122 results on '"Dorne, Jean Lou C. M."'
Search Results
2. Risk assessment of uptake of trace elements through consumption of cereals: a pilot study in Yerevan, Armenia
- Author
-
Pipoyan, Davit, Stepanyan, Seda, Beglaryan, Meline, and Dorne, Jean-Lou C. M.
- Published
- 2022
- Full Text
- View/download PDF
3. Principles and framework for assessing the risk of bias for studies included in comparative quantitative environmental systematic reviews
- Author
-
Frampton, Geoff, Whaley, Paul, Bennett, Micah, Bilotta, Gary, Dorne, Jean-Lou C. M., Eales, Jacqualyn, James, Katy, Kohl, Christian, Land, Magnus, Livoreil, Barbara, Makowski, David, Muchiri, Evans, Petrokofsky, Gillian, Randall, Nicola, and Schofield, Kate
- Published
- 2022
- Full Text
- View/download PDF
4. In Silico Methods for Environmental Risk Assessment: Principles, Tiered Approaches, Applications, and Future Perspectives
- Author
-
Astuto, Maria Chiara, primary, Di Nicola, Matteo R., additional, Tarazona, José V., additional, Rortais, A., additional, Devos, Yann, additional, Liem, A. K. Djien, additional, Kass, George E. N., additional, Bastaki, Maria, additional, Schoonjans, Reinhilde, additional, Maggiore, Angelo, additional, Charles, Sandrine, additional, Ratier, Aude, additional, Lopes, Christelle, additional, Gestin, Ophelia, additional, Robinson, Tobin, additional, Williams, Antony, additional, Kramer, Nynke, additional, Carnesecchi, Edoardo, additional, and Dorne, Jean-Lou C. M., additional
- Published
- 2022
- Full Text
- View/download PDF
5. Evaluation of the ecological risk of pesticide residues from the European LUCAS Soil monitoring 2018 survey
- Author
-
Franco, Antonio, primary, Vieira, Diana, additional, Clerbaux, Laure‐Alix, additional, Orgiazzi, Alberto, additional, Labouyrie, Maeva, additional, Köninger, Julia, additional, Silva, Vera, additional, van Dam, Ruud, additional, Carnesecchi, Edoardo, additional, Dorne, Jean Lou C. M., additional, Vuaille, Jeanne, additional, Lobo Vicente, Joana, additional, and Jones, Arwyn, additional
- Published
- 2024
- Full Text
- View/download PDF
6. Retrospective Detection of Ophidiomyces ophidiicola from Snake Moults Collected in Bieszczady Mountains, Poland
- Author
-
Marini, Daniele, Szczygiel, Piotr, Kurek, Katarzyna, Di Nicola, Matteo Riccardo, Dorne, Jean-Lou C. M., Marenzoni, Maria Luisa, Rüegg, Joëlle, Bury, Stanislaw, Kiraga, Lukasz, Marini, Daniele, Szczygiel, Piotr, Kurek, Katarzyna, Di Nicola, Matteo Riccardo, Dorne, Jean-Lou C. M., Marenzoni, Maria Luisa, Rüegg, Joëlle, Bury, Stanislaw, and Kiraga, Lukasz
- Abstract
Ophidiomyces ophidiicola, the causative agent of ophidiomycosis, poses a potential threat to wild snakes worldwide. This study aimed to retrospectively investigate the prevalence of O. ophidiicola in archived snake moults collected from the San River Valley in the Bieszczady Mountains, Poland, from 2010 to 2012. Using qPCR for O. ophidiicola detection and conventional PCR for clade characterisation, we analysed 58 moults and one road-killed specimen of Zamenis longissimus and Natrix natrix. A novel combination of primers (ITS2L) was used to simultaneously confirm SYBR Green-based qPCR results and perform genotyping. O. ophidiicola has been detected from two Z. longissimus and one N. natrix specimens. The identified clade (I-B) is consistent with those found in wild snakes of eastern Europe and San River Valley, indicating that O. ophidiicola has been present in this region for at least a decade. This study underscores the value of historical samples in understanding the long-term presence of pathogens and highlights the potential role of environmental reservoirs in the persistence of O. ophidiicola. Our findings are crucial for informing conservation strategies for the endangered Aesculapian snake populations in Poland, emphasising the need for ongoing monitoring and habitat management to mitigate the potential impact of ophidiomycosis.
- Published
- 2024
- Full Text
- View/download PDF
7. Acetylcholinesterase inhibition in electric eel and human donor blood: an in vitro approach to investigate interspecies differences and human variability in toxicodynamics
- Author
-
Kasteel, Emma E. J., Nijmeijer, Sandra M., Darney, Keyvin, Lautz, Leonie S., Dorne, Jean Lou C. M., Kramer, Nynke I., and Westerink, Remco H. S.
- Published
- 2020
- Full Text
- View/download PDF
8. TKPlate 1.0: An Open‐access platform for toxicokinetic and toxicodynamic modelling of chemicals to implement new approach methodologies in chemical risk assessment
- Author
-
Dorne, Jean Lou C. M., primary, Cortiñas‐Abrahantes, José, additional, Spyropoulos, Fotis, additional, Darney, Keyvin, additional, Lautz, Leonie, additional, Louisse, Jochem, additional, Kass, George E. N., additional, Carnesecchi, Edoardo, additional, Liem, A. K. Djien, additional, Tarazona, José V., additional, Billat, Pierre‐André, additional, Beaudoin, Rémy, additional, Zeman, Florence, additional, Bodin, Cléo, additional, Smith, Anthony, additional, Nathanail, Alexis, additional, Di Nicola, Matteo R., additional, Kleiner, Juliane, additional, Terron, Andrea, additional, Parra‐Morte, Juan Manuel, additional, Verloo, Didier, additional, and Robinson, Tobin, additional
- Published
- 2023
- Full Text
- View/download PDF
9. A Guide to the Clinical Management of Vipera Snakebite in Italy.
- Author
-
Di Nicola, Matteo Riccardo, Crevani, Marta, Avella, Ignazio, Cerullo, Anna, Dorne, Jean-Lou C. M., Paolino, Giovanni, and Zattera, Caterina
- Subjects
SNAKEBITES ,SNAKE venom ,POISONOUS snakes ,POISONS ,VENOM ,VIPERIDAE ,ANTIVENINS - Abstract
The genus Vipera encompasses most species of medically significant venomous snakes of Europe, with Italy harbouring four of them. Envenomation by European vipers can result in severe consequences, but underreporting and the absence of standardised clinical protocols hinder effective snakebite management. This study provides an updated, detailed set of guidelines for the management and treatment of Vipera snakebite tailored for Italian clinicians. It includes taxonomic keys for snake identification, insights into viper venom composition, and recommendations for clinical management. Emphasis is placed on quick and reliable identification of medically relevant snake species, along with appropriate first aid measures. Criteria for antivenom administration are outlined, as well as indications on managing potential side effects. While the protocol is specific to Italy, its methodology can potentially be adapted for other European countries, depending on local resources. The promotion of comprehensive data collection and collaboration among Poison Control Centres is advocated to optimise envenomation management protocols and improve the reporting of epidemiological data concerning snakebite at the country level. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
10. Pilot survey reveals ophidiomycosis in dice snakes Natrix tessellata from Lake Garda, Italy
- Author
-
Marini, Daniele, Di Nicola, Matteo R., Crocchianti, Veronica, Notomista, Tommaso, Iversen, Daniel, Coppari, Luca, Di Criscio, Michela, Brouard, Vanessa, Dorne, Jean-Lou C. M., Rüegg, Joëlle, Marenzoni, Maria Luisa, Marini, Daniele, Di Nicola, Matteo R., Crocchianti, Veronica, Notomista, Tommaso, Iversen, Daniel, Coppari, Luca, Di Criscio, Michela, Brouard, Vanessa, Dorne, Jean-Lou C. M., Rüegg, Joëlle, and Marenzoni, Maria Luisa
- Abstract
