168 results on '"Dutch Research Council"'
Search Results
2. Focusing on Body Functionality After Bariatric Surgery
- Author
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Nederlandse Obesitas Kliniek, Dutch Research Council, and Jessica Alleva, Assistant Professor
- Published
- 2021
3. Digital Literacies as Socially Situated Pedagogical Processes: Genealogically Understanding Media, Information, and Digital Literacies
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Dutch Research Council (NWO), Mensonides, Denise, Smit, Alexander, Talsma, Ieteke, Swart, Joëlle, Broersma, Marcel, Dutch Research Council (NWO), Mensonides, Denise, Smit, Alexander, Talsma, Ieteke, Swart, Joëlle, and Broersma, Marcel
- Abstract
Despite the increasing importance of digital literacies for citizens to be able to participate in society, there is little scholarly agreement over what digital literacies entail. This conceptual ambiguity hinders the translation of digital literacies into educational programs and policies that foster citizens’ digital literacies and inclusion. While various authors have attempted to define digital literacy separately and in relation to other concepts, such as information literacy and media literacy, little attention has been paid to the historical backdrop of these concepts. By tracing the historical development of three literacies (media-, information-, and digital literacy), we reflect on how societal demands shaped conceptual frameworks of these literacies and how these conceptualizations are situated within the broader pedagogical systems that aim to enable participation in digital societies. Using a genealogical approach, we explore and describe the changes in definition, understanding, and enactment of the three literacies, which illustrate how these concepts have developed towards the conceptual frameworks we employ today. Based on this analysis, we argue that digital literacies must be flexible to anticipate challenges that result from the rise of new technologies and need to be appropriated within different socio-cultural contexts. We pledge for an understanding of digital literacies as socially situated pedagogical processes aimed at the way citizens appropriate digital practices within their daily lives. This implies shifting away from formulating one-size-fits-all understandings based upon generic uses of digital technologies. Instead, we must appropriate the understandings of digital literacies based upon their socio-technical, cultural, political, economic, and material dimensions.
- Published
- 2024
4. Co‐Creating Sensuous Knowledge Through Food Practices With Women and LGBTQI+ Migrants in South Africa
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Ntokozo Yingwana, Dutch Research Council, Graduate School of the Vrije Universiteit Amsterdam, Ocadiz Arriaga, Miriam Adelina, Dyer-Williams, Natasha, Ntokozo Yingwana, Dutch Research Council, Graduate School of the Vrije Universiteit Amsterdam, Ocadiz Arriaga, Miriam Adelina, and Dyer-Williams, Natasha
- Abstract
African feminisms have always been informed by activism, but the development of Western‐style separation between thought and action influenced by colonial and apartheid legacies has compromised the scholarly connection between intellectual work and political action. African feminists have thus developed contextualized and critical approaches to mending the relationship between knowledge and power‐in‐action, necessitating meaningful and reciprocal collaboration with communities that experience marginalisation and oppression. African migrants in South Africa represent one of these communities, as they face xenophobic, racist, homo‐ and transphobic discourses and practices in their daily lives, pushing them to the margins of society. At the intersection of African feminisms and the socio‐economic and political discrimination of migrants, we open a dialogue between two PhD projects, both working with women and LGBTQI+ migrants in South Africa. We discuss how our different feminist research approaches (re)centre the lived experiences of women and LGBTQI+ migrants of different national backgrounds, focusing on their bodily and psychological capacities for sensing and sharing pleasure through food practices. We show that the co‐creation of “sensuous knowledge” with migrant research participants enables us to unsettle the oppressive forces that marginalise such communities. Paying close attention to where power is contested, we analyse not only the complexity of how African feminisms translate into liberatory participatory research practices, but also how migrants—through their (re)creation of pleasure and joy through food—challenge and expand how feminisms can be applied across the African continent.
- Published
- 2024
5. LeTra: a leaf tracking workflow based on convolutional neural networks and intersection over union
- Author
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Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), European Commission, Dutch Research Council, Jurado-Ruiz, Federico, Nguyen, Thu-Phuong, Peller, Joseph, Aranzana, Maria José, Polder, Gerrit, Aarts, Mark G. M., Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), European Commission, Dutch Research Council, Jurado-Ruiz, Federico, Nguyen, Thu-Phuong, Peller, Joseph, Aranzana, Maria José, Polder, Gerrit, and Aarts, Mark G. M.
- Abstract
[Background] The study of plant photosynthesis is essential for productivity and yield. Thanks to the development of high-throughput phenotyping (HTP) facilities, based on chlorophyll fluorescence imaging, photosynthetic traits can be measured in a reliable, reproducible and efficient manner. In most state-of-the-art HTP platforms, these traits are automatedly analyzed at individual plant level, but information at leaf level is often restricted by the use of manual annotation. Automated leaf tracking over time is therefore highly desired. Methods for tracking individual leaves are still uncommon, convoluted, or require large datasets. Hence, applications and libraries with different techniques are required. New phenotyping platforms are initiated now more frequently than ever; however, the application of advanced computer vision techniques, such as convolutional neural networks, is still growing at a slow pace. Here, we provide a method for leaf segmentation and tracking through the fine-tuning of Mask R-CNN and intersection over union as a solution for leaf tracking on top-down images of plants. We also provide datasets and code for training and testing on both detection and tracking of individual leaves, aiming to stimulate the community to expand the current methodologies on this topic., [Results] We tested the results for detection and segmentation on 523 Arabidopsis thaliana leaves at three different stages of development from which we obtained a mean F-score of 0.956 on detection and 0.844 on segmentation overlap through the intersection over union (IoU). On the tracking side, we tested nine different plants with 191 leaves. A total of 161 leaves were tracked without issues, accounting to a total of 84.29% correct tracking, and a Higher Order Tracking Accuracy (HOTA) of 0.846. In our case study, leaf age and leaf order influenced photosynthetic capacity and photosynthetic response to light treatments. Leaf-dependent photosynthesis varies according to the genetic background., [Conclusion] The method provided is robust for leaf tracking on top-down images. Although one of the strong components of the method is the low requirement in training data to achieve a good base result (based on fine-tuning), most of the tracking issues found could be solved by expanding the training dataset for the Mask R-CNN model.
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- 2024
6. Analysis of the molecular basis for the non-amylolytic and non-proteolytic nature of Aspergillus vadensis CBS 113365
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China Scholarship Council, Dutch Research Council, Garrigues, Sandra [0000-0002-4104-6246], Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72], Liu, Dujuan, Garrigues, Sandra, Culleton, Helena, McKie, Vincent A., de Vries, Ronald P., China Scholarship Council, Dutch Research Council, Garrigues, Sandra [0000-0002-4104-6246], Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72], Liu, Dujuan, Garrigues, Sandra, Culleton, Helena, McKie, Vincent A., and de Vries, Ronald P.
- Abstract
Aspergillus vadensis CBS 113365, a close relative of A. niger, has been suggested as a more favourable alternative for recombinant protein production as it does not acidify the culture medium and produces very low levels of extracellular proteases. The aim of this study was to investigate the underlying cause of the non-amylolytic and non-proteolytic phenotype of A. vadensis CBS 113365. Our results demonstrate that the non-functionality of the amylolytic transcription factor AmyR in A. vadensis CBS 113365 is primarily attributed to the lack of functionality of its gene's promoter sequence. In contrast, a different mechanism is likely causing the lack of PrtT activity, which is the main transcriptional regulator of protease production. The findings presented here not only expand our understanding of the genetic basis behind the distinct characteristics of A. vadensis CBS 113365, but also underscore its potential as a favourable alternative for recombinant protein production.
- Published
- 2024
7. Spectroscopic sizing of interstellar icy grains with JWST
- Author
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Centre National de la Recherche Scientifique (France), Centre National D'Etudes Spatiales (France), Ministerio de Ciencia e Innovación (España), Dutch Research Council, Royal Astronomical Society, Space Telescope Science Institute (US), Swiss National Science Foundation, Ministry of Education (Taiwan), National Science and Technology Council (Taiwan), Danish National Research Foundation, European Commission, Dartois, E. [0000-0003-1197-7143], Noble, J. A. [0000-0003-4985-8254], Caselli, P. [0000-0003-1481-7911], Fraser, H. J. [0000-0003-0972-1595], Jiménez-Serra, I. [0000-0003-4493-8714], Maté, Belén [0000-0002-5478-8644], McClure, M. K. [0000-0003-1878-327X], #NODATA#, Pendleton, Y. J. [0000-0001-8102-2903], Sturm, J. A. [0000-0002-0377-1316], Taillard, A. [0009-0006-9236-7978], Wakelam, V. [0000-0001-9676-2605], Boogert, A. C.A. [0000-0001-9344-0096], Drozdovskaya, M. N. [0000-0001-7479-4948], Erkal, J. [0000-0002-8476-1389], Harsono, D. [0000-0001-6307-4195], Ioppolo, S. [0000-0002-2271-1781], Linnartz, H. [0000-0002-8322-3538], McGuire, B. A. [0000-0003-1254-4817], Perotti, G. [0000-0002-8545-6175], Rocha, W. R.M. [0000-0001-6144-4113], Dartois, E., Noble, J. A., Caselli, P., Fraser, H. J., Jiménez-Serra, I., Maté, Belén, McClure, M. K., Melnick, G. J., Pendleton, Y. J., Shimonishi, T., Smith, Z. L., Sturm, J. A., Taillard, A., Wakelam, V., Boogert, A. C.A., Drozdovskaya, M. N., Erkal, J., Harsono, D., Herrero, Víctor J., Ioppolo, S., Linnartz, H., McGuire, B. A., Perotti, G., Qasim, D., Rocha, W. R.M., Centre National de la Recherche Scientifique (France), Centre National D'Etudes Spatiales (France), Ministerio de Ciencia e Innovación (España), Dutch Research Council, Royal Astronomical Society, Space Telescope Science Institute (US), Swiss National Science Foundation, Ministry of Education (Taiwan), National Science and Technology Council (Taiwan), Danish National Research Foundation, European Commission, Dartois, E. [0000-0003-1197-7143], Noble, J. A. [0000-0003-4985-8254], Caselli, P. [0000-0003-1481-7911], Fraser, H. J. [0000-0003-0972-1595], Jiménez-Serra, I. [0000-0003-4493-8714], Maté, Belén [0000-0002-5478-8644], McClure, M. K. [0000-0003-1878-327X], #NODATA#, Pendleton, Y. J. [0000-0001-8102-2903], Sturm, J. A. [0000-0002-0377-1316], Taillard, A. [0009-0006-9236-7978], Wakelam, V. [0000-0001-9676-2605], Boogert, A. C.A. [0000-0001-9344-0096], Drozdovskaya, M. N. [0000-0001-7479-4948], Erkal, J. [0000-0002-8476-1389], Harsono, D. [0000-0001-6307-4195], Ioppolo, S. [0000-0002-2271-1781], Linnartz, H. [0000-0002-8322-3538], McGuire, B. A. [0000-0003-1254-4817], Perotti, G. [0000-0002-8545-6175], Rocha, W. R.M. [0000-0001-6144-4113], Dartois, E., Noble, J. A., Caselli, P., Fraser, H. J., Jiménez-Serra, I., Maté, Belén, McClure, M. K., Melnick, G. J., Pendleton, Y. J., Shimonishi, T., Smith, Z. L., Sturm, J. A., Taillard, A., Wakelam, V., Boogert, A. C.A., Drozdovskaya, M. N., Erkal, J., Harsono, D., Herrero, Víctor J., Ioppolo, S., Linnartz, H., McGuire, B. A., Perotti, G., Qasim, D., and Rocha, W. R.M.
- Abstract
Clouds of gas and dust in the Galaxy are nurseries in which stars and planetary systems are born. During their journey from the diffuse interstellar medium to the protoplanetary disks, molecular solids accumulate on cold dust grains by accretion and surface chemistry. These so-called icy grains will continuously evolve, notably by collision and aggregation processes, modifying their sizes. Our ‘Ice Age’ James Webb Space Telescope observations of the dense Chamaeleon I cloud reveal that this growth starts early, before the protostellar phase, substantially modifying the ice band profiles in the spectra. Spectral analysis confirms that the grains reach micrometre sizes, implying myriad changes in local microphysics, including mass transfer from small to large grains, reduction in the grain surface available for chemistry and modification of the penetration and propagation of radiation fields. Deformation of the observed profiles complicates the determination of chemical abundance. Observing the extensive icy grain growth in dense clouds quantitatively constrains the grain size evolution before star and planet formation.
- Published
- 2024
8. Synthesis and Antimicrobial Activity of Aminoalkyl Resveratrol Derivatives Inspired by Cationic Peptides
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Universidad de Sevilla. Departamento de Química Orgánica y Farmacéutica, Junta de Andalucía, Dutch Research Council (NWA). Paises Bajos, National Institute of Allergy and Infectious Diseases (NIAID). USA, Cebrián, Rubén, Lucas Rodríguez, Ricardo, Fernández Cantos, María Victoria, Slot, Koen, Peñalver, Pablo, Martínez García, Marta, Párraga Leo, Antonio, Paz Báñez, María Violante de, García, Federico, Kuipers, Oscar P., Morales, Juan Carlos, Universidad de Sevilla. Departamento de Química Orgánica y Farmacéutica, Junta de Andalucía, Dutch Research Council (NWA). Paises Bajos, National Institute of Allergy and Infectious Diseases (NIAID). USA, Cebrián, Rubén, Lucas Rodríguez, Ricardo, Fernández Cantos, María Victoria, Slot, Koen, Peñalver, Pablo, Martínez García, Marta, Párraga Leo, Antonio, Paz Báñez, María Violante de, García, Federico, Kuipers, Oscar P., and Morales, Juan Carlos
- Abstract
Antimicrobial resistance is a global concern, far from being resolved. The need of new drugs against new targets is imminent. In this work, we present a family of aminoalkyl resveratrol derivatives with antibacterial activity inspired by the properties of cationic amphipathic antimicrobial peptides. Surprisingly, the newly designed molecules display modest activity against aerobically growing bacteria but show surprisingly good antimicrobial activity against anaerobic bacteria (Gram-negative and Gram-positive) suggesting specificity towards this bacterial group. Preliminary studies into the action mechanism suggest that activity takes place at the membrane level, while no cross-resistance with traditional antibiotics is observed. Actually, some good synergistic relations with existing antibiotics were found against Gram-negative pathogens. However, some cytotoxicity was observed, despite their low haemolytic activity. Our results show the importance of the balance between positively charged moieties and hydrophobicity to improve antimicrobial activity, setting the stage for the design of new drugs based on these molecules.
- Published
- 2023
9. SUMO-activated Target Traps (SATTs) Enable the Identification of a Comprehensive E3-specific SUMO Proteome
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Universidad de Sevilla. Departamento de Biología Celular, Ministerio de Ciencia e Innovación (MICIN). España, Junta de Andalucía, Dutch Cancer Society, European Research Council (ERC), Dutch Research Council, Swiss National Science Foundation (SNFS), Salas Lloret, Daniel, Jansen, Nicolette S., Nagamalleswari, Easa, van der Meulen, Coen, Gracheva, Ekaterina, de Ru, Arnoud H., Otte, H. Anne Marie, van Veelen, Peter A., Pichler, Andrea, Goedhart, Joachim, Vertegaal, Alfred C.O., González Prieto, Román, Universidad de Sevilla. Departamento de Biología Celular, Ministerio de Ciencia e Innovación (MICIN). España, Junta de Andalucía, Dutch Cancer Society, European Research Council (ERC), Dutch Research Council, Swiss National Science Foundation (SNFS), Salas Lloret, Daniel, Jansen, Nicolette S., Nagamalleswari, Easa, van der Meulen, Coen, Gracheva, Ekaterina, de Ru, Arnoud H., Otte, H. Anne Marie, van Veelen, Peter A., Pichler, Andrea, Goedhart, Joachim, Vertegaal, Alfred C.O., and González Prieto, Román
- Abstract
Ubiquitin and ubiquitin-like conjugation cascades consist of dedicated E1, E2, and E3 enzymes with E3s providing substrate specificity. Mass spectrometry–based approaches have enabled the identification of more than 6500 SUMO2/3 target proteins. The limited number of SUMO E3s provides the unique opportunity to systematically study E3 substrate wiring. We developed SUMO-activated target traps (SATTs) and systematically identified substrates for eight different SUMO E3s, PIAS1, PIAS2, PIAS3, PIAS4, NSMCE2, ZNF451, LAZSUL (ZNF451-3), and ZMIZ2. SATTs enabled us to identify 427 SUMO1 and 961 SUMO2/3 targets in an E3-specific manner. We found pronounced E3 substrate preference. Quantitative proteomics enabled us to measure substrate specificity of E3s, quantified using the SATT index. Furthermore, we developed the Polar SATTs web-based tool to browse the dataset in an interactive manner. Overall, we uncover E3-to-target wiring of 1388 SUMO substrates, highlighting unique and overlapping sets of substrates for eight different SUMO E3 ligases.
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- 2023
10. Spatial and temporal environmental heterogeneity induced by internal tides influences faunal patterns on vertical walls within a submarine canyon
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European Research Council, Natural Environment Research Council (UK), European Commission, Dutch Research Council, Royal Netherlands Institute for Sea Research, Agencia Estatal de Investigación (España), Pearman, Tabitha R. R., Robert, Katleen, Callaway, Alexander, Hall, Rob A., Mienis, Furu, Lo Iacono, Claudio, Huvenne, Veerle A.I., European Research Council, Natural Environment Research Council (UK), European Commission, Dutch Research Council, Royal Netherlands Institute for Sea Research, Agencia Estatal de Investigación (España), Pearman, Tabitha R. R., Robert, Katleen, Callaway, Alexander, Hall, Rob A., Mienis, Furu, Lo Iacono, Claudio, and Huvenne, Veerle A.I.
