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1. Divergent Genotype of Hepatitis A Virus in Alpacas, Bolivia, 2019

Author

Veith, Talitha, Beltran-Saavedra, L. Fabian, Bleicker, Tobias, Schmidt, Marie Luisa, Mollericona, Jose L., Grutzmacher, Kim, Wallace, Rob, Drexler, Jan Felix, Walzer, Christian, Jones, Terry C., Drosten, Christian, and Corman, Victor Max

Subjects
Hepatitis A -- Risk factors -- Causes of, Alpaca -- Health aspects, Genotype -- Research, Hepatitis A virus -- Identification and classification -- Genetic aspects -- Distribution, Virus research, Company distribution practices, Health
Abstract

Hepatitis A virus (HAV) causes acute hepatitis in humans worldwide; [approximately equal to] 159 million infections and [approximately equal to] 39,000 deaths were associated with HAV in 2019 (1), despite [...]

Published
2023
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4. Highly Diverse Arenaviruses in Neotropical Bats, Brazil

Author

Goes, Luiz Gustavo Bentim, Fischer, Carlo, Campos, Angelica Cristine Almeida, de Carvalho, Cristiano, Moreira-Soto, Andres, Ambar, Guilherme, da Rosa, Adriana Ruckert, de Oliveira, Debora Cardoso, Jo, Wendy Karen, Cruz-Neto, Ariovaldo P., Pedro, Wagner Andre, Queiroz, Luzia Helena, Minoprio, Paola, Durigon, Edison L., and Drexler, Jan Felix

Subjects
Bats as carriers of disease -- Health aspects, Arenaviruses -- Identification and classification -- Distribution, Bats -- Health aspects, Animals as carriers of disease -- Health aspects, Company distribution practices, Health
Abstract

Bats are prominent hosts of zoonotic RNA viruses because of immunologic, physiologic, and ecologic factors (1). The Arenaviridae family comprises 4 genera: Reptarenavirus and Hartmanivirus, whose members infect reptiles; Antennavirus, [...]

Published
2022
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5. 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author

Kuhn, Jens H, Adkins, Scott, Alioto, Daniela, Alkhovsky, Sergey V, Amarasinghe, Gaya K, Anthony, Simon J, Avšič-Županc, Tatjana, Ayllón, María A, Bahl, Justin, Balkema-Buschmann, Anne, Ballinger, Matthew J, Bartonička, Tomáš, Basler, Christopher, Bavari, Sina, Beer, Martin, Bente, Dennis A, Bergeron, Éric, Bird, Brian H, Blair, Carol, Blasdell, Kim R, Bradfute, Steven B, Breyta, Rachel, Briese, Thomas, Brown, Paul A, Buchholz, Ursula J, Buchmeier, Michael J, Bukreyev, Alexander, Burt, Felicity, Buzkan, Nihal, Calisher, Charles H, Cao, Mengji, Casas, Inmaculada, Chamberlain, John, Chandran, Kartik, Charrel, Rémi N, Chen, Biao, Chiumenti, Michela, Choi, Il-Ryong, Clegg, J Christopher S, Crozier, Ian, da Graça, John V, Dal Bó, Elena, Dávila, Alberto MR, de la Torre, Juan Carlos, de Lamballerie, Xavier, de Swart, Rik L, Di Bello, Patrick L, Di Paola, Nicholas, Di Serio, Francesco, Dietzgen, Ralf G, Digiaro, Michele, Dolja, Valerian V, Dolnik, Olga, Drebot, Michael A, Drexler, Jan Felix, Dürrwald, Ralf, Dufkova, Lucie, Dundon, William G, Duprex, W Paul, Dye, John M, Easton, Andrew J, Ebihara, Hideki, Elbeaino, Toufic, Ergünay, Koray, Fernandes, Jorlan, Fooks, Anthony R, Formenty, Pierre BH, Forth, Leonie F, Fouchier, Ron AM, Freitas-Astúa, Juliana, Gago-Zachert, Selma, Gāo, George Fú, García, María Laura, García-Sastre, Adolfo, Garrison, Aura R, Gbakima, Aiah, Goldstein, Tracey, Gonzalez, Jean-Paul J, Griffiths, Anthony, Groschup, Martin H, Günther, Stephan, Guterres, Alexandro, Hall, Roy A, Hammond, John, Hassan, Mohamed, Hepojoki, Jussi, Hepojoki, Satu, Hetzel, Udo, Hewson, Roger, Hoffmann, Bernd, Hongo, Seiji, Höper, Dirk, Horie, Masayuki, Hughes, Holly R, Hyndman, Timothy H, Jambai, Amara, Jardim, Rodrigo, Jiāng, Dàohóng, Jin, Qi, and Jonson, Gilda B

Subjects
Biotechnology, Mononegavirales, Terminology as Topic, Biological Sciences, Agricultural and Veterinary Sciences, Medical and Health Sciences, Virology
Abstract

In March 2020, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. At the genus rank, 20 new genera were added, two were deleted, one was moved, and three were renamed. At the species rank, 160 species were added, four were deleted, ten were moved and renamed, and 30 species were renamed. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.

