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Simple Summary: Freshwater mussels create habitat, filter water, and enhance food webs, but they are also among the world's most imperiled taxa. Conservation efforts largely rely on captive propagation in which mussels are grown in protected aquaculture environments (hatcheries) for later release. Recent evidence has highlighted the importance of pathogens in population losses of freshwater mussels. In response to ongoing mass mortality events of freshwater mussels in the Upper Tennessee River Basin in Virginia and Tennessee, USA, we conducted a multi-year study to document viruses across multiple restoration sites and compare them to viruses in mussels from the hatchery. Viral communities changed greatly after mussels were released. Of the 681 viruses of the 27 families we documented, only 20 viruses were found exclusively in hatchery mussels, compared to 451 viruses found only in mussels stocked to the wild. After release, mussels rapidly acquired new viruses, and the number of viruses increased steadily over time. These findings have implications for how mussel introduction programs might be managed for greater success, for example, by incorporating acclimatization periods prior to full release. Freshwater mussels (order: Unionida) are highly imperiled globally and are increasingly the focus of captive propagation efforts to protect and restore wild populations. The Upper Tennessee River Basin (UTRB) in Virginia is a freshwater biodiversity hotspot hosting at least 45 of North America's ~300 species of freshwater mussels, including 21 threatened and endangered species listed under the U.S. Endangered Species Act. Recent studies have documented that viruses and other microbes have contributed to freshwater mussel population declines in the UTRB. We conducted a multi-year longitudinal study of captive-reared hatchery mussels released to restoration sites throughout the UTRB to evaluate their viromes and compare them to captive hatchery environments. We documented 681 viruses from 27 families. The hatchery mussels had significantly less viruses than those deployed to wild sites, with only 20 viruses unique to the hatchery mussels. After the hatchery mussels were released into the wild, their number of viruses initially spiked and then increased steadily over time, with 451 viruses in total unique to the mussels in the wild. We found Clinch densovirus 1 (CDNV-1), a virus previously associated with mass mortality events in the Clinch River, in all samples, but the wild site mussels consistently had significantly higher CDNV-1 levels than those held in the hatchery. Our data document substantial differences between the viruses in the mussels in the hatchery and wild environments and rapid virome shifts after the mussels are released to the wild sites. These findings indicate that mussel release programs might benefit from acclimatization periods or other measures to mitigate the potential negative effects of rapid exposure to infectious agents found in natural environments. [ABSTRACT FROM AUTHOR]

Hymenocallis henryae is a rare, charismatic spider lily endemic to the Florida panhandle. Currently under review to determine if listing under the Endangered Species Act is warranted, this species has undescribed genetic diversity, information crucial to the listing process. We conducted field observations of 21 historic populations across the species' geographical range and performed genomic analyses of 279 individuals from 19 extant populations. Most populations had fewer than 40 individuals, while populations with >100 individuals were found exclusively on managed lands. Genetic diversity was uniformly low within populations (HE: 0.074–0.093), with low to moderate inbreeding coefficients (FIS: 0.068–0.431). Genetic differentiation was relatively low among most populations (FST: 0–0.098), although there was statistical support for isolation by distance. In addition, we found high genetic similarity and lack of population structure across the species range. Clonal propagation through fused bulbs is a common reproductive strategy. We confirmed current threats (habitat change, residential development, fire suppression) and identified several coastal populations threatened by sea level rise. It is recommended to continue with in situ protection and management as well as the establishment of ex situ living collections to preserve populations most at risk of extirpation from habitat loss and degradation. [ABSTRACT FROM AUTHOR]

Macrochelys temminckii (alligator snapping turtle) is an aquatic turtle endemic to the southeastern United States that was proposed for listing under the Endangered Species Act in 2021. In the present study we analyzed total mercury (THg) concentrations in skeletal muscle, tail clips, and nail tissue of 93 M. temminckii sampled from 14 waterbodies in eastern Texas (USA). Our objectives were to assess (1) the degree of correlation between internal tissue (skeletal muscle and tail clip samples) and keratin (nail samples), (2) the influence of ecological factors (turtle size and waterbody/sampling site) on THg concentrations, and (3) whether THg concentrations were high enough to pose a risk to human consumers. The mean (±SE) THg concentrations of muscle and nail were 1.16 ± 0.08 μg/g dry weight and 4.21 ± 0.24 μg/g dry weight, respectively, and THg concentrations were highly dependent on the sampling site. The THg concentrations of nails were correlated with muscle concentrations (R2 = 0.56, p < 0.001). The effect of body size on THg concentrations varied by sampling site, indicating that size is not a good predictor of Hg concentration across sites. Finally, THg concentrations in M. temminckii of eastern Texas were high enough to pose a potential risk to human health based on US Environmental Protection Agency dietary guidelines. Environ Toxicol Chem 2024;43:1903–1913. © 2024 SETAC. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA. [ABSTRACT FROM AUTHOR]

Simple Summary: Sharks belong to the class Chondrichthyes in the phylum Chordata. They are widely distributed in tropical, temperate, and polar oceans worldwide. As the top predator in the marine food chain, sharks have late sexual maturity and a long reproductive cycle. In recent years, due to the threat of illegal fishing and overfishing, their numbers have fallen sharply, and 23 species of sharks have been listed in protected lists, which poses a direct threat to the balance of marine ecosystems. In order to explore ways to increase the number of sharks by improving their reproductive performance under artificial breeding conditions, we used the striped bamboo shark (Chilosophy plagiosum) as an experimental animal, which has been listed as a near-threatened species in the Red List of Endangered Species of the World Conservation Union and legally bred in Chimelong Ocean Kingdom of Zhuhai, China. The results of the breeding experiment showed that feeding sharks a nutritional fortifier in the breeding season can improve the spawning quantity and egg quality of the striped bamboo shark, which provides new ideas and strategies for improving the protection and utilization level of shark resources, and has important economic, ecological, and social benefits. To explore a method of improving the reproductive performance of the striped bamboo shark, three groups (D0, D1, and D2) of mature individuals were fed squid with (D1 and D2) or without (D0) a nutritional fortifier during the breeding seasons of 2022 and 2023. Compared with the D0 group, the D1 and D2 groups had an increase of 20.90% and 31.34% in total eggs, increases of 32.73% and 41.82% in the proportion of lecithal eggs, and a total 119.07% increase in hatching rate, respectively, in 2022. In 2023, the corresponding increase was 17.12% and 9.91% in total eggs, 19.63% and 12.15% in the proportion of lecithal eggs, 43.37% and 43.94% in fertilization rate, 23.94% and 22.22% in hatchability rate, and 66.70% and 8.70% in the survival rate of fry. Moreover, the levels of serum estradiol, testosterone, progesterone, albumin, and total antioxidant capacity and the levels of ARA, EPA, DHA, n-3 PUFA, and n-6 PUFA in both serum and lecithal eggs significantly increased, while the levels of serum triglyceride and total cholesterol were the opposite (p < 0.05). The results demonstrate that feeding the sharks with a nutritional fortifier can increase spawn production and the quality of eggs, regulate the production of sex steroids, and improve the nutrition of eggs and the health of broodstocks. [ABSTRACT FROM AUTHOR]

