24 results on '"Dymerska B"'
Search Results
2. Differential functional benefits of ultra highfield MR systems within the language network
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Geißler, A., primary, Matt, E., additional, Fischmeister, F., additional, Wurnig, M., additional, Dymerska, B., additional, Knosp, E., additional, Feucht, M., additional, Trattnig, S., additional, Auff, E., additional, Fitch, W.T., additional, Robinson, S., additional, and Beisteiner, R., additional
- Published
- 2014
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3. Monomer consumption in MAGIC-type polymer gels in the Bragg-peak of proton beams observed by volume selective1H MR-spectroscopy (MRS): proof of principle for high resolution MRS-methodology with a sensitive rf-detector
- Author
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Schmid, A I, primary, Laistler, E, additional, Sieg, J, additional, Dymerska, B, additional, Wieland, M, additional, Naumann, J, additional, Jaekel, O, additional, and Berg, A, additional
- Published
- 2013
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4. Exchange bias effect in partially oxidized amorphous Fe–Ni–B based metallic glass nanostructures
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Thomas, S, primary, Pookat, G, additional, Nair, S S, additional, Daniel, M, additional, Dymerska, B, additional, Liebig, A, additional, Al-Harthi, S H, additional, Ramanujan, R V, additional, Anantharaman, M R, additional, Fidler, J, additional, and Albrecht, M, additional
- Published
- 2012
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5. Monomer consumption in MAGIC-type polymer gels in the Bragg-peak of proton beams observed by volume selective 1H MR-spectroscopy (MRS): proof of principle for high resolution MRS-methodology with a sensitive rf-detector.
- Author
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Schmid, A I, Laistler, E, Sieg, J, Dymerska, B, Wieland, M, Naumann, J, Jaekel, O, and Berg, A
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- 2013
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6. Correcting dynamic distortions in 7T echo planar imaging using a jittered echo time sequence
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Dymerska B, Benedikt A Poser, Bogner W, Visser E, Eckstein K, Cardoso P, Barth M, Trattnig S, and Sd, Robinson
7. Mitigating susceptibility-induced distortions in high-resolution 3DEPI fMRI at 7T.
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Malekian V, Graedel NN, Hickling A, Aghaeifar A, Dymerska B, Corbin N, Josephs O, Maguire EA, and Callaghan MF
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- Humans, Image Processing, Computer-Assisted methods, Brain diagnostic imaging, Brain Mapping methods, Artifacts, Magnetic Resonance Imaging methods, Echo-Planar Imaging methods
- Abstract
Geometric distortion is a major limiting factor for spatial specificity in high-resolution fMRI using EPI readouts and is exacerbated at higher field strengths due to increased B
0 field inhomogeneity. Prominent correction schemes are based on B0 field-mapping or acquiring reverse phase-encoded (reversed-PE) data. However, to date, comparisons of these techniques in the context of fMRI have only been performed on 2DEPI data, either at lower field or lower resolution. In this study, we investigate distortion compensation in the context of sub-millimetre 3DEPI data at 7T. B0 field-mapping and reversed-PE distortion correction techniques were applied to both partial coverage BOLD-weighted and whole brain MT-weighted 3DEPI data with matched distortion. Qualitative assessment showed overall improvement in cortical alignment for both correction techniques in both 3DEPI fMRI and whole-brain MT-3DEPI datasets. The distortion-corrected MT-3DEPI images were quantitatively evaluated by comparing cortical alignment with an anatomical reference using dice coefficient (DC) and correlation ratio (CR) measures. These showed that B0 field-mapping and reversed-PE methods both improved correspondence between the MT-3DEPI and anatomical data, with more substantial improvements consistently obtained using the reversed-PE approach. Regional analyses demonstrated that the largest benefit of distortion correction, and in particular of the reversed-PE approach, occurred in frontal and temporal regions where susceptibility-induced distortions are known to be greatest, but had not led to complete signal dropout. In conclusion, distortion correction based on reversed-PE data has shown the greater capacity for achieving faithful alignment with anatomical data in the context of high-resolution fMRI at 7T using 3DEPI., Competing Interests: Declaration of Competing Interest The authors declare that they have no conflict of interest., (Copyright © 2023. Published by Elsevier Inc.)- Published
- 2023
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8. Phase unwrapping with a rapid opensource minimum spanning tree algorithm (ROMEO).