Ophidiomycosis is an emerging infectious disease caused by the fungus Ophidiomyces ophidiicola (Oo). To date, Oo presence or associated disease condition has been recorded in wild and/or captive snakes from North America, Europe, Asia and Australia, but the data is still scarce outside the Nearctic. Although Italy is a country with a high snake biodiversity in the European panorama, and animals with clinical signs compatible with Oo infection have been documented, to date no investigations have reported the disease in the wild. Therefore, a pilot survey for the Italian territory was performed in conjunction with setting up a complete diagnostic workflow including SYBR Green-based real-time PCR assay for the detection of Oo genomic and mitochondrial DNA combined with histopathology of scale clips. Oo presence was investigated in 17 wild snake specimens from four different species. Four snakes were sampled in a targeted location where the mycosis was suspected via citizen science communications (i.e. North of the Lake Garda), whereas other ophidians were collected following opportunistic sampling. Oo genomic and mitochondrial DNA were detected and sequenced from all four Lake Garda Natrix tessellata, including three juveniles with macroscopic signs such as discolouration and skin crusts. From histopathological examination of scale clips, the three young positive individuals exhibited ulceration, inflammation and intralesional hyphae consistent with Oo infection, and two of them also showed the presence of arthroconidial tufts and solitary cylindrical arthrospores, allowing "Ophidiomycosis and Oo shedder" categorisation. For the remaining snake samples, the real-time PCR tested negative for Oo. This pilot survey permitted to localise for the first time Oo infection in free-ranging ophidians from Italy. Ophidiomycosis from Lake Garda highlights the need to increase sampling efforts in this area as well as in other northern Italian lakes to assess the occurrence of the p
- Published
- 2023
- Full Text
- View/download PDF
11. Exploring Dimensionality Reduction Techniques for Deep Learning Driven QSAR Models of Mutagenicity
- Author
-
Kalian, Alexander D., primary, Benfenati, Emilio, additional, Osborne, Olivia J., additional, Gott, David, additional, Potter, Claire, additional, Dorne, Jean-Lou C. M., additional, Guo, Miao, additional, and Hogstrand, Christer, additional
- Published
- 2023
- Full Text
- View/download PDF
12. A Computational Inter-Species Study on Safrole Phase I Metabolism-Dependent Bioactivation: A Mechanistic Insight into the Study of Possible Differences among Species
- Author
-
Pedroni, Lorenzo, primary, Louisse, Jochem, additional, Punt, Ans, additional, Dorne, Jean Lou C. M., additional, Dall’Asta, Chiara, additional, and Dellafiora, Luca, additional
- Published
- 2023
- Full Text
- View/download PDF
13. Risk Assessment of Combined Exposure to Multiple Chemicals at the European Food Safety Authority: Principles, Guidance Documents, Applications and Future Challenges
- Author
-
Cattaneo, Irene, primary, Kalian, Alexander D., additional, Di Nicola, Matteo R., additional, Dujardin, Bruno, additional, Levorato, Sara, additional, Mohimont, Luc, additional, Nathanail, Alexis V., additional, Carnessechi, Edoardo, additional, Astuto, Maria Chiara, additional, Tarazona, Jose V., additional, Kass, George E. N., additional, Liem, Antoine K. Djien, additional, Robinson, Tobin, additional, Manini, Paola, additional, Hogstrand, Christer, additional, Price, Paul S., additional, and Dorne, Jean Lou C. M., additional
- Published
- 2023
- Full Text
- View/download PDF
14. Perfluoroalkyl substances (PFASs) are substrates of the renal human organic anion transporter 4 (OAT4)
- Author
-
Louisse, Jochem, primary, Dellafiora, Luca, additional, van den Heuvel, Jeroen J. M. W., additional, Rijkers, Deborah, additional, Leenders, Liz, additional, Dorne, Jean-Lou C. M., additional, Punt, Ans, additional, Russel, Frans G. M., additional, and Koenderink, Jan B., additional
- Published
- 2022
- Full Text
- View/download PDF
15. Congeners-Specific Intestinal Absorption Of Microcystins In An In Vitro 3D Human Intestinal Epithelium: The Role Of Influx/Efflux Transporters
- Author
-
Turco, Laura, primary, Santori, Nicoletta, additional, Buratti, Franca M., additional, Dorne, Jean-Lou C. M., additional, and Testai, Emanuela, additional
- Published
- 2022
- Full Text
- View/download PDF
16. Cardiotoxicity of Chemical Substances: An Emerging Hazard Class
- Author
-
Georgiadis, Nikolaos, primary, Tsarouhas, Konstantinos, additional, Dorne, Jean-Lou C. M., additional, Kass, George E. N., additional, Laspa, Petroula, additional, Toutouzas, Konstantinos, additional, Koulaouzidou, Elisabeth A., additional, Kouretas, Dimitrios, additional, and Tsitsimpikou, Christina, additional
- Published
- 2022
- Full Text
- View/download PDF
17. Application of evidence-based methods to construct mechanism-driven chemical assessment frameworks
- Author
-
Hoffmann, Sebastian, Aiassa, Elisa, Angrish, Michelle, Beausoleil, Claire, Bois, Frederic Y, Ciccolallo, Laura, Craig, Peter S, De Vries, Rob B M, Dorne, Jean Lou C M, Druwe, Ingrid L, Edwards, Stephen W, Eskes, Chantra, Georgiadis, Marios, Hartung, Thomas, Kienzler, Aude, Kristjansson, Elisabeth A, Lam, Juleen, Martino, Laura, Meek, Bette, Morgan, Rebecca L, Munoz-Guajardo, Irene, Noyes, Pamela D, Parmelli, Elena, Piersma, Aldert, Rooney, Andrew, Sena, Emily, Sullivan, Kristie, Tarazona, José, Terron, Andrea, Thayer, Kris, Turner, Jan, Verbeek, Jos, Verloo, Didier, Vinken, Mathieu, Watford, Sean, Whaley, Paul, Wikoff, Daniele, Willett, Kate, Tsaioun, Katya, Hoffmann, Sebastian, Aiassa, Elisa, Angrish, Michelle, Beausoleil, Claire, Bois, Frederic Y, Ciccolallo, Laura, Craig, Peter S, De Vries, Rob B M, Dorne, Jean Lou C M, Druwe, Ingrid L, Edwards, Stephen W, Eskes, Chantra, Georgiadis, Marios, Hartung, Thomas, Kienzler, Aude, Kristjansson, Elisabeth A, Lam, Juleen, Martino, Laura, Meek, Bette, Morgan, Rebecca L, Munoz-Guajardo, Irene, Noyes, Pamela D, Parmelli, Elena, Piersma, Aldert, Rooney, Andrew, Sena, Emily, Sullivan, Kristie, Tarazona, José, Terron, Andrea, Thayer, Kris, Turner, Jan, Verbeek, Jos, Verloo, Didier, Vinken, Mathieu, Watford, Sean, Whaley, Paul, Wikoff, Daniele, Willett, Kate, and Tsaioun, Katya
- Abstract
The workshop titled "Application of evidence-based methods to construct mechanism-driven chemical assessment frameworks" was co-organized by the Evidence-based Toxicology Collaboration and the European Food Safety Authority (EFSA), and hosted by EFSA at its headquarters in Parma, Italy on October 2 and 3, 2019. The goal was to explore integration of systematic review methods with mechanistic evidence evaluation. Participants were invited to work on concrete products to advance the exploration of how evidence-based approaches can support the development and application of adverse outcome pathways (AOP) in chemical risk assessment. The workshop discussions were centered around three related themes: 1) assessing certainty in AOPs, 2) literature-based AOP development and 3) integrating certainty in AOPs and non-animal evidence into decision frameworks. Several challenges, mostly related to methodology, were identified, and largely determined the workshop recommendations. The workshop recommendations included the comparison and potential alignment of processes used to develop AOP and systematic review methodology, including the translation of vocabulary of evidence-based methods to AOP and vice versa, the development and improvement of evidence mapping and text mining methods and tools, as well as a call for a fundamental change in chemical risk and uncertainty assessment methodology if to be conducted based on AOPs and new approach methodologies (NAM). The usefulness of evidence-based approaches for mechanism-based chemical risk assessments was stressed, particularly the potential contribution of the rigor and transparency inherent to such approaches in building stakeholders' trust for implementation of NAM evidence and AOP into chemical risk assessment.