This review aims to summarize information critical to the conservation of the federally listed endangered species of South Texas, which occur along the border of Texas and Mexico. This paper describes the characteristics, habitat, population status, distribution, life history, threats, and restoration of endangered plant species of the Lower Rio Grande Valley, Texas, which includes Cameron, Willacy, Hidalgo, and Starr County. Seven federally listed species are considered including Ambrosia cheiranthifolia, Asclepias prostrata, Astrophytum asterias, Ayenia limitaris, Manihot walkerae, Lesquerella thamnophila (syn. Physaria thamnophila), and Thymophylla tephroleuca. An eighth species, Physostegia correllii is under consideration for federal listing by the U.S. Fish and Wildlife Service. This paper assembles information on the background, biological status, major threats, and conservation to aid managers and the scientific community in restoring and managing these species. [ABSTRACT FROM AUTHOR]

This document emphasizes the importance of including fungi in wildlife trade research and policy. Fungi play a vital role in ecosystem functions and provide medicines and food globally. However, fungi have been neglected in research, leaving species vulnerable to exploitation. The document proposes a research agenda to improve the conservation status of traded species, including studying the ecological impacts of fungi harvesting, exploring the potential of wild fungi for food security, and addressing the impacts of illegal trade. It also highlights the need for local collaboration, initiatives to reduce wild harvesting, and integrating fungi into conservation policies. Overall, the document stresses the urgent need to protect biodiversity and the communities that depend on fungi. [Extracted from the article]

Introduction: The black coral Leiopathes glaberrima is a key component of deep-sea animal forests of the Western Mediterranean and North-Atlantic hard bottoms. Due to its ecological role, biological characteristics and sensitivity to fishing activities, it has been included in the Annex II of the Barcelona Convention, listed as an endangered species in IUCN Red Lists, and recognized as an indicator of Vulnerable Marine Ecosystems by the FAO. Methods: During a survey conducted in the Strait of Sicily, 140 ROV transects were carried out allowing the characterization of environmental preferences, associated fauna and population structure of L. glaberrima in the study area. Results and discussion: 1020 colonies were distributed between 165 and 672 meters and arranged in 17 patches and isolated colonies. The average height was determined to be 40.9 ± 1.0 cm, with the range spanning from a minimum of 5 cm up to nearby 200 cm. Pristine colonies accounted for 62.9%, mainly constituted by small-sized individuals densely aggregated (up to 14.5/m2 in a single frame) in the eastern part of the area. 24.5% of the specimens were dead and localized in the western margin where we reported a rare case of mass mortality in the deep-sea environment and the first ever described for black corals, opening new scenarios regarding the possibility that these events can occur in environments previously considered safe from danger. The triggering causes of these events in inaccessible environments are actually only hypothesized, but it is not to be excluded that, sooner or later, a similar effect could potentially result from anthropogenic climate changes. [ABSTRACT FROM AUTHOR]

Banteng (Bos javanicus) is listed as an endangered species because of a global population decline of at least 50% over the last 25 years. The Western Forest Complex (WEFCOM) of Thailand has been identified as a priority site for banteng population recovery, and Huai Kha Keang Wildlife Sanctuary (HKK) is the most important source site for this species within the WEFCOM. We have provided evidence and discussed banteng dispersal from HKK to Thung Yai Naresuan West Wildlife Sanctuary (TYW). We sampled an area of 147 km2 in banteng habitat next to the border between HKK and TYW using camera traps. We divided the sampled area into four grid cells and placed camera traps during January to December 2022. We setup the camera traps near saltlicks and natural water sources, as important resources for banteng, to maximize capture probability. In total, 2835 trap days were obtained. Bantengs were captured in all seasons (RAI = 1.66), especially in dry dipterocarp forest, which contains the ground forage availability for banteng, and the low‐slope area with elevation 600–700 m adjacent to the border between HKK and TYW. The results highlighted that banteng, which had never been reported in TYW before, appeared there for the first time. They most likely dispersed from the population source in HKK and settled in a habitat that is considered suitable for them. The habitat management and protection are significant for the future recovery of banteng populations in the TYW and the rest of protected areas in the WEFCOM. [ABSTRACT FROM AUTHOR]

The utilization of medicinal plants has been a longstanding tradition -- providing natural remedies with cultural and therapeutic significance, especially in the context of postpartum care. Thus, this study aims to document the usage of medicinal plants in postpartum recuperation, specifically in herbal steaming and bathing in the upland community of Leon, Iloilo, the Philippines. Semi-structured interviews were conducted with 34 key informants using a snowball sampling method from October--November 2022 and in March 2024, thereby resulting in the documentation of 70 medicinal plant species distributed in 64 genera and 35 families. The Fabaceae family was most represented with seven species, followed by Poaceae with six species, and Lamiaceae with five species. Most of the documented species are non-native (51%) and cosmopolitan, categorized as "least concern" (50%) in the IUCN Red List of Endangered Species. A variety of medicinal plants were documented -- including trees (57%), herbs (20%), shrubs (17%), and climbers (6%). Roots (64%) and leaves (24%) were the plant parts used most often, and decoction was the primary form of preparation. These medicinal plants can be found growing within the community's vicinity, with most of them (51%) found in forested areas and the rest (49%) being cultivated. The use value (UV) and family use value (FUV) indices were calculated to evaluate the plant's importance. Pittosporum pentandrum (Blanco) Merr. had the highest (0.91) UV, followed by Citrus maxima (Burm.) Merr. and Justicia gendarussa Burm.f. (0.88), and Bambusa spinosa Roxb. (0.85). Pittosporaceae (0.91) and Hypericaceae (0.62) had the highest FUVs. The findings of this study will provide a foundation for additional scientific validation of the biological properties of the documented plants, specifically focusing on the most valued species, and raise awareness for the preservation of cultural practices and beliefs regarding postpartum care for women. [ABSTRACT FROM AUTHOR]