Published
2020

6. Effectiveness of Naturally Acquired and Vaccine-Induced Immune Responses to SARS-CoV-2 Mu Variant

Author

de Oliveira-Filho, Edmilson F., Rincon-Orozco, Bladimiro, Jones-Cifuentes, Natalia, Pena-Lopez, Brigitte, Muhlemann, Barbara, Drosten, Christian, Moreira-Soto, Andres, and Drexler, Jan Felix

Subjects
Immune response -- Evaluation, Company distribution practices, Health
Abstract

Diverse SARS-CoV-2 variants have arisen during the pandemic. As of May 4, 2022, there had been 2 recognized variants of concern (VOC), Delta and Omicron, in addition to earlier emerging [...]

Published
2022
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7. Ineffectiveness of international travel restrictions to contain spread of the SARS-CoV-2 Omicron BA.1 variant: a continent-wide laboratory-based observational study from Africa

Author

Fischer, Carlo, primary, Maponga, Tongai Gibson, additional, Yadouleton, Anges, additional, Abilio, Nuro, additional, Aboce, Emmanuel, additional, Adewumi, Praise, additional, Afonso, Pedro, additional, Akorli, Jewelna, additional, Andriamandimby, Soa Fy, additional, Anga, Latifa, additional, Ashong, Yvonne, additional, Beloufa, Mohamed Amine, additional, Bensalem, Aicha, additional, Birtles, Richard, additional, Magloire Boumba, Anicet Luc, additional, Bwanga, Freddie, additional, Chaponda, Mike, additional, Chibukira, Paradzai, additional, Chico, R Matthew, additional, Chileshe, Justin, additional, Choga, Wonderful, additional, Chongwe, Gershom, additional, Cisse, Assana, additional, Cisse, Fatoumata, additional, D Alessandro, Umberto, additional, de Lamballerie, Xavier, additional, de Morais, Joana F.M., additional, Derrar, Fawzi, additional, Dia, Ndongo, additional, Diarra, Youssouf, additional, Doumbia, Lassina, additional, Drosten, Christian, additional, Dussart, Philippe, additional, Echodu, Richard, additional, Luedde, Tom, additional, Eloualid, Abdelmajid, additional, Faye, Ousmane, additional, Feldt, Torsten, additional, Fruehauf, Anna, additional, Gaseitsiwe, Simani, additional, Halatoko, Afiwa, additional, Ilouga, Pauliana-Vanessa, additional, Ismael, Nalia, additional, Jambou, Ronan, additional, Jarju, Sheikh, additional, Kamprad, Antje, additional, Katowa, Ben, additional, Kayiwa, John, additional, Kingwara, Leonard, additional, Koita, Ousmane, additional, Lacoste, Vincent, additional, Lagare, Adamou, additional, Landt, Olfert, additional, Lekana-Douki, Sonia Etenna, additional, Lekana-Douki, Jean-Bernard, additional, Iipumbu, Etuhole, additional, Loemba, Hugues, additional, Lutwama, Julius, additional, Mamadou, Santou, additional, Maman, Issaka, additional, Manyisa, Brendon, additional, Martinez, Pedro A., additional, Matoba, Japhet, additional, Mhuulu, Lusia, additional, Moreira-Soto, Andres, additional, Moyo, Sikhulile, additional, Mwangi, Judy, additional, Ndilimabaka, Nadine, additional, Nassuna, Charity Angella, additional, Ndiath, Mamadou Ousmane, additional, Nepolo, Emmanuel, additional, Njouom, Richard, additional, Nourlil, Jalal, additional, Nyanjom, Steven Ger, additional, Odari, Eddy Okoth, additional, Okeng, Alfred, additional, Ouoba, Jean Bienvenue, additional, Owusu, Michael, additional, Donkor, Irene Owusu, additional, Phadu, Karabo Kristen, additional, Phillips, Richard Odame, additional, Preiser, Wolfgang, additional, Roques, Pierre, additional, Ruhanya, Vurayai, additional, Salah, Fortune, additional, Salifou, Sourakatou, additional, Sall, Amadou Alpha, additional, Sylverken, Augustina Angelina, additional, Tagnouokam-Ngoupo, Paul Alain, additional, Tarnagda, Zekiba, additional, Tchikaya, Francis Olivier, additional, Tordo, Noel, additional, Tufa, Tafese Beyene, additional, and Drexler, Jan Felix, additional

Published
2024
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8. Serologic evidence for early SARS-CoV-2 circulation in Lima, Peru, 2020.

Author

Moreira-Soto, Andres, primary, García Mendoza, María Paquita, additional, Arotinco Garayar, Gloria Angélica, additional, Figueroa Romero, Maribel Dana, additional, Merino Sarmiento, Nancy Susy, additional, Marcelo Ñique, Adolfo Ismael, additional, Málaga-Trillo, Edward, additional, Cabezas Sánchez, César Augusto, additional, and Drexler, Jan Felix, additional

Published
2024
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10. A hepatitis B virus causes chronic infections in equids worldwide

Author

the Equid HBV Consortium, Rasche, Andrea, Lehmann, Felix, Goldmann, Nora, Nagel, Michael, Moreira-Soto, Andres, Nobach, Daniel, de Oliveira Carneiro, Ianei, Osterrieder, Nikolaus, Greenwood, Alex D., Steinmann, Eike, Lukashev, Alexander N., Schuler, Gerhard, Glebe, Dieter, and Drexler, Jan Felix