- Abstract
Vertical walls of submarine canyons represent features of high conservation value that can provide natural areas of protection for vulnerable marine ecosystems under increasing anthropogenic pressure from deep-sea trawling. Wall assemblages are spatially heterogeneous, attributed to the high environmental heterogeneity over short spatial scales that is a typical feature of canyons. Effective management and conservation of these assemblages requires a deeper understanding of the processes that affect faunal distribution patterns. Canyons are recognised as sites of intensified hydrodynamic regimes, with focused internal tides enhancing near-bed currents, turbulent mixing and nepheloid layer production, which influence faunal distribution patterns. Faunal patterns also respond to broad-scale hydrodynamics and gradients in water mass properties (e.g. temperature, salinity, dissolved oxygen concentration). Oscillating internal tidal currents can advect such gradients, both vertically and horizontally along a canyon's walls. Here we take an interdisciplinary approach using biological, hydrodynamic and bathymetry-derived datasets to undertake a high-resolution analysis of a subset of wall assemblages within Whittard Canyon, North-East Atlantic. We investigate if, and to what extent, patterns in diversity and epibenthic assemblages on deep-sea canyon walls can be explained by spatial and temporal variability induced by internal tides. Vertical displacement of water mass properties by the internal tide was calculated from autonomous ocean glider and shipboard CTD observations. Spatial patterns in faunal assemblage structure were determined by cluster analysis and non-metric Multi-Dimensional Scaling plots. Canonical Redundancy Analysis and Generalised Linear Models were then used to explore relationships between faunal diversity and assemblage structure and a variety of environmental variables. Our results support the hypothesis that internal tides influence spatial heteroge
- Published
- 2023
11. Fe(III) Biomineralization in the Surface Microlayer of Acid Mine Waters Catalyzed by Neustonic Fe(II)-Oxidizing Microorganisms
- Author
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Ministerio de Economía y Competitividad (España), Dutch Research Council, Sánchez-España, Javier, Ilin, Andrey M., Yusta, Iñaki, Graaf, Charlotte M. van der, Sánchez-Andrea, Irene, Ministerio de Economía y Competitividad (España), Dutch Research Council, Sánchez-España, Javier, Ilin, Andrey M., Yusta, Iñaki, Graaf, Charlotte M. van der, and Sánchez-Andrea, Irene
- Abstract
The formation of thin mineral films or encrustations floating on the water surface of low-flow or stagnant zones of acid mine drainage (AMD)-affected streams is probably among the most exotic features that can be found in mining areas. However, most fundamental questions about their origin (biotic vs. abiotic), structure, mineralogy, physical stability and metal-retention capacity remain unanswered. This study aims to reveal the factors promoting their formation and to clarify their composition in detail. With this purpose, the major mineral phases were studied with XRD in surface film samples found in different mine sites of the Iberian Pyrite Belt mining district (SW Spain), and the major oxide and trace metal concentrations were measured with XRF and/or ICP-MS. Fe(III) minerals dominated these formations, with mineralogy controlled by the pH (jarosite at pH~2.0, schwertmannite at pH 2.5–3.5, ferrihydrite at pH > 6.0). Other minerals have also been identified in minor proportions, such as brushite or khademite. These mineral formations show an astounding capacity to concentrate, by orders of magnitude (×10 to ×10), many different trace metals present in the underlying aqueous solutions, either as anionic complexes (e.g., U, Th, As, Cr, V, Sb, P) or as divalent metal cations (e.g., Cu, Zn, Cd, Pb). These floating mineral films are usually formed in Fe(II)-rich acidic waters, so their formation necessarily implies the oxidation of Fe(II) to Fe(III) phases. The potential involvement of Fe(II)-oxidizing microorganisms was investigated through 16S rRNA gene amplicon sequencing of water underneath the Fe(III)-rich floating mineral films. The sequenced reads were dominated by Ferrovum (51.7 ± 0.3%), Acidithiobacillus (18.5 ± 0.9%) and Leptospirillum (3.3 ± 0.1%), three well-known Fe(II)-oxidizing genera. These microorganisms are major contributors to the formation of the ferric mineral films, although other genera most likely also play a role in aspects such as Fe(III) s
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- 2023
12. A disease-associated XPA Allele Interferes with TFIIH Binding and Primarily Affects Transcription-coupled Nucleotide Excision Repair
- Author
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Universidad de Sevilla. Departamento de Biología Celular, Dutch Research Council, European Research Council (ERC), Dutch Cancer Society, Junta de Andalucía, Korean Institute for Basic Science, National Cancer Institute, van den Heuvel, Diana, Kim, Mihyun, Wondergem, Annelotte P., van der Meer, Paula J., Witkamp, Myrèse, Lambregtse, Ferdy, Kim, Hyun Suk, Kan, Folkert, Apelt, Katja, Kragten, Angela, González Prieto, Román, Luijsterburg, Martijn S., Universidad de Sevilla. Departamento de Biología Celular, Dutch Research Council, European Research Council (ERC), Dutch Cancer Society, Junta de Andalucía, Korean Institute for Basic Science, National Cancer Institute, van den Heuvel, Diana, Kim, Mihyun, Wondergem, Annelotte P., van der Meer, Paula J., Witkamp, Myrèse, Lambregtse, Ferdy, Kim, Hyun Suk, Kan, Folkert, Apelt, Katja, Kragten, Angela, González Prieto, Román, and Luijsterburg, Martijn S.
- Abstract
XPA is a central scaffold protein that coordinates the assembly of repair complexes in the global genome (GG-NER) and transcription-coupled nucleotide excision repair (TC-NER) subpathways. Inactivating mutations in XPA cause xeroderma pigmentosum (XP), which is characterized by extreme UV sensitivity and a highly elevated skin cancer risk. Here, we describe two Dutch siblings in their late forties carrying a homozygous H244R substitution in the C-terminus of XPA. They present with mild cutaneous manifestations of XP without skin cancer but suffer from marked neurological features, including cerebellar ataxia. We show that the mutant XPA protein has a severely weakened interaction with the transcription factor IIH (TFIIH) complex leading to an impaired association of the mutant XPA and the downstream endonuclease ERCC1-XPF with NER complexes. Despite these defects, the patient-derived fibroblasts and reconstituted knockout cells carrying the XPAH244R substitution show intermediate UV sensitivity and considerable levels of residual GG-NER (∼50%), in line with the intrinsic properties and activities of the purified protein. By contrast, XPA-H244R cells are exquisitely sensitive to transcription- blocking DNA damage, show no detectable recovery of transcription after UV irradiation, and display a severe deficiency in TC-NER-associated unscheduled DNA synthesis. Our characterization of a new case of XPA deficiency that interferes with TFIIH binding and primarily affects the transcription-coupled subpathway of nucleotide excision repair, provides an explanation of the dominant neurological features in these patients, and reveals a specific role for the C-terminus of XPA in TC-NER.
- Published
- 2023
13. Perspectives on ankle-foot technology for improving gait performance of children with Cerebral Palsy in daily-life: requirements, needs and wishes
- Author
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European Commission, Dutch Research Council, Agencia Estatal de Investigación (España), Ministerio de Ciencia e Innovación (España), Bayón, Cristina [0000-0003-1825-1265], Hoorn, Marleen van, Barrientos Cruz, Antonio [0000-0003-1691-3907], Rocon, Eduardo [0000-0001-9618-2176], Trost, Joyce P [0000-0002-0262-0444], Asseldonk, Edwin H. F. van, Bayón, Cristina, Barrientos, Antonio, Rocon de Lima, Eduardo, Trost, Joyce P, European Commission, Dutch Research Council, Agencia Estatal de Investigación (España), Ministerio de Ciencia e Innovación (España), Bayón, Cristina [0000-0003-1825-1265], Hoorn, Marleen van, Barrientos Cruz, Antonio [0000-0003-1691-3907], Rocon, Eduardo [0000-0001-9618-2176], Trost, Joyce P [0000-0002-0262-0444], Asseldonk, Edwin H. F. van, Bayón, Cristina, Barrientos, Antonio, Rocon de Lima, Eduardo, and Trost, Joyce P
- Abstract
Background: Ankle-foot orthoses (AFOs) are extensively used as a primary management method to assist ambulation of children with Cerebral Palsy (CP). However, there are certain barriers that hinder their prescription as well as their use as a mobility device in all kinds of daily-life activities. This exploratory research attempts to further understand the existing limitations of current AFOs to promote a better personalization of new design solutions. Methods: Stakeholders’ (professionals in CP and end-users with CP) perspectives on AFO technology were collected by two online surveys. Respondents evaluated the limitations of current assistive solutions and assessment methods, provided their expectations for a new AFO design, and analyzed the importance of different design features and metrics to enrich the gait performance of these patients in daily-life. Quantitative responses were rated and compared with respect to their perceived importance. Qualitative responses were classified into themes by using content analysis. Results: 130 survey responses from ten countries were analyzed, 94 from professionals and 36 from end-users with CP. The most highly rated design features by both stakeholder groups were the comfort and the ease of putting on and taking off the assistive device. In general, professionals preferred new features to enrich the independence of the patient by improving gait at functional levels. End-users also considered their social acceptance and participation. Health care professionals reported a lack of confidence concerning decision-making about AFO prescription. To some degree, this may be due to the reported inconsistent understanding of the type of assistance required for each pathological gait. Thus, they indicated that more information about patients’ day-to-day walking performance would be beneficial to assess patients’ capabilities. Conclusion: This study emphasizes the importance of developing new approaches to assess and treat CP gait in da
- Published
- 2023
14. Natural hypoxic conditions do not affect the respiration rates of the cold-water coral Desmophyllum pertusum (Lophelia pertusa) living in the Angola margin (Southeastern Atlantic Ocean)
- Author
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German Research Foundation, European Commission, UK Research and Innovation, Global Challenges Research Fund, One Ocean Hub, Generalitat de Catalunya, German Academic Exchange Service, Dutch Research Council, Ministero dell'Istruzione e del Merito, Agencia Estatal de Investigación (España), Gori, Andrea, Orejas, Covadonga, Mienis, Furu, Ferrier-Pagès, Christine, Flöter, Sebastian, Reynaud, Stéphanie, Sweetman, Andrew K., Roberts, John Murray, Wienberg, Claudia, Hebbeln, Dierk, German Research Foundation, European Commission, UK Research and Innovation, Global Challenges Research Fund, One Ocean Hub, Generalitat de Catalunya, German Academic Exchange Service, Dutch Research Council, Ministero dell'Istruzione e del Merito, Agencia Estatal de Investigación (España), Gori, Andrea, Orejas, Covadonga, Mienis, Furu, Ferrier-Pagès, Christine, Flöter, Sebastian, Reynaud, Stéphanie, Sweetman, Andrew K., Roberts, John Murray, Wienberg, Claudia, and Hebbeln, Dierk
- Abstract
arge, well-developed and flourishing reefs dominated by the cold-water coral Desmophyllum pertusum have recently been discovered along the Angola margin in the southeastern Atlantic Ocean living under very low oxygen concentrations (0.6–1.5 mL L−1). This study assessed the respiration rates of this coral in a short-term (10 days) aquarium experiment under naturally low oxygen concentrations (1.4 ± 0.5 mL L−1) as well as under saturated oxygen concentrations (6.1 ± 0.6 mL L−1). We found no significant difference in respiration rates between the two oxygen concentrations. Furthermore, the respiration rates of D. pertusum were in the same order of magnitude as those of the same species living under normoxic conditions in other areas. This work expands the current knowledge on the metabolic activity of cold-water corals under hypoxic conditions, evidencing that low oxygen conditions are not a general limiting factor for the overall distribution of D. pertusum
- Published
- 2023
15. Redox gradient shapes the abundance and diversity of mercury-methylating microorganisms along the water column of the Black Sea
- Author
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Institut de Recherche pour le Développement (France), Agencia Estatal de Investigación (España), Dutch Research Council, European Research Council, Cabrol, Léa, Capo, Eric, Vliet, Daan M. van, Meijenfeldt, F. A. Bastiaan von, Bertilsson, Stefan, Villanueva, Laura, Sánchez-Andrea, Irene, Björn, Erik, Bravo, Andrea G., Heimbürger-Boavida, Lars-Eric, Institut de Recherche pour le Développement (France), Agencia Estatal de Investigación (España), Dutch Research Council, European Research Council, Cabrol, Léa, Capo, Eric, Vliet, Daan M. van, Meijenfeldt, F. A. Bastiaan von, Bertilsson, Stefan, Villanueva, Laura, Sánchez-Andrea, Irene, Björn, Erik, Bravo, Andrea G., and Heimbürger-Boavida, Lars-Eric
- Abstract
In the global context of seawater deoxygenation triggered by climate change and anthropogenic activities, changes in redox gradients impacting biogeochemical transformations of pollutants, such as mercury, become more likely. Being the largest anoxic basin worldwide, with high concentrations of the potent neurotoxic methylmercury (MeHg), the Black Sea is an ideal natural laboratory to provide new insights about the link between dissolved oxygen concentration and hgcAB gene-carrying (hgc+) microorganisms involved in the formation of MeHg. We combined geochemical and microbial approaches to assess the effect of vertical redox gradients on abundance, diversity, and metabolic potential of hgc+ microorganisms in the Black Sea water column. The abundance of hgcA genes [congruently estimated by quantitative PCR (qPCR) and metagenomics] correlated with MeHg concentration, both maximal in the upper part of the anoxic water. Besides the predominant Desulfobacterales, hgc+ microorganisms belonged to a unique assemblage of diverse—previously underappreciated—anaerobic fermenters from Anaerolineales, Phycisphaerae (characteristic of the anoxic and sulfidic zone), Kiritimatiellales, and Bacteroidales (characteristic of the suboxic zone). The metabolic versatility of Desulfobacterota differed from strict sulfate reduction in the anoxic water to reduction of various electron acceptors in the suboxic water. Linking microbial activity and contaminant concentration in environmental studies is rare due to the complexity of biological pathways. In this study, we disentangle the role of oxygen in shaping the distribution of Hg-methylating microorganisms consistently with MeHg concentration, and we highlight their taxonomic and metabolic niche partitioning across redox gradients, improving the prediction of the response of marine communities to the expansion of oxygen-deficient zones
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- 2023
16. Mining archival data from wide-field astronomical surveys in search of near-Earth objects
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European Space Agency, European Commission, Ministerio de Ciencia, Innovación y Universidades (España), Dutch Research Council, Saifollahi, Teymoor, Verdoes Kleijn, Gijs, Williams, Rees, Micheli, Marco, Santana-Ros, Toni, Helmich, Ewout, Koschny, Detlef, Conversi, L., European Space Agency, European Commission, Ministerio de Ciencia, Innovación y Universidades (España), Dutch Research Council, Saifollahi, Teymoor, Verdoes Kleijn, Gijs, Williams, Rees, Micheli, Marco, Santana-Ros, Toni, Helmich, Ewout, Koschny, Detlef, and Conversi, L.
- Abstract
[Context] Increasing our knowledge of the orbits and compositions of near-earth objects (NEOs) is important for a better understanding of the evolution of the Solar System and life. The detection of serendipitous NEO appearances among the millions of archived exposures from large astronomical imaging surveys can provide a contribution which is complementary to NEO surveys., [Aims] Using the ASTROWISE information system, this work aims to assess the detectability rate, the achieved recovery rate and the quality of astrometry when data mining the European Southern Observatory (ESO) archive for the OmegaCAM wide-field imager at the VLT Survey Telescope (VST)., [Methods] We developed an automatic pipeline that searches for NEO appearances inside the ASTROWISE environment. Throughout the recovery process the pipeline uses several public web tools (SSOIS, NEODyS, JPL Horizons) to identify possible images that overlap with the positions of NEOs, and acquires information on the NEOs’ predicted position and other properties (e.g. magnitude, rate, and direction of motion) at the time of observations. Considering these properties, the pipeline narrows down the search to potentially detectable NEOs, searches for streak-like objects across the images, and finds a matching streak for the NEOs., [Results] We recovered 196 appearances of NEOs from a set of 968 appearances predicted to be recoverable. It includes appearances for three NEOs that were on the impact risk list at that point. These appearances occurred well before their discovery. The subsequent risk assessment using the extracted astrometry removes these NEOs from the risk list. More generally, we estimate a detectability rate of ~0.05 per NEO at a signal-to-noise ratio higher than 3 for NEOs in the OmegaCAM archive. Our automatic recovery rates are 40% and 20% for NEOs on the risk list and the full list, respectively. The achieved astrometric and photometric accuracy is on average 0.12″ and 0.1 mag., [Conclusions] These results show the high potential of the archival imaging data of the ground-based wide-field surveys as useful instruments for the search, (p)recovery, and characterization of NEOs. Highly automated approaches, as possible using ASTROWISE, make this undertaking feasible.