- Published
- 2022
18. The VEGA Tool to Check the Applicability Domain Gives Greater Confidence in the Prediction of In Silico Models.
- Author
-
Danieli, Alberto, Colombo, Erika, Raitano, Giuseppa, Lombardo, Anna, Roncaglioni, Alessandra, Manganaro, Alberto, Sommovigo, Alessio, Carnesecchi, Edoardo, Dorne, Jean-Lou C. M., and Benfenati, Emilio
- Subjects
PREDICTION models ,REGRESSION analysis ,CHEMICAL structure ,RISK assessment - Abstract
A sound assessment of in silico models and their applicability domain can support the use of new approach methodologies (NAMs) in chemical risk assessment and requires increasing the users' confidence in this approach. Several approaches have been proposed to evaluate the applicability domain of such models, but their prediction power still needs a thorough assessment. In this context, the VEGA tool capable of assessing the applicability domain of in silico models is examined for a range of toxicological endpoints. The VEGA tool evaluates chemical structures and other features related to the predicted endpoints and is efficient in measuring applicability domain, enabling the user to identify less accurate predictions. This is demonstrated with many models addressing different endpoints, towards toxicity of relevance to human health, ecotoxicological endpoints, environmental fate, physicochemical and toxicokinetic properties, for both regression models and classifiers. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
19. 2 Human Risk Assessment of Heavy Metals: Principles and Applications
- Author
-
Dorne, Jean-Lou C. M., primary, Kass, George E. N., additional, Bordajandi, Luisa R., additional, Amzal, Billy, additional, Bertelsen, Ulla, additional, Castoldi, Anna F., additional, Heppner, Claudia, additional, Eskola, Mari, additional, Fabiansson, Stefan, additional, Ferrari, Pietro, additional, Scaravelli, Elena, additional, Dogliotti, Eugenia, additional, Fuerst, Peter, additional, Boobis, Alan R., additional, and Verger, Philippe, additional
- Published
- 2015
- Full Text
- View/download PDF
20. A Computational Understanding of Inter-Individual Variability in CYP2D6 Activity to Investigate the Impact of Missense Mutations on Ochratoxin A Metabolism
- Author
-
Dorne, Jean Lou C. M., primary, Cirlini, Martina, additional, Louisse, Jochem, additional, Pedroni, Lorenzo, additional, Galaverna, Gianni, additional, and Dellafiora, Luca, additional
- Published
- 2022
- Full Text
- View/download PDF
21. Vipers of Major clinical relevance in Europe: Taxonomy, venom composition, toxicology and clinical management of human bites
- Author
-
Di Nicola, Matteo R., Pontara, Andrea, Kass, George E. N., Kramer, Nynke I., Avella, Ignazio, Pampena, Riccardo, Mercuri, Santo Raffaele, Dorne, Jean Lou C. M., and Paolino, Giovanni
- Subjects
Europe ,Clinical management ,Vipers ,Snakebite ,Venom ,Toxicokinetics - Abstract
76 páginas, 2 tablas, 8 figuras Snakebites in Europe are mostly due to bites from Viperidae species of the genus Vipera. This represents a neglected public health hazard with poorly defined incidence, morbidity and mortality. In Europe, fourteen species of "true vipers" (subfamily Viperinae) are present, eleven of which belong to the genus Vipera. Amongst these, the main medically relevant species due to their greater diffusion across Europe and the highest number of registered snakebites are six, namely: Vipera ammodytes, V. aspis, V. berus, V. latastei, V. seoanei and V. ursinii. Generally speaking, viper venom composition is characterised by many different toxin families, like phospholipases A2, snake venom serine proteases, snake venom metalloproteases, cysteine-rich secretory proteins, C-type lectins, disintegrins, haemorrhagic factors and coagulation inhibitors. A suspected snakebite is often associated with severe pain, erythema, oedema and, subsequently, the onset of an ecchymotic area around one or two visible fang marks. In the field, the affected limb should be immobilised and mildly compressed with a bandage, which can then be removed once the patient is being treated in hospital. The clinician should advise the patient to remain calm to reduce blood circulation and, therefore, decrease the spread of the toxins. In the case of pain, an analgesic therapy can be administered, the affected area can be treated with hydrogen peroxide or clean water. However, anti-inflammatory drugs and disinfection with alcohol or alcoholic substances should be avoided. For each patient, clinical chemistry and ECG are always a pre-requisite as well as the evaluation of the tetanus immunisation status and for which immunisation may be provided if needed. The treatment of any clinical complication, due to the envenomation, does not differ from treatments of emergency nature. Antivenom is recommended when signs of systemic envenomation exist or in case of advanced local or systemic progressive symptoms. Recommendations for future work concludes. The aim of this review is to support clinicians for the clinical management of viper envenomation, through taxonomic keys for main species identification, description of venom composition and mode of action of known toxins and provide a standardised clinical protocol and antivenom administration.
- Published
- 2021
22. Vipers of Major clinical relevance in Europe: Taxonomy, venom composition, toxicology and clinical management of human bites
- Author
-
Di Nicola, Matteo R, Pontara, Andrea, Kass, George E N, Kramer, Nynke I, Avella, Ignazio, Pampena, Riccardo, Mercuri, Santo Raffaele, Dorne, Jean Lou C M, Paolino, Giovanni, IRAS OH Toxicology, dIRAS RA-1, IRAS OH Toxicology, and dIRAS RA-1
- Subjects
0301 basic medicine ,medicine.medical_specialty ,VIPeR ,Antivenom ,Vipers ,Snake Bites ,Venom ,Viper Venoms ,Toxicology ,03 medical and health sciences ,0302 clinical medicine ,Viperidae ,biology.animal ,medicine ,Animals ,Humans ,Snakebite ,Envenomation ,Viperinae ,biology ,Vipera ammodytes ,Antivenins ,business.industry ,Clinical management ,Disease Management ,Classification ,biology.organism_classification ,Dermatology ,Toxicokinetics ,Europe ,030104 developmental biology ,Snake venom ,business ,030217 neurology & neurosurgery - Abstract
76 páginas, 2 tablas, 8 figuras, Snakebites in Europe are mostly due to bites from Viperidae species of the genus Vipera. This represents a neglected public health hazard with poorly defined incidence, morbidity and mortality. In Europe, fourteen species of "true vipers" (subfamily Viperinae) are present, eleven of which belong to the genus Vipera. Amongst these, the main medically relevant species due to their greater diffusion across Europe and the highest number of registered snakebites are six, namely: Vipera ammodytes, V. aspis, V. berus, V. latastei, V. seoanei and V. ursinii. Generally speaking, viper venom composition is characterised by many different toxin families, like phospholipases A2, snake venom serine proteases, snake venom metalloproteases, cysteine-rich secretory proteins, C-type lectins, disintegrins, haemorrhagic factors and coagulation inhibitors. A suspected snakebite is often associated with severe pain, erythema, oedema and, subsequently, the onset of an ecchymotic area around one or two visible fang marks. In the field, the affected limb should be immobilised and mildly compressed with a bandage, which can then be removed once the patient is being treated in hospital. The clinician should advise the patient to remain calm to reduce blood circulation and, therefore, decrease the spread of the toxins. In the case of pain, an analgesic therapy can be administered, the affected area can be treated with hydrogen peroxide or clean water. However, anti-inflammatory drugs and disinfection with alcohol or alcoholic substances should be avoided. For each patient, clinical chemistry and ECG are always a pre-requisite as well as the evaluation of the tetanus immunisation status and for which immunisation may be provided if needed. The treatment of any clinical complication, due to the envenomation, does not differ from treatments of emergency nature. Antivenom is recommended when signs of systemic envenomation exist or in case of advanced local or systemic progressive symptoms. Recommendations for future work concludes. The aim of this review is to support clinicians for the clinical management of viper envenomation, through taxonomic keys for main species identification, description of venom composition and mode of action of known toxins and provide a standardised clinical protocol and antivenom administration.