Published
2021

11. Emergence of SARS-CoV-2 Delta Variant, Benin, May--July 2021

Author

Yadouleton, Anges, Sander, Anna-Lena, Adewumi, Praise, de Oliveira Filho, Edmilson F., Tchibozo, Carine, Hounkanrin, Gildas, Rene, Keke K., Ange, Dossou, Kohoun, Rodrigue K., Nari, Ramalia Chabi, Salifou, Sourakatou, Saizonou, Raoul, Kakai, Clement G., Bedie, Sonia V., Onifade, Fattah Al, Nagel, Michael, Aissi, Melchior A. Joel, Akogbeto, Petas, Drosten, Christian, Wulf, Ben, Moreira-Soto, Andres, Djingarey, Mamoudou Harouna, Hounkpatin, Benjamin, and Drexler, Jan Felix

Subjects
Epidemics -- Statistics -- Causes of -- Benin, Health
Abstract

Numerous genetic variants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have emerged globally since the start of the coronavirus disease (COVID-19) pandemic (https://cov-lineages.org). By September 2021, the World Health [...]

Published
2022
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12. Mutations Associated with SARS-CoV-2 Variants of Concern, Benin, Early 2021

Author

Sander, Anna-Lena, Yadouleton, Anges, de Oliveira Filho, Edmilson F., Tchibozo, Carine, Hounkanrin, Gildas, Badou, Yvette, Adewumi, Praise, Rene, Keke K., Ange, Dossou, Sourakatou, Salifou, Sedjro, Eclou, Aissi, Melchior A. Joel, Fidelia, Hinson, Djingarey, Mamoudou Harouna, Nagel, Michael, Jo, Wendy Karen, Moreira-Soto, Andres, Drosten, Christian, Landt, Olfert, Corman, Victor Max, Hounkpatin, Benjamin, and Drexler, Jan Felix

Subjects
Gene mutations -- Research, Epidemics -- Causes of -- Benin, Virus research, Health
Abstract

Genomic surveillance is key to elucidate coronavirus disease (COVID-19) transmission chains and to monitor emerging severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants associated with partial or complete immune escape [...]

Published
2021
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13. Epidemiological, virological and clinical characterization of a Dengue/Zika outbreak in the Caribbean region of Costa Rica 2017-2018.

Author

Soto-Garita, Claudio, Murillo, Tatiana, Chávez-Peraza, Ileana, Campos-Ávila, Josué, Prado-Hidalgo, Grace, Drexler, Jan Felix, Moreira-Soto, Andres, and Corrales-Aguilar, Eugenia

Subjects
DENGUE, MEDICAL personnel, HEALTH facilities, ARBOVIRUS diseases, LEUKOCYTE count, MOSQUITO control, IMMUNOGLOBULIN M, FENITROTHION
Abstract

The increase in incidence and geographical expansion of viruses transmitted by the Aedes mosquitoes, such as dengue (DENV) and zika (ZIKV) in the Americas, represents a burden for healthcare systems in tropical and subtropical regions. These and other under-detected arboviruses co-circulate in Costa Rica, adding additional complexity to their management due to their shared epidemiological behavior and similarity of symptoms in early stages. Since diagnostics of febrile illness is mostly based on clinical symptoms alone, we gathered acute-phase serum and urine from 399 samples of acute dengue-like cases from two healthcare facilities of Costa Rica, during an outbreak of arboviruses from July 2017 to May 2018, and tested them using molecular and serological methods. The analyses showed that of the clinically presumptive arbovirus cases that were reported, only 39.4% (n=153) of the samples were confirmed positive by RT-PCR to be DENV (DENV (10.3%), CHIKV (0.2%), ZIKV (27.3%), or mixed infections (1.5%). RT-PCR for other alphaviruses and flaviviruses, and PCR for Leptospira sp were negative. Furthermore, to assess flavivirus positivity in post-acute patients, the negative sera were tested against Dengue-IgM. 20% of sera were found positive, confounding even more the definitive number of cases, and emphasizing the need of several distinct diagnostic tools for accurate diagnostics. Molecular characterization of the prM and E genes from isolated viruses revealed that the American/Asian genotype of DENV-2 and the Asian lineage of ZIKV were circulating during this outbreak. Two different clades of DENV-2 American/Asian genotype were identified to co-circulate in the same region and a difference in the platelet and leukocyte count was noted between people infected with each clade, suggesting a putative distinct virulence. Our study sheds light on the necessity for healthcare strategies in managing arbovirus outbreaks, emphasizing the importance of comprehensive molecular and serological diagnostic approaches, as well as molecular characterization. This approach aids in enhancing our understanding of the clinical and epidemiological aspects of arboviral diseases during outbreaks. Our research highlights the need to strengthen training programs for health professionals and the need to increase research-based on laboratory evidence for diagnostic accuracy, guidance, development and implementation of public health interventions and epidemiological surveillance. [ABSTRACT FROM AUTHOR]

Published
2024
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14. Ecologic Determinants of West Nile Virus Seroprevalence among Equids, Brazil

Author

de Oliveira-Filho, Edmilson F., Fischer, Carlo, Berneck, Beatrice Sarah, Carneiro, Ianei O., Kuhne, Arne, de Almeida Campos, Angelica C., Ribas, Jorge R.L., Netto, Eduardo Martins, Franke, Carlos Roberto, Ulbert, Sebastian, and Drexler, Jan Felix

Subjects
West Nile fever -- Statistics -- Risk factors -- Environmental aspects, Equids -- Statistics -- Health aspects, Zoonoses -- Statistics -- Risk factors -- Environmental aspects, Health
Abstract

West Nile virus (WNV) is a widely distributed arthropodborne flavivirus transmitted predominantly by Culex mosquitoes (1). Among infected persons, [approximately equal to] 20% show clinical signs, such as mild fever, [...]

