4,131 results on '"Drew, R."'
Search Results
2. Similarities and differences between men with self-reported lifelong and acquired difficulty reaching ejaculation
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Rowland, David L., McNabney, Sean M., Attinger, Drew R., Harrold, Kathryn J., Kӧvi, Zsuzsanna, and Hevesi, Krisztina
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- 2024
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3. Highly Pathogenic Avian Influenza A(H5N1) Clade 2.3.4.4b Virus Infection in Domestic Dairy Cattle and Cats, United States, 2024
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Burrough, Eric R., Magstadt, Drew R., Petersen, Barbara, Timmermans, Simon J., Gauger, Phillip C., Zhang, Jianqiang, Siepker, Chris, Mainenti, Marta, Li, Ganwu, Thompson, Alexis C., Gorden, Patrick J., Plummer, Paul J., and Main, Rodger
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Avian influenza -- Genetic aspects -- Distribution ,Dairy cattle -- Health aspects ,Cats -- Health aspects ,Health ,Company distribution practices ,Distribution ,Genetic aspects ,Health aspects - Abstract
Highly pathogenic avian influenza (HPAI) viruses pose a threat to wild birds and poultry globally, and HPAI H5N1 viruses are of even greater concern because of their frequent spillover into [...]
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- 2024
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4. Sialic Acid Receptor Specificity in Mammary Gland of Dairy Cattle Infected with Highly Pathogenic Avian Influenza A(H5N1) Virus
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Nelli, Rahul K., Harm, Tyler A., Siepker, Chris, Groeltz-Thrush, Jennifer M., Jones, Brianna, Twu, Ning-Chieh, Nenninger, Ariel S., Magstadt, Drew R., Burrough, Eric R., Pifieyro, Pablo E., Mainenti, Marta, Carnaccini, Silvia, Plummer, Paul J., and Bell, Todd M.
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Avian influenza -- Development and progression ,Avian influenza viruses -- Physiological aspects ,Dairy cattle -- Health aspects ,Mammary glands -- Physiological aspects ,Cattle -- Diseases ,Sialic acids -- Physiological aspects -- Health aspects ,Health ,Physiological aspects ,Development and progression ,Health aspects ,Causes of - Abstract
The recent discovery that dairy cattle can be infected by highly pathogenic avian influenza (HPAI) virus of the H5N1 subtype (2,2), in combination with the virus's propensity to replicate in [...]
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- 2024
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5. Measurement of left ventricular volume with admittance incorporated onto percutaneous ventricular assist device
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Diaz Sanmartin, Luis A., Gruslova, Aleksandra B., Nolen, Drew R., Feldman, Marc D., and Valvano, Jonathan W.
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- 2024
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6. Natural gas odorants: A scoping review of health effects
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Michanowicz, Drew R, Leventhal, Olivia M, Domen, Jeremy K, Williams, Samuel R, Lebel, Eric D, Hill, Lee Ann L, Buonocore, Jonathan J, Nordgaard, Curtis L, Bernstein, Aaron S, and Shonkoff, Seth BC
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Epidemiology ,Public Health ,Health Sciences ,Asthma ,Lung ,Clinical Research ,Aetiology ,2.2 Factors relating to the physical environment ,Respiratory ,Animals ,Humans ,Odorants ,Natural Gas ,community exposure ,downstream natural gas ,health effects ,mercaptans ,odorants ,organosulfur compounds ,Public health - Abstract
Purpose of reviewOrganosulfur compounds are intentionally added to natural gas as malodorants with the intent of short-term nasal inhalation to aid in leak detection. Regulatory exposure limits have not been established for all commonly used natural gas odorants, and recent community-level exposure events and growing evidence of indoor natural gas leakage have raised concerns associated with natural gas odorant exposures. We conducted a scoping review of peer-reviewed scientific publications on human exposures and animal toxicological studies of natural gas odorants to assess toxicological profiles, exposure potential, health effects and regulatory guidelines associated with commonly used natural gas odorants.Recent findingsWe identified only 22 studies which met inclusion criteria for full review. Overall, there is limited evidence of both transient nonspecific health symptoms and clinically diagnosed causative neurotoxic effects associated with prolonged odorant exposures. Across seven community-level exposure events and two occupational case reports, consistent symptom patterns included: headache, ocular irritation, nose and throat irritation, respiratory complaints such as shortness of breath and asthma attacks, and skin irritation and rash. Of these, respiratory inflammation and asthma exacerbations are the most debilitating, whereas the high prevalence of ocular and dermatologic symptoms suggest a non-inhalation route of exposure. The limited evidence available raises the possibility that organosulfur odorants may pose health risks at exposures much lower than presently understood, though additional dose-response studies are needed to disentangle specific toxicologic effects from nonspecific responses to noxious organosulfur odors. Numerous recommendations are provided including more transparent and prescriptive natural gas odorant use practices.
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- 2023
7. Disruption of lysosomal proteolysis in astrocytes facilitates midbrain organoid proteostasis failure in an early-onset Parkinson’s disease model
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Morrone Parfitt, Gustavo, Coccia, Elena, Goldman, Camille, Whitney, Kristen, Reyes, Ricardo, Sarrafha, Lily, Nam, Ki Hong, Sohail, Soha, Jones, Drew R., Crary, John F., Ordureau, Alban, Blanchard, Joel, and Ahfeldt, Tim
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- 2024
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8. Integrating population genetics, stem cell biology and cellular genomics to study complex human diseases
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Farbehi, Nona, Neavin, Drew R., Cuomo, Anna S. E., Studer, Lorenz, MacArthur, Daniel G., and Powell, Joseph E.
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- 2024
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9. Highly Pathogenic Avian Influenza A(H5N1) Clade 2.3.4.4b Virus Infection in Domestic Dairy Cattle and Cats, United States, 2024
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Eric R. Burrough, Drew R. Magstadt, Barbara Petersen, Simon J. Timmermans, Phillip C. Gauger, Jianqiang Zhang, Chris Siepker, Marta Mainenti, Ganwu Li, Alexis C. Thompson, Patrick J. Gorden, Paul J. Plummer, and Rodger Main
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influenza ,highly pathogenic avian influenza A(H5N1) ,HPAI ,avian influenza ,H5N1 ,clade 2.3.4.4b ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
We report highly pathogenic avian influenza A(H5N1) virus in dairy cattle and cats in Kansas and Texas, United States, which reflects the continued spread of clade 2.3.4.4b viruses that entered the country in late 2021. Infected cattle experienced nonspecific illness, reduced feed intake and rumination, and an abrupt drop in milk production, but fatal systemic influenza infection developed in domestic cats fed raw (unpasteurized) colostrum and milk from affected cows. Cow-to-cow transmission appears to have occurred because infections were observed in cattle on Michigan, Idaho, and Ohio farms where avian influenza virus–infected cows were transported. Although the US Food and Drug Administration has indicated the commercial milk supply remains safe, the detection of influenza virus in unpasteurized bovine milk is a concern because of potential cross-species transmission. Continued surveillance of highly pathogenic avian influenza viruses in domestic production animals is needed to prevent cross-species and mammal-to-mammal transmission.
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- 2024
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10. Sialic Acid Receptor Specificity in Mammary Gland of Dairy Cattle Infected with Highly Pathogenic Avian Influenza A(H5N1) Virus
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Rahul K. Nelli, Tyler A. Harm, Chris Siepker, Jennifer M. Groeltz-Thrush, Brianna Jones, Ning-Chieh Twu, Ariel S. Nenninger, Drew R. Magstadt, Eric R. Burrough, Pablo E. Piñeyro, Marta Mainenti, Silvia Carnaccini, Paul J. Plummer, and Todd M. Bell
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sialic acid ,influenza ,viruses ,Neu5Ac ,α2,3-gal ,α2,6-gal ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
In March 2024, the US Department of Agriculture’s Animal and Plant Health Inspection Service reported detection of highly pathogenic avian influenza (HPAI) A(H5N1) virus in dairy cattle in the United States for the first time. One factor that determines susceptibility to HPAI H5N1 infection is the presence of specific virus receptors on host cells; however, little is known about the distribution of the sialic acid (SA) receptors in dairy cattle, particularly in mammary glands. We compared the distribution of SA receptors in the respiratory tract and mammary gland of dairy cattle naturally infected with HPAI H5N1. The respiratory and mammary glands of HPAI H5N1–infected dairy cattle are rich in SA, particularly avian influenza virus–specific SA α2,3-gal. Mammary gland tissues co-stained with sialic acids and influenza A virus nucleoprotein showed predominant co-localization with the virus and SA α2,3-gal. HPAI H5N1 exhibited epitheliotropism within the mammary gland, and we observed rare immunolabeling within macrophages.
