutman, Erick J. Canales-Rodríguez, Sinead Kelly, Benson Irungu, Dmitry Isaev, Benedicto Crespo-Favorro, David C. Glahn, Joaquim Radua, Lars T. Westlye, Dominik Grotegerd, Fabienne Harrisberger, Valentina Ciullo, Esther Walton, Ian H. Gotlib, and Egor Kuznetsov
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Artificial neural network ,business.industry ,Computer science ,Deep learning ,Schizophrenia (object-oriented programming) ,Pattern recognition ,Grey matter ,medicine.disease ,Residual neural network ,medicine.anatomical_structure ,Schizophrenia ,Feature (computer vision) ,medicine ,Major depressive disorder ,Artificial intelligence ,business ,Parametric statistics - Abstract
We present several deep learning models for assessing the morphometric fidelity of deep grey matter region models extracted from brain MRI. We test three different convolutional neural net architectures (VGGNet, ResNet and Inception) over 2D maps of geometric features. Further, we present a novel geometry feature augmentation technique based on parametric spherical mapping. Finally, we present an approach for model decision visualization, allowing human raters to see the areas of subcortical shapes most likely to be deemed of failing quality by the machine. Our training data is comprised of 5200 subjects from the ENIGMA Schizophrenia MRI cohorts, and our test dataset contains 1500 subjects from the ENIGMA Major Depressive Disorder cohorts. Our final models reduce human rater time by 46-70%. ResNet outperforms VGGNet and Inception for all of our predictive tasks.
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- 2018
19. Deep Learning for Quality Control of Subcortical Brain 3D Shape Models
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Dmitry, Petrov, Gutman, Boris A., Egor, Kuznetsov, van Erp, Theo G. M., Turner, Jessica A., Lianne, Schmaal, Dick, Veltman, Lei, Wang, Kathryn, Alpert, Dmitry, Isaev, Artemis, Zavaliangos-Petropulu, Ching, Christopher R. K., Vince, Calhoun, David, Glahn, Satterthwaite, Theodore D., Ole Andreas Andreassen, Stefan, Borgwardt, Fleur, Howells, Nynke, Groenewold, Aristotle, Voineskos, Joaquim, Radua, Potkin, Steven G., Benedicto, Crespo-Facorro, Diana, Tordesillas-Gutirrez, Shen, Li, Irina, Lebedeva, Gianfranco, Spalletta, Gary, Donohoe, Peter, Kochunov, Rosa, Pedro G. P., Anthony, James, Udo, Dannlowski, Baune, Bernhard T., Andr, Aleman, Gotlib, Ian H., Henrik, Walter, Martin, Walter, Soares, Jair C., Stefan, Ehrlich, Gur, Ruben C., Trung Doan, N., Ingrid, Agartz, Westlye, Lars T., Fabienne, Harrisberger, Anita Riecher-R ossler, Anne, Uhlmann, Stein, Dan J., Dickie, Erin W., Edith, Pomarol-Clotet, Paola, Fuentes-Claramonte, Erick Jorge Canales-Rodrguez, Raymond, Salvador, Huang, Alexander J., Roberto, Roiz-Santiaez, Shan, Cong, Alexander, Tomyshev, Piras, Fabrizio, Vecchio, Daniela, Nerisa, Banaj, Ciullo, Valentina, Elliot, Hong, Geraldo, Busatto, Zanetti, Marcus V., Serpa, Mauricio H., Simon, Cervenka, Sinead, Kelly, Dominik, Grotegerd, Sacchet, Matthew D., Veer, Ilya M., Meng, Li, Mon-Ju, Wu, Benson, Irungu, Thompson, Esther Walton and Paul M., and for the ENIGMA consortium
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deep learning, subcortical shape analysis, quality checking ,deep learning ,quality checking ,subcortical shape analysis - Published
- 2018
20. Heat-resistant Binders Synthesis with Application of Alumina-containing and High-alumina Waste
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Alexey, Khlystov, primary, Vladimir, Shirokov, additional, Dmitry, Isaev, additional, and Vyacheslav, Suldin, additional
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- 2019
- Full Text
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21. Machine Learning for Large-Scale Quality Control of 3D Shape Models in Neuroimaging