Published
2021
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19. Highly diversified shrew hepatitis B viruses corroborate ancient origins and divergent infection patterns of mammalian hepadnaviruses

Author

Rasche, Andrea, Lehmann, Felix, König, Alexander, Goldmann, Nora, Corman, Victor M., Moreira-Soto, Andres, Geipel, Andreas, van Riel, Debby, Vakulenko, Yulia A., Sander, Anna-Lena, Niekamp, Hauke, Kepper, Ramona, Schlegel, Mathias, Akoua-Koffi, Chantal, Souza, Breno F. C. D., Sahr, Foday, Olayemi, Ayodeji, Schulze, Vanessa, Petraityte-Burneikiene, Rasa, Kazaks, Andris, Lowjaga, Kira A. A. T., Geyer, Joachim, Kuiken, Thijs, Drosten, Christian, Lukashev, Alexander N., Fichet-Calvet, Elisabeth, Ulrich, Rainer G., Glebe, Dieter, and Drexler, Jan Felix

Published
2019

20. Venezuelan Equine Encephalitis Complex Alphavirus in Bats, French Guiana

Author

Fischer, Carlo, Pontier, Dominique, Filippi-Codaccioni, Ondine, Pons, Jean-Batiste, Postigo-Hidalgo, Ignacio, Duhayer, Jeanne, Brunink, Sebastian, and Drexler, Jan Felix

Subjects
Equine encephalomyelitis -- Analysis, RNA viruses -- Analysis, Bats -- Diseases, Health
Abstract

Venezuelan equine encephalitis complex alphaviruses (VEEVs) are arthropod-borne viruses (arboviruses) (2,2). Most VEE complex viruses can infect livestock and humans, causing predominantly acute febrile illness; some VEE complex viruses, including [...]

Published
2021
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21. Limited Specificity of Serologic Tests for SARS-CoV-2 Antibody Detection, Benin

Author

Yadouleton, Anges, Sander, Anna-Lena, Moreira-Soto, Andres, Tchibozo, Carine, Hounkanrin, Gildas, Badou, Yvette, Fischer, Carlo, Krause, Nina, Akogbeto, Petas, de Oliveira Filho, Edmilson F., Dossou, Anges, Brunink, Sebastian, Aissi, Melchior A. Joel, Djingarey, Mamoudou Harouna, Hounkpatin, Benjamin, Nagel, Michael, and Drexler, Jan Felix

Subjects
Epidemics -- Control -- Benin, Serodiagnosis -- Evaluation, Medical care -- Quality management, Health
Abstract

Since its emergence in China late 2019, coronavirus disease (COVID-19) had caused >41 million cases and >1.1 million deaths globally by October 2020, according to the World Health Organization (https://www.who. [...]

Published
2021
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22. Assessing vulnerability for future Zika virus outbreaks using seroprevalence data and environmental suitability maps.

Author

Roell, Yannik, Pezzi, Laura, Lozano-Parra, Anyela, Olson, Daniel, Messina, Jane, Quandelacy, Talia, Drexler, Jan Felix, Brady, Oliver, Karimzadeh, Morteza, and Jaenisch, Thomas

Subjects
ZIKA virus, ENVIRONMENTAL mapping, SEROPREVALENCE, HERD immunity, GEOSPATIAL data
Abstract

The 2015–17 Zika virus (ZIKV) epidemic in the Americas subsided faster than expected and evolving population immunity was postulated to be the main reason. Herd immunization is suggested to occur around 60–70% seroprevalence, depending on demographic density and climate suitability. However, herd immunity was only documented for a few cities in South America, meaning a substantial portion of the population might still be vulnerable to a future Zika virus outbreak. The aim of our study was to determine the vulnerability of populations to ZIKV by comparing the environmental suitability of ZIKV transmission to the observed seroprevalence, based on published studies. Using a systematic search, we collected seroprevalence and geospatial data for 119 unique locations from 37 studies. Extracting the environmental suitability at each location and converting to a hypothetical expected seroprevalence, we were able to determine the discrepancy between observed and expected. This discrepancy is an indicator of vulnerability and divided into three categories: high risk, low risk, and very low risk. The vulnerability was used to evaluate the level of risk that each location still has for a ZIKV outbreak to occur. Of the 119 unique locations, 69 locations (58%) fell within the high risk category, 47 locations (39%) fell within the low risk category, and 3 locations (3%) fell within the very low risk category. The considerable heterogeneity between environmental suitability and seroprevalence potentially leaves a large population vulnerable to future infection. Vulnerability seems to be especially pronounced at the fringes of the environmental suitability for ZIKV (e.g. Sao Paulo, Brazil). The discrepancies between observed and expected seroprevalence raise the question: "why did the ZIKV epidemic stop with large populations unaffected?". This lack of understanding also highlights that future ZIKV outbreaks currently cannot be predicted with confidence. Author summary: After the ZIKV epidemic in the Americas, it remains unclear if and when a resurgence of the ZIKV could occur. We used publicly available data on environmental suitability of transmission as well as seroprevalence data to estimate future vulnerability to ZIKV outbreaks. Our results show a considerable discrepancy between the observed seroprevalence, from past exposure to the virus on one hand, and the environmental suitability, which raised the question why the epidemic subsided before reaching the expected herd immunization threshold in many locations. This lack of understanding also highlights that future ZIKV outbreaks currently cannot be predicted with confidence. Although we cannot provide an answer to the question why the epidemic subsided when it did, we present a better quantification and geospatial mapping of the potential vulnerability to future outbreaks, which will be crucial for decision makers to prepare for future outbreaks. [ABSTRACT FROM AUTHOR]