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- 2024
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11. Assessing variations in care delivered to rural out of hospital cardiac arrest patients in the interfacility transfer setting
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Michael J. Burla, Peter C. Michalakes, Jeanne S. Wishengrad, Drew R. York, Holly A. Stevens, and Teresa L. May
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Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Objective There is significant variation in out‐of‐hospital cardiac arrest (OHCA) outcomes between different regions. We sought to evaluate outcomes of OHCA patients in the interfacility transfer (IFT) setting, between critical care transport (LifeFlight) and community Emergency Medical Services (EMS), in the state of Maine. Methods This was a retrospective analysis of our institution's electronic medical record and the Maine EMS database. Data were collected from January 1, 2019, to December 31, 2021. Only adult OHCA encounters requiring an IFT for definitive post‐cardiac‐arrest care were included. Demographics, EMS agency, IFT vital signs, targeted temperature management (TTM) medications, cerebral performance category (CPC) scores, survival to discharge, and other descriptive variables were collected. Results Ninety‐three patients met inclusion criteria, with LifeFlight transferring 30 of them (32.3%). LifeFlight was more likely to initiate TTM compared to other EMS agencies (p = 0.012), have run‐sheets reported (p = 0.001), and serve rural areas (p = 0.036). LifeFlight was associated with more epinephrine (0.034) and norepinephrine (
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- 2024
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12. Temporal Trends of Racial and Socioeconomic Disparities in Population Exposures to Upstream Oil and Gas Development in California
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González, David JX, Morton, Claire M, Hill, Lee Ann L, Michanowicz, Drew R, Rossi, Robert J, Shonkoff, Seth BC, Casey, Joan A, and Morello‐Frosch, Rachel
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Prevention ,Basic Behavioral and Social Science ,Behavioral and Social Science - Abstract
People living near oil and gas development are exposed to multiple environmental stressors that pose health risks. Some studies suggest these risks are higher for racially and socioeconomically marginalized people, which may be partly attributable to disparities in exposures. We examined whether racially and socioeconomically marginalized people in California are disproportionately exposed to oil and gas wells and associated hazards. We longitudinally assessed exposure to wells during three time periods (2005-2009, 2010-2014, and 2015-2019) using sociodemographic data at the census block group-level. For each block group and time period, we assessed exposure to new, active, retired, and plugged wells, and cumulative production volume. We calculated risk ratios to determine whether marginalized people disproportionately resided near wells (within 1 km). Averaged across the three time periods, we estimated that 1.1 million Californians (3.0%) lived within 1 km of active wells. Nearly 9 million Californians (22.9%) lived within 1 km of plugged wells. The proportion of Black residents near active wells was 42%-49% higher than the proportion of Black residents across California, and the proportion of Hispanic residents near active wells was 4%-13% higher than their statewide proportion. Disparities were greatest in areas with the highest oil and gas production, where the proportion of Black residents was 105%-139% higher than statewide. Socioeconomically marginalized residents also had disproportionately high exposure to wells. Though oil and gas production has declined in California, marginalized communities persistently had disproportionately high exposure to wells, potentially contributing to health disparities.
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- 2023
13. Associations of Urban Blue and Green Spaces With Coronary Artery Calcification in Black Individuals and Disadvantaged Neighborhoods
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Kim, Kyeezu, Joyce, Brian T., Zheng, Yinan, Nannini, Drew R., Wang, Jun, Gordon-Larsen, Penny, Bhatt, Ankeet, Gabriel, Kelley, Shikany, James M., Hu, Ming, Chen, Aimin, Reges, Orna, Carnethon, Mercedes R., Lloyd-Jones, Donald M., Zhang, Kai, and Hou, Lifang
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- 2024
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14. Letter to the editor regarding: 'Challenging unverified assumptions in causal claims: Do gas stoves increase risk of pediatric asthma?'
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Kari C. Nadeau, Yannai Kashtan, Metta Nicholson, Colin J. Finnegan, Zutao Ouyang, Anchal Garg, Eric D. Lebel, Sebastian T. Rowland, Drew R. Michanowicz, and Robert B. Jackson
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Infectious and parasitic diseases ,RC109-216 - Published
- 2024
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15. Genomic characterization of highly pathogenic avian influenza A H5N1 virus newly emerged in dairy cattle
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Xiao Hu, Anugrah Saxena, Drew R. Magstadt, Phillip C. Gauger, Eric R. Burrough, Jianqiang Zhang, Chris Siepker, Marta Mainenti, Patrick J. Gorden, Paul J. Plummer, and Ganwu Li
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Highly pathogenic avian influenza (HPAI) ,H5N1 ,clade 2.3.4.4b ,dairy cattle ,reassortment events ,genome sequence ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
In March 2024, the emergence of highly pathogenic avian influenza (HPAI) A (H5N1) infections in dairy cattle was detected in the United Sates for the first time. We genetically characterize HPAI viruses from dairy cattle showing an abrupt drop in milk production, as well as from two cats, six wild birds, and one skunk. They share nearly identical genome sequences, forming a new genotype B3.13 within the 2.3.4.4b clade. B3.13 viruses underwent two reassortment events since 2023 and exhibit critical mutations in HA, M1, and NS genes but lack critical mutations in PB2 and PB1 genes, which enhance virulence or adaptation to mammals. The PB2 E627 K mutation in a human case associated with cattle underscores the potential for rapid evolution post infection, highlighting the need for continued surveillance to monitor public health threats.
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- 2024
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16. Chemotherapy-induced acceleration of DNA methylation-based biological age in breast cancer
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Drew R. Nannini, Rene Cortese, Christopher VonTungeln, and Gerhard C. Hildebrandt
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breast cancer ,chemotherapy ,epigenetic age ,biological ageing ,Genetics ,QH426-470 - Abstract
Breast cancer is the most common cancer diagnosed in women and is often treated with chemotherapy. Although previous studies have demonstrated increasing biological age in patients who receive chemotherapy, evaluation of this association with DNA methylation-based markers of biological ageing may provide novel insight into the role of chemotherapy on the ageing process. We therefore sought to investigate the association between chemotherapy and markers of biological ageing as estimated from DNA methylation in women with breast cancer. DNA methylation profiling was performed on peripheral blood collected from 18 patients before and after the first cycle of chemotherapy using the Infinium HumanMethylation450 BeadChip. Six markers of biological age acceleration were estimated from DNA methylation levels. Multiple linear regression analyses were performed to evaluate the association between each metric of biological age acceleration and chemotherapy. After adjusting for chronological age and race, intrinsic epigenetic age acceleration (p = 0.041), extrinsic epigenetic age acceleration (p = 0.050), PhenoAge acceleration (p = 0.001), GrimAge acceleration (p
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- 2024
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17. Alcohol consumption and epigenetic age acceleration in young adults
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Nannini, Drew R, Joyce, Brian T, Zheng, Yinan, Gao, Tao, Wang, Jun, Liu, Lei, Jacobs, David R, Schreiner, Pamela J, Liu, Chunyu, Dai, Qi, Horvath, Steve, Lu, Ake T, Yaffe, Kristine, Greenland, Philip, Lloyd-Jones, Donald M, and Hou, Lifang
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Pediatric ,Clinical Research ,Genetics ,Underage Drinking ,Alcoholism ,Alcohol Use and Health ,Aging ,Substance Misuse ,2.3 Psychological ,social and economic factors ,Aetiology ,Oral and gastrointestinal ,Cardiovascular ,Stroke ,Cancer ,Good Health and Well Being ,Aged ,Humans ,Alcohol Drinking ,Alcoholic Beverages ,Beer ,Binge Drinking ,United States ,Wine ,Epigenomics ,alcohol ,epigenetic age ,DNA methylation ,lifetime alcohol consumption ,binge drinking ,Biochemistry and Cell Biology ,Physiology ,Oncology and Carcinogenesis ,Developmental Biology - Abstract
Alcohol is a widely consumed substance in the United States, however its effect on aging remains understudied. In this study of young adults, we examined whether cumulative alcohol consumption, i.e., alcohol years of beer, liquor, wine, and total alcohol, and recent binge drinking, were associated with four measures of age-related epigenetic changes via blood DNA methylation. A random subset of study participants in the Coronary Artery Risk Development in Young Adults Study underwent DNA methylation profiling using the Illumina MethylationEPIC Beadchip. Participants with alcohol consumption and methylation data at examination years 15 (n = 1,030) and 20 (n = 945) were included. Liquor and total alcohol consumption were associated with a 0.31-year (P = 0.002) and a 0.12-year (P = 0.013) greater GrimAge acceleration (GAA) per additional five alcohol years, while beer and wine consumption observed marginal (P = 0.075) and no associations (P = 0.359) with GAA, respectively. Any recent binge drinking and the number of days of binge drinking were associated with a 1.38-year (P < 0.001) and a 0.15-year (P < 0.001) higher GAA, respectively. We observed statistical interactions between cumulative beer (P < 0.001) and total alcohol (P = 0.004) consumption with chronological age, with younger participants exhibiting a higher average in GAA compared to older participants. No associations were observed with the other measures of epigenetic aging. These results suggest cumulative liquor and total alcohol consumption and recent binge drinking may alter age-related epigenetic changes as captured by GAA. With the increasing aging population and widespread consumption of alcohol, these findings may have potential implications for lifestyle modification to promote healthy aging.
