42 results on '"Dudek MK"'
Search Results
2. Understanding dynamics and mechanisms: general discussion.
- Author
-
Ashbrook SE, Blahut J, Blanc F, Brammer L, Charpentier T, Chen CH, Dracinsky M, Dudek MK, Fellowes T, Fleischer CH, Gervais C, Goodwin AL, Goward GR, Griffin J, Griffith KJ, Harper AF, Harris KDM, Hodgkinson P, Holmes JB, Hope MA, Hughes CE, Khimyak YZ, Köcher SS, Laurencin D, Morris AJ, Mueller LJ, Nilsson Lill SO, Ongkiko MA, Owen C, Pham TN, Price SL, Thureau P, Torodii D, and Zorin V
- Published
- 2025
- Full Text
- View/download PDF
3. Big data and simulations in NMR crystallography: general discussion.
- Author
-
Ashbrook SE, Beran GJO, Blahut J, Blanc F, Bornes C, Brammer L, Brown SP, Charpentier T, Dračínský M, Dudek MK, Emsley L, Fleischer CH 3rd, Goodwin AL, Harper AF, Harris KDM, Hodgkinson P, Hope MA, Hughes CE, Köcher SS, Li Z, Morris AJ, Mueller LJ, Nilsson Lill SO, Price SL, Rhodes BJ, and Torodii D
- Published
- 2025
- Full Text
- View/download PDF
4. Generating models that describe complex disorder: general discussion.
- Author
-
Ashbrook SE, Blanc F, Brown SP, Charpentier T, Dracinsky M, Dudek MK, Emsley L, Gervais C, Goodwin AL, Goward GR, Griffin J, Harper AF, Harris KDM, Hodgkinson P, Holmes JB, Hope MA, Hughes CE, Köcher SS, Li Z, Nilsson Lill SO, Merlet C, Morris AJ, Mueller LJ, Price SL, Rhodes BJ, and Seleghini HS
- Published
- 2025
- Full Text
- View/download PDF
5. Physicochemical and structural analysis of N-phenylacetyl-L-prolylglycine ethyl ester (Noopept) - An active pharmaceutical ingredient with nootropic activity.
- Author
-
Araj SK, Szeleszczuk Ł, Gubica T, Zielińska-Pisklak M, Bethanis K, Christoforides E, Dudek MK, and Pisklak DM
- Subjects
- Magnetic Resonance Spectroscopy methods, Dipeptides chemistry, Molecular Structure, X-Ray Diffraction methods, Nootropic Agents chemistry, Nootropic Agents pharmacology
- Abstract
N-Phenylacetyl-L-prolylglycine ethyl ester (Noopept, GVS-111, omberacetam) is an orally available active pharmaceutical ingredient (API), with neuroprotective properties and ability to enhance cognitive function. It belongs to nootropic family of drugs and is included in the group of racetams, although its chemical structure is quite different than the other compounds from this group, including the most popular one - piracetam. The mechanism of action of this API is multifaced and is considered to be involving modulation of various neurotransmitter systems within the brain. Despite the significant amount of works devoted to the pharmacodynamics of Noopept, very little is known about its structural and physicochemical properties. Therefore, the aim of current study was to investigate this API in a very thorough way. In this work, the detailed physicochemical analysis of Noopept has been done using TGA/DSC,
1 H and13 C liquid state NMR,13 C CP/MAS NMR, SEM, SCXRD, and PXRD. Additionally, quantum chemical DFT computations under periodic boundary conditions, using CASTEP, were conducted to facilitate the analysis of experimental results. Besides, we've performed a polymorphism screening of this molecule., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2025
- Full Text
- View/download PDF
6. SCXRD, CSP-NMRX and microED in the quest for three elusive polymorphs of meloxicam.
- Author
-
Jeziorna A, Malinska M, Sugden I, Paluch P, Dolot R, and Dudek MK
- Abstract
Crystal structure determination is a crucial aspect of almost every branch of the chemical sciences, bringing us closer to understanding crystallization, polymorphism, phase transitions, and the relationship between a structure and its physicochemical and functional properties. Unfortunately, many molecules notoriously crystallize as microcrystalline powders, providing a significant challenge in establishing their structures. In this work, we describe the crystal structure determination of three elusive polymorphs of the anti-inflammatory drug meloxicam (MLX) using three approaches, of which only one was successful for each crystal phase. Single-crystal X-ray diffraction allowed us to solve the structure of MLX-III, MLX-II was solved by a combination of NMR crystallography and crystal structure prediction (CSP) calculations, and MLX-V (Z' = 4 polymorph) was only solvable using electron diffraction. By considering the factors influencing the choice of crystal structure determination method, we showcase their strengths and weaknesses as an indication of their applicability. Additionally, we discuss the issues encountered in the CSP search for MLX-II and MLX-III (both Z' = 2 polymorphs) which turned out to be computationally elusive, in addition to being so in crystallization experiments. This indicates a complex crystal energy landscape for MLX and hints at more general challenges in CSP., (open access.)
- Published
- 2025
- Full Text
- View/download PDF
7. Mechanochemical Transformations of Pharmaceutical Cocrystals: Polymorphs and Coformer Exchange.
- Author
-
Trzeciak K, Dudek MK, and Potrzebowski MJ
- Abstract
Transformations of solid samples under solvent-free or minimal solvent conditions set the future trend and define a modern strategy for the production of new materials. Of the various technologies tested in recent years, the mechanochemical approach seems to be the most promising for economic and ecological reasons. The aim of this review article is to present the current state of art in solid state research on binary systems, which have found numerous applications in the pharmaceutical and materials science industries. This article is divided into three sections. In the first part, we describe the new equipment improvements, which include the innovative application of thermo-mechanochemistry, sono-mechanochemistry, photo-mechanochemistry, electro-mechanochemistry, as well as resonant acoustic mixing (RAM), and transformation under high-speed sample spinning ("SpeedMixing"). A brief description of techniques dedicated to ex-situ and in-situ studies of progress and the mechanism of solid matter transformation (PXRD, FTIR, Raman and NMR spectroscopy) is presented. In the second section, we discuss the problem of cocrystal polymorphism highlighting the issue related with correlation between mechanochemical parameters (time, temperature, energy, molar ratio, solvent used as a liquid assistant, surface energy, crystal size, crystal shape) and preference for the formation of requested polymorph. The last part is devoted to the description of the processes of coformer exchange in binary systems forced by mechanical and/or thermal stimuli. The influence of the thermodynamic factor on the selection of the best-suited partner for the formation of a two-component stable structure is presented., (© 2024 Wiley-VCH GmbH.)
- Published
- 2024
- Full Text
- View/download PDF
8. Conformational preferences of cocoa oligomeric proanthocyanidins and their influence on polarity.
- Author
-
Glinski JA, Gleńsk M, Silverman B, Glinski VB, and Dudek MK
- Subjects
- Molecular Conformation, Chromatography, Cacao chemistry, Cacao metabolism, Proanthocyanidins chemistry, Proanthocyanidins isolation & purification
- Abstract
Proanthocyanidins (OPACs) are the second largest class of plant metabolites after lignans. Although knowledge of their 3D conformations would add greatly to our understanding of their biological properties, very little has been published on the conformations of OPACs with a degree of polymerization (DP) above 4. We investigated the conformations of the linear epicatechin oligomers, prominent representatives of OPACs prevalent in apples and cocoa, where the epicatechin units are interconnected through the 4β-8 bonds. For DP-2 to DP-10 oligomers, conformational preferences reflected in the arrangement of consecutive flavan-3-ol units, are characterized by the φ torsion. For dimers, there are two energy wells corresponding to two preferred φ torsions, designated as compact and extended form. This behaviour is preserved in OPACs with higher DPs, but the most energetically favoured conformations are a combination of both, with compact-only or extended-only conformations being very unlikely. Thus, oligomers with DP ≥ 7 tend to assume an overall conformation approximating a spherical shape. This shape has a significant influence on the polarity of the OPAC oligomers expressed as 3D polar surface area, calculated using Spartan software for geometry-optimized 3D models, and possibly on other physicochemical properties. The results of polarity calculations provide a molecular-level rationale for the polarity-based chromatographic separation of the cocoa B-type procyanidins with DP range 4 to 10. In our experiments, using centrifugal partition chromatography (CPC) (a solvent system consisting of EtOAc-EtOH-water (6:1:5) v/v/v with aqueous phase stationary and upper phase mobile) we found that an enriched mixture of proanthocyanidins eluted first DP-1 (epicatechin) followed by consecutive elution of the DP-2 to DP-10 in the linear 4β-8 form. We demonstrated that such separation would not be possible if compact-only or extended-only conformations were present in solution. However, for the energy-favoured, spherically shaped conformations, the observed CPC elution order is fully justified., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
9. Description of an original molecular ordering process into a disordered crystalline form: the atypical low-temperature transformation of the disordered form III of linezolid.