Published
2024
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23. Virological evidence of the impact of non-pharmaceutical interventions against COVID-19 in Ecuador, a resource-limited setting

Author

Moreira-Soto, Andres, primary, Bruno, Alfredo, additional, de Mora, Doménica, additional, Paez, Michelle, additional, Garces, Jimmy, additional, Wulf, Ben, additional, Sander, Anna-Lena, additional, Olmedo, Maritza, additional, Basantes Mantilla, Maria José, additional, Gonzalez Gonzalez, Manuel, additional, Orlando, Solon Alberto, additional, Salgado Cisneros, Silvia, additional, Zevallos, Juan Carlos, additional, and Drexler, Jan Felix, additional

Published
2023
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24. Virulent Brucella nosferati infecting Desmodus rotundus has emerging potential due to the broad foraging range of its bat host for humans and wild and domestic animals

Author

Hernández-Mora, Gabriela, primary, Chacón-Díaz, Carlos, additional, Moreira-Soto, Andres, additional, Barrantes-Granados, Osvaldo, additional, Suárez-Esquivel, Marcela, additional, Viquez-Ruiz, Eunice, additional, Barquero-Calvo, Elías, additional, Ruiz-Villalobos, Nazareth, additional, Hidalgo-Montealegre, Daniela, additional, González-Barrientos, Rocío, additional, Demeter, Elena A., additional, Estrella-Morales, Josimar, additional, Zúñiga-Pereira, Ana-Mariel, additional, Quesada-Gómez, Carlos, additional, Chaves-Olarte, Esteban, additional, Lomonte, Bruno, additional, Guzmán-Verri, Caterina, additional, Drexler, Jan Felix, additional, and Moreno, Edgardo, additional

Published
2023
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26. Zika Virus Circulation in Mali

Author

Diarra, Issa, Nurtop, Elif, Sangare, Abdoul Karim, Sagara, Issaka, Pastorino, Boris, Sacko, Souleymane, Zeguime, Amatigue, Coulibaly, Drissa, Fofana, Bakary, Gallian, Pierre, Priet, Stephane, Drexler, Jan Felix, Failloux, Anna-Bella, Dabo, Abdoulaye, Thera, Mahamadou Ali, Djimde, Abdoulaye, Kouriba, Bourema, Cauchemez, Simon, de Lamballerie, Xavier, Hoze, Nathanael, and Doumbo, Ogobara K.

Subjects
Enzyme-linked immunosorbent assay -- Health aspects -- Surveys, Medical research -- Health aspects -- Surveys, Zika virus -- Surveys -- Health aspects, Infection -- Surveys -- Health aspects, Blood donation -- Health aspects -- Surveys, Women, Health
Abstract

Zika virus (ZIKV) is an arbovirus (genus Flavivirus; enveloped positive-stranded RNA virus) (1). The isolation of ZIKV took place in 1947 from a caged sentinel rhesus monkey during a yellow [...]

Published
2020
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27. Cross-Protection of Dengue Virus Infection against Congenital Zika Syndrome, Northeastern Brazil

Author

Pedroso, Celia, Fischer, Carlo, Feldmann, Marie, Sarno, Manoel, Luz, Estela, Moreira-Soto, Andres, Cabral, Renata, Netto, Eduardo Martins, Brites, Carlos, Kummerer, Beate M., and Drexler, Jan Felix

Subjects
Birth defects, Zika virus, Genetic disorders, Genomics, Dengue virus, Genomes, Newborn infants, Health
Abstract

The 2015-2016 Zika epidemic in Brazil was associated with congenital malformations summarized as congenital Zika syndrome (CZS) (1-6). As a consequence, abortion requests and pregnancy delays increased dramatically in Brazil [...]