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Dominik Grotegerd, Ole Andreas Andreasen, Meng Li, Jair C. Soares, Edith Pomarol-Clotet, Shih-Hua (Julie) Yu, Paul M. Thompson, Fabienne Harrisberger, Elliot Hong, Valentina Ciullo, Dan J. Stein, Henrik Walter, Raymond Salvador, Ilya M. Veer, Daniela Vecchio, David C. Glahn, Li Shen, Steven G. Potkin, Ian H. Gotlib, Gianfranco Spalletta, Sinead Kelly, Roberto Roiz-Santiañez, Artemis Zavaliangos-Petropulu, Fabrizio Piras, Martin Walter, Alexander Tomyshev, Dick J. Veltman, Christopher R.K. Ching, N. Trung Doan, Nynke A. Groenewold, Aristotle N. Voineskos, Dmitry Isaev, Erick Jotge Canales-Rodriguez, Simon Cervenka, Joaquim Radua, Mauricio H. Serpa, Matthew D. Sacchet, Fleur M. Howells, Diana Tordesillas-Gutiérrez, Gary Donohoe, Vince D. Calhoun, Alexander J. Huang, Nerisa Banaj, Paola Fuentes-Claramonte, Dmitry Petrov, André Aleman, Jessica A. Turner, Irina V. Lebedeva, Marcus V. Zanetti, Ruben C. Gur, Lei Wang, Benedicto Crespo-Facorro, Peter Kochunov, Lianne Schmaal, Kathryn I. Alpert, Udo Dannlowski, Anne Uhlmann, Anita Riecher-Rössler, Bernhardt T. Baune, Lars T. Westlye, Benson Irungu, Shan Cong, Theo G.M. van Erp, Erin W. Dickie, Anthony A. James, Geraldo F. Busatto, Boris A. Gutman, Pedro G.P. Rosa, Mon-Ju Wu, Ted Sattertwaite, Stefan Borgwardt, and Ingrid Agartz
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Computer science ,business.industry ,media_common.quotation_subject ,Machine learning ,computer.software_genre ,01 natural sciences ,Support vector machine ,010104 statistics & probability ,03 medical and health sciences ,0302 clinical medicine ,Neuroimaging ,Alternating decision tree ,Quality (business) ,Artificial intelligence ,0101 mathematics ,Scale (map) ,business ,computer ,030217 neurology & neurosurgery ,Reliability (statistics) ,media_common - Abstract
As very large studies of complex neuroimaging phenotypes become more common, human quality assessment of MRI-derived data remains one of the last major bottlenecks. Few attempts have so far been made to address this issue with machine learning. In this work, we optimize predictive models of quality for meshes representing deep brain structure shapes. We use standard vertex-wise and global shape features computed homologously across 19 cohorts and over 7500 human-rated subjects, training kernelized Support Vector Machine and Gradient Boosted Decision Trees classifiers to detect meshes of failing quality. Our models generalize across datasets and diseases, reducing human workload by 30-70%, or equivalently hundreds of human rater hours for datasets of comparable size, with recall rates approaching inter-rater reliability.
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- 2017
- Full Text
- View/download PDF
22. [P1–359]: ASSESSING INTERACTIVE EFFECTS OF ALZHEIMER's DEMENTIA SEVERITY AND PARKINSONISM ON STRIATAL MORPHOMETRY
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Paul M. Thompson, Anjani Ragothaman, Boris A. Gutman, and Dmitry Isaev
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medicine.medical_specialty ,Epidemiology ,business.industry ,Health Policy ,Parkinsonism ,medicine.disease ,Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Physical medicine and rehabilitation ,Developmental Neuroscience ,Interactive effects ,medicine ,Alzheimer s dementia ,Neurology (clinical) ,Geriatrics and Gerontology ,business - Published
- 2017
23. Fractional Anisotropy Derived from the Diffusion Tensor Distribution Function Boosts Power to Detect Alzheimer’s Disease Deficits
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Artemis Zavaliangos-Petropulu, Talia M. Nir, Alex D. Leow, Michael W. Weiner, Dmitry Isaev, Liang Zhan, Neda Jahanshad, Clifford R. Jack, Paul M. Thompson, and Julio E. Villalon-Reina
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Male ,Clinical Dementia Rating ,Population ,Hippocampus ,Article ,030218 nuclear medicine & medical imaging ,White matter ,03 medical and health sciences ,0302 clinical medicine ,Nuclear magnetic resonance ,Neuroimaging ,Alzheimer Disease ,Memory ,Fractional anisotropy ,medicine ,Image Processing, Computer-Assisted ,Humans ,Radiology, Nuclear Medicine and imaging ,Tensor ,Longitudinal Studies ,education ,Aged ,Physics ,education.field_of_study ,Brain Mapping ,Memory Disorders ,medicine.diagnostic_test ,Brain ,Reproducibility of Results ,Magnetic resonance imaging ,Middle Aged ,White Matter ,medicine.anatomical_structure ,Diffusion Magnetic Resonance Imaging ,Anisotropy ,Female ,Cognition Disorders ,030217 neurology & neurosurgery ,Diffusion MRI - Abstract