- Author
-
Khalaji M, Dudek MK, Paccou L, Danède F, Guinet Y, and Hédoux A
- Abstract
Form III of linezolid was prepared by heating the commercial form above 150 °C and subsequently analyzed upon cooling down to -160 °C, by low- and high-frequency Raman spectroscopy, differential scanning calorimetry and powder X-ray diffraction (PXRD). It was observed that form III was preserved down to 0 °C. At lower temperatures a soft mode was clearly detected by low-frequency Raman spectroscopy associated with the detection of additional Raman bands distinctive of additional intermolecular H-bond interactions. Raman spectroscopy investigations performed in a wide frequency range revealed a continuous transformation characterized by both displacive and order-disorder signatures. By contrast, PXRD highlighted the absence of symmetry breaking, Bragg peaks being still indexed in the same unit cell from room temperature down to -160 °C. Additionally, a significant broadening of Bragg peaks was observed with decreasing temperature interpreted as being a consequence of a distribution of frozen molecular conformations.
- Published
- 2024
- Full Text
- View/download PDF
10. Pharmacological and phytochemical insights on the pancreatic β-cell modulation by Angelica L. roots.
- Author
-
Patyra A, Vaillé J, Omhmmed S, Dudek MK, Neasta J, Kiss AK, and Oiry C
- Subjects
- Animals, Rats, Insulin metabolism, Insulin Secretion drug effects, Coumarins pharmacology, Coumarins isolation & purification, Hypoglycemic Agents pharmacology, Hypoglycemic Agents isolation & purification, Hypoglycemic Agents chemistry, Plant Roots, Angelica chemistry, Insulin-Secreting Cells drug effects, Insulin-Secreting Cells metabolism, Plant Extracts pharmacology, Plant Extracts chemistry, Phytochemicals pharmacology, Phytochemicals isolation & purification, Phytochemicals analysis
- Abstract
Ethnopharmacological Relevance: Angelica roots are a significant source of traditional medicines for various cultures around the northern hemisphere, from indigenous communities in North America to Japan. Among its many applications, the roots are used to treat type 2 diabetes mellitus; however, this application is not mentioned often. Ethnopharmacological studies have reported the use of A. japonica var. hirsutiflora, A. furcijuga, A. shikokiana, and A. keiskei to treat diabetes symptoms, and further reports have demonstrated the three angelica roots, i.e., A. japonica var. hirsutiflora, A. reflexa, and A. dahurica, exhibit insulin secretagogue activity., Aim of the Study: This study aimed to phytochemically characterize and compare angelica roots monographed in the European Pharmacopeia 11th, isolate major plant metabolites, and assess extracts and isolates' capability to modulate pancreatic β-cell function., Materials and Methods: Root extracts of Angelica archangelica, Angelica dahurica, Angelica biserrata, and Angelica sinensis were phytochemically profiled using liquid chromatography method coupled with mass spectrometry. Based on this analysis, simple and furanocoumarins were isolated using chromatography techniques. Extracts (1.6-50 μg/mL) and isolated compounds (5-40 μmol/L) were studied for their ability to modulate insulin secretion in the rat insulinoma INS-1 pancreatic β-cell model. Insulin was quantified by the homogeneous time-resolved fluorescence method., Results: Forty-one secondary metabolites, mostly coumarins, were identified in angelica root extracts. A. archangelica, A. dahurica, and A. biserrata root extracts at concentration of 12.5-50 μg/mL potentiated glucose-induced insulin secretion, which correlated with their high coumarin content. Subsequently, 23 coumarins were isolated from these roots and screened using the same protocol. Coumarins substituted with the isoprenyl group were found to be responsible for the extracts' insulinotropic effect., Conclusions: Insulinotropic effects of three pharmacopeial angelica roots were found, the metabolite profiles and pharmacological activities of the roots were correlated, and key structures responsible for the modulation of pancreatic β-cell function were identified. These findings may have implications for the traditional use of angelica roots in treating diabetes. Active plant metabolites may also become lead structures in the search for new antidiabetic treatments., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
11. A New Look at the Mechanism of Cocrystal Formation and Coformers Exchange in Processes Forced by Mechanical and/or Thermal Stimuli - ex situ and in situ Studies of Low-Melting Eutectic Mixtures.
- Author
-
Dudek MK, Trzeciak K, Tajber L, Zając J, Kaźmierski S, Pindelska E, Makowski T, Svyntkivska M, and Potrzebowski MJ
- Abstract
Three different devices: ball mill, hot stage melting, and magic angle spinning (MAS) NMR rotor were used for the preparation of ethenzamide (ET) cocrystals with glutaric acid (GLU), ethylmalonic acid (EMA) and maleic acid (MAL) as coformers. In each case, well-defined binary systems (ET:EMA, ET:GLU, ET:MAL) were obtained. The common features of the two solvent free methods of cocrystal formation (grinding, melting) are presented on the basis of arguments obtained by solid state NMR spectroscopy. Thermal analysis (Differential Scanning Calorimetry) proved that the eutectic phase arises over a wide range of molar ratios of components for each of the binary systems. NMR techniques, supported by theoretical calculations, allowed to provide details about the pathway of the reaction mechanism with atomic accuracy. It was found that the formation of ET cocrystals is a complex process that requires five steps. Each step has been recognized and described. Variable temperature 1D and 2D MAS NMR experiments allowed to track physicochemical processes taking place in a molten state. Moreover, it was found that in a multicomponent mixture consisting of all four components, ET, EMA, GLU, and MAL, ET in the molten phase behaves as a specific selector choosing only one partner to form binary cocrystals according to energy preferences. The process of exchange of coformers in binary systems during grinding, melting, and NMR measurements is described. The stabilization energies (E
stab ) and molecular electrostatic potential (MEP) maps computed for the cocrystals under discussion and their individual components rationalize the selection rules and explain the relationships between individual species., (© 2023 Wiley-VCH GmbH.)- Published
- 2024
- Full Text
- View/download PDF
12. 17-β-Estradiol-β-Cyclodextrin Complex as Solid: Synthesis, Structural and Physicochemical Characterization.
- Author
-
Mazurek AH, Szeleszczuk Ł, Bethanis K, Christoforides E, Dudek MK, Zielińska-Pisklak M, and Pisklak DM
- Abstract
17-β-estradiol (EST) is the most potent form of naturally occurring estrogens; therefore, it has found a wide pharmaceutical application. The major problem associated with the use of EST is its very low water solubility, resulting in poor oral bioavailability. To overcome this drawback, a complexation with cyclodextrins (CD) has been suggested as a solution. In this work, the host-guest inclusion complex between the ß-CD and EST has been prepared using four different methods. The obtained samples have been deeply characterized using
13 C CP MAS solid state NMR, PXRD, FT-IR, TGA, DSC, and SEM. Using SCXRD, the crystal structure of the complex has been determined, being to the best of our knowledge the first solved crystal structure of an estrogen/CD complex. The periodic DFT calculations of NMR properties using GIPAW were found to be particularly helpful in the analysis of disorder in the solid state and interpretation of experimental NMR results. This work highlights the importance of a combined ssNMR/SCXRD approach to studying the structure of the inclusion complexes formed by cyclodextrins.- Published
- 2023
- Full Text
- View/download PDF
13. Unexpected Factors Affecting the Kinetics of Guest Molecule Release from Investigation of Binary Chemical Systems Trapped in a Single Void of Mesoporous Silica Particles.
- Author
-
Trzeciak K, Wielgus E, Kaźmierski S, Khalaji M, Dudek MK, and Potrzebowski MJ
- Abstract
In this work, we present results for loading of well-defined binary systems (cocrystal, solid solution) and untreated materials (physical mixtures) into the voids of MCM-41 mesoporous silica particles employing three different filling methods. The applied techniques belong to the group of "wet methods" (diffusion supported loading - DiSupLo) and "solvent-free methods" (mechanical ball-mill loading - MeLo, thermal solvent free - TSF). As probes for testing the guest1-guest2 interactions inside the MCM-41 pores we employed the benzoic acid (BA), perfluorobenzoic acid (PFBA), and 4-fluorobenzoic acid (4-FBA). The guests intermolecular contacts and phase changes were monitored employing magic angle spinning (MAS) NMR Spectroscopy techniques and powder X-ray diffraction (PXRD). Since mesoporous silica materials are commonly used in drug delivery system research, special attention has been paid to factors affecting guest release kinetics. It has been proven that not only the content and composition of binary systems, but also the loading technique have a strong impact on the rate of guests release. Innovative methods of visualizing differences in release kinetics are presented., (© 2022 Wiley-VCH GmbH.)