Extraction of oil and gas occurs around the world and associated worksite activity can affect native species, even when some good habitat remains. Understanding the possible negative effects is important for management of protected species. Blunt-nosed Leopard Lizards (Gambelia sila) are a state- and federally listed endangered species in the San Joaquin Desert of California, and part of their remaining range coincides with oil field operations. In 2015 and 2016, we used radiotelemetry to study home ranges and movements of G. sila living in an oil field with limited infrastructure and roads (a light-density oil field constructed from 2011 to 2014) and at a control site of native habitat about 3 km away. We did not find significant differences between the oil field and control site in either home-range size or daily distances moved. We did, however, find that the number of predation events was significantly greater at the oil field site, assuming that known predation occurrences represented all predation. Predation by birds was greater at the oil field site and likely was facilitated by predator perching locations provided by power poles, transmission lines, and other tall vertical structures associated with the oil field. No similar structures or other perching locations for large predatory birds existed at the control site. Only a twin-pole, three-wire transmission line existed adjacent to the oil field prior to its development. Given that G. sila are endangered largely because of habitat loss, their recovery may benefit from minimizing these hazards in oil fields that currently support the species. [ABSTRACT FROM AUTHOR]

Etheostoma striatulum (Striated Darter) is an increasingly rare darter found in the middle-to-upper regions of the Duck River watershed in Tennessee. This rarity, coupled with a lack of collection and sampling, has put them in review for listing under the Endangered Species Act. Because of the Striated Darters' reclusive and cryptic behavior, conventional techniques tend to be less effective for detection, requiring more precise and sensitive methods. To provide information regarding distribution and occupancy within the Duck River, we used molecular detection of species-specific environmental DNA to test for presence of the species at historical sampling sites. Assessments indicate that Striated Darter is persisting in all tributaries of historical occurrence, with the addition of 4 new tributaries. However, given that 16 sites produced positive signals for less than a third of qPCR replicates, it appears that 60% of these populations are persisting at low detection levels. Detection was positively correlated with turbidity, which could be explained by their preference for lower-velocity habitats. Our results will assist with identifying critical-habitat locations for the update on the status of Striated Darter while also aiding in the standardization of eDNA-assay development for rare and cryptic species. [ABSTRACT FROM AUTHOR]

Simple Summary: This study investigated core habitat areas for yellow-throated martens and leopard cats, two endangered forest species sensitive to habitat fragmentation in Korea. Overlaying the InVEST-HQ and MaxEnt models, priority conservation areas were identified by analyzing gaps in currently protected areas. The core area (14.7%) was mainly distributed in forests such as the Baekdudaegan Mountains Reserve and 12.9% was outside protected areas, and only 1.8% was protected. Conservation priority areas were identified as those with more than 95% forest cover, offering an appropriate habitat for the two species. These findings can be used to identify priority conservation areas through objective habitat analysis and as a basis for protected area designation and assessment of endangered species habitat conservation, thereby contributing to biodiversity and ecosystem conservation. This study investigated core habitat areas for yellow-throated martens (Martes flavigula) and leopard cats (Prionailurus bengalensis), two endangered forest species sensitive to habitat fragmentation in Korea. Overlaying the InVEST-HQ and MaxEnt models, priority conservation areas were identified by analyzing gaps in currently protected areas. The InVEST-HQ model showed that habitat quality ranged from 0 to 0.86 on a scale from 0 to 1, and the majority of the most suitable areas on the Environmental Conservation Value Assessment Map, designated as grade 1, were derived correctly. The MaxEnt model analysis accurately captured the ecological characteristics of the yellow-throated marten and the leopard cat and identified probable regions of occurrence. We analyzed the most suitable yellow-throated marten and leopard cat habitats by superimposing the two results. Gap analysis determined gaps in existing protected areas and identified priority conservation areas. The core area (14.7%) was mainly distributed in forests such as the Baekdudaegan Mountains Reserve in regions such as Gyeongbuk, Gyeongnam, and Gangwon; 12.9% was outside protected areas, and only 1.8% was protected. The overlap results between protected and non-protected areas were compared with different land use types. Conservation priority areas were identified as those with more than 95% forest cover, offering an appropriate habitat for the two species. These findings can be used to identify priority conservation areas through objective habitat analysis and as a basis for protected area designation and assessment of endangered species habitat conservation, thereby contributing to biodiversity and ecosystem conservation. [ABSTRACT FROM AUTHOR]

The host genes play a crucial role in shaping the composition and structure of the gut microbiome. Red deer is listed as an endangered species by the International Union for the Conservation of Nature, and its pilose antlers have good medicinal value. Hybridization can lead to heterosis, resulting in increased pilose antler production and growth performance in hybrid deer. However, the role of the gut microbiome in hybrid deer remains largely unknown. In this study, alpha and beta diversity analysis showed that hybridization altered the composition and structure of the gut microbiome of the offspring, with the composition and structure of the hybrid offspring being more similar to those of the paternal parents. Interestingly, the LefSe differential analysis showed that there were some significantly enriched gut microbiome in the paternal parents (such as g_Prevotellaceae UCG-003, f_Bacteroidales RF16 group; Ambiguous_ taxa, etc.) and the maternal parents (including g_Alistipes, g_Anaerosporobacter, etc.), which remained significantly enriched in the hybrid offspring. Additionally, the hybrid offspring exhibited a significant advantage over the parental strains, particularly in taxa that can produce short-chain fatty acids, such as g_ Prevotellaceae UCG-003, g_Roseburia, g_Succinivibrio, and g_Lachnospiraceae UCG-006. Similar to bacterial transmission, metagenomic analysis showed that some signaling pathways related to pilose antler growth ("Wnt signaling pathway," "PI3K Akt signaling pathway," "MAPK signaling pathway") were also enriched in hybrid red deer after hybridization. Furthermore, metabolomic analysis revealed that compared with the paternal and maternal parents, the hybrid offspring exhibited significant enrichment in metabolites related to "Steroid hormone biosynthesis," "Tryptophan metabolism," "Valine, leucine and isoleucine metabolism," and "Vitamin B metabolism." Notably, the metagenomic analysis also showed that these metabolic pathways were significantly enriched in hybrid deer. Finally, a correlation analysis between the gut microbiome and metabolites revealed a significant positive correlation between the enriched taxa in hybrid deer, including the Bacteroidales RF16 group, Prevotellaceae, and Succinivibrio, and metabolites, such as 7a-hydroxytestosterone, L-kynurenine, indole, L-isoleucine, and riboflavin. The study contributes valuable data toward understanding the role of the gut microbiome from red deer in hybridization and provides reference data for further screening potential probiotics and performing microbial-assisted breeding that promotes the growth of red deer pilose antlers and bodies, development, and immunity. [ABSTRACT FROM AUTHOR]