- Published
- 2021
23. Vipers of Major clinical relevance in Europe: Taxonomy, venom composition, toxicology and clinical management of human bites
- Author
-
IRAS OH Toxicology, dIRAS RA-1, Di Nicola, Matteo R, Pontara, Andrea, Kass, George E N, Kramer, Nynke I, Avella, Ignazio, Pampena, Riccardo, Mercuri, Santo Raffaele, Dorne, Jean Lou C M, Paolino, Giovanni, IRAS OH Toxicology, dIRAS RA-1, Di Nicola, Matteo R, Pontara, Andrea, Kass, George E N, Kramer, Nynke I, Avella, Ignazio, Pampena, Riccardo, Mercuri, Santo Raffaele, Dorne, Jean Lou C M, and Paolino, Giovanni
- Published
- 2021
24. Derivation of a Human In Vivo Benchmark Dose for Perfluorooctanoic Acid From ToxCast In Vitro Concentration–Response Data Using a Computational Workflow for Probabilistic Quantitative In Vitro to In Vivo Extrapolation
- Author
-
Loizou, George, primary, McNally, Kevin, additional, Dorne, Jean-Lou C. M., additional, and Hogg, Alex, additional
- Published
- 2021
- Full Text
- View/download PDF
25. 2. Human Risk Assessment of Heavy Metals: Principles and Applications
- Author
-
Dorne, Jean-Lou C. M., primary, Kass, George E. N., additional, Bordajandi, Luisa R., additional, Amzal, Billy, additional, Bertelsen, Ulla, additional, Castoldi, Anna F., additional, Heppner, Claudia, additional, Eskola, Mari, additional, Fabiansson, Stefan, additional, Ferrari, Pietro, additional, Scaravelli, Elena, additional, Dogliotti, Eugenia, additional, Fuerst, Peter, additional, Boobis, Alan R., additional, and Verger, Philippe, additional
- Published
- 2010
- Full Text
- View/download PDF
26. Preventing the Interaction between Coronaviruses Spike Protein and Angiotensin I Converting Enzyme 2: An In Silico Mechanistic Case Study on Emodin as a Potential Model Compound
- Author
-
Dellafiora, Luca, primary, Dorne, Jean Lou C M, additional, Galaverna, Gianni, additional, and Dall’Asta, Chiara, additional
- Published
- 2020
- Full Text
- View/download PDF
27. Integrated In Silico Models for the Prediction of No-Observed-(Adverse)-Effect Levels and Lowest-Observed-(Adverse)-Effect Levels in Rats for Sub-chronic Repeated-Dose Toxicity
- Author
-
Gadaleta, Domenico, primary, Marzo, Marco, additional, Toropov, Andrey, additional, Toropova, Alla, additional, Lavado, Giovanna J., additional, Escher, Sylvia E., additional, Dorne, Jean Lou C. M., additional, and Benfenati, Emilio, additional
- Published
- 2020
- Full Text
- View/download PDF
28. Current EU research activities on combined exposure to multiple chemicals
- Author
-
Bopp, Stephanie K, Barouki, Robert, Brack, Werner, Dalla Costa, Silvia, Dorne, Jean-Lou C M, Drakvik, Paula E, Faust, Michael, Karjalainen, Tuomo K, Kephalopoulos, Stylianos, van Klaveren, Jacob, Kolossa-Gehring, Marike, Kortenkamp, Andreas, Lebret, Erik, Lettieri, Teresa, Nørager, Sofie, Rüegg, Joëlle, Tarazona, Jose V, Trier, Xenia, van de Water, Bob, van Gils, Jos, Bergman, Åke, Sub RIVM, dIRAS RA-2, Sub RIVM, and dIRAS RA-2
- Subjects
0301 basic medicine ,PNEC, predicted no effect concentration ,SMRI, similar mixture risk indicator ,010501 environmental sciences ,MoA, mode of action ,01 natural sciences ,PBTK, physiologically based toxicokinetic (model) ,AOP, adverse outcome pathway ,TTC, Threshold of Toxicological Concern ,NAM, new approach methodology ,Order (exchange) ,MCRA, Monte Carlo risk assessment tool ,CMEP, chemical monitoring and emerging pollutants ,lcsh:Environmental sciences ,General Environmental Science ,media_common ,lcsh:GE1-350 ,IATA, integrated approach to testing and assessment ,Legislature ,Environmental exposure ,CAG, cumulative assessment group ,IPRA, integrated probabilistic risk assessment ,DEB, dynamic energy budget ,RDT, repeated dose systemic toxicity ,Risk assessment ,Exposure data ,IA, independent action ,DART, developmental and reproductive toxicity ,EBT, effect-based tools ,MSFD, Marine Strategy Framework Directive ,TK, toxicokinetic ,CRA, cumulative risk assessment ,AO, adverse outcome ,BMD, benchmark dose modelling ,MCR, maximum cumulative ratio ,MRA, mixture risk assessment ,Complex Mixtures ,PEC, predicted exposure concentration ,Risk Assessment ,SYRINA, systematic review and integrated assessment ,Hazardous Substances ,Article ,03 medical and health sciences ,iPSC, induced pluripotent stem cells ,EDC, endocrine disrupting chemical ,LOE, lines of evidence ,media_common.cataloged_instance ,Animals ,Humans ,BQE, biological quality element ,European Union ,European union ,Environmental planning ,0105 earth and related environmental sciences ,Exposure assessment ,QSAR, quantitative structure activity relationship ,Research ,EQS, environmental quality standard ,Environmental Exposure ,MEC, measured exposure concentration ,Effect assessment ,030104 developmental biology ,HBM, human biomonitoring ,13. Climate action ,WFD, Water Framework Directive ,CA, concentration addition - Abstract
Humans and wildlife are exposed to an intractably large number of different combinations of chemicals via food, water, air, consumer products, and other media and sources. This raises concerns about their impact on public and environmental health. The risk assessment of chemicals for regulatory purposes mainly relies on the assessment of individual chemicals. If exposure to multiple chemicals is considered in a legislative framework, it is usually limited to chemicals falling within this framework and co-exposure to chemicals that are covered by a different regulatory framework is often neglected. Methodologies and guidance for assessing risks from combined exposure to multiple chemicals have been developed for different regulatory sectors, however, a harmonised, consistent approach for performing mixture risk assessments and management across different regulatory sectors is lacking. At the time of this publication, several EU research projects are running, funded by the current European Research and Innovation Programme Horizon 2020 or the Seventh Framework Programme. They aim at addressing knowledge gaps and developing methodologies to better assess chemical mixtures, by generating and making available internal and external exposure data, developing models for exposure assessment, developing tools for in silico and in vitro effect assessment to be applied in a tiered framework and for grouping of chemicals, as well as developing joint epidemiological-toxicological approaches for mixture risk assessment and for prioritising mixtures of concern. The projects EDC-MixRisk, EuroMix, EUToxRisk, HBM4EU and SOLUTIONS have started an exchange between the consortia, European Commission Services and EU Agencies, in order to identify where new methodologies have become available and where remaining gaps need to be further addressed. This paper maps how the different projects contribute to the data needs and assessment methodologies and identifies remaining challenges to be further addressed for the assessment of chemical mixtures., Highlights • Mapping EU funded research projects to different aspects of mixture risk assessment. • Overview of current status and methodological developments • Need to further address data and knowledge gaps overarching different chemical sectors
- Published
- 2018
29. Integrated In Silico Models for the Prediction of No-Observed-(Adverse)-Effect Levels and Lowest-Observed-(Adverse)-Effect Levels in Rats for Sub-chronic Repeated-Dose Toxicity.