- Published
- 2023
- Full Text
- View/download PDF
14. Bio-Guided Isolation of Compounds from Fraxinus excelsior Leaves with Anti-Inflammatory Activity.
- Author
-
Kołtun-Jasion M, Sawulska P, Patyra A, Woźniak M, Dudek MK, Filipek A, and Kiss AK
- Subjects
- Humans, Cytokines metabolism, Diabetes Mellitus, Type 2 drug therapy, Interleukin-6, Lipopolysaccharides, Plant Extracts pharmacology, Tandem Mass Spectrometry, Tumor Necrosis Factor-alpha metabolism, Leukocytes, Mononuclear drug effects, Leukocytes, Mononuclear metabolism, Macrophages drug effects, Macrophages metabolism, Anti-Inflammatory Agents chemistry, Anti-Inflammatory Agents pharmacology, Fraxinus chemistry, Fraxinus metabolism, Phytochemicals chemistry, Phytochemicals pharmacology
- Abstract
Inflammation is the first physiological defence mechanism against external and internal stimuli. The prolonged or inappropriate response of the immune system may lead to the persistent inflammatory response that can potentially become a basis for chronic diseases e.g., asthma, type II diabetes or cancer. An important role in the alleviation of inflammatory processes, as an adjunct to traditional pharmacological therapy, is attributed to phytotherapy, especially to raw materials with a long tradition of use, e.g., ash leaves. Despite their long-term use in phytotherapy, the specific mechanisms of action have not been confirmed in a sufficient number of biological or clinical studies. The aim of the study is a detailed phytochemical analysis of infusion and its fractions, isolation of pure compounds from the leaves of Fraxinus excelsior and evaluation of their effect on the secretion of anti-inflammatory cytokines (TNF-α, IL-6) and IL-10 receptor expression in an in vitro model of monocyte/macrophage cells isolated from peripheral blood. Methods: Phytochemical analysis was carried out by the UHPLC-DAD-ESI-MS/MS method. Monocytes/macrophages were isolated from human peripheral blood using density gradient centrifugation on Pancoll. After 24 h incubation with tested fractions/subfractions and pure compounds, cells or their supernatants were studied, respectively, on IL-10 receptor expression by flow cytometry and IL-6, TNF-α, IL-1β secretion by the ELISA test. Results were presented with respect to Lipopolysaccharide (LPS) control and positive control with dexamethasone. Results: The infusion, 20% and 50% methanolic fractions and their subfractions, as well as their dominating compounds, e.g., ligstroside, formoside and oleoacteoside isolated from the leaves, show the ability to increase the IL-10 receptor expression on the surface of monocyte/macrophage cells, stimulated by LPS, and to decrease the secretion of pro-inflammatory cytokines, e.g., TNF-α, IL-6.
- Published
- 2023
- Full Text
- View/download PDF
15. "Crystal memory" Affects the Properties of Peptide Hydrogels - The Case of the Cyclic Tyr-Tyr dipeptide.
- Author
-
Chotera-Ouda A, Jeziorna A, Kaźmierski S, Dolot R, Dudek MK, and Potrzebowski MJ
- Subjects
- Peptides, Circular Dichroism, Hydrogels chemistry, Dipeptides chemistry
- Abstract
In this work a relationship between the crystal form and morphology and rheological properties of peptide-based hydrogels is examined. We show, that under favorable circumstances a correlation between a starting solid material and a self-assembly processes in solution can exist, leading to different properties of a resulting soft matter. This observation, together with an in-depth analysis of the influence of stereochemistry of self-assembled (ll) and (dl) Tyr-Tyr cyclic dipeptides (cYY) on the observed relationship between gelation and crystallization allowed us to gain a deeper understanding of the peptide hydrogelation processes at a molecular level, using liquid state NMR, rheological studies and scanning electron microscopy. In the course of our studies, several crystal forms of (ll)-cYY has been discovered and described in details using single crystal X-ray diffraction, as well as advanced solid state NMR, X-ray diffraction of powders, thermal analysis, FTIR, circular dichroism and crystal structure prediction (CSP) calculations. Subsequently, we found that while (ll)-cYY easily assembles into hydrogels with different properties depending on the starting solid form, (dl)-cYY always precipitated as one crystal form in the tested conditions. Molecular-level justification for this observation is given., (© 2022 Wiley-VCH GmbH.)
- Published
- 2022
- Full Text
- View/download PDF
16. LC-DAD-ESI-MS/MS and NMR Analysis of Conifer Wood Specialized Metabolites.
- Author
-
Patyra A, Dudek MK, and Kiss AK
- Subjects
- Wood, Tandem Mass Spectrometry methods, Industrial Waste analysis, Phytochemicals chemistry, Flavonoids, Plant Extracts chemistry, Proanthocyanidins analysis, Tracheophyta, Stilbenes, Lignans
- Abstract
Many species from the Pinaceae family have been recognized as a rich source of lignans, flavonoids, and other polyphenolics. The great common occurrence of conifers in Europe, as well as their use in the wood industry, makes both plant material and industrial waste material easily accessible and inexpensive. This is a promising prognosis for both discovery of new active compounds as well as for finding new applications for wood and its industry waste products. This study aimed to analyze and phytochemically profile 13 wood extracts of the Pinaceae family species, endemic or introduced in Polish flora, using the LC-DAD-ESI-MS/MS method and compare their respective metabolite profiles. Branch wood methanolic extracts were phytochemically profiled. Lignans, stilbenes, flavonoids, diterpenes, procyanidins, and other compounds were detected, with a considerable variety of chemical content among distinct species. Norway spruce ( Picea abies (L.) H.Karst.) branch wood was the most abundant source of stilbenes, European larch ( Larix decidua Mill.) mostly contained flavonoids, while silver fir ( Abies alba Mill.) was rich in lignans. Furthermore, 10 lignans were isolated from the studied material. Our findings confirm that wood industry waste materials, such as conifer branches, can be a potent source of different phytochemicals, with the plant matrix being relatively simple, facilitating future isolation of target compounds., Competing Interests: The authors declare no conflicts of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.
- Published
- 2022
- Full Text
- View/download PDF
17. Narrowing down the conformational space with solid-state NMR in crystal structure prediction of linezolid cocrystals.
- Author
-
Khalaji M, Paluch P, Potrzebowski MJ, and Dudek MK
- Subjects
- Crystallography, X-Ray, Magnetic Resonance Spectroscopy methods, Models, Molecular, Molecular Conformation, Linezolid
- Abstract
Many solids crystallize as microcrystalline powders, thus precluding the application of single crystal X-Ray diffraction in structural elucidation. In such cases, a joint use of high-resolution solid-state NMR and crystal structure prediction (CSP) calculations can be successful. However, for molecules showing significant conformational freedom, the CSP-NMR protocol can meet serious obstacles, including ambiguities in NMR signal assignment and too wide conformational search space to be covered by computational methods in reasonable time. Here, we demonstrate a possible way of avoiding these obstacles and making as much use of the two methods as possible in difficult circumstances. In a simple case, our experiments led to crystal structure elucidation of a cocrystal of linezolid (LIN), a wide-range antibiotic, with 2,3-dihydroxybenzoic acid, while a significantly more challenging case of a cocrystal of LIN with 2,4-dihydroxybenzoic acid led to the identification of the most probable conformations of LIN inside the crystal. Having four rotatable bonds, some of which can assume many discreet values, LIN molecule poses a challenge in establishing its conformation in a solid phase. In our work, a set of 27 conformations were used in CSP calculations to yield model crystal structures to be examined against experimental solid-state NMR data, leading to a reliable identification of the most probable molecular arrangements., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
18. Controlling polymorphism: general discussion.
- Author
-
Cedeno R, Cruz-Cabeza A, Drummond-Brydson R, Dudek MK, Edkins K, Fichthorn K, Finney AR, Ford I, Galloway JM, Grossier R, Kim J, Kuttner C, Maini L, Meldrum F, Miller M, Morris P, Nilsson Lill SO, Pokroy B, Price S, Rietveld IB, Rimer J, Roberts K, Rogal J, Salvalaglio M, Sefcik J, Sun W, Veesler S, Vekilov P, Wheatcroft H, Whittaker M, and Zhao R