The Chinese giant salamander (Andrias davidianus), listed as an endangered species under "secondary protection" in China, faces significant threats due to ecological deterioration and the expansion of human activity. Extensive field investigations are crucial to ascertain the current status in the wild and to implement effective habitat protection measures to safeguard this species and support its population development. Traditional survey methods often fall short due to the elusive nature of the A. davidianus, presenting challenges that are time-consuming and generally ineffective. To overcome these obstacles, this study developed a real-time monitoring method that uses environmental DNA (eDNA) coupled with recombinase polymerase amplification and lateral flow strip (RPA-LFD). We designed five sets of species-specific primers and probes based on mitochondrial genome sequence alignments of A. davidianus and its close relatives. Our results indicated that four of these primer/probe sets accurately identified A. davidianus, distinguishing it from other tested caudata species using both extracted DNA samples and water samples from a tank housing an individual. This method enables the specific detection of A. davidianus genomic DNA at concentrations as low as 0.1 ng/mL within 50 min, without requiring extensive laboratory equipment. Applied in a field survey across four sites in Huangshan City, Anhui Province, where A. davidianus is known to be distributed, the method successfully detected the species at three of the four sites. The development of these primer/probe sets offers a practical tool for field surveying and monitoring, facilitating efforts in population recovery and resource conservation for A. davidianus. [ABSTRACT FROM AUTHOR]

Anthriscus sylvestris (L.) Hoffm. (Apiaceae), commonly known as wild chervil, has gained scientific interest owing to its diverse phytochemical profile and potential therapeutic applications. The plant, despite being categorized as a noxious weed, is traditionally used in treating various conditions like headaches, dressing wounds, and as a tonic, antitussive, antipyretic, analgesic, and diuretic. Its pharmacological importance stems from containing diverse bioactive lignans, especially aryltetralins and dibenzylbutyrolactones. One of the main compounds of A. sylvestris, deoxypodophyllotoxin, among its wide-ranging effects, including antitumor, antiproliferative, antiplatelet aggregation, antiviral, anti-inflammatory, and insecticidal properties, serves as a pivotal precursor to epipodophyllotoxin, crucial in the semisynthesis of cytostatic agents like etoposide and teniposide. The main starting compound for these anticancer medicines was podophyllotoxin, intensively isolated from Sinopodophyllum hexandrum, now listed as an endangered species due to overexploitation. Since new species are being investigated as potential sources, A. sylvestris emerges as a highly promising candidate owing to its abundant lignan content. This review summarizes the current knowledge on A. sylvestris, investigating its biological and morphological characteristics, and pharmacological properties. Emphasizing the biological activities and structure–activity relationship, this review underscores its therapeutic potential, thus encouraging further exploration and utilization of this valuable plant resource. [ABSTRACT FROM AUTHOR]

Anodonta anatina, a widely distributed Eurasian freshwater mussel, has dramatically declined and listed as endangered species in IUCN Red List in some parts of the Europe. To better understand its basic biology and possible sex-dependent effects of parasitism on reproduction, we investigated the reproductive traits, trematode parasitism and growth between November 2020 and October 2021. Our data from a Finnish population indicates male-biased sex ratio and the gonadal development lasting throughout the year with a bradytictic brooding pattern. Gonadosomatic index of both sexes peaked in May and declined in June. Mature oocytes were smaller sized than those of previously studied unionids, fecundity was fairly low, and the maximum predicted lifespan was 14 years. Gonads were infected with digenean trematode parasites, Rhipidocotyle campanula being the dominant species. Interestingly, trematode infection rate was higher in females than in males. In July, when the water temperature reached its annual maximum, the trematode prevalence also peaked, which was accompanied with 16% of mussels being sterile. The trematode parasitism was thus negatively associated with reproduction, that might become even more affected if parasitism increases along with the predicted climate warming, which should be considered in possible future conservation and aquaculture efforts of this species. [ABSTRACT FROM AUTHOR]

Chamaecyparis obtusa (Siebold & Zucc.) Endl., which belongs to the Cupressaceae family, occurs naturally in North America and Asia, especially in Korea, Taiwan and Japan, where it is an evergreen, coniferous, sacred, ethnic tree. It has many useful varieties that are widespread throughout the world and grown for decorative purposes. It is most commonly used as an ornamental plant in homes, gardens or parks. It is also widely used in many areas of the economy; for example, its wood is used in architecture as well as furniture production. In addition, oil extracted from Chamaecyparis obtusa is increasingly used in cosmetology for skin care. Due to its wide economic demand, mainly in Japan, it represents the largest area of plantation forest. Despite this, it is on the red list of endangered species. Its use in ethnopharmacology has led to more and more research in recent years in an attempt to elucidate the potential mechanisms of its various biological activities, such as antimicrobial, antioxidant, anticancer, antidiabetic, antiasthmatic, anti-inflammatory, antiallergic, analgesic and central nervous system effects. It has also been shown that Chamaecyparis obtusa can be used as an insect repellent and an ingredient in plant disease treatment. This thesis provides a comprehensive review of the biological studies to date, looking at different areas of the economic fields of potential use of Chamaecyparis obtusa. [ABSTRACT FROM AUTHOR]

Toona ciliata is a deciduous or semi-deciduous tree species and belongs to the Toona genus of the Meliaceae family. Owing to low natural regeneration and over-exploitation, the species is listed as an endangered species at level II in China and its conservation has received increasing concern. Here, we sampled 447 individuals from 29 populations across the range-wide distribution of the T. ciliata complex in China and assessed their genetic variation using two chloroplast DNA markers. The results showed that the overall haplotype diversity and nucleotide diversity per site were high at h = 0.9767 and π = 0.0303 for the psbA-trnH fragment and h = 0.8999 and π = 0.0189 for the trnL-trnL fragment. Phylogenetic analysis supported the division of the natural distribution of T. ciliata complex into western and eastern regions. The genetic diversity was higher in the western region than in the eastern region, showing significant phylogeographic structure. Genetic differentiation among populations was moderate ( Φ s t = 42.87 % ), and the effects of isolation by distance (IBD) were significant. A neutrality test and mismatch distribution analysis indicated that the distribution of the T. ciliata complex generally did not expand, although a few local populations could likely expand after bottleneck effects. The overall results were complementary to and consolidated previous studies using mitochondrial and nuclear DNA markers. We finally discussed strategies for the genetic conservation of the T. ciliata complex. [ABSTRACT FROM AUTHOR]