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- 2023
18. Marijuana use and DNA methylation-based biological age in young adults
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Nannini, Drew R, Zheng, Yinan, Joyce, Brian T, Gao, Tao, Liu, Lei, Jacobs, David R, Schreiner, Pamela, Liu, Chunyu, Horvath, Steve, Lu, Ake T, Yaffe, Kristine, Sidney, Stephen, Greenland, Philip, Lloyd-Jones, Donald M, and Hou, Lifang
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Biological Sciences ,Genetics ,Clinical Research ,Human Genome ,Alcoholism ,Alcohol Use and Health ,Cannabinoid Research ,Aging ,Substance Misuse ,Cancer ,Cardiovascular ,Good Health and Well Being ,Humans ,Young Adult ,DNA Methylation ,Marijuana Use ,Epigenesis ,Genetic ,Epigenomics ,Marijuana ,Epigenetic age acceleration ,Alcohol ,CARDIA ,Clinical Sciences ,Paediatrics and Reproductive Medicine - Abstract
BackgroundMarijuana is the third most commonly used drug in the USA and efforts to legalize it for medical and recreational use are growing. Despite the increase in use, marijuana's effect on aging remains understudied and understanding the effects of marijuana on molecular aging may provide novel insights into the role of marijuana in the aging process. We therefore sought to investigate the association between cumulative and recent use of marijuana with epigenetic age acceleration (EAA) as estimated from blood DNA methylation.ResultsA random subset of participants from The Coronary Artery Risk Development in Young Adults (CARDIA) Study with available whole blood at examination years (Y) 15 and Y20 underwent epigenomic profiling. Four EAA estimates (intrinsic epigenetic age acceleration, extrinsic epigenetic age acceleration, PhenoAge acceleration, and GrimAge acceleration) were calculated from DNA methylation levels measured at Y15 and Y20. Ever use and cumulative marijuana-years were calculated from the baseline visit to Y15 and Y20, and recent marijuana use (both any and number of days of use in the last 30 days) were calculated at Y15 and Y20. Ever use of marijuana and each additional marijuana-year were associated with a 6-month (P
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- 2022
19. Climatic temperature and precipitation jointly influence body size in species of western rattlesnakes
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Jesse M. Meik, Jessica A. Watson, Drew R. Schield, Blair W. Perry, Yannick Francioli, Hannah Guss, Stephen P. Mackessy, and Todd A. Castoe
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Bergmann’s rule ,biogeography ,body size evolution ,Crotalus ,redundancy analysis ,variation partitioning ,Science - Abstract
Both the metabolic theory of ecology and dynamic energy budget theory predict that climate influences body size through its effects on first-order determinants of energetics: reactive temperatures, carbon resources and oxygen availability. Although oxygen is seldom limiting in terrestrial systems, temperature and resources vary spatially. We used redundancy analyses and variation partitioning to evaluate the influence of climatic temperature, precipitation and their seasonalities on multivariate body size across the distributions of four species of the western rattlesnake group in North America (Crotalus pyrrhus, C. scutulatus, C. oreganus and C. viridis). Most species showed a pattern of increased body size in cooler, mesic climates and decreased body size in warmer, xeric climates. Exceptions to the pattern provided additional context through climatic idiosyncrasies in the distributions of each species. For example, the general pattern of a negative influence of temperature on body size was not apparent for C. oreganus, which ranges across the mildest climates overall among the four species. In contrast to previous studies, we found that seasonality had negligible effects on body size. We suggest that precipitation gradients correlate positively with resource availability in driving intraspecific body size and that temperature compounds this gradient by increasing baseline metabolic demands and restricting activity in particularly warm or otherwise extreme climates.
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- 2024
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20. A simplified method for preventing postmortem alterations of brain prostanoids for true in situ level quantification
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Derek Besch, Drew R. Seeger, Brennon Schofield, Svetlana A. Golovko, Meredith Parmer, and Mikhail Y. Golovko
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arachidonic acid ,brain Lipids ,cyclooxygenase ,lipidomics ,prostaglandins ,Biochemistry ,QD415-436 - Abstract
Dramatic postmortem prostanoid (PG) enzymatic synthesis in the brain causes a significant artifact during PG analysis. Thus, enzyme deactivation is required for an accurate in situ endogenous PG quantification. To date, the only method for preventing postmortem brain PG increase with tissue structure preservation is fixation by head-focused microwave irradiation (MW), which is considered the gold standard method, allowing for rapid in situ heat-denaturation of enzymes. However, MW requires costly equipment that suffers in reproducibility, causing tissue loss and metabolite degradation if overheated. Our recent study indicates that PGs are not synthesized in the ischemic brain unless metabolically active tissue is exposed to atmospheric O2. Based on this finding, we proposed a simple and reproducible alternative method to prevent postmortem PG increase by slow enzyme denaturation before craniotomy. To test this approach, mice were decapitated directly into boiling saline. Brain temperature reached 100°C after ∼140 s during boiling, though 3 min boiling was required to completely prevent postmortem PG synthesis, but not free arachidonic acid release. To validate this fixation method, brain basal and lipopolysaccharide (LPS)-induced PG were analyzed in unfixed, MW, and boiled tissues. Basal and LPS-induced PG levels were not different between MW and boiled brains. However, unfixed tissue showed a significant postmortem increase in PG at basal conditions, with lesser differences upon LPS treatment compared to fixed tissue. These data indicate for the first time that boiling effectively prevents postmortem PG alterations, allowing for a reproducible, inexpensive, and conventionally accessible tissue fixation method for PG analysis.
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- 2024
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21. Understanding the Inherent Properties of Vapor Phase Poly (3,4 – Ethylenedioxythiophene) Deposited Stretchable Conducting Films
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Vithyasaahar Sethumadhavan, Eliza Switalska, Mahboobeh Shahbazi, Yong Li, Kamil Zuber, Tony Wang, Jose Alarco, Drew R. Evans, and Prashant Sonar
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conducting polymers and SEBS substrates ,PEDOT ,stretchable conductors wearable sensing ,Electric apparatus and materials. Electric circuits. Electric networks ,TK452-454.4 ,Physics ,QC1-999 - Abstract
Abstract Stretchable conducting films are a prime necessity for future stretchable and wearable electronics. In this work, highly conducting poly(3,4 ethylenedioxythiophene):Tosylate (PEDOT:Tos) films are deposited on extremely stretchable styrene‐ethylene‐butylene‐styrene (SEBS) substrates via vapor phase polymerization (VPP) and their inherent properties are systematically studied. The charge transport and electrical properties of VPP PEDOT:Tos stretchable films are measured from room temperature down to the low temperature of 5 K. Interestingly, the mechanical properties of the stretchable substrate lead to buckling of the PEDOT:Tos that affect the electrical conductivity but not the charge carrier mobility, optical, and structural properties. The VPP PEDOT:Tos on the stretchable SEBS substrate show a semiconducting behavior as electrical resistance is enhanced upon cooling from room temperature to 5 K. Such kind of stretchable conducting films can be used for stretchable transistors, wearable sensing, energy storage, and electrochromic applications.
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- 2024
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22. A dynamic spatial filtering approach to mitigate underestimation bias in field calibrated low-cost sensor air-pollution data
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Heffernan, Claire, Peng, Roger, Gentner, Drew R., Koehler, Kirsten, and Datta, Abhirup
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Statistics - Applications - Abstract
Low-cost air pollution sensors, offering hyper-local characterization of pollutant concentrations, are becoming increasingly prevalent in environmental and public health research. However, low-cost air pollution data can be noisy, biased by environmental conditions, and usually need to be field-calibrated by collocating low-cost sensors with reference-grade instruments. We show, theoretically and empirically, that the common procedure of regression-based calibration using collocated data systematically underestimates high air pollution concentrations, which are critical to diagnose from a health perspective. Current calibration practices also often fail to utilize the spatial correlation in pollutant concentrations. We propose a novel spatial filtering approach to collocation-based calibration of low-cost networks that mitigates the underestimation issue by using an inverse regression. The inverse-regression also allows for incorporating spatial correlations by a second-stage model for the true pollutant concentrations using a conditional Gaussian Process. Our approach works with one or more collocated sites in the network and is dynamic, leveraging spatial correlation with the latest available reference data. Through extensive simulations, we demonstrate how the spatial filtering substantially improves estimation of pollutant concentrations, and measures peak concentrations with greater accuracy. We apply the methodology for calibration of a low-cost PM2.5 network in Baltimore, Maryland, and diagnose air pollution peaks that are missed by the regression-calibration.