- Subjects
- Polymorphism, Genetic
- Published
- 2022
- Full Text
- View/download PDF
19. Understanding crystal nucleation mechanisms: where do we stand? General discussion.
- Author
-
Anderson MW, Bennett M, Cedeno R, Cölfen H, Cox SJ, Cruz-Cabeza AJ, De Yoreo JJ, Drummond-Brydson R, Dudek MK, Fichthorn KA, Finney AR, Ford I, Galloway JM, Gebauer D, Grossier R, Harding JH, Hare A, Horváth D, Hunter L, Kim J, Kimura Y, Kirschhock CEA, Kiselev AA, Kras W, Kuttner C, Lee AY, Liao Z, Maini L, Nilsson Lill SO, Pellens N, Price SL, Rietveld IB, Rimer JD, Roberts KJ, Rogal J, Salvalaglio M, Sandei I, Schuszter G, Sefcik J, Sun W, Ter Horst JH, Ukrainczyk M, Van Driessche AES, Veesler S, Vekilov PG, Verma V, Whale T, Wheatcroft HP, and Zeglinski J
- Subjects
- Crystallization
- Published
- 2022
- Full Text
- View/download PDF
20. Growing crystals by design: general discussion.
- Author
-
Anderson M, Bennett M, Cedeno R, Dudek MK, Fichthorn K, Finney AR, Ford I, Freeman C, Hare A, Hewson C, Hill A, Kim J, Kirschhock C, Kuttner C, Meldrum F, Nilsson Lill SO, Pooley R, Rietveld IB, Rimer J, Roberts K, Rogal J, Salvalaglio M, Sefcik J, Sun W, Thompson D, Tong J, Trueman M, and Vekilov P
- Subjects
- Crystallization
- Published
- 2022
- Full Text
- View/download PDF
21. Isolation of Echimidine and Its C-7 Isomers from Echium plantagineum L. and Their Hepatotoxic Effect on Rat Hepatocytes.
- Author
-
Gleńsk M, Dudek MK, Kinkade P, Santos ECS, Glinski VB, Ferreira D, Seweryn E, Kaźmierski S, Calixto JB, and Glinski JA
- Subjects
- Animals, Hepatocytes chemistry, Rats, Zinc, Echium chemistry, Pyrrolizidine Alkaloids chemistry
- Abstract
Echimidine is the main pyrrolizidine alkaloid of Echium plantagineum L., a plant domesticated in many countries. Because of echimidine's toxicity, this alkaloid has become a target of the European Food Safety Authority regulations, especially in regard to honey contamination. In this study, we determined by NMR spectroscopy that the main HPLC peak purified from zinc reduced plant extract with an MS [M + H]
+ signal at m / z 398 corresponding to echimidine ( 1 ), and in fact also represents an isomeric echihumiline ( 2 ). A third isomer present in the smallest amount and barely resolved by HPLC from co-eluting ( 1 ) and ( 2 ) was identified as hydroxymyoscorpine ( 3 ). Before the zinc reduction, alkaloids ( 1 ) and ( 2 ) were present mostly (90%) in the form of an N -oxide, which formed a single peak in HPLC. This is the first report of finding echihumiline and hydroxymyoscorpine in E. plantagineum . Retroanalysis of our samples of E . plantagineum collected in New Zealand, Argentina and the USA confirmed similar co-occurrence of the three isomeric alkaloids. In rat hepatocyte primary culture cells, the alkaloids at 3 to 300 µg/mL caused concentration-dependent inhibition of hepatocyte viability with mean IC50 values ranging from 9.26 to 14.14 µg/mL. Our discovery revealed that under standard HPLC acidic conditions, echimidine co-elutes with its isomers, echihumiline and to a lesser degree with hydroxymyoscorpine, obscuring real alkaloidal composition, which may have implications for human toxicity.- Published
- 2022
- Full Text
- View/download PDF
22. Physicochemical and Biological Study of 99m Tc and 68 Ga Radiolabelled Ciprofloxacin and Evaluation of [ 99m Tc]Tc-CIP as Potential Diagnostic Radiopharmaceutical for Diabetic Foot Syndrome Imaging.
- Author
-
Koźmiński P, Gawęda W, Rzewuska M, Kopatys A, Kujda S, Dudek MK, Halik PK, Królicki L, and Gniazdowska E
- Subjects
- Ciprofloxacin, Gallium Radioisotopes, Humans, Radiopharmaceuticals, Diabetes Mellitus, Diabetic Foot diagnostic imaging, Staphylococcal Infections diagnostic imaging
- Abstract
This paper presents the application of ciprofloxacin as a biologically active molecule (vector) for delivering diagnostic radiopharmaceuticals to the sites of bacterial infection. Ciprofloxacin-based radioconjugates containing technetium-99m or gallium-68 radionuclides were synthesised, and their physicochemical (stability, lipophilicity) and biological (binding study to Staphylococcus aureus and Pseudomonas aeruginosa ) properties were investigated. Both the tested radiopreparations met the requirements for radiopharmaceuticals, and technetium-99m-labelled ciprofloxacin turned out to be a good radiotracer for the tomography of diabetic foot syndrome using SPECT.
- Published
- 2021
- Full Text
- View/download PDF
23. Improved HDAC Inhibition, Stronger Cytotoxic Effect and Higher Selectivity against Leukemias and Lymphomas of Novel, Tricyclic Vorinostat Analogues.
- Author
-
Bieszczad B, Garbicz D, Świtalska M, Dudek MK, Warszycki D, Wietrzyk J, Grzesiuk E, and Mieczkowski A
- Abstract
Histone deacetylase (HDAC) inhibitors are a class of drugs used in the cancer treatment. Here, we developed a library of 19 analogues of Vorinostat, an HDAC inhibitor used in lymphomas treatment. In Vorinostat, we replaced the hydrophobic phenyl group with various tricyclic 'caps' possessing a central, eight-membered, heterocyclic ring, and investigated the HDAC activity and cytotoxic effect on the cancer and normal cell lines. We found that 3 out of the 19 compounds, based on dibenzo[ b,f ]azocin-6(5 H )-one, 11,12-dihydrodibenzo[ b,f ]azocin-6(5 H )-one, and benzo[ b ]naphtho[2,3- f ][1,5]diazocine-6,14(5 H ,13 H )-dione scaffolds, showed better HDACs inhibition than the referenced Vorinostat. In leukemic cell line MV4-11 and in the lymphoma cell line Daudi, three compounds showed lower IC
50 values than Vorinostat. These compounds had higher activity and selectivity against MV4-11 and Daudi cell lines than reference Vorinostat. We also observed a strong correlation between HDACs inhibition and the cytotoxic effect. Cell lines derived from solid tumours: A549 (lung carcinoma) and MCF-7 (breast adenocarcinoma) as well as reference BALB/3T3 (normal murine fibroblasts) were less susceptible to compounds tested. Developed derivatives show improved properties than Vorinostat, thus they could be considered as possible agents for leukemia and lymphoma treatment.- Published
- 2021
- Full Text
- View/download PDF
24. Isolation and structural determination of flavan-3-ol derivatives from the Polypodium vulgare L. rhizomes water extract.
- Author
-
Gleńsk M, Dudek MK, Ciach M, and Włodarczyk M
- Subjects
- Carbon-13 Magnetic Resonance Spectroscopy, Phenols chemistry, Proton Magnetic Resonance Spectroscopy, Flavonoids chemistry, Flavonoids isolation & purification, Plant Extracts chemistry, Polypodium chemistry, Rhizome chemistry, Water chemistry
- Abstract
Polypodium vulgare L. (Polypodiaceae) is a fern used in traditional Polish medicine as an expectorant to treat cough and pertussis. Additionally, it was used as a diuretic in renal diseases, especially in chronic nephritis and pyelonephritis. In our study, a water extract was prepared from the rhizome of common polypody and subsequently fractionated on a resin column. As a result, the mixture of flavan-3-ol derivatives was obtained after the column elution with 60% methanol. Further purification by various chromatographic techniques led us to the isolation of (+)-afzelechin ( 1 ), a new previously not reported (+)-afzelechin-7- O -α-l-arabinofuranoside ( 2 ), and three other monomer flavan-3-ol glycosides: (+)-afzelechin-7- O -β-d-apiofuranoside ( 3 ), (+)-catechin-7- O -α-l-arabinofuranoside ( 4 ) and (+)-catechin-7- O -β-d-apiofuranoside ( 5 ). Structures of the compounds were established by HR-ESI-MS, 1D and 2D NMR spectroscopy. The HSQC and HMBC NMR techniques were used in the structure elucidation of the position of sugar attachment.