Published
2019

31. Seroprevalence of Dengue, Chikungunya and Zika at the epicenter of the congenital microcephaly epidemic in Northeast Brazil: A population-based survey

Author

Braga, Cynthia, primary, Martelli, Celina M. T., additional, Souza, Wayner V., additional, Luna, Carlos F., additional, Albuquerque, Maria de Fatima P. M., additional, Mariz, Carolline A., additional, Morais, Clarice N. L., additional, Brito, Carlos A. A., additional, Melo, Carlos Frederico C. A., additional, Lins, Roberto D., additional, Drexler, Jan Felix, additional, Jaenisch, Thomas, additional, Marques, Ernesto T. A., additional, and Viana, Isabelle F. T., additional

Published
2023
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34. A novel hepatitis B virus species discovered in capuchin monkeys sheds new light on the evolution of primate hepadnaviruses

Author

de Carvalho Dominguez Souza, Breno Frederico, König, Alexander, Rasche, Andrea, de Oliveira Carneiro, Ianei, Stephan, Nora, Corman, Victor Max, Roppert, Pia Luise, Goldmann, Nora, Kepper, Ramona, Müller, Simon Franz, Völker, Christof, de Souza, Alex Junior Souza, Gomes-Gouvêa, Michele Soares, Moreira-Soto, Andrés, Stöcker, Andreas, Nassal, Michael, Franke, Carlos Roberto, Rebello Pinho, João Renato, Soares, Manoel do Carmo Pereira, Geyer, Joachim, Lemey, Philippe, Drosten, Christian, Netto, Eduardo Martins, Glebe, Dieter, and Drexler, Jan Felix

Published
2018
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35. Bat Influenza A(HL18NL11) Virus in Fruit Bats, Brazil

Author

Campos, Angelica Cristine Almeida, Goes, Luiz Gustavo Bentim, Moreira-Soto, Andres, de Carvalho, Cristiano, Ambar, Guilherme, Sander, Anna-Lena, Fischer, Carlo, da Rosa, Adriana Ruckert, de Oliveira, Debora Cardoso, Kataoka, Ana Paula G., Pedro, Wagner Andre, Martorelli, Luzia Fatima A., Queiroz, Luzia Helena, Cruz-Neto, Ariovaldo P., Durigon, Edison Luiz, and Drexler, Jan Felix

Subjects
Amino acids -- Health aspects, Zoonoses -- Health aspects, Influenza -- Health aspects, Fruits (Food) -- Health aspects, Genomics -- Health aspects, Intestines, Genes, Infection, Pathogenic microorganisms, Health
Abstract

Influenza A viruses are major causes of human disease and are predominantly maintained in avian reservoirs (1). The segmented influenza A genome facilitates reassortment events in birds or intermediate hosts, [...]

Published
2019
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36. Differential Shedding and Antibody Kinetics of Zika and Chikungunya Viruses, Brazil

Author

Bozza, Fernando A., Moreira-Soto, Andres, Rockstroh, Alexandra, Fischer, Carlo, Nascimento, Alessandra D., Calheiros, Andrea S., Drosten, Christian, Bozza, Patricia T., Souza, Thiago Moreno L., Ulbert, Sebastian, and Drexler, Jan Felix

Subjects
Dengue virus -- Health aspects, Zika virus -- Health aspects, Infection -- Health aspects, Antibodies -- Health aspects, Immune response, Recurrence (Disease), Medical tests, Antigens, Health
Abstract

In 2013, Zika virus and chikungunya virus (CHIKV) emerged in Latin America (1,2). Their overlapping symptoms challenge accurate diagnosis on the basis of clinical manifestations (3). Direct Zika virus and [...]

Published
2019
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38. Virological evidence of the impact of non-pharmaceutical interventions against COVID-19 in a resource-limited setting

Author

Moreira-Soto, Andres, primary, Bruno, Alfredo, additional, de Mora, Doménica, additional, Paez, Michelle, additional, Garces, Jimmy, additional, Wulf, Ben, additional, Sander, Anna-Lena, additional, Olmedo, Maritza, additional, Basantes Mantilla, Maria José, additional, Gonzalez, Manuel, additional, Nárvaez, Alberto Orlando, additional, Salgado, Silvia, additional, Zevallos, Juan Carlos, additional, and Drexler, Jan Felix, additional

Published
2023
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39. Link of a ubiquitous human coronavirus to dromedary camels

Author

Corman, Victor M., Eckerle, Isabella, Memish, Ziad A., Liljander, Anne M., Dijkman, Ronald, Jonsdottir, Hulda, Ngeiywa, Kisi J. Z. Juma, Kamau, Esther, Younan, Mario, Masri, Malakita Al, Assiri, Abdullah, Gluecks, Ilona, Musa, Bakri E., Meyer, Benjamin, Müller, Marcel A., Hilali, Mosaad, Bornstein, Set, Wernery, Ulrich, Thiel, Volker, Jores, Joerg, Drexler, Jan Felix, and Drosten, Christian

Published
2016

43. External Quality Assessment for Zika Virus Molecular Diagnostic Testing, Brazil

Author

Fischer, Carlo, Pedroso, Celia, Mendrone, Alfredo, Jr., de Filippis, Ana Maria Bispo, Vallinoto, Antonio Carlos Rosario, Ribeiro, Bergmann Morais, Durigon, Edison Luiz, Marques, Ernesto T.A., Jr., Campos, Gubio S., Viana, Isabelle F.T., Levi, Jose Eduardo, Scarpelli, Luciano Cesar, Nogueira, Mauricio Lacerda, de Souza Bastos, Michele, Souza, Nathalia C. Santiago, Khouri, Ricardo, Lira, Sanny M. Costa, Komninakis, Shirley Vasconcelos, Baronti, Cecile, Charrel, Remi N., Kummerer, Beate M., Drosten, Christian, Brites, Carlos, de Lamballerie, Xavier, Niedrig, Matthias, Netto, Eduardo Martins, and Drexler, Jan Felix

Subjects
Medical tests -- Health aspects -- Usage, Patient care -- Analysis, Zika virus -- Research -- Health aspects -- Causes of, Health, World Health Organization
Abstract

The catastrophic Zika virus outbreak in the Americas has affected millions of persons. Brazil was the most affected country and reported [approximately equal to] 95% of all cases of suspected [...]