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- 2022
23. Composition, Emissions, and Air Quality Impacts of Hazardous Air Pollutants in Unburned Natural Gas from Residential Stoves in California
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Lebel, Eric D, Michanowicz, Drew R, Bilsback, Kelsey R, Hill, Lee Ann L, Goldman, Jackson SW, Domen, Jeremy K, Jaeger, Jessie M, Ruiz, Angélica, and Shonkoff, Seth BC
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Prevention ,Good Health and Well Being ,Humans ,Air Pollutants ,Natural Gas ,Benzene ,Environmental Monitoring ,Air Pollution ,Benzene Derivatives ,Xylenes ,Toluene ,BTEX ,benzene ,downstream ,fossil fuels ,natural gas leak ,cooking ,hazardous air pollutants ,indoor air quality ,regional BTEX inventories ,Environmental Sciences - Abstract
The presence of hazardous air pollutants (HAPs) entrained in end-use natural gas (NG) is an understudied source of human health risks. We performed trace gas analyses on 185 unburned NG samples collected from 159 unique residential NG stoves across seven geographic regions in California. Our analyses commonly detected 12 HAPs with significant variability across region and gas utility. Mean regional benzene, toluene, ethylbenzene, and total xylenes (BTEX) concentrations in end-use NG ranged from 1.6-25 ppmv─benzene alone was detected in 99% of samples, and mean concentrations ranged from 0.7-12 ppmv (max: 66 ppmv). By applying previously reported NG and methane emission rates throughout California's transmission, storage, and distribution systems, we estimated statewide benzene emissions of 4,200 (95% CI: 1,800-9,700) kg yr-1 that are currently not included in any statewide inventories─equal to the annual benzene emissions from nearly 60,000 light-duty gasoline vehicles. Additionally, we found that NG leakage from stoves and ovens while not in use can result in indoor benzene concentrations that can exceed the California Office of Environmental Health Hazard Assessment 8-h Reference Exposure Level of 0.94 ppbv─benzene concentrations comparable to environmental tobacco smoke. This study supports the need to further improve our understanding of leaked downstream NG as a source of health risk.
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- 2022
24. Patient subtyping analysis of baseline multi-omic data reveals distinct pre-immune states associated with antibody response to seasonal influenza vaccination
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Sevim Bayrak, Cigdem, Forst, Christian V., Jones, Drew R., Gresham, David J., Pushalkar, Smruti, Wu, Shaohuan, Vogel, Christine, Mahal, Lara K., Ghedin, Elodie, Ross, Ted, García-Sastre, Adolfo, and Zhang, Bin
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- 2024
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25. Disruption of lysosomal proteolysis in astrocytes facilitates midbrain organoid proteostasis failure in an early-onset Parkinson’s disease model
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Gustavo Morrone Parfitt, Elena Coccia, Camille Goldman, Kristen Whitney, Ricardo Reyes, Lily Sarrafha, Ki Hong Nam, Soha Sohail, Drew R. Jones, John F. Crary, Alban Ordureau, Joel Blanchard, and Tim Ahfeldt
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Science - Abstract
Abstract Accumulation of advanced glycation end products (AGEs) on biopolymers accompanies cellular aging and drives poorly understood disease processes. Here, we studied how AGEs contribute to development of early onset Parkinson’s Disease (PD) caused by loss-of-function of DJ1, a protein deglycase. In induced pluripotent stem cell (iPSC)-derived midbrain organoid models deficient for DJ1 activity, we find that lysosomal proteolysis is impaired, causing AGEs to accumulate, α-synuclein (α-syn) phosphorylation to increase, and proteins to aggregate. We demonstrated these processes are at least partly driven by astrocytes, as DJ1 loss reduces their capacity to provide metabolic support and triggers acquisition of a pro-inflammatory phenotype. Consistently, in co-cultures, we find that DJ1-expressing astrocytes are able to reverse the proteolysis deficits of DJ1 knockout midbrain neurons. In conclusion, astrocytes’ capacity to clear toxic damaged proteins is critical to preserve neuronal function and their dysfunction contributes to the neurodegeneration observed in a DJ1 loss-of-function PD model.
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- 2024
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26. Modulation of GluA2–γ5 synaptic complex desensitization, polyamine block and antiepileptic perampanel inhibition by auxiliary subunit cornichon-2
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Gangwar, Shanti Pal, Yen, Laura Y., Yelshanskaya, Maria V., Korman, Aryeh, Jones, Drew R., and Sobolevsky, Alexander I.
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- 2023
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27. Detection and disease diagnosis trends (2017–2022) for Streptococcus suis, Glaesserella parasuis, Mycoplasma hyorhinis, Actinobacillus suis and Mycoplasma hyosynoviae at Iowa State University Veterinary Diagnostic Laboratory
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Ana Paula Serafini Poeta Silva, Marcelo Almeida, Alyona Michael, Michael C. Rahe, Christopher Siepker, Drew R. Magstadt, Pablo Piñeyro, Bailey L. Arruda, Nubia R. Macedo, Orhan Sahin, Philip C. Gauger, Karen M. Krueger, Robert Mugabi, Jessica S. Streauslin, Giovani Trevisan, Daniel C. L. Linhares, Gustavo S. Silva, Eduardo Fano, Rodger G. Main, Kent J. Schwartz, Eric R. Burrough, Rachel J. Derscheid, Panchan Sitthicharoenchai, and Maria J. Clavijo
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Streptococcus suis ,Glaesserella parasuis ,Mycoplasma hyorhinis ,Actinobacillus suis ,Mycoplasma hyosynoviae ,Detection ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Accurate measurement of disease associated with endemic bacterial agents in pig populations is challenging due to their commensal ecology, the lack of disease-specific antemortem diagnostic tests, and the polymicrobial nature of swine diagnostic cases. The main objective of this retrospective study was to estimate temporal patterns of agent detection and disease diagnosis for five endemic bacteria that can cause systemic disease in porcine tissue specimens submitted to the Iowa State University Veterinary Diagnostic Laboratory (ISU VDL) from 2017 to 2022. The study also explored the diagnostic value of specific tissue specimens for disease diagnosis, estimated the frequency of polymicrobial diagnosis, and evaluated the association between phase of pig production and disease diagnosis. Results S. suis and G. parasuis bronchopneumonia increased on average 6 and 4.3%, while S. suis endocarditis increased by 23% per year, respectively. M. hyorhinis and A. suis associated serositis increased yearly by 4.2 and 12.8%, respectively. A significant upward trend in M. hyorhinis arthritis cases was also observed. In contrast, M. hyosynoviae arthritis cases decreased by 33% average/year. Investigation into the diagnostic value of tissues showed that lungs were the most frequently submitted sample, However, the use of lung for systemic disease diagnosis requires caution due to the commensal nature of these agents in the respiratory system, compared to systemic sites that diagnosticians typically target. This study also explored associations between phase of production and specific diseases caused by each agent, showcasing the role of S. suis arthritis in suckling pigs, meningitis in early nursery and endocarditis in growing pigs, and the role of G. parasuis, A. suis, M. hyorhinis and M. hyosynoviae disease mainly in post-weaning phases. Finally, this study highlighted the high frequency of co-detection and -disease diagnosis with other infectious etiologies, such as PRRSV and IAV, demonstrating that to minimize the health impact of these endemic bacterial agents it is imperative to establish effective viral control programs. Conclusions Results from this retrospective study demonstrated significant increases in disease diagnosis for S. suis, G. parasuis, M. hyorhinis, and A. suis, and a significant decrease in detection and disease diagnosis of M. hyosynoviae. High frequencies of interactions between these endemic agents and with viral pathogens was also demonstrated. Consequently, improved control programs are needed to mitigate the adverse effect of these endemic bacterial agents on swine health and wellbeing. This includes improving diagnostic procedures, developing more effective vaccine products, fine-tuning antimicrobial approaches, and managing viral co-infections.