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- 2023
17. A disease-associated XPA allele interferes with TFIIH binding and primarily affects transcription-coupled nucleotide excision repair
- Author
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Leiden University, Dutch Research Council, European Research Council, Dutch Cancer Society, Junta de Andalucía, Institute for Basic Science (South Korea), National Cancer Institute (US), European Commission, Heuvel, Diana van den, Kim, Mihyun, Wondergem, Annelotte P., Meer, Paula J. van der, Witkamp, Myrèse, Lambregtse, Ferdy, Kim, Hyun-Suk, Kan, Folkert, Apelt, Katja, Kragten, Angela, González-Prieto, Román, Vertegaal, Alfred C. O., Yeo,Jung-Eun, Kim, Byung-Gyu, Doorn, Remco van, Schärer, Orlando D., Luijsterburg, Martijn S., Leiden University, Dutch Research Council, European Research Council, Dutch Cancer Society, Junta de Andalucía, Institute for Basic Science (South Korea), National Cancer Institute (US), European Commission, Heuvel, Diana van den, Kim, Mihyun, Wondergem, Annelotte P., Meer, Paula J. van der, Witkamp, Myrèse, Lambregtse, Ferdy, Kim, Hyun-Suk, Kan, Folkert, Apelt, Katja, Kragten, Angela, González-Prieto, Román, Vertegaal, Alfred C. O., Yeo,Jung-Eun, Kim, Byung-Gyu, Doorn, Remco van, Schärer, Orlando D., and Luijsterburg, Martijn S.
- Abstract
XPA is a central scaffold protein that coordinates the assembly of repair complexes in the global genome (GG-NER) and transcription-coupled nucleotide excision repair (TC-NER) subpathways. Inactivating mutations in XPA cause xeroderma pigmentosum (XP), which is characterized by extreme UV sensitivity and a highly elevated skin cancer risk. Here, we describe two Dutch siblings in their late forties carrying a homozygous H244R substitution in the C-terminus of XPA. They present with mild cutaneous manifestations of XP without skin cancer but suffer from marked neurological features, including cerebellar ataxia. We show that the mutant XPA protein has a severely weakened interaction with the transcription factor IIH (TFIIH) complex leading to an impaired association of the mutant XPA and the downstream endonuclease ERCC1-XPF with NER complexes. Despite these defects, the patient-derived fibroblasts and reconstituted knockout cells carrying the XPAH244R substitution show intermediate UV sensitivity and considerable levels of residual GG-NER (∼50%), in line with the intrinsic properties and activities of the purified protein. By contrast, XPA-H244R cells are exquisitely sensitive to transcription- blocking DNA damage, show no detectable recovery of transcription after UV irradiation, and display a severe deficiency in TC-NER-associated unscheduled DNA synthesis. Our characterization of a new case of XPA deficiency that interferes with TFIIH binding and primarily affects the transcription-coupled subpathway of nucleotide excision repair, provides an explanation of the dominant neurological features in these patients, and reveals a specific role for the C-terminus of XPA in TC-NER.
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- 2023
18. A facultative mutualism facilitates European seagrass meadows
- Author
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Dutch Research Council, de Fouw, Jimmy, Holmer, Marianne, Beca-Carretero, Pedro, Boström, Christoffer, Brice, Jessica, Brun, Fernando G., Cruijsen, Peter M. J. M., Govers, Laura L., Garmendia, Joxe Mikel, Meysik, Lukas, Pajusalu, Liina, Richir, Jonathan, Robroek, Bjorn, Valle, Mireia, van der Ven, Paul, Eklöf, Johan S., van der Heide, Tjisse, Dutch Research Council, de Fouw, Jimmy, Holmer, Marianne, Beca-Carretero, Pedro, Boström, Christoffer, Brice, Jessica, Brun, Fernando G., Cruijsen, Peter M. J. M., Govers, Laura L., Garmendia, Joxe Mikel, Meysik, Lukas, Pajusalu, Liina, Richir, Jonathan, Robroek, Bjorn, Valle, Mireia, van der Ven, Paul, Eklöf, Johan S., and van der Heide, Tjisse
- Abstract
Coastal ecosystem functioning often hinges on habitat-forming foundation species that engage in positive interactions (e.g. facilitation and mutualism) to reduce environmental stress. Seagrasses are important foundation species in coastal zones but are rapidly declining with losses typically linked to intensifying global change-related environmental stress. There is growing evidence that loss or disruption of positive interactions can amplify coastal ecosystem degradation as it compromises its stress mitigating capacity. Multiple recent studies highlight that seagrass can engage in a facultative mutualistic relationship with lucinid bivalves that alleviate sulphide toxicity. So far, however, the generality of this mutualism, and how its strength and relative importance depend on environmental conditions, remains to be investigated. Here we study the importance of the seagrass-lucinid mutualistic interaction on a continental-scale using a field survey across Europe. We found that the lucinid bivalve Loripes orbiculatus is associated with the seagrasses Zostera noltii and Zostera marina across a large latitudinal range. At locations where the average minimum temperature was above 1 °C, L. orbiculatus was present in 79% of the Zostera meadows; whereas, it was absent below this temperature. At locations above this minimum temperature threshold, mud content was the second most important determinant explaining the presence or absence of L. orbiculatus. Further analyses suggest that the presence of the lucinids have a positive effect on seagrass biomass by mitigating sulphide stress. Finally, results of a structural equation model (SEM) support the existence of a mutualistic feedback between L. orbiculatus and Z. noltii. We argue that this seagrass-lucinid mutualism should be more solidly integrated into management practices to improve seagrass ecosystem resilience to global change as well as the success of restoration efforts
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- 2023
19. Efficient CRISPR-Cas13d-Based antiviral strategy to combat SARS-CoV-2
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Dutch Research Council, Hussein, Mouraya, Andrade dos Ramos, Zaria, Vink, Monique A., Kroon, Pascal, Yu, Zhenghao, Enjuanes Sánchez, Luis, Zúñiga Lucas, Sonia, Berkhout, Ben, Herrera, Elena, Dutch Research Council, Hussein, Mouraya, Andrade dos Ramos, Zaria, Vink, Monique A., Kroon, Pascal, Yu, Zhenghao, Enjuanes Sánchez, Luis, Zúñiga Lucas, Sonia, Berkhout, Ben, and Herrera, Elena
- Abstract
The current SARS-CoV-2 pandemic forms a major global health burden. Although protective vaccines are available, concerns remain as new virus variants continue to appear. CRISPR-based gene-editing approaches offer an attractive therapeutic strategy as the CRISPR-RNA (crRNA) can be adjusted rapidly to accommodate a new viral genome sequence. This study aimed at using the RNA-targeting CRISPR-Cas13d system to attack highly conserved sequences in the viral RNA genome, thereby preparing for future zoonotic outbreaks of other coronaviruses. We designed 29 crRNAs targeting highly conserved sequences along the complete SARS-CoV-2 genome. Several crRNAs demonstrated efficient silencing of a reporter with the matching viral target sequence and efficient inhibition of a SARS-CoV-2 replicon. The crRNAs that suppress SARS-CoV-2 were also able to suppress SARS-CoV, thus demonstrating the breadth of this antiviral strategy. Strikingly, we observed that only crRNAs directed against the plus-genomic RNA demonstrated antiviral activity in the replicon assay, in contrast to those that bind the minus-genomic RNA, the replication intermediate. These results point to a major difference in the vulnerability and biology of the +RNA versus −RNA strands of the SARS-CoV-2 genome and provide important insights for the design of RNA-targeting antivirals.
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- 2023
20. A study of step defects on NiAl(110) using a curved single crystal surface
- Author
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Dutch Research Council, Netherlands Organization for Scientific Research, Research Foundation - Flanders, Piñeiros-Bastidas, Jessika M., Auras, Sabine V., Juurlink, Ludo B.F., Dutch Research Council, Netherlands Organization for Scientific Research, Research Foundation - Flanders, Piñeiros-Bastidas, Jessika M., Auras, Sabine V., and Juurlink, Ludo B.F.
- Abstract
In contrast to common flat single crystal surfaces, curved surfaces provide the opportunity to study a large range of vicinals using only one single crystal. Here, we employ a curved NiAl single crystal surface to study step defects on the (110) plane using scanning tunneling microscopy under UHV conditions and at room temperature. The direction of curvature is chosen to align with the alternating Al and Ni atom rows, and we image the surface at various positions along its curvature. With very few exceptions, we find only monoatomic step heights to occur with local step densities consistent with the expected values along the macroscopically curved surface. We use our home-built Python-based analysis script to analyze STM images and obtain statistical information on step and kink distributions, a.o. it allows us to determine the kink formation energy.
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- 2023
21. Steering self-organisation through confinement
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Fundação para a Ciência e a Tecnologia (Portugal), European Commission, Netherlands Organization for Scientific Research, US Army Research Office, Agence Nationale de la Recherche (France), European Research Council, Biotechnology and Biological Sciences Research Council (UK), Defense Advanced Research Projects Agency (US), Federal Ministry of Education and Research (Germany), Dutch Research Council, German Research Foundation, Ministerio de Economía y Competitividad (España), Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Leverhulme Trust, Fonds National de la Recherche Luxembourg, Fondation pour la Recherche Médicale, Office of Naval Research (US), Araújo, Nuno A. M., Janssen, Liesbeth M. C., Barois, Thomas, Boffetta, Guido, Cohen, Itai, Corbetta, Alessandro, Dauchot, Olivier, Dijkstra, Marjolein, Durham, William M., Dussutour, Audrey, Garnier, Simon, Gelderblom, Hanneke, Golestanian, Ramin, Isa, Lucio, Koenderink, Gijsje H., Löwen, Hartmut, Metzler, Ralf, Polin, Marco, Royall, C. Patrick, Šarić, Anđela, Sengupta, Anupam, Sykes, Cécile, Trianni, Vito, Tuval, Idan, Vogel, Nicolas, Yeomans, Julia M., Zuriguel, Iker, Marin, Alvaro, Volpe, Giorgio, Fundação para a Ciência e a Tecnologia (Portugal), European Commission, Netherlands Organization for Scientific Research, US Army Research Office, Agence Nationale de la Recherche (France), European Research Council, Biotechnology and Biological Sciences Research Council (UK), Defense Advanced Research Projects Agency (US), Federal Ministry of Education and Research (Germany), Dutch Research Council, German Research Foundation, Ministerio de Economía y Competitividad (España), Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), Leverhulme Trust, Fonds National de la Recherche Luxembourg, Fondation pour la Recherche Médicale, Office of Naval Research (US), Araújo, Nuno A. M., Janssen, Liesbeth M. C., Barois, Thomas, Boffetta, Guido, Cohen, Itai, Corbetta, Alessandro, Dauchot, Olivier, Dijkstra, Marjolein, Durham, William M., Dussutour, Audrey, Garnier, Simon, Gelderblom, Hanneke, Golestanian, Ramin, Isa, Lucio, Koenderink, Gijsje H., Löwen, Hartmut, Metzler, Ralf, Polin, Marco, Royall, C. Patrick, Šarić, Anđela, Sengupta, Anupam, Sykes, Cécile, Trianni, Vito, Tuval, Idan, Vogel, Nicolas, Yeomans, Julia M., Zuriguel, Iker, Marin, Alvaro, and Volpe, Giorgio
- Abstract
Self-organisation is the spontaneous emergence of spatio-temporal structures and patterns from the interaction of smaller individual units. Examples are found across many scales in very different systems and scientific disciplines, from physics, materials science and robotics to biology, geophysics and astronomy. Recent research has highlighted how self-organisation can be both mediated and controlled by confinement. Confinement is an action over a system that limits its units' translational and rotational degrees of freedom, thus also influencing the system's phase space probability density; it can function as either a catalyst or inhibitor of self-organisation. Confinement can then become a means to actively steer the emergence or suppression of collective phenomena in space and time. Here, to provide a common framework and perspective for future research, we examine the role of confinement in the self-organisation of soft-matter systems and identify overarching scientific challenges that need to be addressed to harness its full scientific and technological potential in soft matter and related fields. By drawing analogies with other disciplines, this framework will accelerate a common deeper understanding of self-organisation and trigger the development of innovative strategies to steer it using confinement, with impact on, e.g., the design of smarter materials, tissue engineering for biomedicine and in guiding active matter.
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- 2023
22. Systemic Inflammation and Normocytic Anemia in DOCK11 Deficiency
- Author
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European Research Council, European Commission, Vienna Science and Technology Fund, German Research Foundation, Austrian Academy of Sciences, Centre National de la Recherche Scientifique (France), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (Brasil), Wellcome Trust, Netherlands Organisation for Health Research and Development, Dutch Research Council, Austrian Research Promotion Agency, German Academic Exchange Service, European Molecular Biology Laboratory, National Center for Geriatrics and Gerontology (Japan), Genome Canada, Canadian Institutes of Health Research, Block, Jana, Rashkova, Christina, Castanon, Irinka, Zoghi, Samaneh, Platon, Jessica, Ardy,Rico C., Fujiwara, Mitsuhiro, Chaves, Beatriz, Schoppmeyer, Rouven, Made, Caspar I. van der, Jiménez-Heredia, Raúl, Harms, Frederike L., Alavi, Samin, Alsina, Laia, Sánchez-Moreno, Paula, Ávila Polo, Rainiero, Cabrera-Pérez, Rocío, Kostel Bal, Sevgi, Pfajfer, Laurène, Ransmayr, Bernhard, Mautner, Anna-Katharina, Kondo, Ryohei, Tinnacher, Anna, Caldera, Michael, Schuster, Michael, Domínguez-Conde, Cecilia, Platzer, René, Salzer, Elisabeth, Boyer, Thomas, Brunner, Han G., Nooitgedagt-Frons, Judith E., Iglesias, Estíbaliz, Deyá-Martinez, Ángela, Camacho-Lovillo, Marisol, Menche, Jörg, Bock, Christoph, Huppa, Johannes B., Pickl, Winfried F., Distel, Martin, Yoder, Jeffrey A., Traver, David, Engelhardt, Karin R., Linden, Tobias, Kager, Leo, Hannich, J. Thomas, Hoischen, Alexander, Hambleton, Sophie, Illsinger, Sabine, Da-Costa, Lydie, Kutsche, Kerstin, Chavoshzadeh, Zahra, van Buul, Jaap D., Antón, Jordi, Calzada-Hernández, Joan, Neth, Olaf, Viaud, Julien, Nishikimi, Akihiko, Dupré, Loïc, Boztug, Kaan, European Research Council, European Commission, Vienna Science and Technology Fund, German Research Foundation, Austrian Academy of Sciences, Centre National de la Recherche Scientifique (France), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (Brasil), Wellcome Trust, Netherlands Organisation for Health Research and Development, Dutch Research Council, Austrian Research Promotion Agency, German Academic Exchange Service, European Molecular Biology Laboratory, National Center for Geriatrics and Gerontology (Japan), Genome Canada, Canadian Institutes of Health Research, Block, Jana, Rashkova, Christina, Castanon, Irinka, Zoghi, Samaneh, Platon, Jessica, Ardy,Rico C., Fujiwara, Mitsuhiro, Chaves, Beatriz, Schoppmeyer, Rouven, Made, Caspar I. van der, Jiménez-Heredia, Raúl, Harms, Frederike L., Alavi, Samin, Alsina, Laia, Sánchez-Moreno, Paula, Ávila Polo, Rainiero, Cabrera-Pérez, Rocío, Kostel Bal, Sevgi, Pfajfer, Laurène, Ransmayr, Bernhard, Mautner, Anna-Katharina, Kondo, Ryohei, Tinnacher, Anna, Caldera, Michael, Schuster, Michael, Domínguez-Conde, Cecilia, Platzer, René, Salzer, Elisabeth, Boyer, Thomas, Brunner, Han G., Nooitgedagt-Frons, Judith E., Iglesias, Estíbaliz, Deyá-Martinez, Ángela, Camacho-Lovillo, Marisol, Menche, Jörg, Bock, Christoph, Huppa, Johannes B., Pickl, Winfried F., Distel, Martin, Yoder, Jeffrey A., Traver, David, Engelhardt, Karin R., Linden, Tobias, Kager, Leo, Hannich, J. Thomas, Hoischen, Alexander, Hambleton, Sophie, Illsinger, Sabine, Da-Costa, Lydie, Kutsche, Kerstin, Chavoshzadeh, Zahra, van Buul, Jaap D., Antón, Jordi, Calzada-Hernández, Joan, Neth, Olaf, Viaud, Julien, Nishikimi, Akihiko, Dupré, Loïc, and Boztug, Kaan
- Abstract
[BACKGROUND] Increasing evidence links genetic defects affecting actin-regulatory proteins to diseases with severe autoimmunity and autoinflammation, yet the underlying molecular mechanisms are poorly understood. Dedicator of cytokinesis 11 (DOCK11) activates the small Rho guanosine triphosphatase (GTPase) cell division cycle 42 (CDC42), a central regulator of actin cytoskeleton dynamics. The role of DOCK11 in human immune-cell function and disease remains unknown., [METHODS] We conducted genetic, immunologic, and molecular assays in four patients from four unrelated families who presented with infections, early-onset severe immune dysregulation, normocytic anemia of variable severity associated with anisopoikilocytosis, and developmental delay. Functional assays were performed in patient-derived cells, as well as in mouse and zebrafish models., [RESULTS] We identified rare, X-linked germline mutations in DOCK11 in the patients, leading to a loss of protein expression in two patients and impaired CDC42 activation in all four patients. Patient-derived T cells did not form filopodia and showed abnormal migration. In addition, the patient-derived T cells, as well as the T cells from Dock11-knockout mice, showed overt activation and production of proinflammatory cytokines that were associated with an increased degree of nuclear translocation of nuclear factor of activated T cell 1 (NFATc1). Anemia and aberrant erythrocyte morphologic features were recapitulated in a newly generated dock11-knockout zebrafish model, and anemia was amenable to rescue on ectopic expression of constitutively active CDC42., [CONCLUSIONS] Germline hemizygous loss-of-function mutations affecting the actin regulator DOCK11 were shown to cause a previously unknown inborn error of hematopoiesis and immunity characterized by severe immune dysregulation and systemic inflammation, recurrent infections, and anemia. (Funded by the European Research Council and others.)