Public perception of endangered species is crucial for successful management of community-based conservation and sustainability of national parks. By the method of choice experiment, our study evaluated conservation preferences and willingness to donate money for flagship and non-flagship species using a choice experiment with 409 residents living near the Lanstang river source of Sanjiangyuan National Park, China. We found that flagship species such as the Snow leopard (Pristine plateau) and White-lipped deer (Przewalskium albirostris) generated more conservation funds than non-flagship species. However, not all flagship species were accepted. Respondents disliked Tibetan brown bears (Ursus arctos pruinosus) due to direct human-wildlife conflicts such as bodily injury and property damage. Heterogeneity of preference was influenced by household income, religious beliefs, ethnicity, culture, and conservation awareness. Results can be used to establish a local community-participative framework by combining conservation motivations that alleviate human-wildlife conflict. [ABSTRACT FROM AUTHOR]

Sicklefin (Macrhybopsis meeki) and sturgeon chub (M. gelida) historically occurred throughout the Missouri River (MR), in some tributaries, and Mississippi River downstream of the MR. They have been species of U.S. state-level conservation concern and U.S. Endangered Species Act listing candidates since the 1990s. We applied analytical approaches from occupancy modeling to correlation to monitoring data spanning 23 years to assess relationships between occupancy and time, space, environmental factors, habitat, and other species. Sicklefin chub occupancy appeared higher in the early to mid-2000s and mid-to-late 2010s. A potential decline in occupancy occurred for sturgeon chub in the mid-to-late 2010s. Spatially, chub occupancy was depressed for 159 to 438 km downstream of MR dams. Among macrohabitats, inside bends had relatively high occupancy for both species; secondary connected channels had relatively high values for sturgeon chub. Co-occurrence was likely between sicklefin and sturgeon chub and between chubs and shovelnose sturgeon (Scaphirhybchus platorybchus) and channel catfish (Ictalurus punctatus). The observed co-occurrence of chubs and pallid sturgeon (Scaphirhynchus albus; PS) was potentially higher than expected for adult PS. For juvenile PS, co-occurrence was lower than expected in the Lower MR and potentially higher than expected in the Upper MR, warranting future research. Results from this research suggest management for the improvement of sicklefin and sturgeon chub populations may benefit other MR fish populations. [ABSTRACT FROM AUTHOR]

Aflatunia ulmifolia (Franch.) Vassilcz. (Rosaceae) is an ornamental plant commonly used for landscaping and is known to form hybrids with other species that have characteristics like frost-resistant and non-rotting rootstocks. However, it is listed as an endangered species in Kazakhstan and is difficult to grow through traditional propagation; thus, in the present study, in vitro regeneration using seed and nodal explants was attempted. Murashige and Skoog (MS), Woody Plant Medium, and Gamborg medium supplemented with different plant growth regulators were utilized. Maximum germination (51.7±4.4%) was achieved by supplementing MS medium with 1.0 mg L-1 6-benzyladenine (BA) in which maximum shoot length (1.91±0.11 cm), leaves per shoot (8.48±0.32), and shoots per seed (1.83±0.15) were also observed after 12 wk. Comparatively, nodal explants proved better as 58.9±2.9% bud break was noted, inducing 2.84±0.18 shoots per explant with 0.74±0.01 cm length and 5.96±0.17 leaves per shoot at 1.0 mg L-1 BA after 8 wk. Nodal derived shoots were further multiplied on MS medium in the presence of 1.5 mg L-1 BA where 3.90±0.32 shoots (96.7% response) formed with 1.33±0.04 cm length after 4 wk. These shoots were rooted in MS media augmented with 0.5 mg L-1 indole-3-acetic acid, which induced 3.5±0.3 roots per shoot (83.3% response) with 3.8±0.1 cm root length at the end of 4 wk. The plantlets were then transferred to peat:vermiculite (1:1 w/w) for hardening and acclimatization and were finally transferred in the open ground with 69.4% survival rate after 1 mo. This micropropagation protocol will be helpful for the conservation of the genetic resources and biodiversity for A. ulmifolia. [ABSTRACT FROM AUTHOR]

Context: The southern and central greater glider (Petauroides volans) is a nationally listed endangered species in Australia. The species depends upon mature native forest providing critical habitat resources including tree hollows. Aims: This study aimed to map and evaluate the tenure of patches of potential high-quality (core) habitat and corridors for the southern greater glider in Queensland. Methods: Within greater glider habitat, we mapped 10 ranked classes of relative forest maturity using a model comprising remotely sensed metrics of canopy height, above-ground living biomass and canopy cover at a 30 m resolution. We also modelled the optimum movement corridors within and between habitat patches. Key results: Results showed that 35% (4.943 million ha) of habitat was found in the more mature classes (Classes 7–9), which represent a proxy for associated limiting habitat resources, especially tree hollows. Mean patch size above a 1.6 ha threshold was found to be 122 ha and most patches (71%) were ≤10 ha, with 14 patches ≥100 000 ha. Freehold and leasehold lands hold 63.4% of the more mature habitat, multiple-use public forest 21.4% and nature conservation areas 12.8%. About half of the potential habitat is located on formally recognised Indigenous lands that represent different categories of Aboriginal ownership, management and other special rights. Conclusions: The protection of mature forest patches and movement corridors is necessary for the conservation of the greater glider, a nationally listed threatened species. Implications: Conservation interventions are needed, using a whole-of-landscape approach to protect core habitat and corridors from inappropriate land use. With increasing pressures on Australian forests, identifying old growth and mature habitats for threatened species is vital. We evaluated greater glider habitats and found that mature areas are vulnerable to human impacts. Protecting areas containing mature forests and hollow-bearing trees is crucial for the species' survival. [ABSTRACT FROM AUTHOR]