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- 2023
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28. Phylogeny and historical biogeography of the swallow family (Hirundinidae) inferred from comparisons of thousands of UCE loci
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Schield, Drew R., Brown, Clare E., Shakya, Subir B., Calabrese, Gina M., Safran, Rebecca J., and Sheldon, Frederick H.
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- 2024
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29. A simplified method for preventing postmortem alterations of brain prostanoids for true in situ level quantification
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Besch, Derek, Seeger, Drew R., Schofield, Brennon, Golovko, Svetlana A., Parmer, Meredith, and Golovko, Mikhail Y.
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- 2024
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30. Tenecteplase versus standard of care for minor ischaemic stroke with proven occlusion (TEMPO-2): a randomised, open label, phase 3 superiority trial
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Salluzzi, Marina, Blenkin, Nicole, Dueck, Ashley, Doram, Craig, Zhang, Qiao, Kenney, Carol, Ryckborst, Karla, Bohn, Shelly, Collier, Quentin, Taylor, Frances, Lethebe, B. Cord, Jambula, Anitha, Sage, Kayla, Toussaint, Lana, Save, Supryia, Lee, Jaclyn, Laham, N, Sultan, A.A., Deepak, A., Sitaram, A., Demchuk, Andrew M., Lockey, A., Micielli, A., Wadhwa, A., Arabambi, B., Graham, B., Bogiatzi, Chrysi, Doshi, Darshan, Chakraborty, D., Kim, Diana, Vasquez, D, Singh, D, Tse, Dominic, Harrison, E., Smith, E.E., Teleg, E., Klourfeld, E., Klein, G., Sebastian, I.A., Evans, J, Hegedus, J, Kromm, J, Lin, K, Ignacio, K, Ghavami, Kimia, Ismail, M., Moores, M., Panzini, M.A., Boyko, M., Almekhlafi, M.A., Newcommon, Nancy, Maraj, N., Imoukhuede, O., Volny, O., Stys, Peter, Couillard, Phillipe, Ojha, P., Eswaradass, P., Joundi, Raed, Singh, R., Asuncion, R.M., Muir, R.T., Dey, S., Mansoor, S., Wasyliw, S., Nagendra, S., Hu, Sherry, Althubait, S., Chen, S., Bal, S., Van Gaal, Stephen, Peters, Steven, Ray, Sucharita, Chaturvedi, S., Subramaniam, Suresh, Fu, Vivian, Villaluna, K., Maclean, G., King-Azote, P., Ma, C., Plecash, A., Murphy, C., Gorman, J., Wilson, L., Zhou, L., Benevente, O., Teal, P., Yip, S., Mann, S., Dewar, B., Demetroff, M., Shamloul, R., Beardshaw, R., Roberts, S., Blaquiere, D., Stotts, G., Shamy, M., Bereznyakova, O., Fahed, R., Alesefir, W., Lavoie, Suzy, Hache, A., Collard, K, Mackey, A., Gosselin-Lefebvre, S., Verreault, S., Beauchamp, B., Lambourn, L., Khaw, A., Mai, L., Sposato, L., Bres Bullrich, M., Azarpazhooh, R., Fridman, S., Kapoor, A., Southwell, A., Bardi, E., Fatakdawala, I., Kamra, M, Lopes, K., Popel, N., Norouzi, V., Liu, A., Liddy, A.M., Ghoari, B., Hawkes, C., Enriquez, C.A., Gladstone, D.J., Manosalva Alzate, H.A., Khosravani, H., Hopyan, J.J., Sivakumar, K., Son, M., Boulos, M.I., Hamind, M.A., Swartz, R.H., Murphy, R., Reiter, S., Fitzpatrick, T., Bhandari, V., Good, J., Penn, M., Naylor, M., Frost, S., Cayley, A., Akthar, F., Williams, J., Kalman, L., Crellin, L., Wiegner, R., Singh, R.S., Stewart, T., To, W., Singh, S., Pikula, A., Jaigobin, C., Carpani, F., Silver, F., Janssen, H., Schaafsma, J., del Campo, M., Alskaini, M., Rajendram, P., Fairall, P., Granfield, B., Crawford, D., Jabs, J., White, L., Sivakumar, L., Piquette, L., Nguyen, T., Nomani, A., Wagner, A., Alrohimi, A., Butt, A., D'Souza, A., Gajurel, B., Vekhande, C., Kamble, H., Kalashyan, H., Lloret, M., Benguzzi, M., Arsalan, N., Ishaque, N., Ashayeriahmadabad, R., Samiento, R., Hosseini, S., Kazi, S., Das, S., Sugumar, T., Selchen, D., Kostyrko, P., Muccilli, A., Saposnik, A.G., Vandervelde, C., Ratnayake, K., McMillan, S., Katsanos, A., Shoamanesh, A., Sahlas, D.J., Naidoo, V., Todorov, V., Toma, H., Brar, J., Lee, J., Horton, M., Shand, E., Weatherby, S., Jin, A., Durafourt, B., Jalini, S., Gardner, A., Tyson, C., Junk, E., Foster, K., Bolt, K., Sylvain, N., Maley, S., Urroz, L., Peeling, L., Kelly, M., Whelan, R., Cooley, R., Teitelbaum, J., Boutayeb, A., Moore, A., Cole, E., Waxman, L., Ben-Amor, N., Sanchez, R., Khalil, S., Nehme, A., Legault, C., Tampieri, D., Ehrensperger, E., Vieira, L., Cortes, M., Angle, M., Hannouche, M., Badawy, M., Werner, K., Wieszmuellner, S., Langer, A., Gisold, A., Zach, H., Rommer, P., Macher, S., Blechinger, S., Marik, W., Series, W., Baumgartinger, M., Krebs, S., Koski, J., Eirola, S., Ivanoff, T., Erakanto, A., Kupari, L., Sibolt, G., Panula, J., Tomppo, L., Tiainen, M., Ahlstrom, M., Martinez Majander, N., Suomalainen, O., Raty, S., Levi, C., Kerr, E., Allen, J., Kaauwai, L.P., Belevski, L., Russell, M., Ormond, S., Chew, A., Loiselle, A., Royan, A., Hughes, B., Garcia Esperon, C., Pepper, E., Miteff, F., He, J., Lycett, M., Min, M., Murray, N., Pavey, N., Starling de Barros, R., Gangadharan, S., Dunkerton, S., Waller, S., Canento Sanchez, T., Wellings, T., Edmonds, G., Whittaker, K.A., Ewing, M., Lee, P., Singkang, R., McDonald, A., Dos Santos, A., Shin, C., Jackson, D., Tsoleridis, J., Fisicchia, L., Parsons, N., Shenoy, N., Smith, S., Sharobeam, A., Balabanski, A., Park, A., Williams, C., Pavlin-Premri, D., Rodrigues, E., Alemseged, F., Ng, F., Zhao, H., Beharry, J., Ng, J.L., Williamson, J., Wong, J.Z.W., Li, K., Kwan, M.K., Valente, M., Yassi, N., Yogendrakumar, V., McNamara, B., Buchanan, C., McCarthy, C., Thomas, G., Stephens, K., Chung, M., Chung, M.F., Tang, M., Busch, T., Frost, T., Lee, R., Stuart, N., Pachani, N., Menon, A., Borojevic, B., Linton, C.M., Garcia, G., Callaly, E.P., Dewey, H., Liu, J., Chen, J., Wong, J., Nowak, K., To, K., Lizak, N.S., Bhalala, O., Park, P., Tan, P., Martins, R., Cody, R., Forbes, R., Chen, S.K., Ooi, S., Tu, S., Dang, Y.L., Ling, Z., Cranefield, J., Drew, R., Tan, A., Kurunawai, C., Harvey, J., Mahadevan, J.J., Cagi, L., Palanikumar, L., Chia, L.N., Goh, R., El-Masri, S., Urbi, B., Rapier, C., Berrill, H., McEvoy, H., Dunning, R., Kuriakose, S., Chad, T., Sapaen, V., Sabet, A., Shah, D., Yeow, D., Lilley, K., Ward, K., Mozhy Mahizhnan, M., Tan, M., Lynch, C., Coveney, S., Tobin, K., McCabe, J., Marnane, M., Murphy, S., Large, M., Moynihan, B., Boyle, K., Sanjuan, E., Sanchis, M., Boned, S., Pancorbo, O., Sala, V., Garcia, L., Garcia-Tornel, A., Juega, J., Pagola, J., Santana, K., Requena, M., Muchada, M., Olive, M., Lozano, P.J., Rubiera, M., Deck, M., Rodriguez, N., Gomez, B., Reyes