- Author
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Dymerska B, Eckstein K, Bachrata B, Siow B, Trattnig S, Shmueli K, and Robinson SD
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- Animals, Head, Magnetic Resonance Imaging, Rats, Algorithms, Brain diagnostic imaging
- Abstract
Purpose: To develop a rapid and accurate MRI phase-unwrapping technique for challenging phase topographies encountered at high magnetic fields, around metal implants, or postoperative cavities, which is sufficiently fast to be applied to large-group studies including Quantitative Susceptibility Mapping and functional MRI (with phase-based distortion correction)., Methods: The proposed path-following phase-unwrapping algorithm, ROMEO, estimates the coherence of the signal both in space-using MRI magnitude and phase information-and over time, assuming approximately linear temporal phase evolution. This information is combined to form a quality map that guides the unwrapping along a 3D path through the object using a computationally efficient minimum spanning tree algorithm. ROMEO was tested against the two most commonly used exact phase-unwrapping methods, PRELUDE and BEST PATH, in simulated topographies and at several field strengths: in 3T and 7T in vivo human head images and 9.4T ex vivo rat head images., Results: ROMEO was more reliable than PRELUDE and BEST PATH, yielding unwrapping results with excellent temporal stability for multi-echo or multi-time-point data. It does not require image masking and delivers results within seconds, even in large, highly wrapped multi-echo data sets (eg, 9 seconds for a 7T head data set with 31 echoes and a 208 × 208 × 96 matrix size)., Conclusion: Overall, ROMEO was both faster and more accurate than PRELUDE and BEST PATH, delivering exact results within seconds, which is well below typical image acquisition times, enabling potential on-console application., (© 2020 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)
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- 2021
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9. Real-time motion and retrospective coil sensitivity correction for CEST using volumetric navigators (vNavs) at 7T.
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Poblador Rodriguez E, Moser P, Auno S, Eckstein K, Dymerska B, van der Kouwe A, Gruber S, Trattnig S, and Bogner W
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- Humans, Magnetic Resonance Imaging, Phantoms, Imaging, Retrospective Studies, Algorithms, Image Processing, Computer-Assisted
- Abstract
Purpose: To explore the impact of temporal motion-induced coil sensitivity changes on CEST-MRI at 7T and its correction using interleaved volumetric EPI navigators, which are applied for real-time motion correction., Methods: Five healthy volunteers were scanned via CEST. A 4-fold correction pipeline allowed the mitigation of (1) motion, (2) motion-induced coil sensitivity variations, Δ B 1 - , (3) motion-induced static magnetic field inhomogeneities, ΔB
0 , and (4) spatially varying transmit RF field fluctuations, ΔB 1 + . Four CEST measurements were performed per session. For the first 2, motion correction was turned OFF and then ON in absence of voluntary motion, whereas in the other 2 controlled head rotations were performed. During post-processing Δ B 1 - was removed additionally for the motion-corrected cases, resulting in a total of 6 scenarios to be compared. In all cases, retrospective ∆B0 and - ΔB 1 + corrections were performed to compute artifact-free magnetization transfer ratio maps with asymmetric analysis (MTRasym )., Results: Dynamic Δ B 1 - correction successfully mitigated signal deviations caused by head motion. In 2 frontal lobe regions of volunteer 4, induced relative signal errors of 10.9% and 3.9% were reduced to 1.1% and 1.0% after correction. In the right frontal lobe, the motion-corrected MTRasym contrast deviated 0.92%, 1.21%, and 2.97% relative to the static case for Δω = 1, 2, 3 ± 0.25 ppm. The additional application of Δ B 1 - correction reduced these deviations to 0.10%, 0.14%, and 0.42%. The fully corrected MTRasym values were highly consistent between measurements with and without intended head rotations., Conclusion: Temporal Δ B 1 - cause significant CEST quantification bias. The presented correction pipeline including the proposed retrospective Δ B 1 - correction significantly reduced motion-related artifacts on CEST-MRI., (© 2020 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)- Published
- 2021
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10. A comparison of static and dynamic ∆B 0 mapping methods for correction of CEST MRI in the presence of temporal B 0 field variations.
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Poblador Rodriguez E, Moser P, Dymerska B, Robinson S, Schmitt B, van der Kouwe A, Gruber S, Trattnig S, and Bogner W
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- Adult, Brain diagnostic imaging, Echo-Planar Imaging, Female, Humans, Male, Phantoms, Imaging, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods
- Abstract
Purpose: To assess the performance, in the presence of scanner instabilities, of three dynamic correction methods which integrate ∆B
0 mapping into the chemical exchange saturation transfer (CEST) measurement and three established static ∆B0 -correction approaches., Methods: A homogeneous phantom and five healthy volunteers were scanned with a CEST sequence at 7 T. The in vivo measurements were performed twice: first with unaltered system frequency and again applying frequency shifts during the CEST acquisition. In all cases, retrospective voxel-wise ∆B0 -correction was performed using one intrinsic and two extrinsic [prescans with dual-echo gradient-echo and water saturation shift referencing (WASSR)] static approaches. These were compared with two intrinsic [using phase data directly generated by single-echo or double-echo GRE (gradient-echo) CEST readout (CEST-GRE-2TE)] and one extrinsic [phase from interleaved dual-echo EPI (echo planar imaging) navigator (NAV-EPI-2TE)] dynamic ∆B0 -correction approaches [allowing correction of each Z-spectral point before magnetization transfer ratio asymmetry (MTRasym ) analysis]., Results: All three dynamic methods successfully mapped the induced drift. The intrinsic approaches were affected by the CEST labeling near water (∆ω < |0.3| ppm). The MTRasym contrast was distorted by the frequency drift in the brain by up to 0.21%/Hz when static ∆B0 -corrections were applied, whereas the dynamic ∆B0 corrections reduced this to <0.01%/Hz without the need of external scans. The CEST-GRE-2TE and NAV-EPI-2TE resulted in highly consistent MTRasym values with/without drift for all subjects., Conclusion: Reliable correction of scanner instabilities is essential to establish clinical CEST MRI. The three dynamic approaches presented improved the ∆B0 -correction performance significantly in the presence of frequency drift compared to established static methods. Among them, the self-corrected CEST-GRE-2TE was the most accurate and straightforward to implement., (© 2019 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine.)- Published
- 2019
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11. The Impact of Echo Time Shifts and Temporal Signal Fluctuations on BOLD Sensitivity in Presurgical Planning at 7 T.