Purpose In diffusion MRI (dMRI), fractional anisotropy derived from the single-tensor model (FADTI) is the most widely used metric to characterize white matter (WM) microarchitecture, despite known limitations in regions with crossing fibers. Due to time constraints when scanning patients in clinical settings, high angular resolution diffusion imaging acquisition protocols, often used to overcome these limitations, are still rare in clinical population studies. However, the tensor distribution function (TDF) may be used to model multiple underlying fibers by representing the diffusion profile as a probabilistic mixture of tensors. Methods We compared the ability of standard FADTI and TDF-derived FA (FATDF), calculated from a range of dMRI angular resolutions (41, 30, 15, and 7 gradient directions), to profile WM deficits in 251 individuals from the Alzheimer's Disease Neuroimaging Initiative and to detect associations with 1) Alzheimer's disease diagnosis, 2) Clinical Dementia Rating scores, and 3) average hippocampal volume. Results Across angular resolutions and statistical tests, FATDF showed larger effect sizes than FADTI, particularly in regions preferentially affected by Alzheimer's disease, and was less susceptible to crossing fiber anomalies. Conclusion The TDF “corrected” form of FA may be a more sensitive and accurate alternative to the commonly used FADTI, even in clinical quality dMRI data. Magn Reson Med 78:2322–2333, 2017. © 2017 International Society for Magnetic Resonance in Medicine.
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- 2017
24. Cortical connectome registration using spherical demons
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Daniel Moyer, Joshua Faskowitz, Paul M. Thompson, Dmitry Isaev, and Boris A. Gutman
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Functional networks ,Human Connectome Project ,business.industry ,Healthy subjects ,Connectome ,Computer vision ,Cortical surface ,Artificial intelligence ,Psychology ,business ,Diffusion MRI - Abstract
We present an algorithm to align cortical surface models based on structural connectivity. We follow the continuous connectivity approach,1, 2 assigning a dense connectivity to every surface point-pair. We adapt and modify an approach for aligning low-rank functional networks based on eigenvalue decomposition of individual connectomes.3 The spherical demons framework then provides a natural setting for inter-subject connectivity alignment, enforcing a smooth, anatomically plausible correspondence, and allowing us to incorporate anatomical as well as connectivity information. We apply our algorithm to 98 diffusion MRI images in an Alzheimer's Disease study, and 731 healthy subjects from the Human Connectome Project. Our method consistently reduces connectome variability due to misalignment. Further, the approach reveals subtle disease effects on structural connectivity which are not seen when registering only cortical anatomy.
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- 2017
25. Improved clinical diffusion MRI reliability using a tensor distribution function compared to a single tensor
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Alex D. Leow, Neda Jahanshad, Liang Zhan, Julio E. Villalon-Reina, Talia M. Nir, Paul M. Thompson, and Dmitry Isaev
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White matter ,Nuclear magnetic resonance ,medicine.anatomical_structure ,Metric (mathematics) ,Fractional anisotropy ,Scalar (physics) ,medicine ,Tensor ,Anisotropy ,Corpus callosum ,Algorithm ,Mathematics ,Diffusion MRI - Abstract
Fractional anisotropy derived from the single-tensor model (FADTI) in diffusion MRI (dMRI) is the most widely used metric to characterize white matter (WM) micro-architecture in disease, despite known limitations in regions with extensive fiber crossing. Models such as the tensor distribution function (TDF), which represents the diffusion profile as a probabilistic mixture of tensors, have been proposed to reconstruct multiple underlying fibers. Although complex HARDI acquisition protocols are rare in clinical studies, the TDF and TDF-derived scalar FA metric (FATDF) have been shown to be advantageous even for data with modest angular resolution. However, further evaluation and validation of the metric are necessary. Here we compared the test-retest reliability of FATDF and FADTI in clinical quality data by computing the intra-class correlation (ICC) between dMRI scans collected 3 months apart. When FATDF and FADTI were calculated at various angular resolutions, FATDF ICC in both the corpus callosum and in a full axial slice were consistently more stable across scans, as compared to FADTI.