- Author
-
Gadaleta, Domenico, Marzo, Marco, Toropov, Andrey, Toropova, Alla, Lavado, Giovanna J., Escher, Sylvia E., Dorne, Jean Lou C. M., and Benfenati, Emilio
- Published
- 2021
- Full Text
- View/download PDF
30. Current EU research activities on combined exposure to multiple chemicals
- Author
-
Sub RIVM, dIRAS RA-2, Bopp, Stephanie K, Barouki, Robert, Brack, Werner, Dalla Costa, Silvia, Dorne, Jean-Lou C M, Drakvik, Paula E, Faust, Michael, Karjalainen, Tuomo K, Kephalopoulos, Stylianos, van Klaveren, Jacob, Kolossa-Gehring, Marike, Kortenkamp, Andreas, Lebret, Erik, Lettieri, Teresa, Nørager, Sofie, Rüegg, Joëlle, Tarazona, Jose V, Trier, Xenia, van de Water, Bob, van Gils, Jos, Bergman, Åke, Sub RIVM, dIRAS RA-2, Bopp, Stephanie K, Barouki, Robert, Brack, Werner, Dalla Costa, Silvia, Dorne, Jean-Lou C M, Drakvik, Paula E, Faust, Michael, Karjalainen, Tuomo K, Kephalopoulos, Stylianos, van Klaveren, Jacob, Kolossa-Gehring, Marike, Kortenkamp, Andreas, Lebret, Erik, Lettieri, Teresa, Nørager, Sofie, Rüegg, Joëlle, Tarazona, Jose V, Trier, Xenia, van de Water, Bob, van Gils, Jos, and Bergman, Åke
- Published
- 2018
31. Current EU research activities on combined exposure to multiple chemicals
- Author
-
Bopp, Stephanie K., Barouki, Robert, Brack, Werner, Dalla Costa, Silvia, Dorne, Jean-Lou C. M., Drakvik, Paula E., Faust, Michael, Karjalainen, Tuomo K., Kephalopoulos, Stylianos, van Klaveren, Jacob, Kolossa-Gehring, Marike, Kortenkamp, Andreas, Lebret, Erik, Lettieri, Teresa, Nørager, Sofie, Rüegg, Joelle, Tarazona, Jose V., Trier, Xenia, van de Water, Bob, van Gils, Jos, Bergman, Åke, Bopp, Stephanie K., Barouki, Robert, Brack, Werner, Dalla Costa, Silvia, Dorne, Jean-Lou C. M., Drakvik, Paula E., Faust, Michael, Karjalainen, Tuomo K., Kephalopoulos, Stylianos, van Klaveren, Jacob, Kolossa-Gehring, Marike, Kortenkamp, Andreas, Lebret, Erik, Lettieri, Teresa, Nørager, Sofie, Rüegg, Joelle, Tarazona, Jose V., Trier, Xenia, van de Water, Bob, van Gils, Jos, and Bergman, Åke
- Abstract
Humans and wildlife are exposed to an intractably large number of different combinations of chemicals via food, water, air, consumer products, and other media and sources. This raises concerns about their impact on public and environmental health. The risk assessment of chemicals for regulatory purposes mainly relies on the assessment of individual chemicals. If exposure to multiple chemicals is considered in a legislative framework, it is usually limited to chemicals falling within this framework and co-exposure to chemicals that are covered by a different regulatory framework is often neglected. Methodologies and guidance for assessing risks from combined exposure to multiple chemicals have been developed for different regulatory sectors, however, a harmonised, consistent approach for performing mixture risk assessments and management across different regulatory sectors is lacking. At the time of this publication, several EU research projects are running, funded by the current European Research and Innovation Programme Horizon 2020 or the Seventh Framework Programme. They aim at addressing knowledge gaps and developing methodologies to better assess chemical mixtures, by generating and making available internal and external exposure data, developing models for exposure assessment, developing tools for in silico and in vitro effect assessment to be applied in a tiered framework and for grouping of chemicals, as well as developing joint epidemiological-toxicological approaches for mixture risk assessment and for prioritising mixtures of concern. The projects EDC-MixRisk, EuroMix, EUToxRisk, HBM4EU and SOLUTIONS have started an exchange between the consortia, European Commission Services and EU Agencies, in order to identify where new methodologies have become available and where remaining gaps need to be further addressed. This paper maps how the different projects contribute to the data needs and assessment methodologies and identifies remaining challenges to be fu, Funding Agencies:European Union's Seventh Framework Programme for research, technological development and demonstration 603437 European Union's Horizon 2020 research and innovation programme 634880 633172 733032 681002 Strategic Programme RIVM
- Published
- 2018
- Full Text
- View/download PDF
32. Integrated In SilicoModels for the Prediction of No-Observed-(Adverse)-Effect Levels and Lowest-Observed-(Adverse)-Effect Levels in Rats for Sub-chronic Repeated-Dose Toxicity
- Author
-
Gadaleta, Domenico, Marzo, Marco, Toropov, Andrey, Toropova, Alla, Lavado, Giovanna J., Escher, Sylvia E., Dorne, Jean Lou C. M., and Benfenati, Emilio
- Abstract
Repeated-dose toxicity (RDT) is a critical endpoint for hazard characterization of chemicals and is assessed to derive safe levels of exposure for human health. Here we present the first attempt to model simultaneously no-observed-(adverse)-effect level (NO(A)EL) and lowest-observed-(adverse)-effect level (LO(A)EL). Classification and regression models were derived based on rat sub-chronic repeated dose toxicity data for 327 compounds from the Fraunhofer RepDose database. Multi-category classification models were built for both NO(A)EL and LO(A)EL though a consensus of statistics- and fragment-based algorithms, while regression models were based on quantitative relationships between the endpoints and SMILES-based attributes. NO(A)EL and LO(A)EL models were integrated, and predictions were compared to exclude inconsistent values. This strategy improved the performance of single models, leading to R2greater than 0.70, root-mean-square error (RMSE) lower than 0.60 (for regression models), and accuracy of 0.61–0.73 (for classification models) on the validation set, based on the endpoint and the threshold applied for selecting predictions. This study confirms the effectiveness of the modeling strategy presented here for assessing RDT of chemicals using in silicomodels.
- Published
- 2021
- Full Text
- View/download PDF
33. Weighing evidence and assessing uncertainties
- Author
-
Dorne, Jean Lou C. M., primary, Bottex, Bernard, additional, Merten, Caroline, additional, Germini, Andrea, additional, Georgiadis, Nikolaos, additional, Aiassa, Elisa, additional, Martino, Laura, additional, Rhomberg, Lorenz, additional, Clewell, Harvey J., additional, Greiner, Matthias, additional, Suter, Glenn W., additional, Whelan, Maurice, additional, Hart, Andrew D. M., additional, Knight, Derek, additional, Agarwal, Prabhat, additional, Younes, Maged, additional, Alexander, Jan, additional, and Hardy, Anthony R., additional
- Published
- 2016
- Full Text
- View/download PDF
34. The effects on terrestrial invertebrates of reducing pesticide inputs in arable crop edges: a meta-analysis
- Author
-
FRAMPTON, GEOFF K., primary and DORNE, JEAN LOU C. M., additional
- Published
- 2007
- Full Text
- View/download PDF
35. In depth review analysis aiming to establish scientific regulatory criteria for the classification of chemical substances as cardiotoxicants according to relevant EU legislation
- Author
-
Georgiadis, Nikolaos, Kouretas, Dimitrios, Stagos, Dimitrios, Toutouzas, Konstantinos, Asprodini, Eftihia K., Kovatsi, Lida - Kalliopi, Kass, George E. N., and Dorne, Jean-Lou C. M.
- Subjects
Χημικές ουσίες -- Τοξικότητα ,Heart -- Effect of chemicals on ,Χημικές ουσίες -- Δίκαιο και νομοθεσία ,Τοξικότητα -- Έλεγχος - Published
- 2022
- Full Text
- View/download PDF
36. Retrospective Detection of Ophidiomyces ophidiicola from Snake Moults Collected in Bieszczady Mountains, Poland.
- Author
-
Marini D, Szczygieł P, Kurek K, Di Nicola MR, Dorne JCM, Marenzoni ML, Rüegg J, Bury S, and Kiraga Ł
- Abstract
Ophidiomyces ophidiicola , the causative agent of ophidiomycosis, poses a potential threat to wild snakes worldwide. This study aimed to retrospectively investigate the prevalence of O. ophidiicola in archived snake moults collected from the San River Valley in the Bieszczady Mountains, Poland, from 2010 to 2012. Using qPCR for O. ophidiicola detection and conventional PCR for clade characterisation, we analysed 58 moults and one road-killed specimen of Zamenis longissimus and Natrix natrix . A novel combination of primers (ITS2L) was used to simultaneously confirm SYBR Green-based qPCR results and perform genotyping. O. ophidiicola has been detected from two Z. longissimus and one N. natrix specimens. The identified clade (I-B) is consistent with those found in wild snakes of eastern Europe and San River Valley, indicating that O. ophidiicola has been present in this region for at least a decade. This study underscores the value of historical samples in understanding the long-term presence of pathogens and highlights the potential role of environmental reservoirs in the persistence of O. ophidiicola . Our findings are crucial for informing conservation strategies for the endangered Aesculapian snake populations in Poland, emphasising the need for ongoing monitoring and habitat management to mitigate the potential impact of ophidiomycosis.
- Published
- 2024
- Full Text
- View/download PDF
37. An in silico insight on the mechanistic aspects of gelsenicine toxicity: A reverse screening study pointing to the possible involvement of acetylcholine binding receptor.