Munoz, F.J., Gomez, A.S., Sanz, A.C., Garcia, E.C., Penacoba, G., Ramos, M.E., de Lera Alfonso, M., Feliu, A, Pardo, L., Ramirez, P., Murillo, A., Lopez Dominguez, D., Rodriguez, J., Terceno Izaga, M., Reina, M., Viturro, S.B., Bojaryn, U., Vera Monge, V.A., Silva Blas, Y., R Siew, R., Agustin, S J, Seet, C., Tianming, T., d'Emden, A., Murray, A., Welch, A., Hatherley, K., Day, N., Smith, W., MacRae, E., Mitchell, E.S., Mahmood, A., Elliot, J., Neilson, S., Biswas, V., Brown, C., Lewis, A., Ashton, A., Werring, D., Perry, R., Muhammad, R., Lee, Y.C., Black, A., Robinson, A., Williams, A., Banaras, A., Cahoy, C., Raingold, G., Marinescu, M., Atang, N., Bason, N., Francia, N., Obarey, S., Feerick, S., Joseph, J., Schulz, U., Irons, R., Benjamin, J., Quinn, L., Jhoots, M., Teal, R., Ford, G., Harston, G., Bains, H., Gbinigie, I., Mathieson, P., Sim, C.H., Hayter, E., Kennedy, K., Binnie, L., Priestley, N., Williams, R., Ghatala, R., Stratton, S., Blight, A., Zhang, L., Davies, A., Duffy, H., Roberts, J., Homer, J., Roberts, K., Dodd, K., Cawley, K., Martin, M., Leason, S., Cotgreave, S., Taylor, T., Nallasivan, A., Haider, S., Chakraborty, T., Webster, T., Gil, A., Martin, B., Joseph, B., Cabrera, C., Jose, D., Man, J., Aquino, J., Sebastian, S., Osterdahl, M., Kwan, M., Matthew, M., Ike, N., Bello, P., Wilding, P., Fuentes, R., Shah, R., Mashate, S., Patel, T., Nwanguma, U., Dave, V., Haber, A., Lee, A., O'Sullivan, A., Drumm, B., Dawson, A.C., Matar, T., Roberts, D., Taylor, E., Rounis, E., El-Masry, A., O'Hare, C., Kalladka, D., Jamil, S., Auger, S., Raha, O., Evans, M., Vonberg, F., Kalam, S., Ali Sheikh, A., Jenkins, I.H., George, J., Kwan, J., Blagojevic, J., Saeed, M., Haji-Coll, M., Tsuda, M., Sayed, M., Winterkron, N., Thanbirajah, N., Vittay, O., Karim, R., Smail, R.C., Gauhar, S., Elmamoun, S., Malani, S., Pralhad Kelavkar, S., Hiden, J., Ferdinand, P., Sanyal, R., Varquez, R., Smith, B., Okechukwu, C., Fox, E., Collins, E., Courtney, K., Tauro, S., Patterson, C., McShane, D., Roberts, G., McIImoyle, J., McGuire, K., Fearon, P., Gordon, P., Isaacs, K., Lucas, K., Smith, L., Dews, L., Bates, M., Lawrence, S., Heeley, S., Patel, V., Chin, Y.M., Sims, D., Littleton, E., Khaira, J., Nadar, K., Kieliszkowska, A., Sari, B., Domingos Belo, C., Smith, E., Manolo, E.Y., Aeron-Thomas, J., Doheny, M., Garcia Pardo, M., Recaman, M., Tibajia, M.C., Aissa, M., Mah, Y., Yu, T., Meenakshisundaram, S., Heller, S., Alsukhni, R., Williams, O., Farag, M., Benger, M., Engineer, A., Bayhonan, S., Conway, S., Bhalla, A., Nouvakis, D., Theochari, E., Boyle, F., Teo, J., King-Robson, J., Law, K.Y., Sztriha, L., McGovern, A., Day, D., Mitchell-Douglas, J., Francis, J., Iqbal, A., Punjabivaryani, P., Anonuevo Reyes, J., Anonuevo Reyes, M., Pauls, M., Buch, A., Hedstrom, A., Hutchinson, C., Kirkland, C., Newham, J., Wilkes, G., Fleming, L., Fleck, N., Franca, A., Chwal, B., Oldoni, C., Mantovani, G., Noll, G., Zanella, L., Soma, M., Secchi, T., Borelli, W., Rimoli, B.P., da Cunha Silva, G.H., Machado Galvao Mondin, L.A., Barbosa Cerantola, R., Imthon, A.K., Esaki, A.S., Camilo, M., Vincenzi, O.C., ds Cruz, R.R., Morillos, M.B., Riccioppa Rodrigues, G.G., Santos Ferreira, K., Pazini, A.M., Pena Pereira, M.A., de Albuquerque, A.L.A., Massote Fontanini, C.E., Matinez Rubio, C.F., dos Santos, D.T., Dias, F.A., Alves, F.F.A., Milani, C., Pegorer Santos, B., Winckler, F., De Souza, J.T., Bonome, L.A.M., Cury Silva, V.A., Teodoro, R.S., Modolo, G.P., Ferreira, N.C., Barbosa dos Santos, D.F., dos Santos Moreira, J.C., Cruz Guedes de Morais, A.B., Vieira, J., Mendes, G., de Queiroz, J.P., Coutts, Shelagh B, Ankolekar, Sandeep, Appireddy, Ramana, Arenillas, Juan F, Assis, Zarina, Bailey, Peter, Barber, Philip A, Bazan, Rodrigo, Buck, Brian H, Butcher, Ken S, Camden, Marie-Christine, Campbell, Bruce C V, Casaubon, Leanne K, Catanese, Luciana, Chatterjee, Kausik, Choi, Philip M C, Clarke, Brian, Dowlatshahi, Dar, Ferrari, Julia, Field, Thalia S, Ganesh, Aravind, Ghia, Darshan, Goyal, Mayank, Greisenegger, Stefan, Halse, Omid, Horn, Mackenzie, Hunter, Gary, Imoukhuede, Oje, Kelly, Peter J, Kennedy, James, Kleinig, Timothy J, Krishnan, Kailash, Lima, Fabricio, Mandzia, Jennifer L, Marko, Martha, Martins, Sheila O, Medvedev, George, Menon, Bijoy K, Mishra, Sachin M, Molina, Carlos, Moussaddy, Aimen, Muir, Keith W, Parsons, Mark W, Penn, Andrew M W, Pille, Arthur, Pontes-Neto, Octávio M, Roffe, Christine, Serena, Joaquin, Simister, Robert, Singh, Nishita, Spratt, Neil, Strbian, Daniel, Tham, Carol H, Wiggam, M Ivan, Williams, David J, Willmot, Mark R, Wu, Teddy, Yu, Amy Y X, Zachariah, George, Zafar, Atif, Zerna, Charlotte, and Hill, Michael D
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31. Detection and disease diagnosis trends (2017–2022) for Streptococcus suis, Glaesserella parasuis, Mycoplasma hyorhinis, Actinobacillus suis and Mycoplasma hyosynoviae at Iowa State University Veterinary Diagnostic Laboratory
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Silva, Ana Paula Serafini Poeta, Almeida, Marcelo, Michael, Alyona, Rahe, Michael C., Siepker, Christopher, Magstadt, Drew R., Piñeyro, Pablo, Arruda, Bailey L., Macedo, Nubia R., Sahin, Orhan, Gauger, Philip C., Krueger, Karen M., Mugabi, Robert, Streauslin, Jessica S., Trevisan, Giovani, Linhares, Daniel C. L., Silva, Gustavo S., Fano, Eduardo, Main, Rodger G., Schwartz, Kent J., Burrough, Eric R., Derscheid, Rachel J., Sitthicharoenchai, Panchan, and Clavijo, Maria J.
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- 2023
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32. A shotgun metagenomic analysis of the fecal microbiome in humans infected with Giardia duodenalis
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McGregor, Brett A., Razmjou, Elham, Hooshyar, Hossein, Seeger, Drew R., Golovko, Svetlana A., Golovko, Mikhail Y., Singer, Steven M., Hur, Junguk, and Solaymani-Mohammadi, Shahram
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- 2023
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33. Secretory leukocyte protease inhibitor and risk of heart failure in the Multi-Ethnic Study of Atherosclerosis
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Sawicki, Konrad Teodor, Nannini, Drew R., Bielinski, Suzette J., Larson, Nicholas B., Lloyd-Jones, Donald M., Psaty, Bruce, Taylor, Kent D., Shah, Sanjiv J., Rasmussen-Torvik, Laura J., Wilkins, John T., McNally, Elizabeth M., and Patel, Ravi B.