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- 2023
23. Underground hydrogen storage: a review
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Dutch Research Council, Ministerio de Ciencia e Innovación (España), Natural Environment Research Council (UK), Miocic, J., Heinemann, N., Edlmann, K., Scafidi, J., Molaei, F., Alcalde, Juan, Dutch Research Council, Ministerio de Ciencia e Innovación (España), Natural Environment Research Council (UK), Miocic, J., Heinemann, N., Edlmann, K., Scafidi, J., Molaei, F., and Alcalde, Juan
- Abstract
Large-scale underground storage of hydrogen gas is expected to play a key role in the energy transition and in near future renewable energy systems. Despite this potential, experience in underground hydrogen storage remains limited. This work critically reviews the most important elements of this crucial technology, including hydrogen properties and their significance for subsurface operations, sources for hydrogen and historical hydrogen storage operations, to set the state of the art. The cyclical nature of hydrogen storage operations will produce pressure and stress changes within the reservoir that could affect the integrity of the well, the reservoir, the caprock and the entire subsurface storage complex. To minimize geomechanical leakage risks and optimize the storage operation it is crucial to understand the pressure and stress history of the storage site, to optimize well locations to manage pressure and to identify the reservoir-specific cushion gas to working gas ratio. Finally, we outline the major scientific and operational challenges required to ensure the safe and efficient deployment of underground hydrogen storage at a large scale.
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- 2023
24. Enabling secure subsurface storage in future energy systems: an introduction
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Ministerio de Ciencia e Innovación (España), Dutch Research Council, Engineering and Physical Sciences Research Council (UK), Miocic, J., Heinemann, N., Alcalde, Juan, Edlmann, K., Schultz, R. A., Ministerio de Ciencia e Innovación (España), Dutch Research Council, Engineering and Physical Sciences Research Council (UK), Miocic, J., Heinemann, N., Alcalde, Juan, Edlmann, K., and Schultz, R. A.
- Abstract
Geological structures in the subsurface have been used for the storage of energy and waste products for over a century. Depleted oil and gas fields, saline aquifers or engineered caverns in salt or crystalline rocks are used worldwide to store energy fluids intended to provide demand buffers and sustained energy supply. The transition of our energy system into a clean, renewable-based system will most likely require an expansion of these subsurface storage activities, to host a wide variety of energy products (e.g. natural gas, hydrogen, heat or waste energy products, like CO) to balance the inherent intermittence of the renewable energy supply. Ensuring the safety and effectiveness of these subsurface storage operations is therefore crucial to achieve the sought-after renewable energy transition while ensuring energy security.
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- 2023
25. The JWST PEARLS view of the El Gordo galaxy cluster and of the structure it magnifies
- Author
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National Aeronautics and Space Administration (US), United States-Israel Binational Science Foundation, National Science Foundation (US), Ministry of Science and Technology (Israel), Netherlands Research School for Astronomy, European Space Agency, Dutch Research Council, Frye, Brenda, Diego, José María, National Aeronautics and Space Administration (US), United States-Israel Binational Science Foundation, National Science Foundation (US), Ministry of Science and Technology (Israel), Netherlands Research School for Astronomy, European Space Agency, Dutch Research Council, Frye, Brenda, and Diego, José María
- Abstract
The massive galaxy cluster El Gordo (z = 0.87) imprints multitudes of gravitationally lensed arcs onto James Webb Space Telescope Near-Infrared Camera (NIRCam) images. Eight bands of NIRCam imaging were obtained in the "Prime Extragalactic Areas for Reionization and Lensing Science" ("PEARLS") program. Point-spread function–matched photometry across Hubble Space Telescope and NIRCam filters supplies new photometric redshifts. A new light-traces-mass lens model based on 56 image multiplicities identifies the two mass peaks and yields a mass estimate within 500 kpc of (7.0 ± 0.30) × 1014M⊙. A search for substructure in the 140 cluster members with spectroscopic redshifts confirms the two main mass components. The southeastern mass peak that contains the brightest cluster galaxy is more tightly bound than the northwestern one. The virial mass within 1.7 Mpc is (5.1 ± 0.60)×1014M⊙, lower than the lensing mass. A significant transverse velocity component could mean the virial mass is underestimated. We contribute one new member to the previously known z = 4.32 galaxy group. Intrinsic (delensed) positions of the five secure group members span a physical extent of ∼60 kpc. 13 additional candidates selected by spectroscopic/photometric constraints are small and faint, with a mean intrinsic luminosity ∼2.2 mag fainter than L*. NIRCam imaging admits a fairly wide range of brightnesses and morphologies for the group members, suggesting a more diverse galaxy population in this galaxy overdensity.
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- 2023
26. Autosomal Recessive Cerebellar Ataxias in Europe: Frequency, Onset, and Severity in 677 Patients
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European Commission, Federal Ministry of Education and Research (Germany), ZonMw, Dutch Research Council, Brain Foundation (The Netherlands), Jacques and Gloria Gossweiler Foundation, Radboud University, University of Tübingen, University of Szeged, Ministry of Innovation and Technology (Hungary), Research Foundation - Flanders, Ministero della Salute, Projekt DEAL, Traschütz, Andreas, Adarmes Gómez, A. D., Anheim, Mathieu, Baets, Jonathan, Falkenburger, Björn H., Gburek-Augustat, Janina, Doss, Sarah, Kamm, Christoph, Klivenyi, Peter, Grobe-Einsler, Marcus, Klopstock, Thomas, Minnerop, Martina, Münchau, Alexander, Pane, Chiara, Renaud, Mathilde, Santorelli, Filippo M., Schöls, Ludger, Timmann, Dagmar, Vielhaber, Stefan, Haack, Tobias B., Warrenburg, Bart van de, Zanni, Ginevra, Synofzik, Matthis, European Commission, Federal Ministry of Education and Research (Germany), ZonMw, Dutch Research Council, Brain Foundation (The Netherlands), Jacques and Gloria Gossweiler Foundation, Radboud University, University of Tübingen, University of Szeged, Ministry of Innovation and Technology (Hungary), Research Foundation - Flanders, Ministero della Salute, Projekt DEAL, Traschütz, Andreas, Adarmes Gómez, A. D., Anheim, Mathieu, Baets, Jonathan, Falkenburger, Björn H., Gburek-Augustat, Janina, Doss, Sarah, Kamm, Christoph, Klivenyi, Peter, Grobe-Einsler, Marcus, Klopstock, Thomas, Minnerop, Martina, Münchau, Alexander, Pane, Chiara, Renaud, Mathilde, Santorelli, Filippo M., Schöls, Ludger, Timmann, Dagmar, Vielhaber, Stefan, Haack, Tobias B., Warrenburg, Bart van de, Zanni, Ginevra, and Synofzik, Matthis
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- 2023
27. Hardware-efficient entangled measurements for variational quantum algorithms
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Consejo Superior de Investigaciones Científicas (España), European Commission, Dutch Research Council, Agencia Nacional de Investigación y Desarrollo (Chile), Comunidad de Madrid, Escudero, Francisco [0000-0001-5982-1127], Fernández-Fernández, David [0000-0001-7163-8464], Jaumà, Gabriel [0000-0003-1996-5438], #NODATA#, Pereira, Luciano [0000-0003-1183-2382], Escudero, Francisco, Fernández-Fernández, David, Jaumà, Gabriel, Peñas, Guillermo F., Pereira, Luciano, Consejo Superior de Investigaciones Científicas (España), European Commission, Dutch Research Council, Agencia Nacional de Investigación y Desarrollo (Chile), Comunidad de Madrid, Escudero, Francisco [0000-0001-5982-1127], Fernández-Fernández, David [0000-0001-7163-8464], Jaumà, Gabriel [0000-0003-1996-5438], #NODATA#, Pereira, Luciano [0000-0003-1183-2382], Escudero, Francisco, Fernández-Fernández, David, Jaumà, Gabriel, Peñas, Guillermo F., and Pereira, Luciano
- Abstract
Variational algorithms have received significant attention in recent years due to their potential to solve practical problems using noisy intermediate-scale quantum (NISQ) devices. A fundamental step of these algorithms is the evaluation of the expected value of Hamiltonians, and hence efficient schemes to perform this task are required. The standard approach employs local measurements of Pauli operators and requires a large number of circuits. An alternative is to make use of entangled measurements, which might introduce additional gates between physically disconnected qubits that harm the performance. As a solution to this problem, we propose hardware-efficient entangled measurements (HEEM), that is, measurements that permit only entanglement between physically connected qubits. We show that this strategy enhances the evaluation of molecular Hamiltonians in NISQ devices by reducing the number of circuits required without increasing their depth. We provide quantitative metrics of how this approach offers better results than local measurements and arbitrarily entangled measurements. We estimate the ground-state energy of the H$_2$O molecule with classical simulators and quantum hardware using the variational quantum eigensolver with HEEM.
- Published
- 2023
28. Matter ejections behind the highs and lows of the transitional millisecond pulsar PSR J1023+0038
- Author
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Ministerio de Ciencia, Innovación y Universidades (España), Ministerio de Ciencia e Innovación (España), European Commission, European Research Council, Generalitat de Catalunya, Agencia Estatal de Investigación (España), Istituto Nazionale di Astrofisica, Ministero dell'Istruzione, dell'Università e della Ricerca, National Natural Science Foundation of China, Agenzia Spaziale Italiana, Dutch Research Council, Baglio, Maria Cristina, Coti Zelati, Francesco, Campana, Sergio, Busquet, Gemma, D'Avanzo, P., Giarratana, Stefano, Giroletti, Marcello, Ambrosino, Filippo, Crespi, Samuele, Miraval Zanon, Arianna, Hou, Xian, Li, Di, Li, Jian, Wang, Ping, Russell, David M., Torres, Diego F., Alabarta, K., Casella, P., Covino, Stefano, Bramich, D. M., Martino, Domitilla de, Méndez, Mariano, Motta, S. E., Papitto, Alessandro, Saikia, P., Vincentelli, Federico, Ministerio de Ciencia, Innovación y Universidades (España), Ministerio de Ciencia e Innovación (España), European Commission, European Research Council, Generalitat de Catalunya, Agencia Estatal de Investigación (España), Istituto Nazionale di Astrofisica, Ministero dell'Istruzione, dell'Università e della Ricerca, National Natural Science Foundation of China, Agenzia Spaziale Italiana, Dutch Research Council, Baglio, Maria Cristina, Coti Zelati, Francesco, Campana, Sergio, Busquet, Gemma, D'Avanzo, P., Giarratana, Stefano, Giroletti, Marcello, Ambrosino, Filippo, Crespi, Samuele, Miraval Zanon, Arianna, Hou, Xian, Li, Di, Li, Jian, Wang, Ping, Russell, David M., Torres, Diego F., Alabarta, K., Casella, P., Covino, Stefano, Bramich, D. M., Martino, Domitilla de, Méndez, Mariano, Motta, S. E., Papitto, Alessandro, Saikia, P., and Vincentelli, Federico
- Abstract
Transitional millisecond pulsars are an emerging class of sources that link low-mass X-ray binaries to millisecond radio pulsars in binary systems. These pulsars alternate between a radio pulsar state and an active low-luminosity X-ray disc state. During the active state, these sources exhibit two distinct emission modes (high and low) that alternate unpredictably, abruptly, and incessantly. X-ray to optical pulsations are observed only during the high mode. The root cause of this puzzling behaviour remains elusive. This paper presents the results of the most extensive multi-wavelength campaign ever conducted on the transitional pulsar prototype, PSR J1023+0038, covering from the radio to X-rays. The campaign was carried out over two nights in June 2021 and involved 12 different telescopes and instruments, including XMM-Newton, HST, VLT/FORS2 (in polarimetric mode), ALMA, VLA, and FAST. By modelling the broadband spectral energy distributions in both emission modes, we show that the mode switches are caused by changes in the innermost region of the accretion disc. These changes trigger the emission of discrete mass ejections, which occur on top of a compact jet, as testified by the detection of at least one short-duration millimetre flare with ALMA at the high-to-low mode switch. The pulsar is subsequently re-enshrouded, completing our picture of the mode switches.
- Published
- 2023
29. Direct Measurement of the Local Density of Optical States in the Time Domain
- Author
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Dutch Research Council, Ministerio de Ciencia e Innovación (España), Ter Huurne, Stan E. T. [0000-0002-7488-043X], Sánchez-Gil, José A. [0000-0002-5370-3717], Rivas, Jaime Gómez [0000-0002-8038-0968], Ter Huurne, Stan E. T., Peeters, Djero B. L., Sánchez-Gil, José A., Rivas, Jaime Gómez, Dutch Research Council, Ministerio de Ciencia e Innovación (España), Ter Huurne, Stan E. T. [0000-0002-7488-043X], Sánchez-Gil, José A. [0000-0002-5370-3717], Rivas, Jaime Gómez [0000-0002-8038-0968], Ter Huurne, Stan E. T., Peeters, Djero B. L., Sánchez-Gil, José A., and Rivas, Jaime Gómez
- Abstract
One of the most fundamental and relevant properties of a photonic system is the local density of optical states (LDOS) as it defines the rate at which an excited emitter dissipates energy by coupling to its surrounding. However, the direct determination of the LDOS is challenging as it requires measurements of the complex electric field of a point dipole at its own position. We introduce here a near-field setup which can measure the terahertz electric field amplitude at the position of a point source in the time domain. From the measured amplitude, the frequency-dependent imaginary component of the electric field can be determined and the LDOS can be retrieved. As a proof of concept, this setup has been used to measure the partial LDOS (the LDOS for a defined dipole orientation) as a function of the distance to planar interfaces made of gold, InSb, and quartz. Furthermore, the spatially dependent partial LDOS of a resonant gold rod has been measured as well. These results have been compared with analytical results and simulations. The excellent agreement between measurements and theory demonstrates the applicability of this setup for the quantitative determination of the LDOS in complex photonic systems.
- Published
- 2023
30. Late Cenozoic sea-surface-temperature evolution of the South Atlantic Ocean
- Author
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International Ocean Discovery Program, Ministerio de Ciencia e Innovación (España), Dutch Research Council, Hoem, Frida S., López-Quirós, Adrián, Van De Lagemaat, Suzanna, Etourneau, Johan, Sicre, Marie-Alexandrine, Escutia, Carlota, Brinkhuis, Henk, Peterse, Francien, Sangiorgi, Francesca, Bijl, Peter K., International Ocean Discovery Program, Ministerio de Ciencia e Innovación (España), Dutch Research Council, Hoem, Frida S., López-Quirós, Adrián, Van De Lagemaat, Suzanna, Etourneau, Johan, Sicre, Marie-Alexandrine, Escutia, Carlota, Brinkhuis, Henk, Peterse, Francien, Sangiorgi, Francesca, and Bijl, Peter K.
- Abstract
At present, a strong latitudinal sea-surface-temperature (SST) gradient of g1/4g€¯16g€¯g exists across the Southern Ocean, maintained by the Antarctic Circumpolar Current (ACC) and a set of complex frontal systems. Together with the Antarctic ice masses, this system has formed one of the most important global climate regulators. The timing of the onset of the ACC system, its development towards modern-day strength and the consequences for the latitudinal SST gradient around the southern Atlantic Ocean are still uncertain. Here we present new TEX86 (TetraEther indeX of tetraethers consisting of 86 carbon atoms)-derived SST records from two sites located east of Drake Passage (south-western South Atlantic) to assist in better understanding two critical time intervals of prominent climate transitions during the Cenozoic: the late Eocene-early Oligocene (Ocean Drilling Program, ODP, Site 696) and Middle-Late Miocene (IODP Site U1536) transitions. Our results show temperate conditions (20-11g€¯g) during the first time interval, with a weaker latitudinal SST gradient (g1/4g€¯8g€¯g) across the Atlantic sector of the Southern Ocean compared to present day. We ascribe the similarity in SSTs between Sites 696 and 511 in the late Eocene-early Oligocene South Atlantic to a persistent, strong subpolar gyre circulation connecting the sites, which can only exist in the absence of a strong throughflow across the Drake Passage. Surprisingly, the southern South Atlantic record Site 696 shows comparable SSTs (g1/4g€¯12-14g€¯g) during both the earliest Oligocene oxygen isotope step (EOIS, g1/4g€¯33.65g€¯Ma) and the Miocene Climatic Optimum (MCO, g1/4g€¯16.5g€¯Ma). Apparently, maximum Oligocene Antarctic ice volume could coexist with warm ice-proximal surface ocean conditions, while at similar ocean temperatures, the Middle Miocene Antarctic ice sheet was likely reduced. Only a few Middle-Late Miocene (discontinuous) high-latitude records exist due to ice advances causing unconformities
- Published
- 2023
31. Exploring the surface-enhanced Raman scattering (SERS) activity of gold nanostructures embedded around nanogaps at wafer scale: Simulations and experiments
- Author
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European Commission, Agencia Estatal de Investigación (España), Ministerio de Ciencia, Innovación y Universidades (España), Dutch Research Council, Lafuente, Marta, Muñoz, Pablo, Berenschot, Erwin J. W., Tiggelaar, Roald M., Susarrey-Arce, Arturo, Rodrigo, Sergio G., Kooijman, Lucas J., García-Blanco, Sonia M., Mallada, Reyes, Pina, María Pilar, Tas, Niels R., European Commission, Agencia Estatal de Investigación (España), Ministerio de Ciencia, Innovación y Universidades (España), Dutch Research Council, Lafuente, Marta, Muñoz, Pablo, Berenschot, Erwin J. W., Tiggelaar, Roald M., Susarrey-Arce, Arturo, Rodrigo, Sergio G., Kooijman, Lucas J., García-Blanco, Sonia M., Mallada, Reyes, Pina, María Pilar, and Tas, Niels R.