- Author
-
Pedroni L, Dorne JLCM, Dall'Asta C, and Dellafiora L
- Abstract
Gelsedine-type alkaloids are highly toxic plant secondary metabolites produced by shrubs belonging to the Gelsemium genus. Gelsenicine is one of the most concerning gelsedine-type alkaloids with a lethal dose lower than 1 mg/Kg in mice. Several reported episodes of poisoning in livestock and fatality cases in humans due to the usage of Gelsemium plants extracts were reported. Also, gelsedine-type alkaloids were found in honey constituting a potential food safety issue. However, their toxicological understanding is scarce and the molecular mechanism underpinning their toxicity needs further investigations. In this context, an in silico approach based on reverse screening, docking and molecular dynamics successfully identified a possible gelsenicine biological target shedding light on its toxicodynamics. In line with the available crystallographic data, it emerged gelsenicine could target the acetylcholine binding protein possibly acting as a partial agonist against α7 nicotinic acetylcholine receptor (AChR). Overall, these results agreed with evidence previously reported and prioritized AChR for further dedicated analysis., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
38. Pilot survey reveals ophidiomycosis in dice snakes Natrix tessellata from Lake Garda, Italy.
- Author
-
Marini D, Di Nicola MR, Crocchianti V, Notomista T, Iversen D, Coppari L, Di Criscio M, Brouard V, Dorne JCM, Rüegg J, and Marenzoni ML
- Subjects
- Lakes, DNA, Mitochondrial, Animals, Italy epidemiology, Onygenales, Colubridae
- Abstract
Ophidiomycosis is an emerging infectious disease caused by the fungus Ophidiomyces ophidiicola (Oo). To date, Oo presence or associated disease condition has been recorded in wild and/or captive snakes from North America, Europe, Asia and Australia, but the data is still scarce outside the Nearctic. Although Italy is a country with a high snake biodiversity in the European panorama, and animals with clinical signs compatible with Oo infection have been documented, to date no investigations have reported the disease in the wild. Therefore, a pilot survey for the Italian territory was performed in conjunction with setting up a complete diagnostic workflow including SYBR Green-based real-time PCR assay for the detection of Oo genomic and mitochondrial DNA combined with histopathology of scale clips. Oo presence was investigated in 17 wild snake specimens from four different species. Four snakes were sampled in a targeted location where the mycosis was suspected via citizen science communications (i.e. North of the Lake Garda), whereas other ophidians were collected following opportunistic sampling. Oo genomic and mitochondrial DNA were detected and sequenced from all four Lake Garda Natrix tessellata, including three juveniles with macroscopic signs such as discolouration and skin crusts. From histopathological examination of scale clips, the three young positive individuals exhibited ulceration, inflammation and intralesional hyphae consistent with Oo infection, and two of them also showed the presence of arthroconidial tufts and solitary cylindrical arthrospores, allowing "Ophidiomycosis and Oo shedder" categorisation. For the remaining snake samples, the real-time PCR tested negative for Oo. This pilot survey permitted to localise for the first time Oo infection in free-ranging ophidians from Italy. Ophidiomycosis from Lake Garda highlights the need to increase sampling efforts in this area as well as in other northern Italian lakes to assess the occurrence of the pathogen, possible risk factors of the infection, its impact on host population fitness and the disease ecology of Oo in European snakes., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
39. A computational study on the biotransformation of alkenylbenzenes by a selection of CYPs: Reflections on their possible bioactivation.
- Author
-
Pedroni L, Louisse J, Dorne JCM, Dall'Asta C, and Dellafiora L
- Subjects
- Cytochrome P-450 Enzyme System genetics, Cytochrome P-450 Enzyme System metabolism, Biotransformation, Carcinogens toxicity, Carcinogens metabolism, Safrole metabolism, Cytochrome P-450 CYP1A1 metabolism
- Abstract
Alkenylbenzenes are aromatic compounds found in several vegetable foods that can cause genotoxicity upon bioactivation by members of the cytochrome P450 (CYP) family, forming 1'-hydroxy metabolites. These intermediates act as proximate carcinogens and can be further converted into reactive 1'-sulfooxy metabolites, which are the ultimate carcinogens responsible for genotoxicity. Safrole, a member of this class, has been banned as a food or feed additive in many countries based on its genotoxicity and carcinogenicity. However, it can still enter the food and feed chain. There is limited information about the toxicity of other alkenylbenzenes that may be present in safrole-containing foods, such as myristicin, apiole, and dillapiole. In vitro studies showed safrole as mainly bioactivated by CYP2A6 to form its proximate carcinogen, while for myristicin this is mainly done by CYP1A1. However, it is not known whether CYP1A1 and CYP2A6 can activate apiole and dillapiole. The present study uses an in silico pipeline to investigate this knowledge gap and determine whether CYP1A1 and CYP2A6 may play a role in the bioactivation of these alkenylbenzenes. The study found that the bioactivation of apiole and dillapiole by CYP1A1 and CYP2A6 is limited, possibly indicating that these compounds may have limited toxicity, while describing a possible role of CYP1A1 in the bioactivation of safrole. The study expands the current understanding of safrole toxicity and bioactivation and helps understand the mechanisms of CYPs involved in the bioactivation of alkenylbenzenes. This information is essential for a more informed analysis of alkenylbenzenes toxicity and risk assessment., Competing Interests: Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Luca Dellafiora reports financial support was provided by European Food Safety Authority., (Copyright © 2023 Elsevier B.V. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
40. The use of new approach methodologies for the environmental risk assessment of food and feed chemicals.
- Author
-
Nicola MRD, Cattaneo I, Nathanail AV, Carnesecchi E, Astuto MC, Steinbach M, Williams AJ, Charles S, Gestin O, Lopes C, Lamonica D, Tarazona JV, and Dorne JLCM
- Abstract
New Approach Methodologies (NAMs) provide tools for supporting both human and environmental risk assessment (HRA and ERA). This short review provides recent insights regarding the use of NAMs in ERA of food and feed chemicals. We highlight the usefulness of tiered methods supporting weight-of-evidence approaches in relation to problem formulation (i.e., data availability, time, and resource availability). In silico models, including quantitative structure activity relationship models, support filling data gaps when no chemical property or ecotoxicological data are available, and biologically-based models (e.g., toxicokinetic-toxicodynamic models, dynamic energy models, physiologically-based models and species sensitivity distributions) are applicable in more data rich situations, including landscape-based modelling approaches. Particular attention is given to provide practical examples to apply the approaches described in real-world settings. We conclude with future perspectives, with regards to the need for addressing complex challenges such as chemical mixtures and multiple stressors in a wide range of organisms and ecosystems.
- Published
- 2023
- Full Text
- View/download PDF
41. A regression-based QSAR-model to predict acute toxicity of aromatic chemicals in tadpoles of the Japanese brown frog (Rana japonica): Calibration, validation, and future developments to support risk assessment of chemicals in amphibians.
- Author
-
Toropov AA, Di Nicola MR, Toropova AP, Roncaglioni A, Carnesecchi E, Kramer NI, Williams AJ, Ortiz-Santaliestra ME, Benfenati E, and Dorne JCM
- Subjects
- Animals, Calibration, Larva, Risk Assessment, Quantitative Structure-Activity Relationship, Ranidae
- Abstract
Amphibian populations are undergoing a global decline worldwide. Such decline has been attributed to their unique physiology, ecology, and exposure to multiple stressors including chemicals, temperature, and biological hazards such as fungi of the Batrachochytrium genus, viruses such as Ranavirus, and habitat reduction. There are limited toxicity data for chemicals available for amphibians and few quantitative structure-activity relationship (QSAR) models have been developed and are publicly available. Such QSARs provide important tools to assess the toxicity of chemicals particularly in a data poor context. QSARs provide important tools to assess the toxicity of chemicals particularly when no toxicological data are available. This manuscript provides a description and validation of a regression-based QSAR model to predict, in a quantitative manner, acute lethal toxicity of aromatic chemicals in tadpoles of the Japanese brown frog (Rana japonica). QSAR models for acute median lethal molar concentrations (LC50-12 h) of waterborne chemicals using the Monte Carlo method were developed. The statistical characteristics of the QSARs were described as average values obtained from five random distributions into training and validation sets. Predictions from the model gave satisfactory results for the overall training set (R
2 = 0.72 and RMSE = 0.33) and were even more robust for the validation set (R2 = 0.96 and RMSE = 0.11). Further development of QSAR models in amphibians, particularly for other life stages and species, are discussed., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Nynke I. Kramer reports financial support was provided by Lush. Edoardo Carnesecchi reports financial support was provided by Lush. Matteo R. Di Nicola reports financial support was provided by Lush. Emilio Benfenati reports financial support was provided by European Food Safety Authority., (Copyright © 2022 Elsevier B.V. All rights reserved.)- Published
- 2022
- Full Text
- View/download PDF
42. QSAR models for soil ecotoxicity: Development and validation of models to predict reproductive toxicity of organic chemicals in the collembola Folsomia candida.