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- 2023
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34. Time to relapse in chronic lymphocytic leukemia and DNA-methylation-based biological age
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Nannini, Drew R., Cortese, Rene, Egwom, Peter, Palaniyandi, Senthilnathan, and Hildebrandt, Gerhard C.
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- 2023
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35. Author Correction: A local tumor microenvironment acquired super-enhancer induces an oncogenic driver in colorectal carcinoma
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Zhou, Royce W., Xu, Jia, Martin, Tiphaine C., Zachem, Alexis L., He, John, Ozturk, Sait, Demircioglu, Deniz, Bansal, Ankita, Trotta, Andrew P., Giotti, Bruno, Gryder, Berkley, Shen, Yao, Wu, Xuewei, Carcamo, Saul, Bosch, Kaitlyn, Hopkins, Benjamin, Tsankov, Alexander, Steinhagen, Randolph, Jones, Drew R., Asara, John, Chipuk, Jerry E., Brody, Rachel, Itzkowitz, Steven, Chio, Iok In Christine, Hasson, Dan, Bernstein, Emily, and Parsons, Ramon E.
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- 2023
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36. Combined PET/MR: Where Anatomical Imaging Meets Cellular Function
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DeBay, Drew R., primary and Brewer, Kimberly D., additional
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- 2023
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37. Expedited synthesis of α-amino acids by single-step enantioselective α-amination of carboxylic acids
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Ye, Chen-Xi, Dansby, Drew R., Chen, Shuming, and Meggers, Eric
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- 2023
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38. Genome-wide DNA methylation association study of recent and cumulative marijuana use in middle aged adults
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Nannini, Drew R., Zheng, Yinan, Joyce, Brian T., Kim, Kyeezu, Gao, Tao, Wang, Jun, Jacobs, David R., Schreiner, Pamela J., Yaffe, Kristine, Greenland, Philip, Lloyd-Jones, Donald M., and Hou, Lifang
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- 2023
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39. 12-Hydroxyeicosatetraenoic acid is the only enzymatically produced HETE increased under brain ischemia.
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Golovko, Mikhail Y., Seeger, Drew R., Schofield, Brennon, Besch, Derek, Kotha, Peddanna, Mansouripour, Anahita, Solaymani-Mohammadi, Shahram, and Golovko, Svetlana A.
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- 2024
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40. Twenty years later: PBDEs in fish from U.S. sites with historically extreme contamination
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La Guardia, Mark J., Mainor, Thomas M., Luellen, Drew R., Harvey, Ellen, and Hale, Robert C.
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- 2024
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41. Detection and Monitoring of Highly Pathogenic Influenza A Virus 2.3.4.4b Outbreak in Dairy Cattle in the United States
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Luis G. Giménez-Lirola, Brooklyn Cauwels, Juan Carlos Mora-Díaz, Ronaldo Magtoto, Jesús Hernández, Maritza Cordero-Ortiz, Rahul K. Nelli, Patrick J. Gorden, Drew R. Magstadt, and David H. Baum
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highly pathogenic influenza A virus ,H5N1 2.3.4.4b ,outbreak ,dairy cattle ,seroconversion ,acute phase ,Microbiology ,QR1-502 - Abstract
The emergence and spread of highly pathogenic avian influenza virus A subtype H5N1 (HP H5N1-IAV), particularly clade H5N1 2.3.4.4b, pose a severe global health threat, affecting various species, including mammals. Historically, cattle have been considered less susceptible to IAV, but recent outbreaks of H5N1-IAV 2.3.4.4b in dairy farms suggest a shift in host tropism, underscoring the urgency of expanded surveillance and the need for adaptable diagnostic tools in outbreak management. This study investigated the presence of anti-nucleoprotein (NP) antibodies in serum and milk and viral RNA in milk on dairy farms affected by outbreaks in Texas, Kansas, and Michigan using a multi-species IAV ELISA and RT-qPCR. The analysis of ELISA results from a Michigan dairy farm outbreak demonstrated a positive correlation between paired serum and milk sample results, confirming the reliability of both specimen types. Our findings also revealed high diagnostic performance during the convalescent phase (up to 96%), further improving sensitivity through serial sampling. Additionally, the evaluation of diagnostic specificity using serum and milk samples from IAV-free farms showed an excellent performance (99.6%). This study underscores the efficacy of the IAV NP-blocking ELISA for detecting and monitoring H5N1-IAV 2.3.4.4b circulation in dairy farms, whose recent emergence raises significant animal welfare and zoonotic concerns, necessitating expanded surveillance efforts.
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- 2024
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42. An experimental universal swine influenza a virus (IAV) vaccine candidate based on the M2 ectodomain (M2e) peptide does not provide protection against H1N1 IAV challenge in pigs
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Opriessnig, Tanja, Gauger, Phillip C., Filippsen Favaro, Patricia, Rawal, Gaurav, Magstadt, Drew R., Digard, Paul, Lee, Hui-Min, and Halbur, Patrick G.
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- 2024
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43. Tofacitinib Uptake by Patient-Derived Intestinal Organoids Predicts Individual Clinical Responsiveness
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Ercelen, Defne, Cen Feng, Jing Yu Carolina, Gurunathan, Sakteesh, Newell, Luke, Zhou, Chaoting, Korman, Aryeh, Jang, Kyung Ku, Hudesman, David, Jones, Drew R., Loke, P’ng, Axelrad, Jordan E., and Cadwell, Ken
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- 2024
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44. A shotgun metagenomic analysis of the fecal microbiome in humans infected with Giardia duodenalis
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Brett A. McGregor, Elham Razmjou, Hossein Hooshyar, Drew R. Seeger, Svetlana A. Golovko, Mikhail Y. Golovko, Steven M. Singer, Junguk Hur, and Shahram Solaymani-Mohammadi
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Human ,Giardiasis ,Gut ,Microbiome ,Infection ,Mucosal ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background The mechanisms underlying the clinical outcome disparity during human infection with Giardia duodenalis are still unclear. In recent years, evidence has pointed to the roles of host factors as well as parasite’s genetic heterogeneity as major contributing factors in the development of symptomatic human giardiasis. However, it remains contested as to how only a small fraction of individuals infected with G. duodenalis develop clinical gastrointestinal manifestations, whereas the majority of infected individuals remain asymptomatic. Here, we demonstrate that diversity in the fecal microbiome correlates with the clinical outcome of human giardiasis. Methods The genetic heterogeneity of G. duodenalis clinical isolates from human subjects with asymptomatic and symptomatic giardiasis was determined using a multilocus analysis approach. We also assessed the genetic proximity of G. duodenalis isolates by constructing phylogenetic trees using the maximum likelihood. Total genomic DNA (gDNA) from fecal specimens was utilized to construct DNA libraries, followed by performing paired-end sequencing using the HiSeq X platform. The Kraken2-generated, filtered FASTQ files were assigned to microbial metabolic pathways and functions using HUMAnN 3.04 and the UniRef90 diamond annotated full reference database (version 201901b). Results from HUMAnN for each sample were evaluated for differences among the biological groups using the Kruskal–Wallis non-parametric test with a post hoc Dunn test. Results We found that a total of 8/11 (72.73%) human subjects were infected with assemblage A (sub-assemblage AII) of G. duodenalis, whereas 3/11 (27.27%) human subjects in the current study were infected with assemblage B of the parasite. We also found that the parasite’s genetic diversity was not associated with the clinical outcome of the infection. Further phylogenetic analysis based on the tpi and gdh loci indicated that those clinical isolates belonging to assemblage A of G. duodenalis subjects clustered compactly together in a monophyletic clade despite being isolated from human subjects with asymptomatic and symptomatic human giardiasis. Using a metagenomic shotgun sequencing approach, we observed that infected individuals with asymptomatic and symptomatic giardiasis represented distinctive microbial diversity profiles, and that both were distinguishable from the profiles of healthy volunteers. Conclusions These findings identify a potential association between host microbiome disparity with the development of clinical disease during human giardiasis, and may provide insights into the mechanisms by which the parasite induces pathological changes in the gut. These observations may also lead to the development of novel selective therapeutic targets for preventing human enteric microbial infections. Graphical Abstract
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- 2023
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45. A village in a dish model system for population-scale hiPSC studies
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Drew R. Neavin, Angela M. Steinmann, Nona Farbehi, Han Sheng Chiu, Maciej S. Daniszewski, Himanshi Arora, Yasmin Bermudez, Cátia Moutinho, Chia-Ling Chan, Monique Bax, Mubarika Tyebally, Vikkitharan Gnanasambandapillai, Chuan E. Lam, Uyen Nguyen, Damián Hernández, Grace E. Lidgerwood, Robert M. Graham, Alex W. Hewitt, Alice Pébay, Nathan J. Palpant, and Joseph E. Powell
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Science - Abstract
Abstract The mechanisms by which DNA alleles contribute to disease risk, drug response, and other human phenotypes are highly context-specific, varying across cell types and different conditions. Human induced pluripotent stem cells are uniquely suited to study these context-dependent effects but cell lines from hundreds or thousands of individuals are required. Village cultures, where multiple induced pluripotent stem lines are cultured and differentiated in a single dish, provide an elegant solution for scaling induced pluripotent stem experiments to the necessary sample sizes required for population-scale studies. Here, we show the utility of village models, demonstrating how cells can be assigned to an induced pluripotent stem line using single-cell sequencing and illustrating that the genetic, epigenetic or induced pluripotent stem line-specific effects explain a large percentage of gene expression variation for many genes. We demonstrate that village methods can effectively detect induced pluripotent stem line-specific effects, including sensitive dynamics of cell states.