- Abstract
A unique way of converting free space light into a local electromagnetic field in small spaces is via metallic nanostructuring. In this work fabrication, experimental characterization and simulation of surface-enhanced Raman scattering (SERS) active specimens based on Au nanostructures are discussed. We used displacement Talbot lithography (DTL) to fabricate silicon nano-wedge substrates with Au nanostructures embedded around their apices. After the ion beam etching process, a nanogap is introduced between two Au nanostructures templated over nano-wedges, yielding specimens with SERS characteristics. The Au nanostructures and the nanogaps have symmetric and asymmetric configurations with respect to the wedges. With this nanofabrication method, various wafer-scale specimens were fabricated with highly controllable nanogaps with a size in the order of 6 nm for symmetric gaps and 8 nm for asymmetric gaps. SERS characteristics of these specimens were analyzed experimentally by calculating their analytical enhancement factor (AEF). According to finite-difference time-domain (FDTD) simulations, the Raman enhancement arises at the narrow gap due to plasmonic resonances, yielding a maximum AEF of 6.9 × 106. The results highlight the SERS activity of the nanostructures and ultimately comply with reliable substrates for practical applications.
- Published
- 2023
32. Ultra-low hysteresis in giant magnetocaloric Mn1-xVxFe0.95(P,Si,B) compounds
- Author
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European Commission, Dutch Research Council, Natural Science Foundation of Guangdong Province, Ministerio de Ciencia, Innovación y Universidades (España), Law, J.Y.[0000-0002-1431-6773], Franco, V.[ 0000-0003-3028-6815], Lai, J., You, X., Law, J.Y., Franco, V., Huang, B., Bessas, D., Maschek, M., Zeng, D., van Dijk, N., Brück, E., European Commission, Dutch Research Council, Natural Science Foundation of Guangdong Province, Ministerio de Ciencia, Innovación y Universidades (España), Law, J.Y.[0000-0002-1431-6773], Franco, V.[ 0000-0003-3028-6815], Lai, J., You, X., Law, J.Y., Franco, V., Huang, B., Bessas, D., Maschek, M., Zeng, D., van Dijk, N., and Brück, E.
- Abstract
Large thermal hysteresis in the (Mn,Fe)2(P,Si) system hinders an efficient heat exchange and thus limits the magnetocaloric applications. Substitution of manganese by vanadium in the Mn1-x1Vx1Fe0.95P0.593Si0.33B0.077 and Mn1-x2Vx2Fe0.95P0.563Si0.36B0.077 compounds enable a significant reduction in the thermal hysteresis without losing the giant magnetocaloric effect. For the composition closest to the critical one, where first-order crossovers to second-order phase transition in the series of x2 = 0.02, Mn0.98V0.02Fe0.95P0.563Si0.36B0.077 exhibits a thermal hysteresis that is reduced from 1.5 to 0.5 K by 67%, yielding an adiabatic temperature change of 2.3 K and magnetic entropy change of 5.6 J/kgK for an applied field of 1 T, which demonstrates its potential for highly efficient magnetic heat pumps utilizing low-cost permanent magnets.
- Published
- 2023
33. Synthesis and antimicrobial activity of aminoalkyl resveratrol derivatives inspired by cationic peptides.
- Author
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Junta de Andalucía, Dutch Research Council, Fundación Ramón Areces, Netherlands Organization for Scientific Research, Cebrián, Rubén, Lucas, Ricardo, Fernández-Cantosa, María Victoria, Slot, Koen, Peñalver, Pablo, Martínez-García, Marta, Parraga-Leo, A., de Paz, Violante, García, Federico, Kuipers, O. P., Morales, Juan Carlos, Junta de Andalucía, Dutch Research Council, Fundación Ramón Areces, Netherlands Organization for Scientific Research, Cebrián, Rubén, Lucas, Ricardo, Fernández-Cantosa, María Victoria, Slot, Koen, Peñalver, Pablo, Martínez-García, Marta, Parraga-Leo, A., de Paz, Violante, García, Federico, Kuipers, O. P., and Morales, Juan Carlos
- Abstract
Antimicrobial resistance is a global concern, far from being resolved. The need of new drugs against new targets is imminent. In this work, we present a family of aminoalkyl resveratrol derivatives with antibacterial activity inspired by the properties of cationic amphipathic antimicrobial peptides. Surprisingly, the newly designed molecules display modest activity against aerobically growing bacteria but show surprisingly good antimicrobial activity against anaerobic bacteria (Gram-negative and Gram-positive) suggesting specificity towards this bacterial group. Preliminary studies into the action mechanism suggest that activity takes place at the membrane level, while no cross-resistance with traditional antibiotics is observed. Actually, some good synergistic relations with existing antibiotics were found against Gram-negative pathogens. However, some cytotoxicity was observed, despite their low haemolytic activity. Our results show the importance of the balance between positively charged moieties and hydrophobicity to improve antimicrobial activity, setting the stage for the design of new drugs based on these molecules.
- Published
- 2023
34. Chemically Tuning Resveratrol for the Effective Killing of Gram- Positive Pathogens
- Author
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Universidad de Sevilla. Departamento de Química Orgánica y Farmacéutica, Junta de Andalucía, Dutch Research Council, Cebrián, Rubén, Li, Qian, Peñalver, Pablo, Belmonte Reche, Efres, Andrés Bilbao, María, Lucas Rodríguez, Ricardo, Paz Báñez, María Violante de, Kuipers, Oscar P., Morales, Juan Carlos, Universidad de Sevilla. Departamento de Química Orgánica y Farmacéutica, Junta de Andalucía, Dutch Research Council, Cebrián, Rubén, Li, Qian, Peñalver, Pablo, Belmonte Reche, Efres, Andrés Bilbao, María, Lucas Rodríguez, Ricardo, Paz Báñez, María Violante de, Kuipers, Oscar P., and Morales, Juan Carlos
- Abstract
In the era of antimicrobial resistance, the identification of new compounds with strong antimicrobial activity and the development of alternative therapies to fight drug-resistant bacteria are urgently needed. Here, we have used resveratrol, a safe and well-known plant-derived stilbene with poor antimicrobial properties, as a scaffold to design several new families of antimicrobials by adding different chemical entities at specific positions. We have characterized the mode of action of the most active compounds prepared and have examined their synergistic antibacterial activity in combination with traditional antibiotics. Some alkyl- and silyl-resveratrol derivatives show bactericidal activity against Gram-positive bacteria in the same low micromolar range of traditional antibiotics, with an original mechanism of action that combines membrane permeability activity with ionophore-related activities. No cross-resistance or antagonistic effect was observed with traditional antibiotics. Synergism was observed for some specific general-use antibiotics, such as aminoglycosides and cationic antimicrobial peptide antibiotics. No hemolytic activity was observed at the active concentrations or above, although some low toxicity against an MRC-5 cell line was noted.
- Published
- 2022
35. XPC–PARP complexes engage the chromatin remodeler ALC1 to catalyze global genome DNA damage repair
- Author
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Universidad de Sevilla. Departamento de Biología Celular, Deutsche Forschungsgemeinschaft / German Research Foundation (DFG), Dutch Cancer Society, European Research Council (ERC), Netherlands Organization for Scientific Research, Institute of Basic Science (IBS). Korea, Natural Sciences and Engineering Research Council of Canada (NSERC), Israel Cancer Research Fund Research Career Development Award, Israel Cancer Association, Israel Science Foundation, Dutch Research Council, National Cancer Institute (USA), Blessing, Charlotte, Apelt, Katja, Van Den Heuvel, Diana, González Leal, Claudia, Rother, Magdalena B, Van Der Woude, Melanie, González Prieto, Román, Luijsterburg, Martijn S., Universidad de Sevilla. Departamento de Biología Celular, Deutsche Forschungsgemeinschaft / German Research Foundation (DFG), Dutch Cancer Society, European Research Council (ERC), Netherlands Organization for Scientific Research, Institute of Basic Science (IBS). Korea, Natural Sciences and Engineering Research Council of Canada (NSERC), Israel Cancer Research Fund Research Career Development Award, Israel Cancer Association, Israel Science Foundation, Dutch Research Council, National Cancer Institute (USA), Blessing, Charlotte, Apelt, Katja, Van Den Heuvel, Diana, González Leal, Claudia, Rother, Magdalena B, Van Der Woude, Melanie, González Prieto, Román, and Luijsterburg, Martijn S.
- Abstract
Cells employ global genome nucleotide excision repair (GGR) to eliminate a broad spectrum of DNA lesions, including those induced by UV light. The lesion-recognition factor XPC initiates repair of helix-destabilizing DNA lesions, but binds poorly to lesions such as CPDs that do not destabilize DNA. How difficult-to-repair lesions are detected in chromatin is unknown. Here, we identify the poly-(ADP-ribose) polymerases PARP1 and PARP2 as constitutive interactors of XPC. Their interaction results in the XPC-stimulated synthesis of poly-(ADP-ribose) (PAR) by PARP1 at UV lesions, which in turn enables the recruitment and activation of the PAR-regulated chromatin remodeler ALC1. PARP2, on the other hand, modulates the retention of ALC1 at DNA damage sites. Notably, ALC1 mediates chromatin expansion at UV-induced DNA lesions, leading to the timely clearing of CPD lesions. Thus, we reveal how chromatin containing difficult-to-repair DNA lesions is primed for repair, providing insight into mechanisms of chromatin plasticity during GGR.
- Published
- 2022
36. Sea ice fluctuations in the Baffin Bay and the Labrador Sea during glacial abrupt climate changes
- Author
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European Commission, National Science Foundation (US), Fonds de La Recherche Scientifique (Belgique), Research Foundation - Flanders, National Research Council of Canada, Chinese Academy of Sciences, Innovation Fund Denmark, Institut Polaire Français Paul Emile Victor, Centre National de la Recherche Scientifique (France), Commissariat à l'Ènergie Atomique et aux Ènergies Alternatives (France), Agence Nationale de la Recherche (France), Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (Germany), Icelandic Centre for Research, National Institute of Polar Research (Japan), Korea Polar Research Institute, Dutch Research Council, Swedish Research Council, Swiss National Science Foundation, Natural Environment Research Council (UK), Scoto, Federico, Sadatzki, Henrik, Maffezzoli, Niccolò, Barbante, Carlo, Gagliardi, Alessandro, Varin, Cristiano, Vallelonga, Paul, Gkinis, Vasileios, Dahl-Jensen, Dorthe, Kjær, Helle Astrid, Burgay, François, Saiz-Lopez, A., Stein, Ruediger, Spolaor, Andrea, European Commission, National Science Foundation (US), Fonds de La Recherche Scientifique (Belgique), Research Foundation - Flanders, National Research Council of Canada, Chinese Academy of Sciences, Innovation Fund Denmark, Institut Polaire Français Paul Emile Victor, Centre National de la Recherche Scientifique (France), Commissariat à l'Ènergie Atomique et aux Ènergies Alternatives (France), Agence Nationale de la Recherche (France), Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (Germany), Icelandic Centre for Research, National Institute of Polar Research (Japan), Korea Polar Research Institute, Dutch Research Council, Swedish Research Council, Swiss National Science Foundation, Natural Environment Research Council (UK), Scoto, Federico, Sadatzki, Henrik, Maffezzoli, Niccolò, Barbante, Carlo, Gagliardi, Alessandro, Varin, Cristiano, Vallelonga, Paul, Gkinis, Vasileios, Dahl-Jensen, Dorthe, Kjær, Helle Astrid, Burgay, François, Saiz-Lopez, A., Stein, Ruediger, and Spolaor, Andrea
- Abstract
Sea ice decline in the North Atlantic and Nordic Seas has been proposed to contribute to the repeated abrupt atmospheric warmings recorded in Greenland ice cores during the last glacial period, known as Dansgaard-Oeschger (D-O) events. However, the understanding of how sea ice changes were coupled with abrupt climate changes during D-O events has remained incomplete due to a lack of suitable high-resolution sea ice proxy records from northwestern North Atlantic regions. Here, we present a subdecadal-scale bromine enrichment (Brenr) record from the NEEM ice core (Northwest Greenland) and sediment core biomarker records to reconstruct the variability of seasonal sea ice in the Baffin Bay and Labrador Sea over a suite of D-O events between 34 and 42 ka. Our results reveal repeated shifts between stable, multiyear sea ice (MYSI) conditions during cold stadials and unstable, seasonal sea ice conditions during warmer interstadials. The shift from stadial to interstadial sea ice conditions occurred rapidly and synchronously with the atmospheric warming over Greenland, while the amplitude of high-frequency sea ice fluctuations increased through interstadials. Our findings suggest that the rapid replacement of widespread MYSI with seasonal sea ice amplified the abrupt climate warming over the course of D-O events and highlight the role of feedbacks associated with late-interstadial seasonal sea ice expansion in driving the North Atlantic ocean-climate system back to stadial conditions.
- Published
- 2022
37. Measuring ventral nerve cord stiffness in live flat-dissected Drosophila embryos by atomic force microscopy
- Author
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Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Generalitat de Catalunya, Fundación Ramón Areces, European Commission, Dutch Research Council, Karkali, Katerina, Jorba, Ignasi, Navajas, Daniel, Martín-Blanco, Enrique, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Generalitat de Catalunya, Fundación Ramón Areces, European Commission, Dutch Research Council, Karkali, Katerina, Jorba, Ignasi, Navajas, Daniel, and Martín-Blanco, Enrique
- Abstract
Drosophila is an amenable system for addressing the mechanics of morphogenesis. We describe a workflow for characterizing the mechanical properties of its ventral nerve cord (VNC), at different developmental stages, in live, flat-dissected embryos employing atomic force microscopy (AFM). AFM is performed with spherical probes, and stiffness (Young’s modulus) is calculated by fitting force curves with Hertz’s contact model.
- Published
- 2022
38. Interspecific differences in microhabitat use expose insects to contrasting thermal mortality
- Author
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Ministerio de Asuntos Económicos y Transformación Digital (España), Ministerio de Ciencia e Innovación (España), Generalitat de Catalunya, Dutch Research Council, Vives-Ingla, María, Sala-García, Javier, Stefanescu, Constantí, Casadó-Tortosa, Armand, García, Meritxell, Peñuelas, Josep, Carnicer, Jofre, Ministerio de Asuntos Económicos y Transformación Digital (España), Ministerio de Ciencia e Innovación (España), Generalitat de Catalunya, Dutch Research Council, Vives-Ingla, María, Sala-García, Javier, Stefanescu, Constantí, Casadó-Tortosa, Armand, García, Meritxell, Peñuelas, Josep, and Carnicer, Jofre
- Abstract
Ecotones linking open and forested habitats contain multiple microhabitats with varying vegetal structures and microclimatic regimes. Ecotones host many insect species whose development is intimately linked to the microclimatic conditions where they grow (e.g., the leaves of their host plants and the surrounding air). Yet microclimatic heterogeneity at these fine scales and its effects on insects remain poorly quantified for most species. Here we studied how interspecific differences in the use of microhabitats across ecotones lead to contrasting thermal exposure and survival costs between two closely-related butterflies (Pieris napi and P. rapae). We first assessed whether butterflies selected different microhabitats to oviposit and quantified the thermal conditions at the microhabitat and foliar scales. We also assessed concurrent changes in the quality and availability of host plants. Finally, we quantified larval time of death under different experimental temperatures (thermal death time [TDT] curves) to predict their thermal mortality considering both the intensity and the duration of the microclimatic heat challenges in the field. We identified six processes determining larval thermal exposure at fine scales associated with butterfly oviposition behavior, canopy shading, and heat and water fluxes at the soil and foliar levels. Leaves in open microhabitats could reach temperatures 3–10 C warmer than the surrounding air while more closed microhabitats presented more buffered and homogeneous temperatures. Interspecific differences in microhabitat use matched the TDT curves and the thermal mortality in the field. Open microhabitats posed acute heat challenges that were better withstood by the thermotolerant butterfly, P. rapae, where the species mainly laid their eggs. Despite being more thermosensitive, P. napi was predicted to present higher survivals than P. rapae due to the thermal buffering provided by their selected microhabitats. However, its offspring coul
- Published
- 2022
39. Questioning Glutamate Excitotoxicity in Acute Brain Damage: The Importance of Spreading Depolarization
- Author
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Heart and Stroke Foundation of Canada, Natural Sciences and Engineering Research Council of Canada, National Research, Development and Innovation Office (Hungary), European Commission, Dutch Research Council, Andrew, R.D., Farkas, E., Hartings, Jed A., Brennan, K. C., Herreras, Óscar, Müller, M., Kirov, S. A., Ayata, C., Ollen-Bittle, N., Reiffurth, Clemens, Revah, O., Robertson, R.M., Dawson-Scully, K.D., Ullah, Dreier, Jens P., Heart and Stroke Foundation of Canada, Natural Sciences and Engineering Research Council of Canada, National Research, Development and Innovation Office (Hungary), European Commission, Dutch Research Council, Andrew, R.D., Farkas, E., Hartings, Jed A., Brennan, K. C., Herreras, Óscar, Müller, M., Kirov, S. A., Ayata, C., Ollen-Bittle, N., Reiffurth, Clemens, Revah, O., Robertson, R.M., Dawson-Scully, K.D., Ullah, and Dreier, Jens P.