- Author
-
Lavado GJ, Baderna D, Carnesecchi E, Toropova AP, Toropov AA, Dorne JLCM, and Benfenati E
- Subjects
- Animals, Ecosystem, Organic Chemicals, Quantitative Structure-Activity Relationship, Reproduction, Soil, Arthropods, Soil Pollutants toxicity
- Abstract
Soil pollution is a critical environmental challenge: the substances released in the soil can adversely affect humans and the ecosystem. Several bioassays were developed to investigate the soil ecotoxicity of chemicals with soil microbes, plants, invertebrates and vertebrates. The 28-day collembolan reproduction test with the springtail Folsomia candida is a recently introduced bioassay described by OECD guideline 232. Although the importance of springtails for maintaining soil quality, toxicity data for Collembola are still limited. We have developed two QSAR models for the prediction of reproductive toxicity induced by organic compounds in Folsomia candida using 28 days NOEC data. We assembled a dataset with the highest number of compounds available so far: 54 compounds were collected from publicly available sources, including plant protection products, reactive intermediates and industrial chemicals, household and cosmetic ingredients, drugs, environmental transformation products and polycyclic aromatic hydrocarbons. The models were developed using partial least squares regression (PLS) and the Monte Carlo technique with respectively the open source tools Small Dataset Modeler and CORAL software. Both QSAR models gave good predictive performance even though based on a small dataset, so they could serve for the ecological risk assessment of chemicals for terrestrial organisms., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
43. Investigating the interaction between organic anion transporter 1 and ochratoxin A: An in silico structural study to depict early molecular events of substrate recruitment and the impact of single point mutations.
- Author
-
Louisse J, Dorne JLCM, and Dellafiora L
- Subjects
- Gene Expression Regulation drug effects, Genetic Variation, Humans, Models, Molecular, Molecular Docking Simulation, Organic Anion Transport Protein 1 genetics, Protein Conformation, Structure-Activity Relationship, Ochratoxins toxicity, Organic Anion Transport Protein 1 metabolism
- Abstract
Organic anion transporters (OATs) belong to a subgroup of the solute carrier 22 transporter family. OATs have a central role in xenobiotic disposition affecting the toxicokinetics of its substrates and inter-individual differences in their expression, activity and function impact both toxicokinetics and toxicodynamics. Amongst OATs, OAT1 (solute carrier family 22 member 6) is involved in the urinary excretion of many xenobiotics bringing substrates into renal proximal tubular cells which can then be secreted across the apical membrane into the tubule lumen. The mycotoxin ochratoxin A has been shown to have a high affinity for OAT1, which is an important renal transporter involved in its urinary excretion. Nowadays, molecular modeling techniques are widely applied to assess protein-ligand interactions and may provide a tool to depict the mechanic of xenobiotic action be it toxicokinetics or toxicodynamics. This work provides a structured pipeline consisting of docking and molecular dynamic simulations to study OAT1-ligand interactions and the impact of OAT1 polymorphisms on such interactions. Such a computational structure-based analytical framework allowed to: i) model OAT1-substrate complex formation and depict the features correlating its sequence, structure and its capability to recruit substrates; and ii) investigate the impact of OAT1 missense mutations on substrate recruitment. Perspectives on applying such a structured pipeline to xenobiotic-metabolising enzymes are discussed., Competing Interests: Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Luca Dellafiora reports financial support was provided by European Food Safety Authority., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
44. Application of evidence-based methods to construct mechanism-driven chemical assessment frameworks.
- Author
-
Hoffmann S, Aiassa E, Angrish M, Beausoleil C, Bois FY, Ciccolallo L, Craig PS, De Vries RBM, Dorne JLCM, Druwe IL, Edwards SW, Eskes C, Georgiadis M, Hartung T, Kienzler A, Kristjansson EA, Lam J, Martino L, Meek B, Morgan RL, Munoz-Guajardo I, Noyes PD, Parmelli E, Piersma A, Rooney A, Sena E, Sullivan K, Tarazona J, Terron A, Thayer K, Turner J, Verbeek J, Verloo D, Vinken M, Watford S, Whaley P, Wikoff D, Willett K, and Tsaioun K
- Subjects
- Food Safety, Humans, Italy, Risk Assessment methods, Adverse Outcome Pathways
- Abstract
The workshop titled “Application of evidence-based methods to construct mechanism-driven chemical assessment frameworks” was co-organized by the Evidence-based Toxicology Collaboration and the European Food Safety Authority (EFSA) and hosted by EFSA at its headquarters in Parma, Italy on October 2 and 3, 2019. The goal was to explore integration of systematic review with mechanistic evidence evaluation. Participants were invited to work on concrete products to advance the exploration of how evidence-based approaches can support the development and application of adverse outcome pathways (AOP) in chemical risk assessment. The workshop discussions were centered around three related themes: 1) assessing certainty in AOPs, 2) literature-based AOP development, and 3) integrating certainty in AOPs and non-animal evidence into decision frameworks. Several challenges, mostly related to methodology, were identified and largely determined the workshop recommendations. The workshop recommendations included the comparison and potential alignment of processes used to develop AOP and systematic review methodology, including the translation of vocabulary of evidence-based methods to AOP and vice versa, the development and improvement of evidence mapping and text mining methods and tools, as well as a call for a fundamental change in chemical risk and uncertainty assessment methodology if to be conducted based on AOPs and new approach methodologies (NAM). The usefulness of evidence-based approaches for mechanism-based chemical risk assessments was stressed, particularly the potential contribution of the rigor and transparency inherent to such approaches in building stakeholders’ trust for implementation of NAM evidence and AOPs into chemical risk assessment.
- Published
- 2022
- Full Text
- View/download PDF
45. In Silico Methods for Environmental Risk Assessment: Principles, Tiered Approaches, Applications, and Future Perspectives.
- Author
-
Astuto MC, Di Nicola MR, Tarazona JV, Rortais A, Devos Y, Liem AKD, Kass GEN, Bastaki M, Schoonjans R, Maggiore A, Charles S, Ratier A, Lopes C, Gestin O, Robinson T, Williams A, Kramer N, Carnesecchi E, and Dorne JCM
- Subjects
- Computer Simulation, Quantitative Structure-Activity Relationship, Risk Assessment, Ecosystem, Ecotoxicology
- Abstract
This chapter aims to introduce the reader to the basic principles of environmental risk assessment of chemicals and highlights the usefulness of tiered approaches within weight of evidence approaches in relation to problem formulation i.e., data availability, time and resource availability. In silico models are then introduced and include quantitative structure-activity relationship (QSAR) models, which support filling data gaps when no chemical property or ecotoxicological data are available. In addition, biologically-based models can be applied in more data rich situations and these include generic or species-specific models such as toxicokinetic-toxicodynamic models, dynamic energy budget models, physiologically based models, and models for ecosystem hazard assessment i.e. species sensitivity distributions and ultimately for landscape assessment i.e. landscape-based modeling approaches. Throughout this chapter, particular attention is given to provide practical examples supporting the application of such in silico models in real-world settings. Future perspectives are discussed to address environmental risk assessment in a more holistic manner particularly for relevant complex questions, such as the risk assessment of multiple stressors and the development of harmonized approaches to ultimately quantify the relative contribution and impact of single chemicals, multiple chemicals and multiple stressors on living organisms., (© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2022
- Full Text
- View/download PDF
46. Sourcing data on chemical properties and hazard data from the US-EPA CompTox Chemicals Dashboard: A practical guide for human risk assessment.
- Author
-
Williams AJ, Lambert JC, Thayer K, and Dorne JCM
- Subjects
- Animals, Computer Simulation, Humans, Risk Assessment, United States, United States Environmental Protection Agency
- Abstract
For the past six decades, human health risk assessment of chemicals has relied on in vivo data from human epidemiological and experimental animal toxicological studies to inform the derivation of non-cancer toxicity values. The ongoing evolution of this risk assessment paradigm in an environmental landscape of data-poor chemicals has highlighted the need to develop and implement non-testing methods, so-called New Approach Methodologies (NAMs). NAMs include a growing number of in silico and in vitro data streams designed to inform hazard properties of chemicals, including kinetics and dynamics at different levels of biological organization, environmental fate and transport, and exposure. NAMs provide a fit-for-purpose science-basis for human hazard and risk characterization of chemicals ranging from data-gap filling applications to broad evidence-based decision-making. Systematic assembly and delivery of empirical and predicted data for chemicals are paramount to advancing chemical evaluation, and software tools serve an essential role in delivering these data to the scientific community. The CompTox Chemicals Dashboard (from here on referred to as the "Dashboard") is one such tool and is a publicly available web-based application developed by the US Environmental Protection Agency to provide access to chemistry, toxicity and exposure information for ~900,000 chemicals. The Dashboard is increasingly becoming a valuable resource for assessors tasked with the evaluation of potential human health risks associated with chemical exposures. In this context, the significant amount of information present in the Dashboard facilitates: 1) assembly of information on physicochemical properties and environmental fate and transport and exposure parameters and metrics; 2) identification of cancer and non-cancer health effects from extant human and experimental animal studies in the public domain and/or information not available in the public domain (i.e., "grey literature"); 3) systematic literature searching and review for developing cancer and non-cancer hazard evidence bases; and 4) access to mechanistic information that can aid or augment the analysis of traditional toxicology evidence bases, or potentially, serve as the primary basis for informing hazard identification and dose-response when traditional bioassay data are lacking. Finally, in silico predictive tools developed to conduct structure-activity or read-across analyses are also available within the Dashboard. This practical tutorial is intended to address key questions from the human health risk assessment community dealing with chemicals in both food and in the environment. Perspectives for future development or refinement of the Dashboard highlight foreseen activities to further support the research and risk assessment community in cancer and non-cancer chemical evaluations., (Published by Elsevier Ltd.)