- Published
- 2021
- Full Text
- View/download PDF
25. Cocrystals "Divorce and Marriage": When a Binary System Meets an Active Multifunctional Synthon in a Ball Mill.
- Author
-
Dudek MK, Śniechowska J, Wróblewska A, Kaźmierski S, and Potrzebowski MJ
- Abstract
A well-defined and stable "AB" binary system in the presence of "C" a crystalline synthon ground in a ball mill undergoes selective transformation in the solid state according to the equation AB+C→AC+B. When the amount of C is increased two times then the equation AB+2C→AC+BC is valid. The other variants are more complex. The pathway BC+A is allowed and leads to the AC and B products. The pathway AC+B is not preferred, and no transformation is observed. These non-obvious correlations were observed for cocrystal of barbituric acid (BA):thiobarbituric acid (TBA) recently reported by Shemchuk et al. (Chem. Commun. 2016, 52, 11815-11818) in the presence of 1-hydroxy-4,5-dimethyl-imidazole 3-oxide (HIMO). This synthon shows high affinity for the BA
0.5 TBA0.5 cocrystal as well for its individual components, BA and TBA. Single-quantum, double-quantum (SQ-DQ) 2D1 H very fast MAS NMR with a spinning rate of 60 kHz was employed as a basic and most diagnostic tool for the study of cocrystals transformations. Analysis of the experimental data was supported by theoretical calculations, including computation of the stabilization energy, Estab , defined as the energy difference between the energy of a co-crystal and the sum of the energies of particular components in the respective stoichiometric ratios. Two mechanisms of synthon replacement have been proposed. Pathway 1 assumes a concerted mechanism of substitution. In this approach, synthon attack is synchronized in time with the departure of one of the components of the binary system. Pathway 2 implies a non-concerted process, with an intermediate stage in which three separate components are present. Evidence suggesting a preference for Pathway 2 is shown., (© 2020 Wiley-VCH GmbH.)- Published
- 2020
- Full Text
- View/download PDF
26. Antibacterial and anti-inflammatory activity of bistort (Bistorta officinalis) aqueous extract and its major components. Justification of the usage of the medicinal plant material as a traditional topical agent.
- Author
-
Pawłowska KA, Hałasa R, Dudek MK, Majdan M, Jankowska K, and Granica S
- Subjects
- Administration, Topical, Anti-Bacterial Agents administration & dosage, Anti-Bacterial Agents isolation & purification, Anti-Inflammatory Agents administration & dosage, Anti-Inflammatory Agents isolation & purification, Apoptosis drug effects, Bacteria growth & development, Cells, Cultured, Cytokines metabolism, Dermatologic Agents administration & dosage, Dermatologic Agents isolation & purification, Humans, Inflammation Mediators metabolism, Microbial Sensitivity Tests, Neutrophil Activation drug effects, Neutrophils immunology, Neutrophils metabolism, Neutrophils pathology, Phytochemicals administration & dosage, Phytochemicals isolation & purification, Plant Extracts administration & dosage, Plant Extracts isolation & purification, Rhizome, Solvents chemistry, Water chemistry, Anti-Bacterial Agents pharmacology, Anti-Inflammatory Agents pharmacology, Bacteria drug effects, Dermatologic Agents pharmacology, Neutrophils drug effects, Phytochemicals pharmacology, Plant Extracts pharmacology, Polygonum chemistry
- Abstract
Ethnopharmacological Relevance: Bistort rhizome (Bistorta officinalis) is a traditionally used plant material popular in Europe and Asia in the treatment of diarrhea and as a topical agent for skin conditions. It contains tannins mostly condensed flavan-3-ol derivatives. However, the in-depth phytochemical investigation of infusions from this plant materials is still lacking. Additionally, the scientific reports supporting the traditional topical application of bistort rhizome are scarce., Aim of the Study: The major objective of the present study was to comprehensively investigate the chemical composition of infusion from subterranean parts of common bistort both using hyphenated chromatographic technique and isolation approach. Additionally, the influence of water extract on pro-inflammatory functions of human neutrophils was performed. As bacterial infections play a crucial role in the generation of skin inflammations the antimicrobial activity of the infusion and its major components was established., Material and Methods: The chemical composition of the infusion was established using UHPLC-DAD-MS
3 method. Major compounds which could not be identified using chromatographic analysis were isolated by column chromatography and preparative HPLC. Obtained pure phytochemicals were identified by NMR analysis. The influence of the extract and compounds on the cell viability and apoptosis was evaluated by flow cytometry. The release of pro-inflammatory cytokines after LPS stimulation was established by ELISA. Finally, the antimicrobial assays were performed by establishing MIC and MBC values using several bacterial strains., Results: The UHPLC analysis revealed the infusion contained mainly, galloyl glucose derivatives, procyanidins and chlorogenic acid. Several compounds were isolated and identified for the first time from the investigated plant material. It was shown that the infusion and its constituents influenced the release of proinflammatory cytokines such as IL-1β, TNF-α and IL-8 and also affected the viability and apoptosis of healthy cells. Both extract and isolated natural products displayed antimicrobial activity against skin pathogens., Conclusions: The results obtained in the present study support that the infusions from common bistort influence key biological processes are crucial for skin conditions with the inflammatory background. The study justifies the traditional topical application of common bistort., (Copyright © 2020. Published by Elsevier B.V.)- Published
- 2020
- Full Text
- View/download PDF
27. Structural variety of heterosynthons in linezolid cocrystals with modified thermal properties.
- Author
-
Khalaji M, Wróblewska A, Wielgus E, Bujacz GD, Dudek MK, and Potrzebowski MJ
- Abstract
In a search for new crystalline forms of linezolid with modified thermal properties five cocrystals of this wide range antibiotic with aromatic acids were obtained via mechanochemical grinding and analyzed with single crystal X-ray diffraction, solid-state NMR spectroscopy, powder X-ray diffraction and DSC measurements. The coformers used in this study were benzoic acid, p-hydroxybenzoic acid, protocatechuic acid, γ-resorcylic acid and gallic acid. In each of the cocrystals distinct structural features have been found, including a variable amount of water and different heterosynthons, indicating that there is more than one type of intermolecular interaction preferred by the linezolid molecule. Basing on the frequency of the observed supramolecular synthons, the proposed hierarchy of the hydrogen-bond acceptor sites of linezolid (LIN) is C=O
amide > C=Ooxazolidone > C-O-Cmorpholine > C-N-Cmorpholine > C-O-Coxazolidone . In addition, aromatic-aromatic interactions were found to be important in the stabilization of the analyzed structures. The obtained cocrystals show modified thermal properties, with four of them having melting points lower than the temperature of the phase transition from linezolid form II to linezolid form III. Such a change in this physicochemical property allows for the future application of melting-based techniques of introducing linezolid into drug delivery systems. In addition a change in water solubility of linezolid upon cocrystalization was evaluated, but only in the case of the cocrystal with protocatechuic acid was there a significant (43%) improvement in solubility in comparison with linezolid.- Published
- 2020
- Full Text
- View/download PDF
28. Unsymmetrically-Substituted 5,12-dihydrodibenzo[ b , f ][1,4]diazocine-6,11-dione Scaffold-A Useful Tool for Bioactive Molecules Design.
- Author
-
Bieszczad B, Garbicz D, Trzybiński D, Dudek MK, Woźniak K, Grzesiuk E, and Mieczkowski A
- Subjects
- Cell Line, Tumor, Crystallography, X-Ray, Cyclization, Drug Design, Heterocyclic Compounds chemistry, Humans, Inhibitory Concentration 50, Molecular Structure, Antineoplastic Agents pharmacology, Cell Proliferation drug effects
- Abstract
Unsymmetrically N -substituted and N,N' -disubstituted 5,12-dihydrodibenzo [ b , f ][1,4]diazocine-6,11-diones were synthesized in the new protocol. The desired modifications of the dibenzodiazocine scaffold were introduced at the stages of proper selection of building blocks as well as post-cyclization modifications with alkylation or acylation agents, expanding the structural diversity and possible applications of synthesized molecules. The extension of developed method resulted in the synthesis of novel: tricyclic 5,10-dihydrobenzo[ b ]thieno[3,4- f ][1,4]diazocine-4,11-dione scaffold and fused pentacyclic framework possessing two benzodiazocine rings within its structure. Additionally, the unprecedented rearrangement of 5,12-dihydrodibenzo[ b , f ][1,4]diazocine-6,11-diones to 2-(2-aminophenyl)isoindoline-1,3-diones was observed under the basic conditions in the presence of sodium hydride for secondary dilactams. The structures of nine synthesized products have been established by single-crystal X-ray diffraction analysis. Detailed crystallographic analysis of the investigated tri- and pentacyclic systems has shed more light on their structural features. One cell line derived from non-cancerous cells (EUFA30-human fibroblasts) and three tumor cells (U87-human primary glioblastoma, HeLa-cervix adenocarcinoma, BICR18-laryngeal squamous cell carcinoma) were used to determine the cytotoxic effect of the newly synthesized compounds. Although these compounds showed a relatively weak cytotoxic effect, the framework obtained for 5,12-dihydrodibenzo[ b , f ][1,4]diazocine-6,11-dione could serve as a convenient privilege structure for the design and development of novel bioactive molecules suitable for drug design, development and optimization programs., Competing Interests: The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.