Published
2018
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44. Lineage-Specific Real-Time Reverse Transcription PCR for Yellow Fever Virus Outbreak Surveillance, Brazil

Author

Fischer, Carlo, Torres, Maria C., Patel, Pranav, Moreira-Soto, Andres, Gould, Ernest A., Charrel, Remi N., de Lamballerie, Xavier, Nogueira, Rita Maria Ribeiro, Sequeira, Patricia C., Rodrigues, Cintia D.S., Kummerer, Beate M., Drosten, Christian, Landt, Olfert, de Filippis, Ana Maria Bispo, and Drexler, Jan Felix

Subjects
Polymerase chain reaction, Yellow fever -- Development and progression, Transcription (Genetics), Vaccination, Health
Abstract

Yellow fever virus (YFV) is a mosquitoborne member of the genus Flavivirus within the family Flaviviridae (online Technical Appendix Figure 1, panel A, https://wwwnc.cdc.gov/EID/article/23/11/17-1131-Techapp1.pdf) that is endemic to Africa and [...]

Published
2017
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45. Retraction

Author

Fischer, Carlo, primary, Maponga, Tongai Gibson, additional, Yadouleton, Anges, additional, Abílio, Nuro, additional, Aboce, Emmanuel, additional, Adewumi, Praise, additional, Afonso, Pedro, additional, Akorli, Jewelna, additional, Andriamandimby, Soa Fy, additional, Anga, Latifa, additional, Ashong, Yvonne, additional, Beloufa, Mohamed Amine, additional, Bensalem, Aicha, additional, Birtles, Richard, additional, Boumba, Anicet Luc Magloire, additional, Bwanga, Freddie, additional, Chaponda, Mike, additional, Chibukira, Paradzai, additional, Chico, R. Matthew, additional, Chileshe, Justin, additional, Chongwe, Gershom, additional, Cissé, Assana, additional, D’Alessandro, Umberto, additional, de Lamballerie, Xavier Nicolas, additional, de Morais, Joana F. M., additional, Derrar, Fawzi, additional, Dia, Ndongo, additional, Diarra, Youssouf, additional, Doumbia, Lassina, additional, Drosten, Christian, additional, Dussart, Philippe, additional, Echodu, Richard, additional, Eggers, Yannik, additional, Eloualid, Abdelmajid, additional, Faye, Ousmane, additional, Feldt, Torsten, additional, Frühauf, Anna, additional, Halatoko, Afiwa, additional, Ilouga, Pauliana-Vanessa, additional, Ismael, Nalia, additional, Jambou, Ronan, additional, Jarju, Sheikh, additional, Kamprad, Antje, additional, Katowa, Ben, additional, Kayiwa, John, additional, King’wara, Leonard, additional, Koita, Ousmane, additional, Lacoste, Vincent, additional, Lagare, Adamou, additional, Landt, Olfert, additional, Lekana-Douki, Sonia Etenna, additional, Lekana-Douki, Jean-Bernard, additional, Iipumbu, Etuhole, additional, Loemba, Hugues, additional, Lutwama, Julius, additional, Mamadou, Santou, additional, Maman, Issaka, additional, Manyisa, Brendon, additional, Martinez, Pedro A., additional, Matoba, Japhet, additional, Mhuulu, Lusia, additional, Moreira-Soto, Andres, additional, Mwangi, Judy, additional, N’dilimabaka, Nadine, additional, Nassuna, Charity Angella, additional, Ndiath, Mamadou Ousmane, additional, Nepolo, Emmanuel, additional, Njouom, Richard, additional, Nourlil, Jalal, additional, Nyanjom, Steven Ger, additional, Odari, Eddy Okoth, additional, Okeng, Alfred, additional, Ouoba, Jean Bienvenue, additional, Owusu, Michael, additional, Donkor, Irene Owusu, additional, Phadu, Karabo Kristen, additional, Phillips, Richard Odame, additional, Preiser, Wolfgang, additional, Ruhanya, Vurayai, additional, Salah, Fortune, additional, Salifou, Sourakatou, additional, Sall, Amadou Alpha, additional, Sylverken, Augustina Angelina, additional, Tagnouokam-Ngoupo, Paul Alain, additional, Tarnagda, Zekiba, additional, Tchikaya, Francis Olivier, additional, Tufa, Tafese Beyene, additional, and Drexler, Jan Felix, additional

Published
2022
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47. Gradual emergence followed by exponential spread of the SARS-CoV-2 Omicron variant in Africa