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Dymerska B, De Lima Cardoso P, Bachrata B, Fischmeister F, Matt E, Beisteiner R, Trattnig S, and Robinson SD
- Subjects
- Artifacts, Brain diagnostic imaging, Brain Mapping methods, Breath Holding, Female, Humans, Male, Middle Aged, Motion, Signal-To-Noise Ratio, Brain Neoplasms diagnostic imaging, Echo-Planar Imaging methods, Image Interpretation, Computer-Assisted methods, Preoperative Care methods
- Abstract
Objectives: Gradients in the static magnetic field caused by tissues with differing magnetic susceptibilities lead to regional variations in the effective echo time, which modifies both image signal and BOLD sensitivity. Local echo time changes are not considered in the most commonly used metric for BOLD sensitivity, temporal signal-to-noise ratio (tSNR), but may be significant, particularly at ultrahigh field close to air cavities (such as the sinuses and ear canals) and near gross brain pathologies and postoperative sites., Materials and Methods: We have studied the effect of local variations in echo time and tSNR on BOLD sensitivity in 3 healthy volunteers and 11 patients with tumors, postoperative cavities, and venous malformations at 7 T. Temporal signal-to-noise ratio was estimated from a 5-minute run of resting state echo planar imaging with a nominal echo time of 22 milliseconds. Maps of local echo time were derived from the phase of a multiecho GE scan. One healthy volunteer performed 10 runs of a breath-hold task. The t-map from this experiment served as a criterion standard BOLD sensitivity measure. Two runs of a less demanding breath-hold paradigm were used for patients., Results: In all subjects, a strong reduction in the echo time (from 22 milliseconds to around 11 milliseconds) was found close to the ear canals and sinuses. These regions were characterized by high tSNR but low t-values in breath-hold t-maps. In some patients, regions of particular interest in presurgical planning were affected by reductions in the echo time to approximately 13-15 milliseconds. These included the primary motor cortex, Broca's area, and auditory cortex. These regions were characterized by high tSNR values (70 and above). Breath-hold results were corrupted by strong motion artifacts in all patients., Conclusions: Criterion standard BOLD sensitivity estimation using hypercapnic experiments is challenging, especially in patient populations. Taking into consideration the tSNR, commonly used for BOLD sensitivity estimation, but ignoring local reductions in the echo time (eg, from 22 to 11 milliseconds), would erroneously suggest functional sensitivity sufficient to map BOLD signal changes. It is therefore important to consider both local variations in the echo time and temporal variations in signal, using the product metric of these two indices for instance. This should ensure a reliable estimation of BOLD sensitivity and to facilitate the identification of potential false-negative results. This is particularly true at high fields, such as 7 T and in patients with large pathologies and postoperative cavities.
- Published
- 2019
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12. Computationally Efficient Combination of Multi-channel Phase Data From Multi-echo Acquisitions (ASPIRE).
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Eckstein K, Dymerska B, Bachrata B, Bogner W, Poljanc K, Trattnig S, and Robinson SD
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- Algorithms, Computer Simulation, Contrast Media chemistry, Healthy Volunteers, Humans, Image Enhancement methods, Knee diagnostic imaging, Magnetic Resonance Imaging, Reproducibility of Results, Signal-To-Noise Ratio, Brain diagnostic imaging, Echo-Planar Imaging, Image Processing, Computer-Assisted methods
- Abstract
Purpose: To develop a simple method for combining multi-echo phase information from a number of coils in an array that requires no volume coil or additional scans and yields signal-to-noise ratio-optimal images that reflect only ΔB0-related phase., Theory and Methods: Two SNR optimal coil combination methods were developed which retrieve the ΔB0-related phase by determining the coil-dependent phase offsets. The first variant, MCPC-3D-S, requires the unwrapping of one phase image; the second variant, ASPIRE, allows unwrapping to be avoided if two echoes j and k satisfy the echo time relation m⋅TEk=(m+1)⋅TEj, where m is an integer, making this a particularly fast and robust approach. Both developed methods constitute improvements over a prior method, MCPC-3D, in terms of robustness and computational expense., Results: In the brain at 7 T, phase matching and contrast-to-noise ratio were higher with MCPC-3D-S and ASPIRE than with phase difference reconstruction, and similar to the reference coil-dependent Roemer combination. Unlike the Roemer and virtual reference coil methods, the proposed approaches also eliminated all non- ΔB0-related phase., Conclusion: MCPC-3D-S is an improvement over prior multi-echo methods, which is useful if the ASPIRE echo time condition cannot be fulfilled. ASPIRE is a particularly fast and robust approach that runs on the scanner's reconstructor in a small fraction of the acquisition time. Magn Reson Med 79:2996-3006, 2018. © 2017 International Society for Magnetic Resonance in Medicine., (© 2017 International Society for Magnetic Resonance in Medicine.)