- Abstract
Background: Within 2 min of severe ischemia, spreading depolarization (SD) propagates like a wave through compromised gray matter of the higher brain. More SDs arise over hours in adjacent tissue, expanding the neuronal damage. This period represents a therapeutic window to inhibit SD and so reduce impending tissue injury. Yet most neuroscientists assume that the course of early brain injury can be explained by glutamate excitotoxicity, the concept that immediate glutamate release promotes early and downstream brain injury. There are many problems with glutamate release being the unseen culprit, the most practical being that the concept has yielded zero therapeutics over the past 30 years. But the basic science is also flawed, arising from dubious foundational observations beginning in the 1950s Methods: Literature pertaining to excitotoxicity and to SD over the past 60 years is critiqued. Results: Excitotoxicity theory centers on the immediate and excessive release of glutamate with resulting neuronal hyperexcitation. This instigates poststroke cascades with subsequent secondary neuronal injury. By contrast, SD theory argues that although SD evokes some brief glutamate release, acute neuronal damage and the subsequent cascade of injury to neurons are elicited by the metabolic stress of SD, not by excessive glutamate release. The challenge we present here is to find new clinical targets based on more informed basic science. This is motivated by the continuing failure by neuroscientists and by industry to develop drugs that can reduce brain injury following ischemic stroke, traumatic brain injury, or sudden cardiac arrest. One important step is to recognize that SD plays a central role in promoting early neuronal damage. We argue that uncovering the molecular biology of SD initiation and propagation is essential because ischemic neurons are usually not acutely injured unless SD propagates through them. The role of glutamate excitotoxicity theory and how it has shaped
- Published
- 2022
40. XPC–PARP complexes engage the chromatin remodeler ALC1 to catalyze global genome DNA damage repair
- Author
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National Institutes of Health (US), Netherlands Organization for Scientific Research, German Research Foundation, Dutch Cancer Society, European Research Council, International Cancer Genome Consortium, Israel Science Foundation, National Cancer Institute (US), Université Laval, Natural Sciences and Engineering Research Council of Canada, Israel Cancer Research Fund, Israel Cancer Association USA, Dutch Research Council, Blessing, Charlotte, Apelt, Katja, Heuvel, Diana van den, González-Leal, Claudia, Rother, Magdalena B., Woude, Melanie van der, González-Prieto, Román, Yifrach, Adi, Parnas, Avital, Shah, Rashmi G., Kuo, Tia Tyrsett, Boer, Daphne E. C., Cai, Jin, Kragten, Angela, Kim, Hyun-Suk, Schärer, Orlando D., Vertegaal, Alfred C. O., Shah, Girish M., Adar, Sheera, Lans, Hannes, Attikum, Haico van, Ladurner, Andreas G., Luijsterburg, Martijn S., National Institutes of Health (US), Netherlands Organization for Scientific Research, German Research Foundation, Dutch Cancer Society, European Research Council, International Cancer Genome Consortium, Israel Science Foundation, National Cancer Institute (US), Université Laval, Natural Sciences and Engineering Research Council of Canada, Israel Cancer Research Fund, Israel Cancer Association USA, Dutch Research Council, Blessing, Charlotte, Apelt, Katja, Heuvel, Diana van den, González-Leal, Claudia, Rother, Magdalena B., Woude, Melanie van der, González-Prieto, Román, Yifrach, Adi, Parnas, Avital, Shah, Rashmi G., Kuo, Tia Tyrsett, Boer, Daphne E. C., Cai, Jin, Kragten, Angela, Kim, Hyun-Suk, Schärer, Orlando D., Vertegaal, Alfred C. O., Shah, Girish M., Adar, Sheera, Lans, Hannes, Attikum, Haico van, Ladurner, Andreas G., and Luijsterburg, Martijn S.
- Abstract
Cells employ global genome nucleotide excision repair (GGR) to eliminate a broad spectrum of DNA lesions, including those induced by UV light. The lesion-recognition factor XPC initiates repair of helix-destabilizing DNA lesions, but binds poorly to lesions such as CPDs that do not destabilize DNA. How difficult-to-repair lesions are detected in chromatin is unknown. Here, we identify the poly-(ADP-ribose) polymerases PARP1 and PARP2 as constitutive interactors of XPC. Their interaction results in the XPC-stimulated synthesis of poly-(ADP-ribose) (PAR) by PARP1 at UV lesions, which in turn enables the recruitment and activation of the PAR-regulated chromatin remodeler ALC1. PARP2, on the other hand, modulates the retention of ALC1 at DNA damage sites. Notably, ALC1 mediates chromatin expansion at UV-induced DNA lesions, leading to the timely clearing of CPD lesions. Thus, we reveal how chromatin containing difficult-to-repair DNA lesions is primed for repair, providing insight into mechanisms of chromatin plasticity during GGR.
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- 2022
41. Thermodynamic analysis of dehydration of K2CO3.1.5H(2)O
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Dutch Research Council, Netherlands Organization for Scientific Research, Mazur, Natalia, Huinink, Henk, Borm, Bart, Sansota, Stefano, Fischer, Hartmut, Adan, Olaf, Dutch Research Council, Netherlands Organization for Scientific Research, Mazur, Natalia, Huinink, Henk, Borm, Bart, Sansota, Stefano, Fischer, Hartmut, and Adan, Olaf
- Abstract
This work studied the reversible dehydration of potassium carbonate sesquihydrate (K2CO3·1.5H2O). The study is based on isobaric and isothermal thermogravimetric measurements conducted at a broad range of vapour pressures and temperatures. By controlling both parameters, we examined the influence of both constraints on the reaction kinetics at a wide extent of supersaturations. We have evaluated our experimental findings by employing two thermodynamic theories, classical nucleation theory and transition state theory. By combining both approaches, we were able to establish that: (1) At low supersaturations in a region close to equilibrium, dehydration is limited by nucleation and growth of the anhydrous phase (2) At high supersaturations, dehydration reaches maximum rate and is controlled by the reaction speed. Furthermore, we show that the dehydration of K2CO3·1.5H2O is very sensitive to pressure-temperature conditions and that it does not possess universal activation energy.
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- 2022
42. Toward energy-independence and Net-Zero: The inevitability of subsurface storage in Europe
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Dutch Research Council, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Engineering and Physical Sciences Research Council (UK), Miocic, J., Alcalde, Juan, Heinemann, Niklas, Marzán, Ignacio, Hangx, Suzanne J. T., Dutch Research Council, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Engineering and Physical Sciences Research Council (UK), Miocic, J., Alcalde, Juan, Heinemann, Niklas, Marzán, Ignacio, and Hangx, Suzanne J. T.
- Abstract
The rise in gas prices, accelerated by the war in Ukraine, has exposed the volatility of the energy market and Europe’s need to achieve independence from external supplies from politically sensitive areas. Reaching such independence, while simultaneously complying with climate agreements, will inevitably require a substantial expansion of subsurface energy and byproducts storage options.
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- 2022
43. The 2022 magneto-optics roadmap
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Dutch Research Council, Russian Science Foundation, German Research Foundation, Agencia Estatal de Investigación (España), Ministerio de Ciencia, Innovación y Universidades (España), Czech Science Foundation, Collaborative Research Centres (Germany), Ministero dell'Istruzione, dell'Università e della Ricerca, National Centres of Competence in Research (Switzerland), Swiss National Science Foundation, European Commission, Agence Nationale de la Recherche (France), Fonds National de la Recherche Luxembourg, Swedish Research Council, Ministry of Science and Higher Education of the Russian Federation, Max Planck Society, Japan Synchrotron Radiation Research Institute, University of Tokyo, Université Paris-Saclay, Air Force Office of Scientific Research (US), National Science Foundation (US), Energy Frontier Research Centers (US), University of Nebraska–Lincoln, Swedish Foundation for Strategic Research, Linköping University, National Natural Science Foundation of China, Kimel, Alexey, Zvezdin, Anatoly, Sharma, Sangeeta, Shallcross, Samuel, Sousa Nuno de, García-Martín, Antonio, Salvan, Georgeta, Hamrle, Jaroslav, Stejskal, Ondřej, McCord, Jeffrey, Tacchi, Silvia, Carlotti, Giovanni, Gambardella, Pietro, Salis, Gian, Münzenberg, Markus, Schultze, Martin, Temnov, Vasily, Bychkov, Igor V., Kotov, Leonid N., Maccaferri, Nicolò, Ignatyeva, Daria, Belotelov, Vladimir, Donnelly, Claire, Hierro-Rodríguez, Aurelio, Matsuda, Iwao, Ruchon, Thierry, Fanciulli, Mauro, Sacchi, Maurizio, Du, Chunhui Rita, Wang, Hailong, Armitage, N. Peter, Schubert, Mathias, Darakchieva, Vanya, Liu, Bilu, Huang, Ziyang, Ding, Baofu, Berger, Andreas, Vavassori, Paolo, Dutch Research Council, Russian Science Foundation, German Research Foundation, Agencia Estatal de Investigación (España), Ministerio de Ciencia, Innovación y Universidades (España), Czech Science Foundation, Collaborative Research Centres (Germany), Ministero dell'Istruzione, dell'Università e della Ricerca, National Centres of Competence in Research (Switzerland), Swiss National Science Foundation, European Commission, Agence Nationale de la Recherche (France), Fonds National de la Recherche Luxembourg, Swedish Research Council, Ministry of Science and Higher Education of the Russian Federation, Max Planck Society, Japan Synchrotron Radiation Research Institute, University of Tokyo, Université Paris-Saclay, Air Force Office of Scientific Research (US), National Science Foundation (US), Energy Frontier Research Centers (US), University of Nebraska–Lincoln, Swedish Foundation for Strategic Research, Linköping University, National Natural Science Foundation of China, Kimel, Alexey, Zvezdin, Anatoly, Sharma, Sangeeta, Shallcross, Samuel, Sousa Nuno de, García-Martín, Antonio, Salvan, Georgeta, Hamrle, Jaroslav, Stejskal, Ondřej, McCord, Jeffrey, Tacchi, Silvia, Carlotti, Giovanni, Gambardella, Pietro, Salis, Gian, Münzenberg, Markus, Schultze, Martin, Temnov, Vasily, Bychkov, Igor V., Kotov, Leonid N., Maccaferri, Nicolò, Ignatyeva, Daria, Belotelov, Vladimir, Donnelly, Claire, Hierro-Rodríguez, Aurelio, Matsuda, Iwao, Ruchon, Thierry, Fanciulli, Mauro, Sacchi, Maurizio, Du, Chunhui Rita, Wang, Hailong, Armitage, N. Peter, Schubert, Mathias, Darakchieva, Vanya, Liu, Bilu, Huang, Ziyang, Ding, Baofu, Berger, Andreas, and Vavassori, Paolo
- Abstract
Magneto-optical (MO) effects, viz. magnetically induced changes in light intensity or polarization upon reflection from or transmission through a magnetic sample, were discovered over a century and a half ago. Initially they played a crucially relevant role in unveiling the fundamentals of electromagnetism and quantum mechanics. A more broad-based relevance and wide-spread use of MO methods, however, remained quite limited until the 1960s due to a lack of suitable, reliable and easy-to-operate light sources. The advent of Laser technology and the availability of other novel light sources led to an enormous expansion of MO measurement techniques and applications that continues to this day (see section 1). The here-assembled roadmap article is intended to provide a meaningful survey over many of the most relevant recent developments, advances, and emerging research directions in a rather condensed form, so that readers can easily access a significant overview about this very dynamic research field. While light source technology and other experimental developments were crucial in the establishment of today's magneto-optics, progress also relies on an ever-increasing theoretical understanding of MO effects from a quantum mechanical perspective (see section 2), as well as using electromagnetic theory and modelling approaches (see section 3) to enable quantitatively reliable predictions for ever more complex materials, metamaterials, and device geometries. The latest advances in established MO methodologies and especially the utilization of the MO Kerr effect (MOKE) are presented in sections 4 (MOKE spectroscopy), 5 (higher order MOKE effects), 6 (MOKE microscopy), 8 (high sensitivity MOKE), 9 (generalized MO ellipsometry), and 20 (Cotton–Mouton effect in two-dimensional materials). In addition, MO effects are now being investigated and utilized in spectral ranges, to which they originally seemed completely foreign, as those of synchrotron radiation x-rays (see section 14, Despite our best attempt to represent the field of magneto-optics accurately and do justice to all its novel developments and its diversity, the research area is so extensive and active that there remains great latitude in deciding what to include in an article of this sort, which in turn means that some areas might not be adequately represented here. However, we feel that the 20 sections that form this 2022 magneto-optics roadmap article, each written by experts in the field and addressing a specific subject on only two pages, provide an accurate snapshot of where this research field stands today. Correspondingly, it should act as a valuable reference point and guideline for emerging research directions in modern magneto-optics, as well as illustrate the directions this research field might take in the foreseeable future.
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- 2022
44. Complementarity of direct detection experiments in search of light dark matter
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Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Dutch Research Council, Angevaare, J. R., Bertone, Gianfranco, Colijn, A. P., Decowski, M. P., Kavanagh, Bradley J., Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Dutch Research Council, Angevaare, J. R., Bertone, Gianfranco, Colijn, A. P., Decowski, M. P., and Kavanagh, Bradley J.
- Abstract
Dark Matter experiments searching for Weakly interacting massive particles (WIMPs) primarily use nuclear recoils (NRs) in their attempt to detect WIMPs. Migdal-induced electronic recoils (ERs) provide additional sensitivity to light Dark Matter with Script O(GeV/c2) masses. In this work, we use Bayesian inference to find the parameter space where future detectors like XENONnT and SuperCDMS SNOLAB will be able to detect WIMP Dark Matter through NRs, Migdal-induced ERs or a combination thereof. We identify regions where each detector is best at constraining the Dark Matter mass and spin independent cross-section and infer where two or more detection configurations are complementary to constraining these Dark Matter parameters through a combined analysis.
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- 2022
45. Childhood Maltreatment, Educational Attainment, and IQ: Findings From a Multicentric Case-control Study of First-episode Psychosis (EU-GEI)
- Author
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European Commission, Fundação de Amparo à Pesquisa do Estado de São Paulo, Dutch Research Council, Economic and Social Research Council (UK), Kings College London, Ministerio de Ciencia e Innovación (España), Instituto de Salud Carlos III, Comunidad de Madrid, Fundación Alicia Koplowitz, Fundación Alonso Lozano, NIHR Biomedical Research Centre (UK), Sideli, Lucia, Schimmenti, Adriano, La Barbera, Daniele, La Cascia, Caterina, Ferraro, Laura, Aas, Monica, Alameda, Luis, Velthorst, Eva, Fisher, Helen L., Caretti, Vincenzo, Trotta, Giulia, Tripoli, Giada, Quattrone, Diego, Gayer-Anderson, Charlotte, Seminerio, Fabio, Sartorio, Crocettarachele, Marrazzo, Giovanna, Lasalvia, Antonio, Tosato, Sarah, Tarricone, Ilaria, Berardi, Domenico, D'Andrea, Giuseppe, Arango, Celso, Arrojo, Manuel, Bernardo, Miguel, Bobes, Julio, Sanjuán, Julio, Santos, José Luis, Menezes, Paulo Rossi, Del-Ben, Cristina Marta, Jongsma, Hannah E., Jones, Peter B., Kirkbride, James B., Llorca, Pierre-Michel, Tortelli, Andrea, Pignon, Baptiste, de Haan, Lieuwe, Selten, Jean-Paul, Van Os, Jim, Rutten, Bart P. F., Di Forti, Marta, Morgan, Craig, Murray, Robin M., European Commission, Fundação de Amparo à Pesquisa do Estado de São Paulo, Dutch Research Council, Economic and Social Research Council (UK), Kings College London, Ministerio de Ciencia e Innovación (España), Instituto de Salud Carlos III, Comunidad de Madrid, Fundación Alicia Koplowitz, Fundación Alonso Lozano, NIHR Biomedical Research Centre (UK), Sideli, Lucia, Schimmenti, Adriano, La Barbera, Daniele, La Cascia, Caterina, Ferraro, Laura, Aas, Monica, Alameda, Luis, Velthorst, Eva, Fisher, Helen L., Caretti, Vincenzo, Trotta, Giulia, Tripoli, Giada, Quattrone, Diego, Gayer-Anderson, Charlotte, Seminerio, Fabio, Sartorio, Crocettarachele, Marrazzo, Giovanna, Lasalvia, Antonio, Tosato, Sarah, Tarricone, Ilaria, Berardi, Domenico, D'Andrea, Giuseppe, Arango, Celso, Arrojo, Manuel, Bernardo, Miguel, Bobes, Julio, Sanjuán, Julio, Santos, José Luis, Menezes, Paulo Rossi, Del-Ben, Cristina Marta, Jongsma, Hannah E., Jones, Peter B., Kirkbride, James B., Llorca, Pierre-Michel, Tortelli, Andrea, Pignon, Baptiste, de Haan, Lieuwe, Selten, Jean-Paul, Van Os, Jim, Rutten, Bart P. F., Di Forti, Marta, Morgan, Craig, and Murray, Robin M.