- Published
- 2020
- Full Text
- View/download PDF
29. Crystal structures of two furazidin polymorphs revealed by a joint effort of crystal structure prediction and NMR crystallography.
- Author
-
Dudek MK, Paluch P, and Pindelska E
- Abstract
This work presents the crystal structure determination of two elusive polymorphs of furazidin, an antibacterial agent, employing a combination of crystal structure prediction (CSP) calculations and an NMR crystallography approach. Two previously uncharacterized neat crystal forms, one of which has two symmetry-independent molecules (form I), whereas the other one is a Z' = 1 polymorph (form II), crystallize in P2
1 /c and P1 space groups, respectively, and both are built by different conformers, displaying different intermolecular interactions. It is demonstrated that the usage of either CSP or NMR crystallography alone is insufficient to successfully elucidate the above-mentioned crystal structures, especially in the case of the Z' = 2 polymorph. In addition, cases of serendipitous agreement in terms of1 H or13 C NMR data obtained for the CSP-generated crystal structures different from the ones observed in the laboratory (false-positive matches) are analyzed and described. While for the majority of analyzed crystal structures the obtained agreement with the NMR experiment is indicative of some structural features in common with the experimental structure, the mentioned serendipity observed in exceptional cases points to the necessity of caution when using an NMR crystallography approach in crystal structure determination.- Published
- 2020
- Full Text
- View/download PDF
30. The influence of the stereochemistry and C-end chemical modification of dermorphin derivatives on the peptide-phospholipid interactions.
- Author
-
Trzeciak K, Paluch P, Pawlak T, Różański A, Dudek MK, and Potrzebowski MJ
- Subjects
- Amino Acids, Aromatic, Dimyristoylphosphatidylcholine metabolism, Hydrophobic and Hydrophilic Interactions, Molecular Conformation, Opioid Peptides metabolism, Stereoisomerism, Lipid Bilayers chemistry, Opioid Peptides chemistry, Phospholipids metabolism
- Abstract
In this work the conformation of dermorphin, Tyr-D-Ala-Phe-Gly-Tyr-Pro-Ser-NH
2 , an opioid peptide and its analogues with different stereochemistry of alanine and different C-terminus is studied in aqueous and membrane environments. Using two-dimensional NMR techniques we demonstrate that in D2 O/H2 O peptides with D-alanine have extended conformation, while for the L-isomers more compact conformation is preferred. The analysis of ROESY HR MAS spectra of the peptides interacting with the DMPC bilayer indicates that both stereoisomers have still more extended conformation compared to aqueous phase, as shown by much weaker intermolecular interactions. The influence of Ala residue stereochemistry is also reflected in the interactions of the studied peptides with model membranes, as shown by the31 P NMR static spectra, in which the shapes of the phosphorus NMR signals originating from D-isomers correspond to spherically shaped vesicles in the presence of external magnetic field, in comparison to a more elongated ones observed for L-isomers, while TEM photographs shows that upon addition of D-isomers larger lipid vesicles are formed, in contrast to smaller ones for L-isomers. The location of aromatic fragments of dermorphins in the membrane is determined based on static2 H NMR and1 H1 H RFDR MAS experiments. All aromatic rings were found to be inserted in the hydrophobic part of the bilayer, with the exception of the Tyr5 rings of D-Ala dermorphins. The influence of the C-terminal modification was found to be almost imperceptible., (Copyright © 2019 Elsevier B.V. All rights reserved.)- Published
- 2020
- Full Text
- View/download PDF
31. Spontaneous Stereoselective Oxidation of Crystalline Avermectin B 1a to Its C-8a-( S )-Hydroperoxide.
- Author
-
Gliński JA, Proudfoot J, Madura I, Zhang H, Gleńsk M, Day V, and Dudek MK
- Subjects
- Crystallization, Crystallography, X-Ray, Ivermectin chemistry, Ivermectin pharmacology, Magnetic Resonance Spectroscopy methods, Molecular Structure, Oxidation-Reduction, Stereoisomerism, Hydrogen Peroxide chemistry, Ivermectin analogs & derivatives
- Abstract
Prolonged storage of technical abamectin as well as avermectin B
1a samples yielded a previously unknown derivative, designated here as compound 1 . Detailed NMR analysis and X-ray crystallography allowed us to determine the structure of this compound and revealed the presence of a hydroperoxide group (-OOH) attached stereoselectively with configuration S to the C-8a carbon. This surprising result involves the formation of the peroxide bond in solid crystalline avermectin B1a upon exposure to air with no involvement of light or recognized catalytic factors and is consistent with a topotactic mechanism for the oxidation reaction. Compound 1 is stable in the absence of reducing agents and has potential as a starting point in structural modification of the tetrahydrofuran ring of avermectin B1a . It could also serve as a marker in assessing the quality of stored technical abamectin.- Published
- 2019
- Full Text
- View/download PDF
32. Application of new covalently-bound diglycolamide sorbent in sequential injection analysis flow system for sample pretreatment in ICP-MS determination of 239 Pu at ppt level.
- Author
-
Kołacińska K, DeVol TA, Seliman AF, Bliznyuk VN, Dudek J, Dudek MK, Piotrowski P, and Trojanowicz M
- Abstract
Diglycolamide ligands are widely applied in the analysis of radionuclides, especially lanthanides and actinides. They are used in liquid-liquid extraction procedures or in solid-phase extraction sorbents where they are adsorbed on the surface of hydrophobic polymers. The main objective of this study was to synthesize the N,N,N'N'-tetrahexyl diglycolamide with one vinyl terminating group (vTHDGA) for further covalent immobilization on the polystyrene-divinylbenzene polymeric support. The obtained complexing resin (THDGA) was employed for the mechanized sample pretreatment in the Sequential Injection Analysis - Lab-on-Valve (SIA-LOV) flow system for the determination of
239 Pu using ICP-MS detection. The analytical procedure was optimized in terms of selectivity towards several other radionuclides and elements forming potentially isobaric interferences in mass spectrometry. For 100 mL volume of sample to be analyzed, the method detection limit (MDL) was 96 mBq L-1 (42 pg L-1 ). The developed method was employed for the determination of239 Pu in real samples of a nuclear reactor coolant and spent fuel pool water from a nuclear reactor., (Copyright © 2019 Elsevier B.V. All rights reserved.)- Published
- 2019
- Full Text
- View/download PDF
33. Understanding the formation of apremilast cocrystals.
- Author
-
Dudek MK, Wielgus E, Paluch P, Śniechowska J, Kostrzewa M, Day GM, Bujacz GD, and Potrzebowski MJ
- Abstract
Apremilast (APR), an anti-psoriatic agent, easily forms isostructural cocrystals and solvates with aromatic entities, often disobeying at the same time Kitaigorodsky's rule as to the saturation of possible hydrogen-bonding sites. In this paper the reasons for this peculiar behavior are investigated, employing a joint experimental and theoretical approach. This includes the design of cocrystals with coformers having a high propensity towards the formation of both aromatic-aromatic and hydrogen-bonding interactions, determination of their structure, using solid-state NMR spectroscopy and X-ray crystallography, as well as calculations of stabilization energies of formation of the obtained cocrystals, followed by crystal structure prediction calculations and solubility measurements. The findings indicate that the stabilization energies of cocrystal formation are positive in all cases, which results from strain in the APR conformation in these crystal forms. On the other hand, solubility measurements show that the Gibbs free energy of formation of the apremilast:picolinamide cocrystal is negative, suggesting that the formation of the studied cocrystals is entropy driven. This entropic stabilization is associated with the disorder observed in almost all known cocrystals and solvates of APR.