- Published
- 2018
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13. In vivo phase imaging of human epiphyseal cartilage at 7 T.
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Dymerska B, Bohndorf K, Schennach P, Rauscher A, Trattnig S, and Robinson SD
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- Adolescent, Child, Collagen chemistry, Female, Growth Plate diagnostic imaging, Healthy Volunteers, Humans, Image Processing, Computer-Assisted, Imaging, Three-Dimensional, Male, Reproducibility of Results, Veins diagnostic imaging, Cartilage, Articular diagnostic imaging, Knee diagnostic imaging, Magnetic Resonance Imaging
- Abstract
Purpose: To assess the potential clinical utility of in vivo susceptibility-weighted imaging and quantitative susceptibility mapping of growth cartilage in the juvenile human knee at 7 T., Methods: High-resolution gradient-echo images of the knees of six healthy children and adolescents aged 6 to 15 were acquired with a 28-channel coil at 7 T. Phase images from the coils were combined using a short echo-time reference scan method (COMPOSER)., Results: Veins oriented perpendicular to the static B
0 field appeared doubled in susceptibility-weighted imaging, but not quantitative susceptibility mapping. Veins and layers in the cartilage were visible in all children up to the age of 13., Conclusions: Phase imaging using susceptibility-weighted imaging and quantitative susceptibility mapping allows the in vivo visualization of veins and layers in human growth cartilage. Magn Reson Med 79:2149-2155, 2018. © 2017 International Society for Magnetic Resonance in Medicine., (© 2017 International Society for Magnetic Resonance in Medicine.)- Published
- 2018
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14. The clinical relevance of distortion correction in presurgical fMRI at 7T.
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Lima Cardoso P, Dymerska B, Bachratá B, Fischmeister FPS, Mahr N, Matt E, Trattnig S, Beisteiner R, and Robinson SD
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- Adult, Artifacts, Brain Mapping standards, Brain Neoplasms surgery, Cerebrovascular Disorders surgery, Echo-Planar Imaging standards, Female, Humans, Image Processing, Computer-Assisted standards, Male, Middle Aged, Motor Cortex physiology, Neurosurgical Procedures, Preoperative Care, Brain Mapping methods, Brain Neoplasms diagnostic imaging, Cerebrovascular Disorders diagnostic imaging, Echo-Planar Imaging methods, Image Processing, Computer-Assisted methods, Motor Cortex diagnostic imaging
- Abstract
Presurgical planning with fMRI benefits from increased reliability and the possibility to reduce measurement time introduced by using ultra-high field. Echo-planar imaging suffers, however, from geometric distortions which scale with field strength and potentially give rise to clinically significant displacement of functional activation. We evaluate the effectiveness of a dynamic distortion correction (DDC) method based on unmodified single-echo EPI in the context of simulated presurgical planning fMRI at 7T and compare it with static distortion correction (SDC). The extent of distortion in EPI and activation shifts are investigated in a group of eleven patients with a range of neuropathologies who performed a motor task. The consequences of neglecting to correct images for susceptibility-induced distortions are assessed in a clinical context. It was possible to generate time series of EPI-based field maps which were free of artifacts in the eloquent brain areas relevant to presurgical fMRI, despite the presence of signal dropouts caused by pathologies and post-operative sites. Distortions of up to 5.1mm were observed in the primary motor cortex in raw EPI. These were accurately corrected with DDC and slightly less accurately with SDC. The dynamic nature of distortions in UHF clinical fMRI was demonstrated via investigation of temporal variation in voxel shift maps, confirming the potential inadequacy of SDC based on a single reference field map, particularly in the vicinity of pathologies or in the presence of motion. In two patients, the distortion correction was potentially clinically significant in that it might have affected the localization or interpretation of activation and could thereby have influenced the treatment plan. Distortion correction is shown to be effective and clinically relevant in presurgical planning at 7T., (Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
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15. A method for the dynamic correction of B 0 -related distortions in single-echo EPI at 7T.