- Published
- 2021
- Full Text
- View/download PDF
47. Vipers of Major clinical relevance in Europe: Taxonomy, venom composition, toxicology and clinical management of human bites.
- Author
-
Di Nicola MR, Pontara A, Kass GEN, Kramer NI, Avella I, Pampena R, Mercuri SR, Dorne JLCM, and Paolino G
- Subjects
- Animals, Classification methods, Disease Management, Europe epidemiology, Humans, Snake Bites epidemiology, Antivenins therapeutic use, Snake Bites classification, Snake Bites drug therapy, Viper Venoms classification, Viper Venoms toxicity, Viperidae classification
- Abstract
Snakebites in Europe are mostly due to bites from Viperidae species of the genus Vipera. This represents a neglected public health hazard with poorly defined incidence, morbidity and mortality. In Europe, fourteen species of "true vipers" (subfamily Viperinae) are present, eleven of which belong to the genus Vipera. Amongst these, the main medically relevant species due to their greater diffusion across Europe and the highest number of registered snakebites are six, namely: Vipera ammodytes, V. aspis, V. berus, V. latastei, V. seoanei and V. ursinii. Generally speaking, viper venom composition is characterised by many different toxin families, like phospholipases A2, snake venom serine proteases, snake venom metalloproteases, cysteine-rich secretory proteins, C-type lectins, disintegrins, haemorrhagic factors and coagulation inhibitors. A suspected snakebite is often associated with severe pain, erythema, oedema and, subsequently, the onset of an ecchymotic area around one or two visible fang marks. In the field, the affected limb should be immobilised and mildly compressed with a bandage, which can then be removed once the patient is being treated in hospital. The clinician should advise the patient to remain calm to reduce blood circulation and, therefore, decrease the spread of the toxins. In the case of pain, an analgesic therapy can be administered, the affected area can be treated with hydrogen peroxide or clean water. However, anti-inflammatory drugs and disinfection with alcohol or alcoholic substances should be avoided. For each patient, clinical chemistry and ECG are always a pre-requisite as well as the evaluation of the tetanus immunisation status and for which immunisation may be provided if needed. The treatment of any clinical complication, due to the envenomation, does not differ from treatments of emergency nature. Antivenom is recommended when signs of systemic envenomation exist or in case of advanced local or systemic progressive symptoms. Recommendations for future work concludes. The aim of this review is to support clinicians for the clinical management of viper envenomation, through taxonomic keys for main species identification, description of venom composition and mode of action of known toxins and provide a standardised clinical protocol and antivenom administration., (Copyright © 2021 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
48. [Corrigendum] What is considered cardiotoxicity of anthracyclines in animal studies.
- Author
-
Georgiadis N, Tsarouhas K, Rezaee R, Nepka H, Kass GEN, Dorne JCM, Stagos D, Toutouzas K, Spandidos DA, Kouretas D, and Tsitsimpikou C
- Abstract
Subsequently to the publication of this paper, the authors have realized that the name of the seventh listed author, Dimitrios Stagos, was spelt incorrectly (it appeared as 'Stagkos' in print). The corrected author list is shown above. The authors regret that the name of the seventh author on the paper was spelt incorrectly, and apologize to the readers for any inconvenience caused.[the original article was published in Oncology Reports 44: 798-818, 2020; DOI: 10.3892/or.2020.7688].
- Published
- 2020
- Full Text
- View/download PDF
49. Integrating QSAR models predicting acute contact toxicity and mode of action profiling in honey bees (A. mellifera): Data curation using open source databases, performance testing and validation.
- Author
-
Carnesecchi E, Toma C, Roncaglioni A, Kramer N, Benfenati E, and Dorne JLCM
- Subjects
- Animals, Bees, Ecosystem, Quantitative Structure-Activity Relationship, Reproducibility of Results, Data Curation, Pesticides
- Abstract
Honey bees (Apis mellifera) provide key ecosystem services as pollinators bridging agriculture, the food chain and ecological communities, thereby ensuring food production and security. Ecological risk assessment of single Plant Protection Products (PPPs) requires an understanding of the exposure and toxicity. In silico tools such as QSAR models can play a major role for the prediction of structural, physico-chemical and pharmacokinetic properties of chemicals as well as toxicity of single and multiple chemicals. Here, the first integrative honey bee QSAR model has been developed for PPPs using EFSA's OpenFoodTox, US-EPA ECOTOX and Pesticide Properties DataBase i) to predict acute contact toxicity (LD
50 ) and ii) to profile the Mode of Action (MoA) of pesticides active substances. Three different classification-based and four regression-based models were developed and tested for their performance, thus identifying two models providing the most reliable predictions based on k-NN algorithm. The two-category QSAR model (toxic/non-toxic; n = 411) was validated using sensitivity (=0.93), specificity (=0.85), balanced accuracy (=0.90), and Matthews correlation coefficient (MCC = 0.78) as statistical parameters. The regression-based model (n = 113) was validated for its reliability and robustness (R2 = 0.74; MAE = 0.52). Current study proposes the MoA profiling for 113 pesticides active substances and the first harmonised MoA classification scheme for acute contact toxicity in honey bees, including LD50s data points from three different databases. The classification allows to further define MoAs and the target site of PPPs active substances, thus enabling regulators and scientists to refine chemical grouping and toxicity extrapolations for single chemicals and component-based mixture risk assessment of multiple chemicals. Relevant future perspectives are briefly addressed to integrate MoA, adverse outcome pathways (AOPs) and toxicokinetic information for the refinement of single-chemical/combined toxicity predictions and risk estimates at different levels of biological organization in the bee health context., Competing Interests: Declaration of competing interest Authors have no competing interests to declare., (Copyright © 2020 Elsevier B.V. All rights reserved.)- Published
- 2020
- Full Text
- View/download PDF
50. What is considered cardiotoxicity of anthracyclines in animal studies.
- Author
-
Georgiadis N, Tsarouhas K, Rezaee R, Nepka H, Kass GEN, Dorne JCM, Stagkos D, Toutouzas K, Spandidos DA, Kouretas D, and Tsitsimpikou C
- Subjects
- Animals, Cardiotoxicity etiology, Echocardiography standards, Models, Animal, Rats, Toxicity Tests methods, Anthracyclines toxicity, Antibiotics, Antineoplastic toxicity, Cardiotoxicity diagnosis, Guidelines as Topic, Toxicity Tests standards
- Abstract
Anthracyclines are commonly used anticancer drugs with well‑known and extensively studied cardiotoxic effects in humans. In the clinical setting guidelines for assessing cardiotoxicity are well‑established with important therapeutic implications. Cardiotoxicity in terms of impairment of cardiac function is largely diagnosed by echocardiography and based on objective metrics of cardiac function. Until this day, cardiotoxicity is not an endpoint in the current general toxicology and safety pharmacology preclinical studies, although other classes of drugs apart from anthracyclines, along with everyday chemicals have been shown to manifest cardiotoxic properties. Also, in the relevant literature there are not well‑established objective criteria or reference values in order to uniformly characterize cardiotoxic adverse effects in animal models. This in depth review focuses on the evaluation of two important echocardiographic indices, namely ejection fraction and fractional shortening, in the literature concerning anthracycline administration to rats as the reference laboratory animal model. The analysis of the gathered data gives promising results and solid prospects for both, defining anthracycline cardiotoxicity objective values and delineating the guidelines for assessing cardiotoxicity as a separate hazard class in animal preclinical studies for regulatory purposes.
- Published
- 2020
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.