- Published
- 2019
- Full Text
- View/download PDF
34. The influence of procyanidins isolated from small-leaved lime flowers (Tilia cordata Mill.) on human neutrophils.
- Author
-
Czerwińska ME, Dudek MK, Pawłowska KA, Pruś A, Ziaja M, and Granica S
- Subjects
- Anti-Inflammatory Agents isolation & purification, Apoptosis, Biflavonoids isolation & purification, Catechin isolation & purification, Cells, Cultured, Cytokines metabolism, Humans, N-Formylmethionine Leucyl-Phenylalanine, Proanthocyanidins isolation & purification, Reactive Oxygen Species metabolism, Anti-Inflammatory Agents pharmacology, Biflavonoids pharmacology, Catechin pharmacology, Flowers chemistry, Neutrophils drug effects, Proanthocyanidins pharmacology, Tilia chemistry
- Abstract
Linden flower is a wildly used plant material among patients in the treatment of common cold symptoms and mucosa inflammations. However, the structure and bioactivity of flavan-3-ol derivatives present in infusions from flowers of Tilia cordata have not been studied so far. The aim of current study was to isolate and identify main procyanidins present in the flowers of small-leaved lime and to evaluate their influence on the inflammatory response of human neutrophils ex vivo. The chemical structure of isolated compounds was established by 1D and 2D NMR experiments. The bioactivity of obtained compounds was tested in human neutrophils model. Cytotoxicity and influence of compounds on apoptosis was established by flow cytometry. The levels of produced cytokines were established by ELISA after stimulation with lipopolysaccharide (LPS). The inhibition of the production of reactive oxygen species was checked by luminol-dependent chemiluminescence method after N-formylmethionyl-leucyl-phenylalanine (f-MLP) induction. The phytochemical work resulted in the isolation of 10 compounds. Compounds were identified as oligomeric procyanidins and their precursor epicatechin. The potential anti-inflammatory activity of compounds was evaluated in the concentration range 5-20 μM. All compounds were able to decrease the production of ROS from f-MLP-stimulated neutrophils. Most of compounds were able to inhibit the LPS-induced release of IL-8. Some trimeric and tetrameric derivatives were also able to decrease the production of MIP-1β. Obtained results partially support the traditional usage of infusion from lime flowers in the treatment of symptoms of inflammation and irritation of mucosa in common cold, pharyngitis and tonsillitis., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
35. Structural studies on radiopharmaceutical DOTA-minigastrin analogue (CP04) complexes and their interaction with CCK2 receptor.
- Author
-
Lipiński PFJ, Garnuszek P, Maurin M, Stoll R, Metzler-Nolte N, Wodyński A, Dobrowolski JC, Dudek MK, Orzełowska M, and Mikołajczak R
- Abstract
Background: The cholecystokinin receptor subtype 2 (CCK-2R) is an important target for diagnostic imaging and targeted radionuclide therapy (TRNT) due to its overexpression in certain cancers (e.g., medullary thyroid carcinoma (MTC)), thus matching with a theranostic principle. Several peptide conjugates suitable for the TRNT of MTC have been synthesized, including a very promising minigastrin analogue DOTA-(DGlu)
6 -Ala-Tyr-Gly-Trp-Met-Asp-Phe-NH2 (CP04). In this contribution, we wanted to see whether CP04 binding affinity for CCK-2R is sensitive to the type of the complexed radiometal, as well as to get insights into the structure of CP04-CCK2R complex by molecular modeling., Results: In vitro studies demonstrated that there is no significant difference in CCK-2R binding affinity and specific cellular uptake between the CP04 conjugates complexed with [68 Ga]Ga3+ or [177 Lu]Lu3+ . In order to investigate the background of this observation, we proposed a binding model of CP04 with CCK-2R based on homology modeling and molecular docking. In this model, the C-terminal part of the molecule enters the cavity formed between the receptor helices, while the N-terminus (including DOTA and the metal) is located at the binding site outlet, exposed in large extent to the solvent. The radiometals do not influence the conformation of the molecule except for the direct neighborhood of the chelating moiety., Conclusions: The model seems to be in agreement with much of structure-activity relationship (SAR) studies reported for cholecystokinin and for CCK-2R-targeting radiopharmaceuticals. It also explains relative insensitivity of CCK-2R affinity for the change of the metal. The proposed model partially fits the reported site-directed mutagenesis data.- Published
- 2018
- Full Text
- View/download PDF
36. Effects of Phytochemically Characterized Extracts From Syringa vulgaris and Isolated Secoiridoids on Mediators of Inflammation in a Human Neutrophil Model.
- Author
-
Woźniak M, Michalak B, Wyszomierska J, Dudek MK, and Kiss AK
- Abstract
Aim of the study: The aim of the present study was to investigate the effects of phytochemically characterized extracts connected with the traditional use (infusions and ethanolic extracts) of different parts of Syringa vulgaris (common lilac) on the pro-inflammatory functions of neutrophils. Active compounds were isolated from the most promising extract(s) using bioassay-guided fractionation, and their activity and molecular mechanisms of action were determined. Methods: The extracts were characterized using a HPLC-DAD- MS
n method. The effects on ROS, MMP-9, TNF-α, IL-8, and MCP-1 production by neutrophils were measured using luminol-dependent chemiluminescence and enzyme-linked immunosorbent assay (ELISA) methods. The effects on p38MAPK, ERK1/2, JNK phosphorylation, and NF- k B p65 translocation were determined using western blots. Results: The major compounds detected in the extracts and infusions belong to structural groups, including caffeic acid derivatives, flavonoids, and iridoids. All extracts and infusions were able to significantly reduce ROS and IL-8 production. Bioassay-guided fractionation led to the isolation of the following secoiridoids: 2″-epiframeroside, oleonuezhenide, oleuropein, ligstroside, neooleuropein, hydroxyframoside, and framoside. Neooleuropein appeared to be the most active compound in the inhibition of cytokine production by attenuating the MAP kinase pathways. Conclusion: The present study demonstrated that common lilac, which is a traditionally used medicinal plant in Europe, is a valuable source of active compounds, especially neooleuropein.- Published
- 2018
- Full Text
- View/download PDF
37. Spontaneous Keto-Enol Tautomerization in the Crystal Lattice Visualized with the Help of Water Encapsulated in Hydrophilic Reservoirs.
- Author
-
Dudek MK, Wielgus E, Paluch P, and Potrzebowski MJ
- Abstract
Keto-enol tautomerism in the solid phase is a process that is particularly difficult to follow. In this work we demonstrate how it can be done by introducing deuterium into the crystal lattice of organic compounds which tend to form hydrates. In our studies we explored H-D exchange in the crystals stored in contact with deuterium oxide vapors. Employing barbituric acid (BA) and (+)-catechin (CAT) as model samples and by using advanced solid-state NMR spectroscopy and mass spectrometry, we revealed that not only OH and NH protons of these chemicals undergo exchange to deuterium in a crystal lattice, but also usually immobile protons, that is, (Ar)CH (in CAT) and CH
2 (in BA) are exchanged as a result of keto-enol tautomerism., (© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2017
- Full Text
- View/download PDF
38. Approach toward the Understanding of Coupling Mechanism for EDC Reagent in Solvent-Free Mechanosynthesis.
- Author
-
Wróblewska A, Paluch P, Wielgus E, Bujacz G, Dudek MK, and Potrzebowski MJ
- Abstract
A unique approach in mechanosynthesis, joining solid-state NMR spectroscopy, X-ray crystallography, and theoretical calculations, is employed for the first time to study the mechanism of the formation of the C-N amide bond using EDC·HCl as a coupling reagent. It has been proved that EDC·HCl, which in the crystal lattice exists exclusively in the cyclic form (X-ray data), easily undergoes transformation to a pseudocyclic stable intermediate in reaction with carboxylic acid forming a low-melt phase (differential scanning calorimetry, solid-state NMR). The obtained intermediate is reactive and can be further used for synthesis of amides in reaction with appropriate amines.
- Published
- 2017
- Full Text
- View/download PDF
39. Hydroxycinnamoyl derivatives and secoiridoid glycoside derivatives from Syringa vulgaris flowers and their effects on the pro-inflammatory responses of human neutrophils.