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Dymerska B, Poser BA, Barth M, Trattnig S, and Robinson SD
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- Adult, Brain physiology, Echo-Planar Imaging instrumentation, Echo-Planar Imaging standards, Female, Functional Neuroimaging instrumentation, Functional Neuroimaging standards, Humans, Image Processing, Computer-Assisted standards, Male, Phantoms, Imaging, Brain diagnostic imaging, Echo-Planar Imaging methods, Functional Neuroimaging methods, Image Processing, Computer-Assisted methods
- Abstract
We propose a method to calculate field maps from the phase of each EPI in an fMRI time series. These field maps can be used to correct the corresponding magnitude images for distortion caused by inhomogeneity in the static magnetic field. In contrast to conventional static distortion correction, in which one 'snapshot' field map is applied to all subsequent fMRI time points, our method also captures dynamic changes to B
0 which arise due to motion and respiration. The approach is based on the assumption that the non-B0 -related contribution to the phase measured by each radio-frequency coil, which is dominated by the coil sensitivity, is stable over time and can therefore be removed to yield a field map from EPI. Our solution addresses imaging with multi-channel coils at ultra-high field (7T), where phase offsets vary rapidly in space, phase processing is non-trivial and distortions are comparatively large. We propose using dual-echo gradient echo reference scan for the phase offset calculation, which yields estimates with high signal-to-noise ratio. An extrapolation method is proposed which yields reliable estimates for phase offsets even where motion is large and a tailored phase unwrapping procedure for EPI is suggested which gives robust results in regions with disconnected tissue or strong signal decay. Phase offsets are shown to be stable during long measurements (40min) and for large head motions. The dynamic distortion correction proposed here is found to work accurately in the presence of large motion (up to 8.1°), whereas a conventional method based on single field map fails to correct or even introduces distortions (up to 11.2mm). Finally, we show that dynamic unwarping increases the temporal stability of EPI in the presence of motion. Our approach can be applied to any EPI measurements without the need for sequence modification., (Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2018
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16. Key clinical benefits of neuroimaging at 7T.
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Trattnig S, Springer E, Bogner W, Hangel G, Strasser B, Dymerska B, Cardoso PL, and Robinson SD
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- Brain Diseases metabolism, Brain Diseases pathology, Cerebral Cortex metabolism, Cerebral Cortex pathology, Humans, Magnetic Resonance Imaging standards, Magnetic Resonance Spectroscopy standards, Neuroimaging standards, Brain Diseases diagnostic imaging, Cerebral Cortex diagnostic imaging, Magnetic Resonance Imaging methods, Magnetic Resonance Spectroscopy methods, Neuroimaging methods
- Abstract
The growing interest in ultra-high field MRI, with more than 35.000 MR examinations already performed at 7T, is related to improved clinical results with regard to morphological as well as functional and metabolic capabilities. Since the signal-to-noise ratio increases with the field strength of the MR scanner, the most evident application at 7T is to gain higher spatial resolution in the brain compared to 3T. Of specific clinical interest for neuro applications is the cerebral cortex at 7T, for the detection of changes in cortical structure, like the visualization of cortical microinfarcts and cortical plaques in Multiple Sclerosis. In imaging of the hippocampus, even subfields of the internal hippocampal anatomy and pathology may be visualized with excellent spatial resolution. Using Susceptibility Weighted Imaging, the plaque-vessel relationship and iron accumulations in Multiple Sclerosis can be visualized, which may provide a prognostic factor of disease. Vascular imaging is a highly promising field for 7T which is dealt with in a separate dedicated article in this special issue. The static and dynamic blood oxygenation level-dependent contrast also increases with the field strength, which significantly improves the accuracy of pre-surgical evaluation of vital brain areas before tumor removal. Improvement in acquisition and hardware technology have also resulted in an increasing number of MR spectroscopic imaging studies in patients at 7T. More recent parallel imaging and short-TR acquisition approaches have overcome the limitations of scan time and spatial resolution, thereby allowing imaging matrix sizes of up to 128×128. The benefits of these acquisition approaches for investigation of brain tumors and Multiple Sclerosis have been shown recently. Together, these possibilities demonstrate the feasibility and advantages of conducting routine diagnostic imaging and clinical research at 7T., (Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
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17. In vivo MRI of the human finger at 7 T.
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Laistler E, Dymerska B, Sieg J, Goluch S, Frass-Kriegl R, Kuehne A, and Moser E
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- Computer Simulation, Humans, Imaging, Three-Dimensional, Magnetic Resonance Spectroscopy, Models, Anatomic, Phantoms, Imaging, Radio Waves, Signal-To-Noise Ratio, Fingers diagnostic imaging, Magnetic Resonance Imaging
- Abstract
Purpose: To demonstrate a dedicated setup for ultrahigh resolution MR imaging of the human finger in vivo., Methods: A radiofrequency coil was designed for optimized signal homogeneity and sensitivity in the finger at ultrahigh magnetic field strength (7 T), providing high measurement sensitivity. Imaging sequences (2D turbo-spin echo (TSE) and 3D magnetization-prepared rapid acquisition gradient echo (MPRAGE)) were adapted for high spatial resolution and good contrast of different tissues in the finger, while keeping acquisition time below 10 minutes. Data was postprocessed to display finger structures in three dimensions., Results: 3D MPRAGE data with isotropic resolution of 200 µm, along with 2D TSE images with in-plane resolutions of 58 × 78 µm
2 and 100 × 97 µm2 , allowed clear identification of various anatomical features such as bone and bone marrow, tendons and annular ligaments, cartilage, arteries and veins, nerves, and Pacinian corpuscles., Conclusion: Using this dedicated finger coil at 7 T, together with adapted acquisition sequences, it is possible to depict the internal structures of the human finger in vivo within patient-compatible measurement time. It may serve as a tool for diagnosis and treatment monitoring in pathologies ranging from inflammatory or erosive joint diseases to injuries of tendons and ligaments to nervous or vascular disorders in the finger. Magn Reson Med 79:588-592, 2018. © 2017 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited., (© 2017 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine.)- Published
- 2018
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18. Robust presurgical functional MRI at 7 T using response consistency.