- Abstract
[Background and hypothesis] Evidence suggests that childhood maltreatment (ie, childhood abuse and childhood neglect) affects educational attainment and cognition. However, the association between childhood maltreatment and Intelligence Quotient (IQ) seems stronger among controls compared to people with psychosis. We hypothesised that: the association between childhood maltreatment and poor cognition would be stronger among community controls than among people with first-episode of psychosis (FEP); compared to abuse, neglect would show stronger associations with educational attainment and cognition; the association between childhood maltreatment and IQ would be partially accounted for by other risk factors; and the association between childhood maltreatment, educational attainment, and IQ would be stronger among patients with affective psychoses compared to those with nonaffective psychoses., [Study Design] 829 patients with FEP and 1283 community controls from 16 EU-GEI sites were assessed for child maltreatment, education attainment, and IQ., [Study Results] In both the FEP and control group, childhood maltreatment was associated with lower educational attainment. The association between childhood maltreatment and lower IQ was robust to adjustment for confounders only among controls. Whereas childhood neglect was consistently associated with lower attainment and IQ in both groups, childhood abuse was associated with IQ only in controls. Among both patients with affective and nonaffective psychoses, negative associations between childhood maltreatment and educational attainment were observed, but the crude association with IQ was only evident in affective psychoses., [Conclusions] Our findings underscore the role of childhood maltreatment in shaping academic outcomes and cognition of people with FEP as well as controls.
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- 2022
46. Optimization of the multi-mem response of topotactic redox La1/2Sr1/2Mn1/2Co1/2O3- x
- Author
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Universidad Nacional de Cuyo, Agencia Nacional de Promoción Científica y Tecnológica (Argentina), European Commission, Dutch Research Council, Ministry of Science and Higher Education of the Russian Federation, University of Groningen, Ubbo Emmius Foundation, Román Acevedo, W., Aguirre, Myriam H., Ferreyra, C., Sánchez, M. J., Rengifo, Miguel, Bosch, C. A. M. van den, Aguadero, A., Noheda, Beatriz, Rubi, Diego, Universidad Nacional de Cuyo, Agencia Nacional de Promoción Científica y Tecnológica (Argentina), European Commission, Dutch Research Council, Ministry of Science and Higher Education of the Russian Federation, University of Groningen, Ubbo Emmius Foundation, Román Acevedo, W., Aguirre, Myriam H., Ferreyra, C., Sánchez, M. J., Rengifo, Miguel, Bosch, C. A. M. van den, Aguadero, A., Noheda, Beatriz, and Rubi, Diego
- Abstract
Memristive systems emerge as strong candidates for the implementation of resistive random access memories and neuromorphic computing devices, as they can mimic the electrical analog behavior or biological synapses. In addition, complementary functionalities, such as memcapacitance, could significantly improve the performance of bio-inspired devices in key issues, such as energy consumption. However, the physics of mem systems is not fully understood so far, hampering their large-scale implementation in devices. Perovskites that undergo topotactic transitions and redox reactions show improved performance as mem systems, compared to standard perovskites. In this paper, we analyze different strategies to optimize the multi-mem behavior (memristive and memcapacitive) of topotactic redox La1/2Sr1/2Mn1/2Co1/2O3−x (LSMCO) films grown on Nb:SrTiO3. We explored devices with different crystallinities (from amorphous to epitaxial LSMCO), out-of-plane orientation [(001) and (110)], and stimulated either with voltage or current pulses. We found that an optimum memory response is found for epitaxial (110) LSMCO stimulated with current pulses. Under these conditions, the system efficiently exchanges oxygen with the environment minimizing, at the same time, self-heating effects that trigger nanostructural and chemical changes that could affect the device integrity and performance. Our work contributes to pave the way for the integration of multi-mem topotactic redox oxide-based interfaces in multiple device architectures, in order to exploit their memristive and memcapacitive properties for data storage or neuromorphic computation.
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- 2022
47. Cortical thickness across the lifespan: Data from 17,075 healthy individuals aged 3-90 years
- Author
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European Commission, National Institute of Child Health and Human Development (US), QIMR Berghofer Medical Research Institute (Australia), University of Queensland, National Cancer Institute (US), Dutch Research Council, Netherlands Organisation for Health Research and Development, National Institute of Mental Health (US), European Research Council, National Center for Advancing Translational Sciences (US), Medical Research Council (UK), Fundación Marques de Valdecilla, Instituto de Salud Carlos III, Swedish Research Council, South-Eastern Norway Regional Health Authority, Research Council of Norway, Icahn School of Medicine at Mount Sinai, South London and Maudsley NHS Foundation Trust, NHS Foundation Trust, National Institute for Health Research (UK), Frangou, Sophia, Modabbernia, Amirhossein, Williams, Steven C. R., Papachristou, Efstathios, Doucet, Gaelle E., Agartz, Ingrid, Aghajani, Moji, Akudjedu, Theophilus N., Albajes-Eizagirre, Antón, Alnæs, Dag, Alpert, Kathryn I., Voineskos, Aristotle, Völzke, Henry, Walter, Henrik, Walton, Esther, Wang, Lei, Wang, Yang, Wassink, Thomas H., Weber, Bernd, Bertolino, Alessandro, Wen, Wei, Kalnin, Andrew, West, John D., Westlye, Lars T., Whalley, Heather, Wierenga, Lara M., Wittfeld, Katharina, Wolf, Daniel H., Worker, Amanda, Wright, Margaret J., Yang, Kun, Bonvino, Aurora, Kanai, Ryota, Yoncheva, Yulyia, Zanetti, Marcus V., Ziegler, Georg C., Karolinska Schizophrenia Project, Thompson, Paul M., Dima, Danai, Boomsma, Dorret I., Borgwardt, Stefan, Bourque, Josiane, Brandeis, Daniel, Klein, Marieke, Breier, Alan, Brodaty, Henry, Brouwer, Rachel M., Buitelaar, Jan K., Busatto, Geraldo F., Buckner, Randy L., Calhoun, Vincent, Canales-Rodríguez, Erick J., Cannon, Dara M., Caseras, Xavier, Klyushnik, Tatyana P., Castellanos, Francisco X., Cervenka, Simon, Chaim-Avancini, Tiffany M., Ching, Christopher R. K., Chubar, Victoria, Clark, Vincent P., Conrod, Patricia, Conzelmann, Annette, Crespo-Facorro, Benedicto, Crivello, Fabrice, Koenders, Laura, Crone, Eveline A., Dale, Anders M., Dannlowski, Udo, Davey, Christopher, Geus, Eco J. C. de, Haan, Lieuwe de, Zubicaray, Greig I. de, den Braber, Anouk, Dickie, Erin W., Di Giorgio, Annabella, Koops, Sanne, Doan, Nhat Trung, Dørum, Erlend S., Ehrlich, Stefan, Erk, Susanne, Espeseth, Thomas, Fatouros-Bergman, Helena, Fisher, Simon E., Fouche, Jean-Paul, Franke, Barbara, Frodl, Thomas, Krämer, Bernd, Fuentes-Claramonte, Paola, Glahn, David C., Gotlib, Ian H., Grabe, Hans-Jörgen, Grimm, Oliver, Groenewold, Nynke A., Grotegerd, Dominik, Gruber, Oliver, Gruner, Patricia, Gur, Rachel E., Kuntsi, Jonna, Gur, Ruben C., Hahn, Tim, Harrison, Ben J., Hartman, Catharine A., Hatton, Sean N., Heinz, Andreas, Heslenfeld, Dirk J., Hibar, Derrek P., Hickie, Ian B., Ho, Beng-Choon, Lagopoulos, Jim, Hoekstra, Pieter J., Hohmann, Sarah, Holmes, Avram J., Hoogman, Martine, Hosten, Norbert, Howells, Fleur M., Hulshoff Pol, Hilleke E., Huyser, Chaim, Jahanshad, Neda, James, Anthony, Lázaro, Luisa, Jernigan, Terry L., Jiang, Jiyang, Jönsson, Erik G., Joska, John A., Kahn, René S., Andersson, Micael, Lebedeva, Irina, Lee, Won Hee, Lesch, Klaus-Peter, Lochner, Christine, Machielsen, Marise W. J., Maingault, Sophie, Martin, Nicholas G., Martínez-Zalacaín, Ignacio, Mataix-Cols, David, Mazoyer, Bernard, Andreasen, Nancy C., McDonald, Colm, McDonald, Brenna C., McIntosh, Andrew M., McMahon, Katie L., McPhilemy, Genevieve, Meinert, Susanne, Menchón, José M., Medland, Sarah E., Meyer-Lindenberg, Andreas, Naaijen, Jilly, Andreassen, Ole A., Najt, Pablo, Nakao, Tomohiro, Nordvik, Jan E., Nyberg, Lars, Oosterlaan, Jaap, Ortiz-Garcia de la Foz, Victor, Paloyelis, Yannis, Pauli, Paul, Pergola, Giulio, Pomarol-Clotet, Edith, Asherson, Philip, Portella, Maria J., Potkin, Steven G., Radua, Joaquim, Reif, Andreas, Rinker, Daniel A., Roffman, Joshua L., Rosa, Pedro G. P., Sacchet, Matthew D., Sachdev, Perminder S., Salvador, Raymond, Banaschewski, Tobias, Sánchez-Juan, Pascual, Sarró, Salvador, Satterthwaite, Theodore D., Saykin, Andrew J., Serpa, Mauricio H., Schmaal, Lianne, Schnell, Knut, Schumann, Gunter, Sim, Kang, Smoller, Jordan W., Bargalló, Núria, Sommer, Iris, Soriano-Mas, Carles, Stein, Dan J., Strike, Lachlan T., Swagerman, Suzanne C., Tamnes, Christian K., Temmingh, Henk S., Thomopoulos, Sophia I., Tomyshev, Alexander S., Baumeister, Sarah, Tordesillas-Gutiérrez, Diana, Trollor, Julian N., Turner, Jessica A., Uhlmann, Anne, van den Heuvel, Odile A., van den Meer, Dennis, van der Wee, Nic J. A., van Haren, Neeltje E. M., van 't Ent, Dennis, van Erp, Theo G. M., Baur-Streubel, Ramona, Veer, Ilya M., Veltman, Dick J., European Commission, National Institute of Child Health and Human Development (US), QIMR Berghofer Medical Research Institute (Australia), University of Queensland, National Cancer Institute (US), Dutch Research Council, Netherlands Organisation for Health Research and Development, National Institute of Mental Health (US), European Research Council, National Center for Advancing Translational Sciences (US), Medical Research Council (UK), Fundación Marques de Valdecilla, Instituto de Salud Carlos III, Swedish Research Council, South-Eastern Norway Regional Health Authority, Research Council of Norway, Icahn School of Medicine at Mount Sinai, South London and Maudsley NHS Foundation Trust, NHS Foundation Trust, National Institute for Health Research (UK), Frangou, Sophia, Modabbernia, Amirhossein, Williams, Steven C. R., Papachristou, Efstathios, Doucet, Gaelle E., Agartz, Ingrid, Aghajani, Moji, Akudjedu, Theophilus N., Albajes-Eizagirre, Antón, Alnæs, Dag, Alpert, Kathryn I., Voineskos, Aristotle, Völzke, Henry, Walter, Henrik, Walton, Esther, Wang, Lei, Wang, Yang, Wassink, Thomas H., Weber, Bernd, Bertolino, Alessandro, Wen, Wei, Kalnin, Andrew, West, John D., Westlye, Lars T., Whalley, Heather, Wierenga, Lara M., Wittfeld, Katharina, Wolf, Daniel H., Worker, Amanda, Wright, Margaret J., Yang, Kun, Bonvino, Aurora, Kanai, Ryota, Yoncheva, Yulyia, Zanetti, Marcus V., Ziegler, Georg C., Karolinska Schizophrenia Project, Thompson, Paul M., Dima, Danai, Boomsma, Dorret I., Borgwardt, Stefan, Bourque, Josiane, Brandeis, Daniel, Klein, Marieke, Breier, Alan, Brodaty, Henry, Brouwer, Rachel M., Buitelaar, Jan K., Busatto, Geraldo F., Buckner, Randy L., Calhoun, Vincent, Canales-Rodríguez, Erick J., Cannon, Dara M., Caseras, Xavier, Klyushnik, Tatyana P., Castellanos, Francisco X., Cervenka, Simon, Chaim-Avancini, Tiffany M., Ching, Christopher R. K., Chubar, Victoria, Clark, Vincent P., Conrod, Patricia, Conzelmann, Annette, Crespo-Facorro, Benedicto, Crivello, Fabrice, Koenders, Laura, Crone, Eveline A., Dale, Anders M., Dannlowski, Udo, Davey, Christopher, Geus, Eco J. C. de, Haan, Lieuwe de, Zubicaray, Greig I. de, den Braber, Anouk, Dickie, Erin W., Di Giorgio, Annabella, Koops, Sanne, Doan, Nhat Trung, Dørum, Erlend S., Ehrlich, Stefan, Erk, Susanne, Espeseth, Thomas, Fatouros-Bergman, Helena, Fisher, Simon E., Fouche, Jean-Paul, Franke, Barbara, Frodl, Thomas, Krämer, Bernd, Fuentes-Claramonte, Paola, Glahn, David C., Gotlib, Ian H., Grabe, Hans-Jörgen, Grimm, Oliver, Groenewold, Nynke A., Grotegerd, Dominik, Gruber, Oliver, Gruner, Patricia, Gur, Rachel E., Kuntsi, Jonna, Gur, Ruben C., Hahn, Tim, Harrison, Ben J., Hartman, Catharine A., Hatton, Sean N., Heinz, Andreas, Heslenfeld, Dirk J., Hibar, Derrek P., Hickie, Ian B., Ho, Beng-Choon, Lagopoulos, Jim, Hoekstra, Pieter J., Hohmann, Sarah, Holmes, Avram J., Hoogman, Martine, Hosten, Norbert, Howells, Fleur M., Hulshoff Pol, Hilleke E., Huyser, Chaim, Jahanshad, Neda, James, Anthony, Lázaro, Luisa, Jernigan, Terry L., Jiang, Jiyang, Jönsson, Erik G., Joska, John A., Kahn, René S., Andersson, Micael, Lebedeva, Irina, Lee, Won Hee, Lesch, Klaus-Peter, Lochner, Christine, Machielsen, Marise W. J., Maingault, Sophie, Martin, Nicholas G., Martínez-Zalacaín, Ignacio, Mataix-Cols, David, Mazoyer, Bernard, Andreasen, Nancy C., McDonald, Colm, McDonald, Brenna C., McIntosh, Andrew M., McMahon, Katie L., McPhilemy, Genevieve, Meinert, Susanne, Menchón, José M., Medland, Sarah E., Meyer-Lindenberg, Andreas, Naaijen, Jilly, Andreassen, Ole A., Najt, Pablo, Nakao, Tomohiro, Nordvik, Jan E., Nyberg, Lars, Oosterlaan, Jaap, Ortiz-Garcia de la Foz, Victor, Paloyelis, Yannis, Pauli, Paul, Pergola, Giulio, Pomarol-Clotet, Edith, Asherson, Philip, Portella, Maria J., Potkin, Steven G., Radua, Joaquim, Reif, Andreas, Rinker, Daniel A., Roffman, Joshua L., Rosa, Pedro G. P., Sacchet, Matthew D., Sachdev, Perminder S., Salvador, Raymond, Banaschewski, Tobias, Sánchez-Juan, Pascual, Sarró, Salvador, Satterthwaite, Theodore D., Saykin, Andrew J., Serpa, Mauricio H., Schmaal, Lianne, Schnell, Knut, Schumann, Gunter, Sim, Kang, Smoller, Jordan W., Bargalló, Núria, Sommer, Iris, Soriano-Mas, Carles, Stein, Dan J., Strike, Lachlan T., Swagerman, Suzanne C., Tamnes, Christian K., Temmingh, Henk S., Thomopoulos, Sophia I., Tomyshev, Alexander S., Baumeister, Sarah, Tordesillas-Gutiérrez, Diana, Trollor, Julian N., Turner, Jessica A., Uhlmann, Anne, van den Heuvel, Odile A., van den Meer, Dennis, van der Wee, Nic J. A., van Haren, Neeltje E. M., van 't Ent, Dennis, van Erp, Theo G. M., Baur-Streubel, Ramona, Veer, Ilya M., and Veltman, Dick J.
- Abstract
Delineating the association of age and cortical thickness in healthy individuals is critical given the association of cortical thickness with cognition and behavior. Previous research has shown that robust estimates of the association between age and brain morphometry require large-scale studies. In response, we used cross-sectional data from 17,075 individuals aged 3–90 years from the Enhancing Neuroimaging Genetics through Meta-Analysis (ENIGMA) Consortium to infer age-related changes in cortical thickness. We used fractional polynomial (FP) regression to quantify the association between age and cortical thickness, and we computed normalized growth centiles using the parametric Lambda, Mu, and Sigma method. Interindividual variability was estimated using meta-analysis and one-way analysis of variance. For most regions, their highest cortical thickness value was observed in childhood. Age and cortical thickness showed a negative association; the slope was steeper up to the third decade of life and more gradual thereafter; notable exceptions to this general pattern were entorhinal, temporopolar, and anterior cingulate cortices. Interindividual variability was largest in temporal and frontal regions across the lifespan. Age and its FP combinations explained up to 59% variance in cortical thickness. These results may form the basis of further investigation on normative deviation in cortical thickness and its significance for behavioral and cognitive outcomes.