The Karner blue butterfly (Lycaeides melissa samuelis) (hereafter Karner blue) is a federally listed endangered species occurring in disjunct locations within the Midwest and Eastern United States. As a hostplant specialist and an ectotherm, the Karner blue is likely to be susceptible to effects of climate change. We undertook warming experiments to explore the temperature sensitivity of various Karner blue life history stages and traits. Over a two-year period, we exposed all Karner blue life stages to temperature increases of + 2, + 4, and + 6 °C above 1952–1999 mean temperatures. We analyzed the effect of these treatments on life history parameters likely related to fitness and population size, including development time, voltinism, degree-day accumulation, body weight, and morphology. Warming treatments resulted in earlier emergence and accelerated development, leading to additional generations. Warming also increased the number of degree-days accumulated during pre-adult development (i.e., egg hatch to eclosion). Results suggest that Karner blues developed in fewer days, in part, by putting on less mass as temperatures increased. As treatment temperature increased, adult body mass, length, and area decreased and voltinism increased. Females with lower adult mass and smaller body size produced fewer eggs. These results suggest a trade-off between accelerated development and decreased body size with decrease in adult mass and abdominal area being associated with reduced fecundity. Implications for insect conservation: Changes in development timing and in voltinism can negatively affect phenological matching between the Karner blue and its obligate host plant, Wild lupine (Lupinus perennis), resulting in population decrease. Poorer phenological matching between insect and hostplant can occur across multiple generations, for example, negatively affecting overwintering population size. With increasing temperatures, smaller females will produce fewer eggs, which can also lead to poorer population outcomes across generations. [ABSTRACT FROM AUTHOR]

Declines in populations of Pacific salmon Oncorhynchus spp. in the Pacific Northwest have led to listings under the Endangered Species Act. One objective of current recovery efforts is the restoration of freshwater and estuarine habitats, which had been occurring prior to Endangered Species Act listing but increased dramatically afterwards. However, few listed populations are improving. We believe that there are five factors contributing to the lack of population response to habitat restoration: Not enough restoration has been done.We are not doing the right things in the right places at the right times.Ongoing habitat degradation is offsetting restoration benefits.Not enough time has passed.Monitoring has been inadequate to detect changes in Pacific salmon abundance. All factors contribute to the disappointing progress on Pacific salmon recovery, although their importance varies. Two factors are more consistently significant than the others. Resources available to address habitat damage remain insufficient. The scale of the problem is large, so the response needs to be correspondingly large to yield desired outcomes. Of equal significance is the failure of restoration programs to identify elements controlling fish production. Implementing the right projects in the right places is key to improving the outcomes of restoration. [ABSTRACT FROM AUTHOR]

Limpets play an important role in structuring the intertidal fringe, one of the most heavily impacted marine habitats. A large number of limpet species are listed as Endangered or Vulnerable, including Patella ferruginea, one of the most endangered marine invertebrates in the Mediterranean Sea.Relocation attempts have been made as a conservation tool for reintroductions and population reinforcements for P. ferruginea. Some relocations were mandatory because of port infrastructure repairs in areas where viable populations of this limpet occurred. However, most relocations attempted to date have experienced high mortality rates, leading to the Spanish National Conservation Strategy not recommending this approach for this species.In this study, 84 individuals of P. ferruginea were relocated, using artificial portable plates (APPs) installed on the ripraps of the Port of Ceuta (Western Mediterranean Sea). These plates were divided into two groups and relocated: (i) as a translocation to a nearby site with similar environmental conditions to the donor area (procedural control); and (ii) as a reinforcement translocation to a relatively distant location (30 km, Algeciras Bay) (experimental procedure). The mortality of the translocated individuals in the procedural control after 10 weeks was similar (6.6%) to that expected for natural populations, whereas the mortality rate for individuals in the reinforcement translocation was higher (26.6%).The APPs have been proven to be a feasible method for translocation, as they result in relatively low mortality by preventing the stress and damage caused by limpet detachment from substrata. The constraints caused by reinforcement translocation to a new environment seem to be the cause of the increased mortality, as the translocated limpets changed their home scar at a much higher rate than the control limpets did. [ABSTRACT FROM AUTHOR]

Silurus lanzhouensis is a large endemic fish exclusively found in the middle and upper reaches of China's Yellow River, with a restricted distribution range and a small population size and is listed as an endangered species. To investigate the potential genetic factors contributing to the observed decrease in the population of S. lanzhouensis, we have successfully assembled the first chromosome-level genome of S. lanzhouensis. This genome comprises a total of 30 chromosomes, with a size of 794.43 Mb, and 23,093 protein-coding genes. Comparative genomics analysis reveals that the genetic relationship between S. lanzhouensis and S. meridionalis Chen is the closest, and their common ancestor experienced two rounds of whole genome duplication (WGD) before diverging. Notably, amino acid metabolism-related pathways are enriched in the unique S. lanzhouensis gene family. In addition, we observed that the chemokine receptor and scavenger receptor gene families contracted in S. lanzhouensis, which may be associated with its diminished immune response. Our research findings provide valuable insights into the endangered mechanism of S. lanzhouensis and enhance our understanding of the evolution of Siluriformes fish. [ABSTRACT FROM AUTHOR]

The climbing mouse is a rare, small mammal listed as an endangered species on the China species red list. Molecular phylogenetic analyses and the evolutionary history of the genus remain unexplored because of the extreme difficulty in capturing individuals and their narrow distribution. Here, we collected 44 specimens, sequenced one mitochondrial and eight nuclear genes, and integrated morphological approaches to estimate phylogenetic relationships, delimit species boundaries, and explore evolutionary history. Molecular analyses and morphological results supported the validity of these four species. Here, we describe two new species, Vernaya meiguites sp. nov. and Vernaya nushanensis sp. nov., and recognize Vernaya foramena, previously considered a subspecies of Vernaya fulva, as a valid species. The estimated divergence time suggests that the climbing mouse began to diversify during the Pliocene (3.36 Ma). [ABSTRACT FROM AUTHOR]

Simple Summary: The koala has recently been listed as an endangered species in the northern part of its range where it faces significant challenges associated with habitat fragmentation, climate change, and disease. Fundamental to its conservation is a detailed knowledge of its reproductive system, particularly with respect to what represents normal anatomy and/or pathology. In order to conserve we must first understand. This article brings together findings from two PhD theses that provide a detailed description of the female koala reproductive anatomy and histology through different presumptive stages of the reproductive cycle. The koala (Phascolarctos cinereus), while being an iconic Australian marsupial, has recently been listed as endangered. To establish an improved understanding of normal reproductive anatomy, this paper brings together unpublished research which has approached the topic from two perspectives: (1) the establishment of an artificial insemination program, and (2) the definition of Chlamydia spp.-derived histopathological changes of the female koala urogenital system. Based on the presentation and histological processing of over 70 opportunistic specimens, recovered from wildlife hospitals in Southeast Queensland (Australia), we describe the gross and microanatomy of the koala ovary, oviduct, uteri, vaginal complex, and urogenital sinus during the interestrous, proliferative, and luteal phases of the reproductive cycle. [ABSTRACT FROM AUTHOR]