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Lima Cardoso P, Fischmeister FPS, Dymerska B, Geißler A, Wurnig M, Trattnig S, Beisteiner R, and Robinson SD
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- Adolescent, Adult, Brain physiopathology, Electroencephalography, Female, Humans, Image Processing, Computer-Assisted, Male, Middle Aged, Young Adult, Brain diagnostic imaging, Brain Mapping, Epilepsy diagnostic imaging, Epilepsy physiopathology, Magnetic Resonance Imaging
- Abstract
Functional MRI is valuable in presurgical planning due to its non-invasive nature, repeatability, and broad availability. Using ultra-high field MRI increases the specificity and sensitivity, increasing the localization reliability and reducing scan time. Ideally, fMRI analysis for this application should identify unreliable runs and work even if the patient deviates from the prescribed task timing or if there are changes to the hemodynamic response due to pathology. In this study, a model-free analysis method-UNBIASED-based on the consistency of fMRI responses over runs was applied, to ultra-high field fMRI localizations of the hand area. Ten patients with brain tumors and epilepsy underwent 7 Tesla fMRI with multiple runs of a hand motor task in a block design. FMRI data were analyzed with the proposed approach (UNBIASED) and the conventional General Linear Model (GLM) approach. UNBIASED correctly identified and excluded fMRI runs that contained little or no activation. Generally, less motion artifact contamination was present in UNBIASED than in GLM results. Some cortical regions were identified as activated in UNBIASED but not GLM results. These were confirmed to show reproducible delayed or transient activation, which was time-locked to the task. UNBIASED is a robust approach to generating activation maps without the need for assumptions about response timing or shape. In presurgical planning, UNBIASED can complement model-based methods to aid surgeons in making prudent choices about optimal surgical access and resection margins for each patient, even if the hemodynamic response is modified by pathology. Hum Brain Mapp 38:3163-3174, 2017. © 2017 The Authors Human Brain Mapping Published by Wiley Periodicals, Inc., (© 2017 Wiley Periodicals, Inc.)
- Published
- 2017
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19. An illustrated comparison of processing methods for MR phase imaging and QSM: combining array coil signals and phase unwrapping.
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Robinson SD, Bredies K, Khabipova D, Dymerska B, Marques JP, and Schweser F
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- Diffusion Magnetic Resonance Imaging instrumentation, Humans, Image Enhancement instrumentation, Image Interpretation, Computer-Assisted instrumentation, Reproducibility of Results, Sensitivity and Specificity, Signal Processing, Computer-Assisted instrumentation, Algorithms, Brain anatomy & histology, Diffusion Magnetic Resonance Imaging methods, Image Enhancement methods, Image Interpretation, Computer-Assisted methods
- Abstract
Phase imaging benefits from strong susceptibility effects at very high field and the high signal-to-noise ratio (SNR) afforded by multi-channel coils. Combining the information from coils is not trivial, however, as the phase that originates in local field effects (the source of interesting contrast) is modified by the inhomogeneous sensitivity of each coil. This has historically been addressed by referencing individual coil sensitivities to that of a volume coil, but alternative approaches are required for ultra-high field systems in which no such coil is available. An additional challenge in phase imaging is that the phase that develops up to the echo time is "wrapped" into a range of 2π radians. Phase wraps need to be removed in order to reveal the underlying phase distribution of interest. Beginning with a coil combination using a homogeneous reference volume coil - the Roemer approach - which can be applied at 3 T and lower field strengths, we review alternative methods for combining single-echo and multi-echo phase images where no such reference coil is available. These are applied to high-resolution data acquired at 7 T and their effectiveness assessed via an index of agreement between phase values over channels and the contrast-to-noise ratio in combined images. The virtual receiver coil and COMPOSER approaches were both found to be computationally efficient and effective. The main features of spatial and temporal phase unwrapping methods are reviewed, placing particular emphasis on recent developments in temporal phase unwrapping and Laplacian approaches. The features and performance of these are illustrated in application to simulated and high-resolution in vivo data. Temporal unwrapping was the fastest of the methods tested and the Laplacian the most robust in images with low SNR. © 2016 The Authors. NMR in Biomedicine published by John Wiley & Sons Ltd., (© 2016 The Authors. NMR in Biomedicine published by John Wiley & Sons Ltd.)