- Published
- 2022
48. Subcortical volumes across the lifespan: Data from 18,605 healthy individuals aged 3–90 years
- Author
-
National Institute of Mental Health (US), Karolinska Institute, Stockholm County Council, South-Eastern Norway Regional Health Authority, German Centre for Cardiovascular Research, Siemens Healthcare, University of Queensland, Eunice Kennedy Shriver National Institute of Child Health and Human Development (US), National Health and Medical Research Council (Australia), National Institute on Drug Abuse (US), Indiana State Department of Health, Parents of children with epilepsy, Epilepsy Therapy Project, Fight Against Childhood Epilepsy and Seizures, Epilepsy Foundation, American Epilepsy Society, Knut and Alice Wallenberg Foundation, European Commission, Dutch Research Council, Netherlands Organization for Scientific Research, Netherlands Brain Foundation, Utrecht University, European Research Council, National Center for Advancing Translational Sciences (US), National Institutes of Health (US), National Center for Research Resources (US), Fundación Marques de Valdecilla, Instituto de Salud Carlos III, Swedish Research Council, Kings College London, South London and Maudsley NHS Foundation Trust, NIHR Biomedical Research Centre (UK), National Institute for Health Research (UK), Dima, Danai, Modabbernia, Amirhossein, Papachristou, Efstathios, Doucet, Gaelle E., Agartz, Ingrid, Aghajani, Moji, Akudjedu, Theophilus N., Albajes-Eizagirre, Antón, Alnæs, Dag, Alpert, Kathryn I., Andersson, Micael, Radua, Joaquim, Reif, Andreas, Rinker, Daniel A., Roffman, Joshua L., Rosa, Pedro G. P., Sacchet, Matthew D., Sachdev, Perminder S., Salvador, Raymond, Sánchez-Juan, Pascual, Tordesillas-Gutiérrez, Diana, Ehrlich, Stefan, Bargalló, Núria, Weber, Bernd, Sarró, Salvador, Satterthwaite, Theodore D., Saykin, Andrew J., Serpa, Mauricio H., Schmaal, Lianne, Schnell, Knut, Schumann, Gunter, Sim, Kang, Erk, Susanne, West, John D., Smoller, Jordan W., Sommer, Iris, Wen, Wei, Baumeister, Sarah, Hartman, Catharine A., Trollor, Julian N., Baur-Streubel, Ramona, Turner, Jessica A., Uhlmann, Anne, Espeseth, Thomas, van den Heuvel, Odile A., van den Meer, Dennis, van der Wee, Nic J. A., van Haren, Neeltje E. M., van't Ent, Dennis, van Erp, Theo G. M., Hatton, Sean N., Bonvino, Aurora, Veer, Ilya M., Veltman, Dick J., Fatouros-Bergman, Helena, Bertolino, Alessandro, Voineskos, Aristotle, Kanai, Ryota, Westlye, Lars T., Whalley, Heather, Wierenga, Lara M., Williams, Steven C. R., Heinz, Andreas, Wittfeld, Katharina, Wolf, Daniel H., Fisher, Simon E., Worker, Amanda, Wright, Margaret J., Yang, Kun, Yoncheva, Yulyia, Klein, Marieke, Boomsma, Dorret I., Zanetti, Marcus V., Ziegler, Georg C., Heslenfeld, Dirk J., Thompson, Paul M., Fouche, Jean-Paul, Frangou, Sophia, Borgwardt, Stefan, Bourque, Josiane, Brandeis, Daniel, Breier, Alan, Brodaty, Henry, Klyushnik, Tatyana P., Brouwer, Rachel M., Buitelaar, Jan K., Hibar, Derrek P., Franke, Barbara, Busatto, Geraldo F., Buckner, Randy L., Calhoun, Vincent, Canales-Rodríguez, Erick J., Cannon, Dara M., Caseras, Xavier, Castellanos, Francisco X., Cervenka, Simon, Koenders, Laura, Chaim-Avancini, Tiffany M., Frodl, Thomas, Hickie, Ian B., Ching, Christopher R. K., Chubar, Victoria, Clark, Vincent P., Conrod, Patricia, Conzelmann, Annette, Crespo-Facorro, Benedicto, Crivello, Fabrice, Crone, Eveline A., Dannlowski, Udo, Fuentes-Claramonte, Paola, Koops, Sanne, Ho, Beng-Choon, Dale, Anders M., Davey, Christopher, Geus, Eco J. C. de, de Haan, Lieuwe, Zubicaray, Greig I. de, den Braber, Anouk, Dickie, Erin W., Di Giorgio, Annabella, Hohmann, Sarah, Doan, Nhat Trung, Dørum, Erlend S., Hoekstra, Pieter J., Krämer, Bernd, Soriano-Mas, Carles, Glahn, David C., Kuntsi, Jonna, Gotlib, Ian H., Grabe, Hans-Jörgen, Grimm, Oliver, Groenewold, Nynke A., Grotegerd, Dominik, Gruber, Oliver, Gruner, Patricia, Gur, Rachel E., Stein, Dan J., Lázaro, Luisa, Gur, Ruben C., Hahn, Tim, Lagopoulos, Jim, Harrison, Ben J., Völzke, Henry, Holmes, Avram J., Hoogman, Martine, Hosten, Norbert, Howells, Fleur M., Strike, Lachlan T., Hulshoff Pol, Hilleke E., Huyser, Chaim, Jahanshad, Neda, James, Anthony, Jernigan, Terry L., Jiang, Jiyang, Walter, Henrik, Lebedeva, Irina, Jönsson, Erik G., Joska, John A., Swagerman, Suzanne C., Kahn, René S., Kalnin, Andrew, Andreasen, Nancy C., Lee, Won Hee, Lesch, Klaus-Peter, Lochner, Christine, Machielsen, Marise W. J., Walton, Esther, Maingault, Sophie, Martin, Nicholas G., Tamnes, Christian K., Martínez-Zalacaín, Ignacio, Mataix-Cols, David, Mazoyer, Bernard, McDonald, Colm, Andreassen, Ole A., McDonald, Brenna C., McIntosh, Andrew M., McMahon, Katie L., Wang, Lei, McPhilemy, Genevieve, Temmingh, Henk S., Meinert, Susanne, Menchón, José M., Medland, Sarah E., Meyer-Lindenberg, Andreas, Naaijen, Jilly, Najt, Pablo, Asherson, Philip, Nakao, Tomohiro, Nordvik, Jan E., Wang, Yang, Thomopoulos, Sophia I., Nyberg, Lars, Oosterlaan, Jaap, Ortiz-Garcia de la Foz, Victor, Paloyelis, Yannis, Pauli, Paul, Pergola, Giulio, Pomarol-Clotet, Edith, Portella, Maria J., Banaschewski, Tobias, Potkin, Steven G., Tomyshev, Alexander S., Wassink, Thomas H., National Institute of Mental Health (US), Karolinska Institute, Stockholm County Council, South-Eastern Norway Regional Health Authority, German Centre for Cardiovascular Research, Siemens Healthcare, University of Queensland, Eunice Kennedy Shriver National Institute of Child Health and Human Development (US), National Health and Medical Research Council (Australia), National Institute on Drug Abuse (US), Indiana State Department of Health, Parents of children with epilepsy, Epilepsy Therapy Project, Fight Against Childhood Epilepsy and Seizures, Epilepsy Foundation, American Epilepsy Society, Knut and Alice Wallenberg Foundation, European Commission, Dutch Research Council, Netherlands Organization for Scientific Research, Netherlands Brain Foundation, Utrecht University, European Research Council, National Center for Advancing Translational Sciences (US), National Institutes of Health (US), National Center for Research Resources (US), Fundación Marques de Valdecilla, Instituto de Salud Carlos III, Swedish Research Council, Kings College London, South London and Maudsley NHS Foundation Trust, NIHR Biomedical Research Centre (UK), National Institute for Health Research (UK), Dima, Danai, Modabbernia, Amirhossein, Papachristou, Efstathios, Doucet, Gaelle E., Agartz, Ingrid, Aghajani, Moji, Akudjedu, Theophilus N., Albajes-Eizagirre, Antón, Alnæs, Dag, Alpert, Kathryn I., Andersson, Micael, Radua, Joaquim, Reif, Andreas, Rinker, Daniel A., Roffman, Joshua L., Rosa, Pedro G. P., Sacchet, Matthew D., Sachdev, Perminder S., Salvador, Raymond, Sánchez-Juan, Pascual, Tordesillas-Gutiérrez, Diana, Ehrlich, Stefan, Bargalló, Núria, Weber, Bernd, Sarró, Salvador, Satterthwaite, Theodore D., Saykin, Andrew J., Serpa, Mauricio H., Schmaal, Lianne, Schnell, Knut, Schumann, Gunter, Sim, Kang, Erk, Susanne, West, John D., Smoller, Jordan W., Sommer, Iris, Wen, Wei, Baumeister, Sarah, Hartman, Catharine A., Trollor, Julian N., Baur-Streubel, Ramona, Turner, Jessica A., Uhlmann, Anne, Espeseth, Thomas, van den Heuvel, Odile A., van den Meer, Dennis, van der Wee, Nic J. A., van Haren, Neeltje E. M., van't Ent, Dennis, van Erp, Theo G. M., Hatton, Sean N., Bonvino, Aurora, Veer, Ilya M., Veltman, Dick J., Fatouros-Bergman, Helena, Bertolino, Alessandro, Voineskos, Aristotle, Kanai, Ryota, Westlye, Lars T., Whalley, Heather, Wierenga, Lara M., Williams, Steven C. R., Heinz, Andreas, Wittfeld, Katharina, Wolf, Daniel H., Fisher, Simon E., Worker, Amanda, Wright, Margaret J., Yang, Kun, Yoncheva, Yulyia, Klein, Marieke, Boomsma, Dorret I., Zanetti, Marcus V., Ziegler, Georg C., Heslenfeld, Dirk J., Thompson, Paul M., Fouche, Jean-Paul, Frangou, Sophia, Borgwardt, Stefan, Bourque, Josiane, Brandeis, Daniel, Breier, Alan, Brodaty, Henry, Klyushnik, Tatyana P., Brouwer, Rachel M., Buitelaar, Jan K., Hibar, Derrek P., Franke, Barbara, Busatto, Geraldo F., Buckner, Randy L., Calhoun, Vincent, Canales-Rodríguez, Erick J., Cannon, Dara M., Caseras, Xavier, Castellanos, Francisco X., Cervenka, Simon, Koenders, Laura, Chaim-Avancini, Tiffany M., Frodl, Thomas, Hickie, Ian B., Ching, Christopher R. K., Chubar, Victoria, Clark, Vincent P., Conrod, Patricia, Conzelmann, Annette, Crespo-Facorro, Benedicto, Crivello, Fabrice, Crone, Eveline A., Dannlowski, Udo, Fuentes-Claramonte, Paola, Koops, Sanne, Ho, Beng-Choon, Dale, Anders M., Davey, Christopher, Geus, Eco J. C. de, de Haan, Lieuwe, Zubicaray, Greig I. de, den Braber, Anouk, Dickie, Erin W., Di Giorgio, Annabella, Hohmann, Sarah, Doan, Nhat Trung, Dørum, Erlend S., Hoekstra, Pieter J., Krämer, Bernd, Soriano-Mas, Carles, Glahn, David C., Kuntsi, Jonna, Gotlib, Ian H., Grabe, Hans-Jörgen, Grimm, Oliver, Groenewold, Nynke A., Grotegerd, Dominik, Gruber, Oliver, Gruner, Patricia, Gur, Rachel E., Stein, Dan J., Lázaro, Luisa, Gur, Ruben C., Hahn, Tim, Lagopoulos, Jim, Harrison, Ben J., Völzke, Henry, Holmes, Avram J., Hoogman, Martine, Hosten, Norbert, Howells, Fleur M., Strike, Lachlan T., Hulshoff Pol, Hilleke E., Huyser, Chaim, Jahanshad, Neda, James, Anthony, Jernigan, Terry L., Jiang, Jiyang, Walter, Henrik, Lebedeva, Irina, Jönsson, Erik G., Joska, John A., Swagerman, Suzanne C., Kahn, René S., Kalnin, Andrew, Andreasen, Nancy C., Lee, Won Hee, Lesch, Klaus-Peter, Lochner, Christine, Machielsen, Marise W. J., Walton, Esther, Maingault, Sophie, Martin, Nicholas G., Tamnes, Christian K., Martínez-Zalacaín, Ignacio, Mataix-Cols, David, Mazoyer, Bernard, McDonald, Colm, Andreassen, Ole A., McDonald, Brenna C., McIntosh, Andrew M., McMahon, Katie L., Wang, Lei, McPhilemy, Genevieve, Temmingh, Henk S., Meinert, Susanne, Menchón, José M., Medland, Sarah E., Meyer-Lindenberg, Andreas, Naaijen, Jilly, Najt, Pablo, Asherson, Philip, Nakao, Tomohiro, Nordvik, Jan E., Wang, Yang, Thomopoulos, Sophia I., Nyberg, Lars, Oosterlaan, Jaap, Ortiz-Garcia de la Foz, Victor, Paloyelis, Yannis, Pauli, Paul, Pergola, Giulio, Pomarol-Clotet, Edith, Portella, Maria J., Banaschewski, Tobias, Potkin, Steven G., Tomyshev, Alexander S., and Wassink, Thomas H.
- Abstract
Age has a major effect on brain volume. However, the normative studies available are constrained by small sample sizes, restricted age coverage and significant methodological variability. These limitations introduce inconsistencies and may obscure or distort the lifespan trajectories of brain morphometry. In response, we capitalized on the resources of the Enhancing Neuroimaging Genetics through Meta-Analysis (ENIGMA) Consortium to examine age-related trajectories inferred from cross-sectional measures of the ventricles, the basal ganglia (caudate, putamen, pallidum, and nucleus accumbens), the thalamus, hippocampus and amygdala using magnetic resonance imaging data obtained from 18,605 individuals aged 3–90 years. All subcortical structure volumes were at their maximum value early in life. The volume of the basal ganglia showed a monotonic negative association with age thereafter; there was no significant association between age and the volumes of the thalamus, amygdala and the hippocampus (with some degree of decline in thalamus) until the sixth decade of life after which they also showed a steep negative association with age. The lateral ventricles showed continuous enlargement throughout the lifespan. Age was positively associated with inter-individual variability in the hippocampus and amygdala and the lateral ventricles. These results were robust to potential confounders and could be used to examine the functional significance of deviations from typical age-related morphometric patterns.
- Published
- 2022
49. Relationships between species richness and ecosystem services inAmazonian forests strongly infuenced by biogeographical strata and forest types
- Author
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Dutch Research Council, Agence Nationale de la Recherche (France), Steur, Gijs, Steege, Hans ter, Verburg, René W., Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., Castellanos, Hernan, Stropp, Juliana, Fonty, Émile, Ruysschaert, Sofie, Galbraith, David, Kalamandeen, Michelle, Andel, Tinde R. van, Brienen, Roel, Phillips, Olivier L., Feeley, Kenneth, Terborgh, John, Verweij, Pita A., Dutch Research Council, Agence Nationale de la Recherche (France), Steur, Gijs, Steege, Hans ter, Verburg, René W., Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., Castellanos, Hernan, Stropp, Juliana, Fonty, Émile, Ruysschaert, Sofie, Galbraith, David, Kalamandeen, Michelle, Andel, Tinde R. van, Brienen, Roel, Phillips, Olivier L., Feeley, Kenneth, Terborgh, John, and Verweij, Pita A.
- Abstract
Despite increasing attention for relationships between species richness and ecosystem services, for tropical forests such relationships are still under discussion. Contradicting relationships have been reported concerning carbon stock, while little is known about relationships concerning timber stock and the abundance of non-timber forest product producing plant species (NTFP abundance). Using 151 1-ha plots, we related tree and arborescent palm species richness to carbon stock, timber stock and NTFP abundance across the Guiana Shield, and using 283 1-ha plots, to carbon stock across all of Amazonia. We analysed how environmental heterogeneity influenced these relationships, assessing differences across and within multiple forest types, biogeographic regions and subregions. Species richness showed significant relationships with all three ecosystem services, but relationships differed between forest types and among biogeographical strata. We found that species richness was positively associated to carbon stock in all biogeographical strata. This association became obscured by variation across biogeographical regions at the scale of Amazonia, resembling a Simpson’s paradox. By contrast, species richness was weakly or not significantly related to timber stock and NTFP abundance, suggesting that species richness is not a good predictor for these ecosystem services. Our findings illustrate the importance of environmental stratification in analysing biodiversity-ecosystem services relationships.
- Published
- 2022
50. Expanding the Medfly Virome: Viral Diversity, Prevalence, and sRNA Profiling in Mass-Reared and Field-Derived Medflies
- Author
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European Commission, Dutch Research Council, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Hernández-Pelegrín, Luis, Llopis-Giménez, Ángel, Crava, María Cristina, Ortego, Félix, Hernández-Crespo, Pedro, Ros, Vera I. D., Herrero, Salvador, European Commission, Dutch Research Council, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Hernández-Pelegrín, Luis, Llopis-Giménez, Ángel, Crava, María Cristina, Ortego, Félix, Hernández-Crespo, Pedro, Ros, Vera I. D., and Herrero, Salvador
- Abstract
The Mediterranean fruit fly (medfly), Ceratitis capitata, is an agricultural pest of a wide range of fruits. The advent of high-throughput sequencing has boosted the discovery of RNA viruses infecting insects. In this article, we aim to characterize the RNA virome and viral sRNA profile of medfly. By means of transcriptome mining, we expanded the medfly RNA virome to 13 viruses, including two novel positive ssRNA viruses and the first two novel dsRNA viruses reported for medfly. Our analysis across multiple laboratory-reared and field-collected medfly samples showed the presence of a core RNA virome comprised of Ceratitis capitata iflavirus 2 and Ceratitis capitata negev-like virus 1. Furthermore, field-collected flies showed a higher viral diversity in comparison to the laboratory-reared flies. Based on the small RNA sequencing, we detected small interfering RNAs mapping to all the viruses present in each sample, except for Ceratitis capitata nora virus. Although the identified RNA viruses do not cause obvious symptoms in medflies, the outcome of their interaction may still influence the medfly’s fitness and ecology, becoming either a risk or an opportunity for mass-rearing and SIT applications.
- Published
- 2022
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