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- 2017
26. Widespread white matter microstructural differences in schizophrenia across 4322 individuals: results from the ENIGMA Schizophrenia DTI Working Group
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Ulrich Schall, Dominick T. Newell, Colm McDonald, Valentina Ciullo, Suresh Sundram, Neda Jahanshad, Martha E. Shenton, Daniel H. Mathalon, Jiri Horacek, Theodore D. Satterthwaite, Nhat Trung Doan, Stanley V. Catts, H. S. Temmingh, H. Yamamori, L. E. Hong, H. Guo, René S. Kahn, Dan J. Stein, Kelvin O. Lim, Jason M. Bruggemann, L. Flyckt, Randy L. Gollub, Marc L. Seal, Antonio Pereira, X. Chen, Sarah McEwen, Steven G. Potkin, Stephen M. Lawrie, Derrek P. Hibar, Masaki Fukunaga, Adrian Preda, Benedicto Crespo-Facorro, Jun Soo Kwon, P. Wan, R. W. McCarley, Patricia T. Michie, Nailin Yao, Frans Henskens, Juan R. Bustillo, Tonya White, Marek Kubicki, Tomas Melicher, Judith M. Ford, F. M. Fan, Erin W. Dickie, Rodney J. Scott, P. De Rossi, Thomas J. Whitford, Amanda E. Lyall, J. Chen, Wiepke Cahn, A. S. Corvin, David R. Roalf, Sylvain Bouix, Craig L. Hyde, Filip Spaniel, Vincent A. Magnotta, Lena K. L. Oestreich, S. Tang, Zora Kikinis, Carlos López-Jaramillo, Siren Tønnesen, Christopher D. Whelan, Z. Xie, Paul Klauser, Gaia Romana Pellicano, D. Rotenberg, Vaughan J. Carr, Thomas W. Weickert, Stefan Ehrlich, Larry J. Seidman, Clara Alloza, Claudia D. Vargas, Fleur M. Howells, Dara M. Cannon, Emma Sprooten, René C.W. Mandl, R. Roiz, Erik G. Jönsson, Bryon A. Mueller, D. Wei, Chiara Chiapponi, Kl K. Cho, J. Q. Voyvodic, J. Pineda Zapata, S. Tan, Jatin G. Vaidya, Jim Lagopoulos, K. Liu, T.G.M. van Erp, C. Knöchel, Jingjing Zhao, Rachel M. Brouwer, Andrew Zalesky, Philip R. Jansen, Ofer Pasternak, N.E.M. van Haren, V.D. Calhoun, Sinead Kelly, L. A. Jung, Ole A. Andreassen, R.E. Gur, Sara A. Paciga, Patricio O'Donnell, Dennis Velakoulis, Annerine Roos, Dmitry Isaev, F. Piras, Helena Fatouros-Bergman, Joshua Faskowitz, Ryota Hashimoto, V. Oertel-Knöchel, Diana Tordesillas-Gutiérrez, Simon McCarthy-Jones, Godfrey D. Pearlson, Covadonga M. Díaz-Caneja, Lars T. Westlye, Andrew M. McIntosh, Peter Savadjiev, Chad A. Bousman, Nerisa Banaj, P. E. Rasser, Heather C. Whalley, Hilleke E. Hulshoff Pol, David C. Glahn, Vanessa Cropley, Aristotle N. Voineskos, G. Zhang, Y. Tan, Jessica A. Turner, Celso Arango, M. Stäblein, Paul M. Thompson, Daniela Vecchio, Ian B. Hickie, Zhen Wang, Joanne Wojcik, C. Shannon Weickert, Sean N. Hatton, Raquelle I. Mesholam-Gately, Rhoshel K. Lenroot, Gianfranco Spalletta, J. X. Chen, Jean-Paul Fouche, Ingrid Agartz, Assen Jablensky, H. Xiang, Bryan J. Mowry, Michael Gill, Gary Donohoe, E. D. Goudzwaard, Ruben C. Gur, Christos Pantelis, Joost Janssen, Tiril P. Gurholt, F. Yang, Peter Kochunov, Carolyn D. Langen, Anesthesiology, Biomedical Engineering and Physics, Human Genetics, Graduate School, CCA - Imaging and biomarkers, AII - Infectious diseases, AII - Inflammatory diseases, Endocrinology, AGEM - Amsterdam Gastroenterology Endocrinology Metabolism, Ophthalmology, Radiotherapy, CCA - Cancer Treatment and Quality of Life, Radiology and Nuclear Medicine, Universidad de Cantabria, Radiology & Nuclear Medicine, Erasmus MC other, and Child and Adolescent Psychiatry / Psychology