- Published
- 2017
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20. Combining phase images from array coils using a short echo time reference scan (COMPOSER).
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Robinson SD, Dymerska B, Bogner W, Barth M, Zaric O, Goluch S, Grabner G, Deligianni X, Bieri O, and Trattnig S
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- Adult, Brain diagnostic imaging, Breast diagnostic imaging, Female, Humans, Leg diagnostic imaging, Male, Signal-To-Noise Ratio, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods
- Abstract
Purpose: To develop a simple method for combining phase images from multichannel coils that does not require a reference coil and does not entail phase unwrapping, fitting or iterative procedures., Theory and Methods: At very short echo time, the phase measured with each coil of an array approximates to the phase offset to which the image from that coil is subject. Subtracting this information from the phase of the scan of interest matches the phases from the coils, allowing them to be combined. The effectiveness of this approach is quantified in the brain, calf and breast with coils of diverse designs., Results: The quality of phase matching between coil elements was close to 100% with all coils assessed even in regions of low signal. This method of phase combination was similar in effectiveness to the Roemer method (which needs a reference coil) and was superior to the rival reference-coil-free approaches tested., Conclusion: The proposed approach-COMbining Phase data using a Short Echo-time Reference scan (COMPOSER)-is a simple and effective approach to reconstructing phase images from multichannel coils. It requires little additional scan time, is compatible with parallel imaging and is applicable to all coils, independent of configuration. Magn Reson Med 77:318-327, 2017. © 2015 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine., (© 2015 Wiley Periodicals, Inc.)
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- 2017
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21. Correcting dynamic distortions in 7T echo planar imaging using a jittered echo time sequence.
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Dymerska B, Poser BA, Bogner W, Visser E, Eckstein K, Cardoso P, Barth M, Trattnig S, and Robinson SD
- Subjects
- Adult, Algorithms, Brain anatomy & histology, Female, Humans, Image Interpretation, Computer-Assisted methods, Male, Reproducibility of Results, Sensitivity and Specificity, Artifacts, Brain physiology, Brain Mapping methods, Echo-Planar Imaging methods, Image Enhancement methods, Signal Processing, Computer-Assisted
- Abstract
Purpose: To develop a distortion correction method for echo planar imaging (EPI) that is able to measure dynamic changes in B
0 ., Theory and Methods: The approach we propose is based on single-echo EPI with a jittering of the echo time between two values for alternate time points. Field maps are calculated between phase images from adjacent volumes and are used to remove distortion from corresponding magnitude images. The performance of our approach was optimized using an analytical model and by comparison with field maps from dual-echo EPI. The method was tested in functional MRI experiments at 7T with motor tasks and compared with the conventional static approach., Results: Unwarping using our method was accurate even for head rotations up to 8.2°, where the static approach introduced errors up to 8.2 mm. Jittering the echo time between 19 and 25 ms had no measurable effect on blood oxygenation level-dependent (BOLD) sensitivity. Our approach reduced the distortions in activated regions to <1 mm and repositioned active voxels correctly., Conclusion: This method yields accurate distortion correction in the presence of motion. No reduction in BOLD sensitivity was observed. As such, it is suitable for application in a wide range of functional MRI experiments. Magn Reson Med 76:1388-1399, 2016. © 2015 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited., (© 2015 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine.)- Published
- 2016
- Full Text
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22. Comparison of Routine Brain Imaging at 3 T and 7 T.
- Author
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Springer E, Dymerska B, Cardoso PL, Robinson SD, Weisstanner C, Wiest R, Schmitt B, and Trattnig S
- Subjects
- Adult, Artifacts, Diffusion Magnetic Resonance Imaging methods, Female, Humans, Imaging, Three-Dimensional methods, Male, Middle Aged, Neuroimaging methods, Signal-To-Noise Ratio, Young Adult, Brain diagnostic imaging, Brain Diseases diagnostic imaging, Magnetic Resonance Imaging methods
- Abstract
Objective: The aim of this study was to compare quantitative and semiquantitative parameters (signal-to-noise ratio [SNR], contrast-to-noise ratio [CNR], image quality, diagnostic confidence) from a standard brain magnetic resonance imaging examination encompassing common neurological disorders such as demyelinating disease, gliomas, cerebrovascular disease, and epilepsy, with comparable sequence protocols and acquisition times at 3 T and at 7 T., Materials and Methods: Ten healthy volunteers and 4 subgroups of 40 patients in total underwent comparable magnetic resonance protocols with standard diffusion-weighted imaging, 2D and 3D turbo spin echo, 2D and 3D gradient echo and susceptibility-weighted imaging of the brain (10 sequences) at 3 T and 7 T. The subgroups comprised patients with either lesional (n = 5) or nonlesional (n = 4) epilepsy, intracerebral tumors (n = 11), demyelinating disease (n = 11) (relapsing-remitting multiple sclerosis [MS, n = 9], secondary progressive MS [n = 1], demyelinating disease not further specified [n = 1]), or chronic