Author

Fischer, Carlo, primary, Maponga, Tongai Gibson, additional, Yadouleton, Anges, additional, Abílio, Nuro, additional, Aboce, Emmanuel, additional, Adewumi, Praise, additional, Afonso, Pedro, additional, Akorli, Jewelna, additional, Andriamandimby, Soa Fy, additional, Anga, Latifa, additional, Ashong, Yvonne, additional, Beloufa, Mohamed Amine, additional, Bensalem, Aicha, additional, Birtles, Richard, additional, Boumba, Anicet Luc Magloire, additional, Bwanga, Freddie, additional, Chaponda, Mike, additional, Chibukira, Paradzai, additional, Chico, R. Matthew, additional, Chileshe, Justin, additional, Chongwe, Gershom, additional, Cissé, Assana, additional, D’Alessandro, Umberto, additional, de Lamballerie, Xavier Nicolas, additional, de Morais, Joana F. M., additional, Derrar, Fawzi, additional, Dia, Ndongo, additional, Diarra, Youssouf, additional, Doumbia, Lassina, additional, Drosten, Christian, additional, Dussart, Philippe, additional, Echodu, Richard, additional, Eggers, Yannik, additional, Eloualid, Abdelmajid, additional, Faye, Ousmane, additional, Feldt, Torsten, additional, Frühauf, Anna, additional, Halatoko, Afiwa, additional, Ilouga, Pauliana-Vanessa, additional, Ismael, Nalia, additional, Jambou, Ronan, additional, Jarju, Sheikh, additional, Kamprad, Antje, additional, Katowa, Ben, additional, Kayiwa, John, additional, King’wara, Leonard, additional, Koita, Ousmane, additional, Lacoste, Vincent, additional, Lagare, Adamou, additional, Landt, Olfert, additional, Lekana-Douki, Sonia Etenna, additional, Lekana-Douki, Jean-Bernard, additional, Iipumbu, Etuhole, additional, Loemba, Hugues, additional, Lutwama, Julius, additional, Mamadou, Santou, additional, Maman, Issaka, additional, Manyisa, Brendon, additional, Martinez, Pedro A., additional, Matoba, Japhet, additional, Mhuulu, Lusia, additional, Moreira-Soto, Andres, additional, Mwangi, Judy, additional, N´dilimabaka, Nadine, additional, Nassuna, Charity Angella, additional, Ndiath, Mamadou Ousmane, additional, Nepolo, Emmanuel, additional, Njouom, Richard, additional, Nourlil, Jalal, additional, Nyanjom, Steven Ger, additional, Odari, Eddy Okoth, additional, Okeng, Alfred, additional, Ouoba, Jean Bienvenue, additional, Owusu, Michael, additional, Owusu Donkor, Irene, additional, Phadu, Karabo Kristen, additional, Phillips, Richard Odame, additional, Preiser, Wolfgang, additional, Ruhanya, Vurayai, additional, Salah, Fortune, additional, Salifou, Sourakatou, additional, Sall, Amadou Alpha, additional, Sylverken, Augustina Angelina, additional, Tagnouokam-Ngoupo, Paul Alain, additional, Tarnagda, Zekiba, additional, Tchikaya, Francis Olivier, additional, Tufa, Tafese Beyene, additional, and Drexler, Jan Felix, additional

Published
2022
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48. Highly Diverse Arenaviruses in Neotropical Bats, Brazil

Author

Bentim Góes, Luiz Gustavo, primary, Fischer, Carlo, additional, Almeida Campos, Angélica Cristine, additional, de Carvalho, Cristiano, additional, Moreira-Soto, Andrés, additional, Ambar, Guilherme, additional, Ruckert da Rosa, Adriana, additional, de Oliveira, Debora Cardoso, additional, Jo, Wendy Karen, additional, Cruz-Neto, Ariovaldo P., additional, Pedro, Wagner André, additional, Queiroz, Luzia Helena, additional, Minoprio, Paola, additional, Durigon, Edison L., additional, and Drexler, Jan Felix, additional

Published
2022
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49. Genomic Characterization and Antimicrobial Susceptibility of Dromedary-Associated Staphylococcaceae from the Horn of Africa

Author

Akarsu, Hatice, primary, Liljander, Anne, additional, Younan, Mario, additional, Brodard, Isabelle, additional, Overesch, Gudrun, additional, Glücks, Ilona, additional, Labroussaa, Fabien, additional, Kuhnert, Peter, additional, Perreten, Vincent, additional, Monecke, Stefan, additional, Drexler, Jan Felix, additional, Corman, Victor Max, additional, Falquet, Laurent, additional, and Jores, Joerg, additional

Published
2022
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50. Evolutionary origins of hepatitis A virus in small mammals

Author

the Hepatovirus Ecology Consortium, Drexler, Jan Felix, Corman, Victor M., Lukashev, Alexander N., van den Brand, Judith M. A., Gmyl, Anatoly P., Brünink, Sebastian, Rasche, Andrea, Seggewiβ, Nicole, Feng, Hui, Leijten, Lonneke M., Vallo, Peter, Kuiken, Thijs, Dotzauer, Andreas, Ulrich, Rainer G., Lemon, Stanley M., and Drosten, Christian

Published
2015

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