- Subjects
Male ,Internal capsule ,corpus-callosum ,Image Processing ,anterior commissure ,Esquizofrenia ,Audiology ,Corpus callosum ,diffusion tensor imaging (DTI) ,Corpus Callosum ,spatial statistics ,Cohort Studies ,0302 clinical medicine ,Computer-Assisted ,Corpus Callosum/physiopathology ,80 and over ,Image Processing, Computer-Assisted ,internal capsule ,Aged, 80 and over ,Imagen de Difusión Tensora ,Brain ,Middle Aged ,White Matter ,3. Good health ,Diffusion Magnetic Resonance Imaging/methods ,Psychiatry and Mental health ,medicine.anatomical_structure ,Diffusion Tensor Imaging ,Schizophrenia ,white matter (WM) ,connectivity ,Original Article ,Female ,Psychology ,fractional anisotropy ,Adult ,medicine.medical_specialty ,brain ,Aged ,Brain/physiopathology ,Diffusion Tensor Imaging/methods ,Humans ,Schizophrenia/diagnostic imaging ,Schizophrenia/physiopathology ,White Matter/physiopathology ,White Matter/ultrastructure ,Young Adult ,Anterior commissure ,size ,White matter ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Corona radiata ,registration ,Fractional anisotropy ,medicine ,Journal Article ,Molecular Biology ,Sustancia Blanca ,mri ,schizophrenia ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,medicine.disease ,030227 psychiatry ,Diffusion Magnetic Resonance Imaging ,Neuroscience ,030217 neurology & neurosurgery ,Diffusion MRI - Abstract
Contains fulltext : 193179.pdf (Publisher’s version ) (Open Access) The regional distribution of white matter (WM) abnormalities in schizophrenia remains poorly understood, and reported disease effects on the brain vary widely between studies. In an effort to identify commonalities across studies, we perform what we believe is the first ever large-scale coordinated study of WM microstructural differences in schizophrenia. Our analysis consisted of 2359 healthy controls and 1963 schizophrenia patients from 29 independent international studies; we harmonized the processing and statistical analyses of diffusion tensor imaging (DTI) data across sites and meta-analyzed effects across studies. Significant reductions in fractional anisotropy (FA) in schizophrenia patients were widespread, and detected in 20 of 25 regions of interest within a WM skeleton representing all major WM fasciculi. Effect sizes varied by region, peaking at (d=0.42) for the entire WM skeleton, driven more by peripheral areas as opposed to the core WM where regions of interest were defined. The anterior corona radiata (d=0.40) and corpus callosum (d=0.39), specifically its body (d=0.39) and genu (d=0.37), showed greatest effects. Significant decreases, to lesser degrees, were observed in almost all regions analyzed. Larger effect sizes were observed for FA than diffusivity measures; significantly higher mean and radial diffusivity was observed for schizophrenia patients compared with controls. No significant effects of age at onset of schizophrenia or medication dosage were detected. As the largest coordinated analysis of WM differences in a psychiatric disorder to date, the present study provides a robust profile of widespread WM abnormalities in schizophrenia patients worldwide. Interactive three-dimensional visualization of the results is available at www.enigma-viewer.org.