cerebrovascular disorders [n = 9]). For quantitative analysis, SNR and CNR were determined. For a semiquantitative assessment of the diagnostic confidence, a 10-point scale diagnostic confidence score (DCS) was applied. Two experienced radiologists with additional qualification in neuroradiology independently assessed, blinded to the field strength, 3 pathology-specific imaging criteria in each of the 4 disease groups and rated their diagnostic confidence. The overall image quality was semiquantitatively assessed using a 4-point scale taking into account whether diagnostic decision making was hampered by artifacts or not., Results: Without correction for spatial resolution, SNR was higher at 3 T except in the T2 SPACE 3D, DWI single shot, and DIR SPACE 3D sequences. The SNR corrected by the ratio of 3 T/7 T voxel sizes was higher at 7 T than at 3 T in 10 of 11 sequences (all except for T1 MP2RAGE 3D).In CNR, there was a wide variation between sequences and patient cohorts, but average CNR values were broadly similar at 3 T and 7 T.DCS values for all 4 pathologic entities were higher at 7 T than at 3 T. The DCS was significantly higher at 7 T for diagnosis and exclusion of cortical lesions in vascular disease. A tendency to higher DCS at 7 T for cortical lesions in MS was observed, and for the depiction of a central vein and iron deposits within MS lesions. Despite motion artifacts, DCS values were higher at 7 T for the diagnosis and exclusion of hippocampal sclerosis in mesial temporal lobe epilepsy (improved detection of the hippocampal subunits). Interrater agreement was 69.7% at 3 T and 93.3% at 7 T. There was no significant difference in the overall image quality score between 3 T and 7 T taking into account whether diagnostic decision making was hampered by artifacts or not., Conclusions: Ultra-high-field magnetic resonance imaging at 7 T compared with 3 T yielded an improved diagnostic confidence in the most frequently encountered neurologic disorders. Higher spatial resolution and contrast were identified as the main contributory factors.
- Published
- 2016
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23. Improving the clinical potential of ultra-high field fMRI using a model-free analysis method based on response consistency.
- Author
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Cardoso PL, Fischmeister FP, Dymerska B, Geißler A, Wurnig M, Trattnig S, Beisteiner R, and Robinson SD
- Subjects
- Adult, Algorithms, Artifacts, Brain diagnostic imaging, Brain Mapping methods, False Positive Reactions, Female, Healthy Volunteers, Hemodynamics, Humans, Image Processing, Computer-Assisted methods, Linear Models, Male, Motion, Preoperative Period, Reproducibility of Results, Treatment Outcome, Young Adult, Magnetic Resonance Imaging, Models, Neurological
- Abstract
Objective: To develop an analysis method that is sensitive to non-model-conform responses often encountered in ultra-high field presurgical planning fMRI. Using the consistency of time courses over a number of experiment repetitions, it should exclude low quality runs and generate activation maps that reflect the reliability of responses., Materials and Methods: 7 T fMRI data were acquired from six healthy volunteers: three performing purely motor tasks and three a visuomotor task. These were analysed with the proposed approach (UNBIASED) and the GLM., Results: UNBIASED results were generally less affected by false positive results than the GLM. Runs that were identified as being of low quality were confirmed to contain little or no activation. In two cases, regions were identified as activated in UNBIASED but not GLM results. Signal changes in these areas were time-locked to the task, but were delayed or transient., Conclusion: UNBIASED is shown to be a reliable means of identifying consistent task-related signal changes regardless of response timing. In presurgical planning, UNBIASED could be used to rapidly generate reliable maps of the consistency with which eloquent brain regions are activated without recourse to task timing and despite modified hemodynamics.
- Published
- 2016
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24. Scaling dependence and tailoring of the pinning field in FePt-based exchange coupled composite media.
- Author
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Lee J, Makarov D, Brombacher C, Dymerska B, Suess D, Albrecht M, and Fidler J
- Abstract
We studied exchange coupled composite (ECC) media with an out-of-plane easy axis consisting of hard magnetic L1(0) chemically ordered FePtCu alloy films and magnetically softer [Co/Pt](N) multilayer stacks. By tailoring the structural properties of the ternary FePtCu alloy and [Co/Pt](N) multilayers, we can tune the magnetic parameters of the composite in a wide range. This allowed us to address experimentally one of the most crucial properties determining the performance of ECC media, namely the pinning field of the magnetic domain wall present at the interface between the hard and soft layers. We demonstrate that the pinning field is proportional to the difference of the magnetic anisotropy constants of the hard and soft layers, which confirms the theoretical predictions. Furthermore, we show that the pinning field can be efficiently decreased after an additional annealing step. Transmission electron microscopy investigations indicated that the origin of the observed effect is due to a heat-induced phase transformation of iron oxide present at the interface between the hard and soft layers. This study reveals that tailoring the properties of the hard/soft interface is another efficient tuning knob for optimization of the performance of ECC media.
- Published
- 2014
- Full Text
- View/download PDF
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