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- 2023
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46. Snakes on a plain: biotic and abiotic factors determine venom compositional variation in a wide-ranging generalist rattlesnake
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Cara F. Smith, Zachary L. Nikolakis, Kathleen Ivey, Blair W. Perry, Drew R. Schield, Neil R. Balchan, Joshua Parker, Kirk C. Hansen, Anthony J. Saviola, Todd A. Castoe, and Stephen P. Mackessy
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Adaptive trait ,Diet ,Phenotypic variation ,Proteomics ,Toxins ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Snake venoms are trophic adaptations that represent an ideal model to examine the evolutionary factors that shape polymorphic traits under strong natural selection. Venom compositional variation is substantial within and among venomous snake species. However, the forces shaping this phenotypic complexity, as well as the potential integrated roles of biotic and abiotic factors, have received little attention. Here, we investigate geographic variation in venom composition in a wide-ranging rattlesnake (Crotalus viridis viridis) and contextualize this variation by investigating dietary, phylogenetic, and environmental variables that covary with venom. Results Using shotgun proteomics, venom biochemical profiling, and lethality assays, we identify 2 distinct divergent phenotypes that characterize major axes of venom variation in this species: a myotoxin-rich phenotype and a snake venom metalloprotease (SVMP)-rich phenotype. We find that dietary availability and temperature-related abiotic factors are correlated with geographic trends in venom composition. Conclusions Our findings highlight the potential for snake venoms to vary extensively within species, for this variation to be driven by biotic and abiotic factors, and for the importance of integrating biotic and abiotic variation for understanding complex trait evolution. Links between venom variation and variation in biotic and abiotic factors indicate that venom variation likely results from substantial geographic variation in selection regimes that determine the efficacy of venom phenotypes across populations and snake species. Our results highlight the cascading influence of abiotic factors on biotic factors that ultimately shape venom phenotype, providing evidence for a central role of local selection as a key driver of venom variation.
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- 2023
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47. NEMA NU 1-2018 performance characterization and Monte Carlo model validation of the Cubresa Spark SiPM-based preclinical SPECT scanner
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Matthew E. Strugari, Drew R. DeBay, Steven D. Beyea, and Kimberly D. Brewer
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Molecular imaging ,Nuclear medicine ,SPECT ,Animal imaging instrumentation ,Monte Carlo method ,Computer-assisted image processing ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background The Cubresa Spark is a novel benchtop silicon-photomultiplier (SiPM)-based preclinical SPECT system. SiPMs in SPECT significantly improve resolution and reduce detector size compared to preclinical cameras with photomultiplier tubes requiring highly magnifying collimators. The NEMA NU 1 Standard for Performance Measurements of Gamma Cameras provides methods that can be readily applied or extended to characterize preclinical cameras with minor modifications. The primary objective of this study is to characterize the Spark according to the NEMA NU 1-2018 standard to gain insight into its nuclear medicine imaging capabilities. The secondary objective is to validate a GATE Monte Carlo simulation model of the Spark for use in preclinical SPECT studies. Methods NEMA NU 1-2018 guidelines were applied to characterize the Spark’s intrinsic, system, and tomographic performance with single- and multi-pinhole collimators. Phantoms were fabricated according to NEMA specifications with deviations involving high-resolution modifications. GATE was utilized to model the detector head with the single-pinhole collimator, and NEMA measurements were employed to tune and validate the model. Single-pinhole and multi-pinhole SPECT data were reconstructed with the Software for Tomographic Image Reconstruction and HiSPECT, respectively. Results The limiting intrinsic resolution was measured as 0.85 mm owing to a high-resolution SiPM array combined with a 3 mm-thick scintillation crystal. The average limiting tomographic resolution was 1.37 mm and 1.19 mm for the single- and multi-pinhole collimators, respectively, which have magnification factors near unity at the center of rotation. The maximum observed count rate was 15,400 cps, and planar sensitivities of 34 cps/MBq and 150 cps/MBq were measured at the center of rotation for the single- and multi-pinhole collimators, respectively. All simulated tests agreed well with measurement, where the most considerable deviations were below 7%. Conclusions NEMA NU 1-2018 standards determined that a SiPM detector mitigates the need for highly magnifying pinhole collimators while preserving detailed information in projection images. Measured and simulated NEMA results were highly comparable with differences on the order of a few percent, confirming simulation accuracy and validating the GATE model. Of the collimators initially provided with the Spark, the multi-pinhole collimator offers high resolution and sensitivity for organ-specific imaging of small animals, and the single-pinhole collimator enables high-resolution whole-body imaging of small animals.
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- 2023
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48. Time Response of Water-based Liquid Scintillator from X-ray Excitation
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Onken, Drew R., Moretti, Federico, Caravaca, Javier, Yeh, Minfang, Gann, Gabriel D. Orebi, and Bourret, Edith D.
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Physics - Instrumentation and Detectors - Abstract
Water-based liquid scintillators (WbLS) present an attractive target medium for large-scale detectors with the ability to enhance the separation of Cherenkov and scintillation signals from a single target. This work characterizes the scintillation properties of WbLS samples based on LAB/PPO liquid scintillator (LS). X-ray luminescence spectra, decay profiles, and relative light yields are measured for WbLS of varying LS concentration as well as for pure LS with a range of PPO concentrations up to 90 g/L. The scintillation properties of the WbLS are related to the precursor LAB/PPO: starting from 90 g/L PPO in LAB before synthesis, the resulting WbLS have spectroscopic properties that instead match 10 g/L PPO in LAB. This could indicate that the concentration of active PPO in the WbLS samples depends on their processing., Comment: 6 pages, 7 figures, 2 tables. Submitted to Materials Advances, a journal of the Royal Society of Chemistry
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- 2020
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49. Intestinal microbiome and metabolome signatures in patients with chronic granulomatous disease
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Chandrasekaran, Prabha, Han, Yu, Zerbe, Christa S., Heller, Theo, DeRavin, Suk See, Kreuzberg, Samantha A., Marciano, Beatriz E., Siu, Yik, Jones, Drew R., Abraham, Roshini S., Stephens, Michael C., Tsou, Amy M., Snapper, Scott, Conlan, Sean, Subramanian, Poorani, Quinones, Mariam, Grou, Caroline, Calderon, Virginie, Deming, Clayton, Leiding, Jennifer W., Arnold, Danielle E., Logan, Brent R., Griffith, Linda M., Petrovic, Aleksandra, Mousallem, Talal I., Kapoor, Neena, Heimall, Jennifer R., Barnum, Jessie L., Kapadia, Malika, Wright, Nicola, Rayes, Ahmad, Chandra, Sharat, Broglie, Larisa A., Chellapandian, Deepak, Deal, Christin L., Grunebaum, Eyal, Lim, Stephanie Si, Mallhi, Kanwaldeep, Marsh, Rebecca A., Murguia-Favela, Luis, Parikh, Suhag, Touzot, Fabien, Cowan, Morton J., Dvorak, Christopher C., Haddad, Elie, Kohn, Donald B., Notarangelo, Luigi D., Pai, Sung-Yun, Puck, Jennifer M., Pulsipher, Michael A., Torgerson, Troy R., Kang, Elizabeth M., Malech, Harry L., Segre, Julia A., Bryant, Clare E., Holland, Steven M., and Falcone, Emilia Liana
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- 2023
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50. Longitudinal dynamics of the gut microbiome and metabolome in peanut allergy development
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Chun, Yoojin, Grishin, Alexander, Rose, Rebecca, Zhao, William, Arditi, Zoe, Zhang, Lingdi, Wood, Robert A., Burks, A. Wesley, Jones, Stacie M., Leung, Donald Y.M., Jones, Drew R., Sampson, Hugh A., Sicherer, Scott H., and Bunyavanich, Supinda
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- 2023
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