Observatories are designed to collect data for a range of uses. The Australian Acoustic Observatory (A2O) was established to collect environmental sound, including audible species calls, from 344 recorders at 86 sites around Australia. We examine the potential of the A2O to monitor near threatened, threatened, endangered and critically endangered species, based on their vocal behaviour, geographic distributions in relation to the sites of the A2O and on some knowledge of habitat use. Using IUCN and EPBC lists of threatened and endangered species, we extracted species that vocalized in the audible range, and using conservative estimates of their geographic ranges, determined whether there was a possibility of hearing them at these sites. We found that it may be possible to detect up to 171 threatened species at sites established for the A2O, and that individual sites have the potential to detect up to 40 threatened species. All 86 sites occurred in locations where threatened species could possibly be detected, and the list of detectable species included birds, amphibians, and mammals. We have incidentally detected one mammal and four bird species in the data during other work. Threatening processes to which potentially detectable species were exposed included all but two IUCN threat categories. We concluded that with applications of technology to search the audio data from the A2O, it could serve as an important tool for monitoring threatened species. [ABSTRACT FROM AUTHOR]

Sponge assemblages play a significant role in the functioning of the Mediterranean benthic ecosystem. The main goal of this study was to investigate the diversity and distribution of poorly known sponge communities in the mesophotic and deep-sea substrates of the eastern Mediterranean Sea. More than 1500 sponge specimens belonging to 87 taxa were collected from 156 stations during experimental and commercial bottom trawling in the Aegean Sea and the eastern part of the Ionian ecoregion, at depths of between 10 and 800 m. A total of 79 sponge species were found in the Aegean and 40 species in the Ionian Sea. Eight of these species are included in lists of endangered and threatened species, two were newly recorded in the Aegean and six were first recorded in the east Ionian Sea. Both community structure and diversity differed between the two ecoregions. Species richness, biomass, abundance and diversity decreased with increasing depth, while different species dominated, in terms of biomass, abundance and frequency of appearance, in the two ecoregions and the separate depth zones. In contrast with previous investigations, which mostly examined shallow-water sponges, no clear resemblance patterns were observed among the north and south Aegean subareas, probably due to the homogeneity of the deep-sea habitats under investigation. This study, using sampling material from fish stock monitoring programs for the first time, contributed to our knowledge of the largely unknown eastern Mediterranean mesophotic and deep-sea sponge populations, which are subjected to intensive trawling activities. [ABSTRACT FROM AUTHOR]

The Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) has been listed under the Endangered Species Act since 2012, with the Chesapeake Bay distinct population segment listed as endangered. We tracked the timing of occupancy and movement in Chesapeake Bay of adult Atlantic sturgeon from the York River to best identify when Atlantic sturgeon are likely to interact with anthropogenic threats. We monitored 84 adult (40 male and 44 female) Atlantic sturgeon from August 2013 through January 2020 by using acoustic telemetry. Both spawning and non-spawning fish regularly utilized Chesapeake Bay, with females and males arriving as early as 27 February (when the mean water temperature was 7.7°C) and 4 March (6.5°C) and departing as late as 24 January (6.3°C) and 27 January (6.5°C), respectively. Peak occupation of the bay by Atlantic sturgeon occurred from 1 April to 31 August and again from 15 October to 1 December. Females of above average size (>1880 mm in fork length) spent significantly longer in the bay (>113 d) than smaller females and all males before spawning; therefore, the females capable of producing the most eggs were disproportionately exposed to anthropogenic threats. Although changes in arrival and departure dates are not statistically significant, during the 7 years of this study, both males and females generally arrived earlier and departed later each year than the previous year, increasing residency in Chesapeake Bay by a month in that time. [ABSTRACT FROM AUTHOR]

• In IUCN Red list data, Lindernia minima is listed as an endangered plant species. • Developed a new preparation protocol for Vermi-Co extracts mixture. • Micropropagation of Lindernia minima were achieved with 97% survival rate. • This is the first report using Vermi-Co extracts mixture on shoot regeneration. The present investigation illustrates the synergistic growth effect of Vermi-Co (Vermicast and Coconut-water) extracts mixture with cytokinins on in vitro shoot regeneration of Lindernia minima. Due to less distribution threat status, this plant species has been considered as an endangered plant by IUCN (International Union for Conservation of Nature). Hence, it is necessary to conserve and to develop an efficient plant regeneration protocol for the rapid multiplication of L. minima. The nodal explants were inoculated on (¼) quarter-strength MS (Murashige and Skoog) medium supplemented with different concentrations (0.5 – 2.5 mg L-1) of BA (6-Benzyladenine), KIN (Kinetin) and TDZ (Thidiazuron) combined with various percentages of (5%, 15%, and 25%) Vermi-Co extracts mixture. Among the concentrations tested, 1.5 mg L-1 TDZ with 15% of Vermi-Co extracts mixture produced the maximum percentage of response with the highest (19.5 ± 0.20 shoots/explant) number of shoots and (10.2 ± 0.14 cm) shoot length. Then, the well-elongated shoots were transferred to rooting medium (quarter-strength MS) supplemented with 0.5 – 3.0 mg L-1 of IBA (Indole -3- butyric acid) and IAA (Indole -3- acetic acid). The highest percentage of response (98%) and maximum number of roots were observed in 1.5 mg L-1 IBA with 11.5 ± 0.29 roots per shoot and 6.6 ± 0.28 cm root length. Finally, well-developed plants were successfully transferred to the natural field condition with a survival rate of 97%. The present research revealed that, the combined growth stimulating effect of Vermi-Co extracts mixture combined with cytokinins increased the number of shoots and shoot length on shoot regeneration of L. minima from nodal explants. Our findings will be very useful for regeneration of Lindernia minima through plant tissue culture. [ABSTRACT FROM AUTHOR]