- Author
-
Dudek MK, Michalak B, Woźniak M, Czerwińska ME, Filipek A, Granica S, and Kiss AK
- Subjects
- Anti-Inflammatory Agents isolation & purification, Cells, Cultured, Glucosides isolation & purification, Glucosides pharmacology, Glycosides, Humans, Interleukin-8 metabolism, Iridoid Glycosides isolation & purification, Macrophages drug effects, Molecular Structure, Plant Extracts chemistry, Receptors, Interleukin-10 metabolism, Tumor Necrosis Factor-alpha metabolism, Anti-Inflammatory Agents pharmacology, Flowers chemistry, Iridoid Glycosides pharmacology, Neutrophils drug effects, Syringa chemistry
- Abstract
Thirteen new compounds including caffeoyl-glucaric and p-coumaroyl-altraric acid derivatives, one monoterpenoid glucoside, four secoiridoid glycosides, and three hydroxycinnamoyl phenylpropanoid glycosides esterified with an oleoside 11-methyl ester along with fifteen known compounds were isolated from flowers of Syringa vulgaris L. (Oleaceae). Their structures were elucidated by high-resolution spectroscopic methods. The tested compounds were able to decrease the production of reactive oxygen species. Moreover, oleoechinacoside (13), demethylhydroxyoleonuezhenide (14), demethyloleonuezhenide (15), syringaoleoacteoside (25) and oleoacteoside (26) at the concentration of 50μM, moderately suppressed the LPS-stimulated release of pro-inflammatory chemokine IL-8 and TNF-α from human neutrophils. Moreover, oleonuezhenide (12), oleoside 11-methyl ester (16) and oleoacteoside (26) at the concentration of 50μM were able to induce the surface expression of interleukin 10 receptor, which is suppressed by the incubation of monocyte/macrophage cells with LPS., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
40. Trimeric and Tetrameric A-Type Procyanidins from Peanut Skins.
- Author
-
Dudek MK, Gliński VB, Davey MH, Sliva D, Kaźmierski S, and Gliński JA
- Subjects
- Dose-Response Relationship, Drug, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Tumor Necrosis Factor-alpha drug effects, Arachis chemistry, Biflavonoids chemistry, Biflavonoids isolation & purification, Catechin chemistry, Catechin isolation & purification, Proanthocyanidins chemistry, Proanthocyanidins isolation & purification
- Abstract
Peanut skins are a rich source of oligomeric and polymeric procyanidins. The oligomeric fractions are dominated by dimers, trimers, and tetramers. A multistep chromatographic fractionation led to the isolation of four new A-type procyanidins of tri- and tetrameric structures. The structures of the new trimers were defined by NMR, electronic circular dichroism, and MS data as epicatechin-(4β→8,2β→O→7)-epicatechin-(4β→8,2β→O→7)-catechin, peanut procyanidin B (3), and epicatechin-(4β→8,2β→O→7)-epicatechin-(4β→6)-catechin, peanut procyanidin C (4). The new tetramers were defined as epicatechin-(4β→8,2β→O→7)-epicatechin-(4β→6)-epicatechin-(4β→8,2β→O→7)-catechin, peanut procyanidin E (1), and epicatechin-(4β→8,2β→O→7)-epicatechin-(4β→6)-epicatechin-(4β→8,2β→O→7)-epicatechin, peanut procyanidin F (2). In addition, both A-type dimers A1, epicatechin-(4β→8,2β→O→7)-catechin, and A2, epicatechin-(4β→8,2β→O→7)-epicatechin, as well as two known peanut trimers, ent-epicatechin-(4β→6)-epicatechin-(4β→8,2β→O→7)-catechin, peanut procyanidin A (5), and epicatechin-(4β→8)-epicatechin-(4β→8,2β→O→7)-catechin, peanut procyanidin D (6), were also isolated. Dimer A1, the four trimers, and two tetramers were evaluated for anti-inflammatory activity in an in vitro assay, in which LPS-stimulated macrophages were responding with secretion of TNF-α, a pro-inflammatory cytokine. Tetramer F (2) was the most potent, suppressing TNF-α secretion to 82% at 8.7 μM (10 μg/mL), while tetramer E (1) at the same concentrations caused a 4% suppression. The results of the TNF-α secretion inhibition indicate that small structural differences, as in peanut procyanidin tetramers E and F, can be strongly differentiated in biological systems.
- Published
- 2017
- Full Text
- View/download PDF
41. Effects of Geum urbanum L. root extracts and its constituents on polymorphonuclear leucocytes functions. Significance in periodontal diseases.
- Author
-
Granica S, Kłębowska A, Kosiński M, Piwowarski JP, Dudek MK, Kaźmierski S, and Kiss AK
- Subjects
- Anti-Inflammatory Agents isolation & purification, Anti-Inflammatory Agents toxicity, Apoptosis drug effects, Biomarkers metabolism, Cell Adhesion Molecules metabolism, Cells, Cultured, Chromatography, High Pressure Liquid, Cytokines metabolism, Dose-Response Relationship, Drug, Gingivitis drug therapy, Gingivitis immunology, Gingivitis metabolism, Humans, Inflammation Mediators metabolism, Leukocyte Elastase metabolism, Lipopolysaccharides pharmacology, Mass Spectrometry, Matrix Metalloproteinase 9 metabolism, Mucositis drug therapy, Mucositis immunology, Mucositis metabolism, Neutrophils immunology, Neutrophils metabolism, Periodontal Diseases immunology, Periodontal Diseases metabolism, Periodontitis drug therapy, Periodontitis immunology, Periodontitis metabolism, Phytotherapy, Plant Extracts isolation & purification, Plant Extracts toxicity, Plants, Medicinal, Reactive Oxygen Species metabolism, Respiratory Burst drug effects, Signal Transduction drug effects, Anti-Inflammatory Agents pharmacology, Geum chemistry, Neutrophil Activation drug effects, Neutrophils drug effects, Periodontal Diseases drug therapy, Plant Extracts pharmacology, Plant Roots chemistry
- Abstract
Ethnopharmacological Relevance: Geum urbanum L. (wood avens) root infusions and decoctions have been used externally for reducing the bleeding and inflammation of gums (gingivitis), and mucous membranes., Aim of the Study: Taking into account that primed and hyperactivated neutrophils are an important factor in the transition from gingivitis to periodontitis, we investigated the effects of phytochemically characterised (HPLC-DAD-MS(n)) extracts of different polarity from Geum urbanum root on oxidative burst, elastase, metalloproteinase 9 (MMP-9), interleukin 8 (IL-8) and 1β (IL-1β), tumour necrosis factor (TNF-α) release, expression of adhesion molecules (CD62L and CD11b) and delayed apoptosis in stimulated neutrophils. As gemin A is a dominating compound in a raw material, so we considered its activity in parallel with the positive control quercetin., Materials and Methods: The extracts were characterised by HPLC-DAD- MS(n) method. The inhibition of ROS production by stimulated neutrophils was determined using luminol dependent chemiluminescence method. The effect on MMP-9, IL-1β, TNF-α and IL-8 production by neutrophils was measured by enzyme-linked immunosorbent assay (ELISA). Neutrophil elastase release was established spectrophotometrically. The expression of adhesion molecules and the apoptosis of neutrophils was analyzed with flow cytometry., Results: The main compounds detected in the extract belong mainly to the group of ellagitannin: pedunculagin, stachyurin, casuarynin and gemin A, and ellagic acid derivatives. Procyanidins and one complex tannin were found as minor compounds. Gemin A significantly affected the functions of stimulated neutrophils by reducing the surface expression of CD11b, and inhibiting the release of reactive oxygen species, and proteases (elastase, MMP-9), chemokines and cytokines (interleukins IL-8, IL-1β). Interestingly, gemin A stimulated the release of TNF-α, which may be one of the stimulators of apoptosis of neutrophil cells. The primary aqueous extract, the ethyl acetate and the butanolic fractions, all containing the highest level of gemin A, have exerted similar but weaker activity., Conclusion: The modulating effect on the neutrophils function of extracts, and its main constituent gemin A, support the traditional use of this plant material in cavity inflammation including mucositis, gingivitis and periodontosis., (Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
42. The accuracy of conventional and three-dimensional thallium-technetium scans in patients with hyperparathyroidism resulting from multiglandular hyperplasia.
- Author
-
Dudek MK, Jenkins BJ, Goode AW, Newell MS, and Boucher BJ
- Subjects
- Adult, Aged, Humans, Hyperplasia diagnostic imaging, Middle Aged, Organ Size, Parathyroid Glands diagnostic imaging, Hyperparathyroidism diagnostic imaging, Parathyroid Glands pathology, Sodium Pertechnetate Tc 99m, Thallium Radioisotopes, Tomography, Emission-Computed
- Abstract
25 patients with hyperparathyroidism resulting from multiglandular hyperplasia were studied prior to cervical exploration. 43% of abnormal glands were correctly localized by preoperative thallium-technetium scintigraphy. In the 11 patients who underwent three-dimensional scanning, all glands already identified by scintigraphy were also localized in a third plane. In one patient an additional gland, not detected by the conventional scan, was visible.
- Published
- 1994
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.