- Published
- 2017
- Full Text
- View/download PDF
27. Implementation of electric drive of withdrawal-roll set in horizontal continuous casting machine for the production of small billets
- Author
-
Dmitry Isaev
- Subjects
Set (abstract data type) ,Continuous casting ,Engineering ,business.industry ,Casting (metalworking) ,Production (economics) ,Torque ,Mechanical engineering ,business ,Metallurgical industry ,Electric drive ,Manufacturing engineering - Abstract
Metallurgical industry has appreciated advantages of continuous casting machines for producing a variety of high-quality products made of steel and special alloys. Design features of horizontal continuous casting machines, makes it possible to use this type of machines on mini-plants with annual productivity lower than hundreds of thousands tons of end-products.
- Published
- 2016
28. Technological requirements to the drive of horizontal type continuous casting machine withdrawal-roll
- Author
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Oleg Osipov, Dmitry Isaev, and Alexander Borovik
- Subjects
Continuous casting ,Product mix ,Engineering ,Cross section (physics) ,business.industry ,Range (aeronautics) ,Mechanical engineering ,Control engineering ,Modular construction ,business ,Electric drive - Abstract
Technological requirements analyzed to the electric drive of pulling device for horizontal continuous casting machine with billets type of circular cross section. Modular construction system of the electric pulling device considered as a way to expand the range of produced at the facility cross sections and product mix.
- Published
- 2015
29. In vitro differentiation of human parthenogenetic stem cells into neural lineages
- Author
-
Andrey Semechkin, Tatjana Zogovic-Kapsalis, Tatiana Abramihina, Ibon Garitaonandia, Richard A West, Dmitry Isaev, Ruslan Semechkin, and Albrecht M. Müller
- Subjects
KOSR ,Male ,Embryology ,Parthenogenesis ,Biomedical Engineering ,Embryoid body ,Biology ,Epithelium ,Cell Line ,SOX2 ,Neural Stem Cells ,Neurosphere ,Humans ,Cell Lineage ,Cell Aggregation ,Genetics ,Neurons ,Stem Cells ,Cell Differentiation ,Embryonic stem cell ,Neural stem cell ,Cell biology ,Electrophysiological Phenomena ,Phenotype ,Stem cell ,Adult stem cell - Abstract
Human parthenogenetic stem cells are derived from the inner cell mass of blastocysts obtained from unfertilized oocytes that have been stimulated to develop without any participation of male gamete. As parthenogenesis does not involve the destruction of a viable human embryo, the derivation and use of human parthenogenetic stem cells does not raise the same ethical concerns as conventional embryonic stem cells. Human parthenogenetic stem cells are similar to embryonic stem cells in their proliferation and multilineage in vitro differentiation capacity. The aim of this study is to derive multipotent neural stem cells from human parthenogenetic stem cells that are stable to passaging and cryopreservation, and have the ability to further differentiate into functional neurons. Immunocytochemistry, quantitative real-time PCR, or FACS were used to confirm that the derived neural stem cells express neural markers such as NES, SOX2 and MS1. The derived neural stem cells keep uniform morphology for at least 30 passages and can be spontaneously differentiated into cells with neuron morphology that express TUBB3 and MAP2, and fire action potentials. These results suggest that parthenogenetic stem cells are a very promising and potentially unlimited source for the derivation of multipotent neural stem cells that can be used for therapeutic applications.
- Published
- 2011
30. Development of Performance Management Systems
- Author
-
Dmitry Isaev
- Subjects
Strategic planning ,Engineering ,Process management ,Development (topology) ,Performance management ,business.industry ,Systems engineering ,Information system ,Functional modeling ,business ,System dynamics - Abstract
In the paper basic principles and general approach to development of Performance Management Systems (PMSs) are discussed. It is considered that development of PMSs should rely on certain principles, each of them is described in details. Finally, a two-level managerial approach to PMS design and development planning is proposed. The top level, related with PMS in whole, is considered within the bounds of three generic stages -- functional modeling, dynamic modeling and finalizing.
- Published
- 2011
31. Information support of corporate governance and strategic management using analytical software
- Author
-
Dmitry Isaev
- Subjects
Strategic planning ,Knowledge management ,business.industry ,Corporate governance ,Strategic control ,Information system ,Strategic management ,Information governance ,Strategic information system ,Business ,Strategic financial management - Abstract
In the paper an information aspect of corporate governance and strategic management is considered. Relying on analysis of merits and limitations of current developments the concept of performance management information support system and the appropriate modeling approach are proposed. Finally, the possibilities of use of analytical information systems for corporate governance and strategic management are discussed.
- Published
- 2010
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