Woodfordia fruticosa (L.) Kurz is a woody medicinal shrub (Lythraceae) commonly known as the "fire flame bush." W. fruticosa plant parts either alone or whole plant have a long history of recommended use in the Indian medicine systems of Ayurveda, Unani, and Siddha (AUS). This plant is prominently known for its pharmacological properties, viz., antimicrobial, anti-inflammatory, anti-peptic ulcer, hepatoprotective, immunomodulatory, antitumor, cardioprotective, analgesic, and wound healing activities. Its important phyto-constituents, woodfordin C, woodfordin I, oenothein B, and isoschimacoalin-A, exhibit in vitro or in vivo physiological activities beneficial to human health. As the plant is a rich storehouse of phyto-constituents, it is indiscriminately used in its wild habitats. Moreover, due to very poor seed viability and difficult-to-root qualities, it is placed under IUCN list of endangered plant species. For W. fruticosa, biomass production or to its conservation by in vitro regeneration is the best feasible alternative. Till date, only few important in vitro regeneration methods are reported in W. fruticosa. ISSR molecular markers based clonal fidelity and Agrobacterium-mediated transformation has been demonstrated, indicating that W. fruticosa is amenable to genetic manipulation and genome editing studies. This review presents concise summary of updated reports on W. fruticosa phyto-constituents and their biological activities, while a critical appraisal of biotechnological interventions, shortcomings, and factors influencing such potential areas success was presented. The unexplored gaps addressed here are relevant for W. fruticosa scientific innovations yet to come. In this paper, for the first time, we have presented a simple and reproducible protocol for synthetic seed production in W. fruticosa. Key points: • Critical and updated records on W. fruticosa phytochemistry and its activities • In vitro propagation and elicitation of secondary metabolites in W. fruticosa • Key bottlenecks, in vitro flowering, value addition, and outlook in W. fruticosa [ABSTRACT FROM AUTHOR]

Objective: A central challenge in applied ecology is understanding how organisms are spatially and temporally distributed and how management might be tailored to maintain or restore species distributions. The niche concept is central to understanding species distributions, but the diversity of niche definitions requires that multiple dimensions be considered. For example, the Grinnellian niche concept focuses on environmental conditions that allow species to persist, the Eltonian niche concept stresses the influence of biotic interactions, and the fundamental niche concept considers both abiotic and biotic environmental features to define spaces that organisms could occupy. Methods: We combined abiotic (A), biotic (B), and movement (M) information (collectively, BAM model) to map the multidimensional niche of Prairie Chub Macrhybopsis australis, a regionally endemic freshwater fish currently under review for listing under the Endangered Species Act. We estimated A using remotely sensed environmental riverscape variables, B using the spatial distribution of a hybridization zone between Prairie Chub and Shoal Chub M. hyostoma, and M using data from a mark–recapture study. Result: The BAM model estimated the spatial extent of multiple niches, including the Grinnellian (A; extent = 944 km of river), Eltonian (B; 2974 km), and fundamental niche (overlap of A + B; 645 km) niches. When A, B, and M components were combined, the estimated extent of the Prairie Chub niche was 645 km. Conclusion: Our work shows that the realized, multidimensional niche of Prairie Chub includes medium to large rivers with high habitat connectivity in the upper–middle Red River basin upstream of the distribution of Shoal Chub. The current Prairie Chub distribution could be maintained by preventing further habitat fragmentation and maintaining the environmental gradient separating Prairie Chub from Shoal Chub. Expansion of the species distribution may be possible through restoration of longitudinal fluvial connectivity. Impact statementManagement of imperiled fishes might be improved by integration of biological (B) interactions, abiotic (A) gradients in habitat, and fish movement (M). We provide an example of the BAM framework using a fish that is a candidate for listing under the Endangered Species Act. [ABSTRACT FROM AUTHOR]

Objective: The distinct population segment (DPS) of Yelloweye Rockfish Sebastes ruberrimus inhabiting the Puget Sound/Georgia Basin was listed under the Endangered Species Act (ESA) in 2010, and a formal recovery plan for the DPS was published by National Oceanic and Atmospheric Administration Fisheries in 2017. In this recovery plan, the biological criteria for delisting or downlisting were specified as certain levels of spawning potential ratio (SPR), a commonly used metric of equilibrium stock status for commercially exploited fishes. Although this metric can be estimated from length compositions, the combination of length data with a catch history (which was not previously available for this DPS) improves our understanding of population dynamics over time and allows us to estimate a different measure of stock status, relative (to unfished) spawning stock biomass (SSB), rather than only SPR. Methods: To estimate relative SSB and reconstruct the historical dynamics of this DPS, we reconstructed the catch history from fisheries records, collated length data from historical and contemporary hook‐and‐line surveys, and fitted a data‐limited version of a statistical catch‐at‐age model. Result: Despite a high level of uncertainty, we estimated that Yelloweye Rockfish in Puget Sound are above 25% of unfished biomass (a reference point detailed in the recovery criteria) under the assumption of deterministic recruitment, presenting the first direct estimates of Yelloweye Rockfish population status in Puget Sound. Conclusion: However, as informed by recent genetic studies, the DPS boundaries of ESA‐listed Yelloweye Rockfish extend from South Puget Sound to Queen Charlotte Strait in British Columbia. The Canadian portion of this population is managed separately and is currently estimated to be at 32% of unfished biomass (95% quantiles = 15%–68%). Thus, the disjunction between the biological boundaries of the population and the jurisdictional boundaries between Canada and the United States presents an additional source of uncertainty in assessing recovery that must be addressed to achieve DPS‐wide recovery goals. Impact statementYelloweye Rockfish in Puget Sound are listed under the Endangered Species Act, but monitoring their recovery is difficult due to a lack of data. In this study, we applied elements of historical ecology and data‐limited fisheries stock assessment methods to estimate the status of this population for the first time, which will inform management actions to recover this species. [ABSTRACT FROM AUTHOR]

White band disease (WBD) has caused unprecedented declines in the Caribbean Acropora corals, which are now listed as critically endangered species. Highly disease-resistant Acropora cervicornis genotypes exist, but the genetic underpinnings of disease resistance are not understood. Using transmission experiments, a newly assembled genome, and whole-genome resequencing of 76 A. cervicornis genotypes from Florida and Panama, we identified 10 genomic regions and 73 single-nucleotide polymorphisms that are associated with disease resistance and that include functional protein-coding changes in four genes involved in coral immunity and pathogen detection. Polygenic scores calculated from 10 genomic loci indicate that genetic screens can detect disease resistance in wild and nursery stocks of A. cervicornis across the Caribbean. [ABSTRACT FROM AUTHOR]